RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12384
         (356 letters)



>d1nkta1 a.162.1.1 (A:226-349) Pre-protein crosslinking domain of
          SecA {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 124

 Score = 26.9 bits (59), Expect = 2.0
 Identities = 11/74 (14%), Positives = 27/74 (36%), Gaps = 3/74 (4%)

Query: 3  SSGWYYFFAKVVELLDT-VFFVLRKKNNQITALHVYHHSIMAFSTWGYLKYVQGEQGLFI 61
          +S WY  FA++  L++  V + +  +   +         +      G     +      +
Sbjct: 6  ASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQ--LGIDNLYEAANSPLV 63

Query: 62 GFMNSAVHVMMYFY 75
           ++N+A+     F 
Sbjct: 64 SYLNNALKAKELFS 77



 Score = 26.9 bits (59), Expect = 2.0
 Identities = 11/74 (14%), Positives = 27/74 (36%), Gaps = 3/74 (4%)

Query: 201 SSGWYYFFAKVVELLDT-VFFVLRKKNNQITALHVYHHSIMAFSTWGYLKYVQGEQGLFI 259
           +S WY  FA++  L++  V + +  +   +         +      G     +      +
Sbjct: 6   ASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQ--LGIDNLYEAANSPLV 63

Query: 260 GFMNSAVHVMMYFY 273
            ++N+A+     F 
Sbjct: 64  SYLNNALKAKELFS 77


>d1c8ua2 d.38.1.3 (A:116-286) Thioesterase II (TesB) {Escherichia
           coli [TaxId: 562]}
          Length = 171

 Score = 25.2 bits (54), Expect = 9.9
 Identities = 10/55 (18%), Positives = 17/55 (30%)

Query: 94  YMTKIQLLDIMYLPIIPHLGFTTRFFWNPDHNRYVGLVPLINSWFLMSSIWPISS 148
           Y + +  L +   P               DH+ +      +N W L S     +S
Sbjct: 86  YASDLNFLPVALQPHGIGFLEPGIQIATIDHSMWFHRPFNLNEWLLYSVESTSAS 140


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.332    0.144    0.478 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,450,478
Number of extensions: 68692
Number of successful extensions: 168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 17
Length of query: 356
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 270
Effective length of database: 1,226,816
Effective search space: 331240320
Effective search space used: 331240320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 53 (24.7 bits)