Query psy12384
Match_columns 356
No_of_seqs 228 out of 1725
Neff 6.6
Searched_HMMs 13730
Date Fri Aug 16 17:47:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12384.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12384hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf5c3 f.23.23.1 (C:250-286) 9.1 53 0.0038 19.5 1.0 13 16-28 17-29 (37)
2 d1q90a3 f.23.23.1 (A:248-292) 8.3 29 0.0021 21.6 -0.5 13 214-226 16-28 (45)
3 d2axtl1 f.23.31.1 (L:1-37) Pho 6.3 2.6E+02 0.019 16.1 4.1 26 317-342 11-36 (37)
4 d1k8kf_ d.198.2.1 (F:) ARPC4 ( 3.0 1.8E+02 0.013 22.7 0.9 22 20-41 99-123 (167)
5 d1d4ba_ d.15.2.1 (A:) Cell dea 2.6 95 0.007 23.2 -1.2 11 216-226 96-106 (122)
6 d2v5pc1 g.1.1.1 (C:6-63) Insul 2.4 2.8E+02 0.02 17.8 1.1 13 15-27 7-19 (58)
7 d1wqji1 g.1.1.1 (I:2-63) Insul 2.4 2.8E+02 0.02 18.0 1.1 13 15-27 8-20 (62)
8 d2d8za2 g.39.1.3 (A:33-64) Fou 2.3 2.7E+02 0.019 15.7 0.7 16 160-175 10-26 (32)
9 d1xlya_ a.232.1.1 (A:) RNA-bin 2.3 4E+02 0.029 21.4 2.1 19 8-26 21-39 (232)
10 g1mso.1 g.1.1.1 (B:,A:) Insuli 2.1 3.7E+02 0.027 16.7 1.4 13 15-27 10-22 (51)
No 1
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=9.05 E-value=53 Score=19.50 Aligned_cols=13 Identities=31% Similarity=0.738 Sum_probs=9.9
Q ss_pred hHhHHhhhhhcCC
Q psy12384 16 LLDTVFFVLRKKN 28 (356)
Q Consensus 16 l~DTvf~vLrkk~ 28 (356)
++.-+++||+||+
T Consensus 17 ~laQi~lVlKKKQ 29 (37)
T d1vf5c3 17 MLAQLMLILKKKQ 29 (37)
T ss_dssp HHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHH
Confidence 3456789999985
No 2
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=8.25 E-value=29 Score=21.55 Aligned_cols=13 Identities=54% Similarity=0.835 Sum_probs=10.0
Q ss_pred hhhhhhhhhhcCC
Q psy12384 214 LLDTVFFVLRKKN 226 (356)
Q Consensus 214 l~DTvf~VLrkk~ 226 (356)
.+--+++||+||+
T Consensus 16 ~laQi~LVLKKKQ 28 (45)
T d1q90a3 16 LLTQVLLVLKKKQ 28 (45)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3566789999985
No 3
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.27 E-value=2.6e+02 Score=16.05 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=20.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHH
Q psy12384 317 KQNRILTYYMCFNVTAFLLLFLNFYR 342 (356)
Q Consensus 317 ~~~~~~~~~~~~~~~s~l~LF~~Fy~ 342 (356)
+.++...+.+.......-+||+++|-
T Consensus 11 eLNrtsLy~GlLlifvl~vLFssYfF 36 (37)
T d2axtl1 11 ELNRTSLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 44566777788788888899999874
No 4
>d1k8kf_ d.198.2.1 (F:) ARPC4 (20 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.04 E-value=1.8e+02 Score=22.67 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=16.4
Q ss_pred HhhhhhcCCCc---eeEeeecccch
Q psy12384 20 VFFVLRKKNNQ---ITALHVYHHSI 41 (356)
Q Consensus 20 vf~vLrkk~~~---~~fLH~yHH~~ 41 (356)
-|.|||+||-+ +|||=..+|.-
T Consensus 99 ~F~ILRrkPi~GYDISFLItn~h~e 123 (167)
T d1k8kf_ 99 NFFILRRKPVEGYDISFLITNFHTE 123 (167)
T ss_dssp TSTTBCSSCCTTCSEEEEEEHHHHH
T ss_pred hceeeeecCcCCCceeeeehhHHHH
Confidence 48999999854 67777766654
No 5
>d1d4ba_ d.15.2.1 (A:) Cell death-inducing effector B (CIDE-B), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.65 E-value=95 Score=23.25 Aligned_cols=11 Identities=36% Similarity=0.588 Sum_probs=6.9
Q ss_pred hhhhhhhhcCC
Q psy12384 216 DTVFFVLRKKN 226 (356)
Q Consensus 216 DTvf~VLrkk~ 226 (356)
||+|++|++.+
T Consensus 96 nT~lmvL~~gq 106 (122)
T d1d4ba_ 96 DTCLMVLQSGQ 106 (122)
T ss_dssp CCCCCEECSSC
T ss_pred CCEEEEECCCC
Confidence 56677776644
No 6
>d2v5pc1 g.1.1.1 (C:6-63) Insulin-like growth factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.45 E-value=2.8e+02 Score=17.78 Aligned_cols=13 Identities=46% Similarity=0.690 Sum_probs=9.9
Q ss_pred hhHhHHhhhhhcC
Q psy12384 15 ELLDTVFFVLRKK 27 (356)
Q Consensus 15 el~DTvf~vLrkk 27 (356)
||+||+-+|-.-|
T Consensus 7 ~LVdaL~~VCg~r 19 (58)
T d2v5pc1 7 ELVDTLQFVCGDR 19 (58)
T ss_dssp HHHHHHHHHSTTS
T ss_pred HHHHHHHHHHcCC
Confidence 7888888887655
No 7
>d1wqji1 g.1.1.1 (I:2-63) Insulin-like growth factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.43 E-value=2.8e+02 Score=17.99 Aligned_cols=13 Identities=38% Similarity=0.641 Sum_probs=9.9
Q ss_pred hhHhHHhhhhhcC
Q psy12384 15 ELLDTVFFVLRKK 27 (356)
Q Consensus 15 el~DTvf~vLrkk 27 (356)
||+||+-+|-.-|
T Consensus 8 ~LvdaL~~VCG~r 20 (62)
T d1wqji1 8 ELVDALQFVCGDR 20 (62)
T ss_dssp HHHHHHHHHHGGG
T ss_pred HHHHHHHHHHccC
Confidence 7888888887554
No 8
>d2d8za2 g.39.1.3 (A:33-64) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.26 E-value=2.7e+02 Score=15.74 Aligned_cols=16 Identities=13% Similarity=0.177 Sum_probs=10.8
Q ss_pred cCccc-cccCCCCcchh
Q psy12384 160 LGPQW-MENRKPIDLKY 175 (356)
Q Consensus 160 ~g~~~-Mk~r~p~~Lk~ 175 (356)
.|+|+ ||+-+|+-++-
T Consensus 10 ~GQry~~rd~~PyC~~C 26 (32)
T d2d8za2 10 SGQRFTARDDFAYCLNC 26 (32)
T ss_dssp TTSCCEESSSSEECHHH
T ss_pred cCceeeecCCCeehHHh
Confidence 36666 68888886543
No 9
>d1xlya_ a.232.1.1 (A:) RNA-binding protein She2p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.26 E-value=4e+02 Score=21.44 Aligned_cols=19 Identities=16% Similarity=0.434 Sum_probs=16.9
Q ss_pred hhhHhHhhhHhHHhhhhhc
Q psy12384 8 YFFAKVVELLDTVFFVLRK 26 (356)
Q Consensus 8 ~~lsK~~el~DTvf~vLrk 26 (356)
-|+|.+++++...+.++||
T Consensus 21 ~YiS~yv~~LNk~I~~lRr 39 (232)
T d1xlya_ 21 RYLSSYIHVLNKFISHLRR 39 (232)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999988
No 10
>g1mso.1 g.1.1.1 (B:,A:) Insulin {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.15 E-value=3.7e+02 Score=16.68 Aligned_cols=13 Identities=15% Similarity=0.595 Sum_probs=10.5
Q ss_pred hhHhHHhhhhhcC
Q psy12384 15 ELLDTVFFVLRKK 27 (356)
Q Consensus 15 el~DTvf~vLrkk 27 (356)
||+|++-+|-.-|
T Consensus 10 ~LVdaL~~vCg~r 22 (51)
T g1mso.1 10 HLVEALYLVCGER 22 (51)
T ss_dssp HHHHHHHHHHGGG
T ss_pred HHHHHHHHHHccC
Confidence 7888888888665
Done!