RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12384
         (356 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 34.8 bits (79), Expect = 0.052
 Identities = 52/365 (14%), Positives = 102/365 (27%), Gaps = 104/365 (28%)

Query: 9   FFAKVVELLDTVFFVLRKKNNQITALHVYHHSIMA------FSTWGYLKYVQGEQ----- 57
              K    LD     L ++        +   SI+A       +TW   K+V  ++     
Sbjct: 306 LLLKY---LDCRPQDLPREVLTTNPRRL---SIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 58  GLFIGFMNSAVHVMMYFYYLVAALGPQFQKYIWWKKYMTKI--QLLDIMYLPIIPHLGFT 115
              +  +  A +  M+    V      F            I   LL +++  +I      
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSV------FPPS-------AHIPTILLSLIWFDVIK---SD 403

Query: 116 TRFFWNPDHNRYVGLVPLINSWFLMSSIWPISSIVAFYLYFVLKLGPQWMENRKPIDLKY 175
                N  H        L+      S+I    SI + YL   +KL  ++  +R  +D   
Sbjct: 404 VMVVVNKLHKY-----SLVEKQPKESTI----SIPSIYLELKVKLENEYALHRSIVD--- 451

Query: 176 VLILYNAIQVVYSIGLCWAVVKVVYSSGWYYFFAKVVELLDTVFFVLRKKNNQITALHVY 235
               YN  +   S      ++       +Y                             +
Sbjct: 452 ---HYNIPKTFDS----DDLIPPYLDQYFYSHIG-------------------------H 479

Query: 236 H-------HSIMAFSTWGYLKYVQGEQGLFIGFMNSAVHVMMYFYYLVAALGPQFQKYIW 288
           H         +  F    +L +          F+   +      +    ++    Q+  +
Sbjct: 480 HLKNIEHPERMTLFRMV-FLDF---------RFLEQKIRHDSTAWNASGSILNTLQQLKF 529

Query: 289 WKKYMTKIQLGQFIIMLIYLVGLLVFGCKQNRILTYYMCFNVTAFLLLFLNFYRKAYIHN 348
           +K Y+      ++  ++  ++  L    ++N I + Y        LL          I  
Sbjct: 530 YKPYICDND-PKYERLVNAILDFL-PKIEENLICSKYTD------LLRIALMAEDEAIFE 581

Query: 349 NQLKQ 353
              KQ
Sbjct: 582 EAHKQ 586


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.9 bits (64), Expect = 3.2
 Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 28/107 (26%)

Query: 122 PDHNRYVGLVPLINSWFLMSSIWPISSIVAFYLYFV----LKLGPQWMENRKPIDLKYVL 177
           PD + Y+  +P+        S  P+  ++    Y V    L   P  + +     LK   
Sbjct: 226 PDKD-YLLSIPI--------S-CPLIGVIQLAHYVVTAKLLGFTPGELRSY----LKGAT 271

Query: 178 ILYNAIQVVYSIGLCWAVVKVVYSSGWYYFFAKVVELLDTVFFV-LR 223
                +          AV  +  +  W  FF  V + +  +FF+ +R
Sbjct: 272 GHSQGLVT--------AVA-IAETDSWESFFVSVRKAITVLFFIGVR 309


>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint
           center for structural genomics, JCSG; HET: MSE; 1.25A
           {Pectobacterium atrosepticum SCRI1043}
          Length = 336

 Score = 28.5 bits (64), Expect = 3.5
 Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 1/63 (1%)

Query: 195 VVKVVYSSGWYYFFAKVVELLDTVFFVLRKKNNQITALHVYHHSIMAFSTWGYLKY-VQG 253
             +VV S    Y      E  D    +L   N           +    S WG  +  + G
Sbjct: 196 NARVVTSQTANYHHPHHPEFEDFGDAMLLGDNGATGYFRCDWFTPDGLSVWGDGRLTILG 255

Query: 254 EQG 256
            +G
Sbjct: 256 TEG 258


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.332    0.144    0.478 

Gapped
Lambda     K      H
   0.267   0.0547    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,728,939
Number of extensions: 337042
Number of successful extensions: 557
Number of sequences better than 10.0: 1
Number of HSP's gapped: 552
Number of HSP's successfully gapped: 9
Length of query: 356
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 261
Effective length of database: 4,049,298
Effective search space: 1056866778
Effective search space used: 1056866778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 58 (26.5 bits)