RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12384
(356 letters)
>gnl|CDD|216332 pfam01151, ELO, GNS1/SUR4 family. Members of this family are
involved in long chain fatty acid elongation systems
that produce the 26-carbon precursors for ceramide and
sphingolipid synthesis. Predicted to be integral
membrane proteins, in eukaryotes they are probably
located on the endoplasmic reticulum. Yeast ELO3 affects
plasma membrane H+-ATPase activity, and may act on a
glucose-signaling pathway that controls the expression
of several genes that are transcriptionally regulated by
glucose such as PMA1.
Length = 244
Score = 184 bits (470), Expect = 8e-57
Identities = 93/246 (37%), Positives = 129/246 (52%), Gaps = 32/246 (13%)
Query: 138 FLMSSIWPISSIVAFYLYFVLKLGPQWMENRKPIDLKYVLILYNAIQVVYSIGLCWAVVK 197
L+SS WP+ I+ YL FV LGP+ M NRKP DLK +LI++N V+ S+ + ++
Sbjct: 1 PLLSSPWPVILIIVLYLVFV-FLGPKIMRNRKPFDLKRLLIVHNLFLVLLSLYGFYGLLA 59
Query: 198 VVYSSGWYY-------------------------FFAKVVELLDTVFFVLRKKNNQITAL 232
Y F +K +ELLDTVF VLRKK Q++ L
Sbjct: 60 GAGWGRGLYLALCVCYSFDPGAIRMGLVGFWYWLFLSKFLELLDTVFLVLRKKQRQLSFL 119
Query: 233 HVYHHSIMAFSTWGYLKYVQGEQGLFIGFMNSAVHVMMYFYYLVAALGPQFQKYIWWKKY 292
HVYHH+ M +W LKY G FI +NS VHV+MYFYY +AALG + +WWKKY
Sbjct: 120 HVYHHATMLLYSWLGLKYGPGGHFWFIALLNSFVHVIMYFYYFLAALGAR-GLPVWWKKY 178
Query: 293 MTKIQLGQFIIMLIYLVGLLVF----GCKQNRIL-TYYMCFNVTAFLLLFLNFYRKAYIH 347
+T++Q+ QF++ L ++ L GC ++L LFLNFY K+Y
Sbjct: 179 ITQLQIIQFVLGLAHVGYALYNYTKGGCGGPFPKAVRLGLVYYVSYLFLFLNFYIKSYKK 238
Query: 348 NNQLKQ 353
+ K+
Sbjct: 239 PKKKKK 244
Score = 118 bits (297), Expect = 2e-31
Identities = 52/99 (52%), Positives = 70/99 (70%), Gaps = 3/99 (3%)
Query: 5 GWYY--FFAKVVELLDTVFFVLRKKNNQITALHVYHHSIMAFSTWGYLKYVQGEQGLFIG 62
G++Y F +K +ELLDTVF VLRKK Q++ LHVYHH+ M +W LKY G FI
Sbjct: 88 GFWYWLFLSKFLELLDTVFLVLRKKQRQLSFLHVYHHATMLLYSWLGLKYGPGGHFWFIA 147
Query: 63 FMNSAVHVMMYFYYLVAALGPQFQKYIWWKKYMTKIQLL 101
+NS VHV+MYFYY +AALG + +WWKKY+T++Q++
Sbjct: 148 LLNSFVHVIMYFYYFLAALGAR-GLPVWWKKYITQLQII 185
>gnl|CDD|140278 PTZ00251, PTZ00251, fatty acid elongase; Provisional.
Length = 272
Score = 38.7 bits (90), Expect = 0.002
Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 17/149 (11%)
Query: 209 AKVVELLDTVFFVLRKKNNQITALHVYHHSIMAFSTWGYLKYVQGEQGLFI-GFMNSAVH 267
+KV E DT F ++ K + L +HH + W + Y QG MN VH
Sbjct: 121 SKVPEFGDTFFLIMGGKK--LPFLSWFHHVTIFLYAW--MSYQQGSSIWICAAAMNYFVH 176
Query: 268 VMMYFYYLVAALGPQFQKYIW-WKKYMTKIQLGQFIIMLIYLVGLLVF--------GCKQ 318
+MYFY+ ++ G F+K + + Y+T +Q+ Q + L ++V GC
Sbjct: 177 SIMYFYFALSEAG--FKKLVKPFAMYITLLQITQMVGGLFVSGYVIVQKLTKGDPKGCSG 234
Query: 319 NRI-LTYYMCFNVTAFLLLFLNFYRKAYI 346
+ LF + K Y+
Sbjct: 235 TTMATARGQLMIYIFNFYLFSEMFVKGYV 263
Score = 35.6 bits (82), Expect = 0.029
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 11 AKVVELLDTVFFVLRKKNNQITALHVYHHSIMAFSTWGYLKYVQGEQGLFI-GFMNSAVH 69
+KV E DT F ++ K + L +HH + W + Y QG MN VH
Sbjct: 121 SKVPEFGDTFFLIMGGKK--LPFLSWFHHVTIFLYAW--MSYQQGSSIWICAAAMNYFVH 176
Query: 70 VMMYFYYLVAALGPQFQKYIWWKKYMTKIQLLDI 103
+MYFY+ ++ G F+K + K + I LL I
Sbjct: 177 SIMYFYFALSEAG--FKKLV--KPFAMYITLLQI 206
>gnl|CDD|111054 pfam02117, 7TM_GPCR_Sra, Serpentine type 7TM GPCR chemoreceptor
Sra. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Sra is part of the Sra
superfamily of chemoreceptors. Chemoperception is one of
the central senses of soil nematodes like C. elegans
which are otherwise 'blind' and 'deaf'.
Length = 328
Score = 29.2 bits (66), Expect = 3.5
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 12/63 (19%)
Query: 300 QFIIMLIYLVGLLVFGCKQNRIL--TYYMC--------FNVTAFLLLFLNFYRKAYIHNN 349
QFI M IY G+L + I YY+ F +F LL YR +N
Sbjct: 245 QFIFMFIYSFGVLTLRSIRENISPEQYYLWVVWLYTVPFIALSFPLLL--IYRIRSTRSN 302
Query: 350 QLK 352
+ +
Sbjct: 303 RTR 305
>gnl|CDD|233291 TIGR01143, murF,
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
ligase. This family consists of the strictly bacterial
MurF gene of peptidoglycan biosynthesis. This enzyme is
almost always
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a
few species, MurE adds lysine rather than
diaminopimelate. This enzyme acts on the product from
MurE activity, and so is also subfamily rather than
equivalog. Staphylococcus aureus is an example of
species in this MurF protein would differ [Cell
envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 417
Score = 28.0 bits (63), Expect = 9.4
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 182 AIQVVYSIGLCWAVVKVVYSSGWYYFFAKVVELLDTVFFVLRKK 225
I +V+ +G AV+ + FA ELL + +LRK
Sbjct: 355 GIDLVFLVGEEAAVIYDAFGKQ-GKHFADKDELLAFLKTLLRKG 397
>gnl|CDD|131350 TIGR02297, HpaA, 4-hydroxyphenylacetate catabolism regulatory
protein HpaA. This putative transcriptional regulator,
which contains both the substrate-binding, dimerization
domain (pfam02311) and the helix-turn-helix DNA-binding
domain (pfam00165) of the AraC famil, is located
proximal to genes of the 4-hydroxyphenylacetate
catabolism pathway.
Length = 287
Score = 27.5 bits (61), Expect = 9.9
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 107 PIIPHLGFTTRFFWNPDHNRYVGLVPLINSWFLMSSIWPISSIVAFYLYFVLKLGPQWME 166
P +PH F + D + +V V W L+ S+ AFY ++L PQ
Sbjct: 76 PSVPH-----GFVTDLDADGHVLTVRQELVWQLLESLKGDIG-DAFYP-MCIELSPQEEA 128
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.332 0.144 0.478
Gapped
Lambda K H
0.267 0.0746 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,702,689
Number of extensions: 1858091
Number of successful extensions: 2319
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2294
Number of HSP's successfully gapped: 85
Length of query: 356
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 258
Effective length of database: 6,590,910
Effective search space: 1700454780
Effective search space used: 1700454780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 60 (26.9 bits)