Query psy12385
Match_columns 188
No_of_seqs 152 out of 946
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 17:48:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12385.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12385hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3071|consensus 100.0 1.4E-55 3.1E-60 380.5 8.6 173 14-188 8-210 (274)
2 PF01151 ELO: GNS1/SUR4 family 100.0 9.2E-54 2E-58 364.8 13.1 154 31-188 2-188 (250)
3 PTZ00251 fatty acid elongase; 100.0 1.2E-53 2.7E-58 369.3 8.9 159 23-188 14-208 (272)
4 KOG3072|consensus 100.0 3.5E-43 7.5E-48 302.7 0.8 158 24-188 29-214 (282)
5 KOG3187|consensus 67.6 80 0.0017 27.1 12.6 117 64-181 8-141 (223)
6 COG5548 Small integral membran 30.6 25 0.00054 26.5 0.9 14 51-64 69-82 (105)
7 PF06210 DUF1003: Protein of u 24.8 1.6E+02 0.0035 22.3 4.5 51 32-85 1-51 (108)
8 PLN02838 3-hydroxyacyl-CoA deh 22.2 4.9E+02 0.011 22.1 11.3 112 66-181 10-141 (221)
9 PF15110 TMEM141: TMEM141 prot 18.6 3.1E+02 0.0067 20.5 4.7 44 51-95 43-90 (94)
10 COG4420 Predicted membrane pro 14.7 2.7E+02 0.006 23.4 4.1 52 31-85 54-105 (191)
No 1
>KOG3071|consensus
Probab=100.00 E-value=1.4e-55 Score=380.49 Aligned_cols=173 Identities=50% Similarity=0.885 Sum_probs=160.5
Q ss_pred HHHHHHhhc--CcccccccCCCCchhHHHHHHhhhheeeecchhhhcCCCCccchhHHHHHHHHHHHHHHHHHHHH----
Q psy12385 14 DSIRDEVVE--HKVVDNWFLMPSWFPVTTIVVVYLIFVKYVGPKMMENRKPYNIKYIILAYNLIQTLYNANIVAYF---- 87 (188)
Q Consensus 14 ~~~~~~~~~--d~r~~~w~l~~s~~~~~~i~~~YL~~V~~~gp~~M~~Rkp~~Lk~~~~~yN~~l~~~S~~~~~~~---- 87 (188)
.+..+...+ |+|++ ||+++||+++..++.+|+ +|+..||++|+||||++||+++.+||++|++.|++++.+.
T Consensus 8 ~~~~~~~~~~~~~~v~-~~~l~s~~~~~~il~~yl-~v~~~G~~~m~nrkp~~l~~~~~vyN~~~vl~s~~i~~~~~~~~ 85 (274)
T KOG3071|consen 8 HPLIDNFRWSPDDRVR-SPLLSSPWPLLSILLAYL-FVLKLGPKLMRNRKPLKLRGLSQVYNLGQVLLSAAIFLEGELWR 85 (274)
T ss_pred chHHHHhcCCCCcccc-chhccCcHHHHHHHHHHH-HHHHhcHhhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444 66665 999999999999999999 7778999999999999999999999999999999977665
Q ss_pred ---------H---------------HHHHHHHHHHHHHhhHHHHHHHhcCCCcceeeeeehhhhHHHHhHhhhcccccch
Q psy12385 88 ---------C---------------EASYLYYISKIIDLLDTIFFVLRKKNSHITFLHVYHHAMMVLTTWAFLRYFKGEQ 143 (188)
Q Consensus 88 ---------C---------------~~~~~fylsK~~El~DTvf~VLrkk~~qlsfLHvyHH~~~~~~~w~~~~~~~~~~ 143 (188)
| +++|+||+||+.|++||+|+|||||++|+||||+|||++|...+|.++++.++|+
T Consensus 86 ~~~~~y~l~c~~~~~~~~~~~~r~~~~~~~yylsKflel~DTvFfVLRKk~rqlsFLHvyHH~~m~~~~~~~l~~~~~g~ 165 (274)
T KOG3071|consen 86 WLKTAYNLRCQPCFPSDHEPKLRERFWSYLYYLSKFLELLDTVFFVLRKKDRQLSFLHVYHHGVMAFLSYLWLKFYGGGH 165 (274)
T ss_pred hhccccceEEEecCCCCCCcceeehHHHHHHHHHHHHHHHhheeeEEEccCCceEEEEEEecchHHHhhhheeEEeCCce
Confidence 3 8899999999999999999999999999999999999999999999999999899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCccchhhHHHhhcccccCC
Q psy12385 144 GIFIGLLNSLVHVVMYSYYFLAALGPEVQKYLWWKKYITKFQLVS 188 (188)
Q Consensus 144 ~~~~~~~Ns~VH~iMY~YY~l~a~g~~~~~~~~~k~~iT~lQivq 188 (188)
.++.+.+|++||++||+||+++|+|+++++.+|||+++|.+|++|
T Consensus 166 ~~~~~~lNs~VHviMY~YYflsa~G~~v~~~lWWkky~t~vQlvq 210 (274)
T KOG3071|consen 166 GFFAILLNSFVHVIMYGYYFLSAFGPRVQWYLWWKKYITIVQLVQ 210 (274)
T ss_pred eeeeeehhhhHHHHHHHHHHHHhhCcCccccchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987
No 2
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=100.00 E-value=9.2e-54 Score=364.82 Aligned_cols=154 Identities=51% Similarity=0.916 Sum_probs=146.0
Q ss_pred CCCCchhHHHHHHhhhheeeecchhhhcCCCCccchhHHHHHHHHHHHHHHHHHHHH-----------------H-----
Q psy12385 31 LMPSWFPVTTIVVVYLIFVKYVGPKMMENRKPYNIKYIILAYNLIQTLYNANIVAYF-----------------C----- 88 (188)
Q Consensus 31 l~~s~~~~~~i~~~YL~~V~~~gp~~M~~Rkp~~Lk~~~~~yN~~l~~~S~~~~~~~-----------------C----- 88 (188)
|++||++++.++++|+++| +.||++||||||++||+++.+||++|+++|++++++. |
T Consensus 2 l~~~~~~~~~~~~~Yl~~V-~~g~~~m~~Rkp~~Lk~~~~~~N~~l~~~S~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~ 80 (250)
T PF01151_consen 2 LMSNPWFPILIVVLYLLFV-FLGPRFMKNRKPFNLKTLIIVYNLFLVVFSAYMFYGILPALFSSLFKGGLYSSFCQPVDF 80 (250)
T ss_pred cccCCHHHHHHHHHHHHHH-HHHHHHHhhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCC
Confidence 7899999999999999999 8999999999999999999999999999999999887 5
Q ss_pred -----------HHHHHHHHHHHHHhhHHHHHHHhcCCCcceeeeeehhhhHHHHhHhhhcccccchhHHHHHHHHHHHHH
Q psy12385 89 -----------EASYLYYISKIIDLLDTIFFVLRKKNSHITFLHVYHHAMMVLTTWAFLRYFKGEQGIFIGLLNSLVHVV 157 (188)
Q Consensus 89 -----------~~~~~fylsK~~El~DTvf~VLrkk~~qlsfLHvyHH~~~~~~~w~~~~~~~~~~~~~~~~~Ns~VH~i 157 (188)
.+.|+||+||++|++||+|+||||| |+||||||||+++++.+|.++++.++|+.++++.+|++||++
T Consensus 81 ~~~~~~~~~~~~~~~~fylSK~~EllDTvflvLrkK--~lsfLHvYHH~~~~~~~w~~~~~~~~~~~~~~~~~N~~VH~i 158 (250)
T PF01151_consen 81 DPDSYSSGRVGFWYWLFYLSKYYELLDTVFLVLRKK--QLSFLHVYHHASTLLYCWISYKYGPGGQIWFIAALNSFVHVI 158 (250)
T ss_pred CCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHhhhhhhhhhhhheeeeccccchhHHHHHHHHHHHH
Confidence 7788999999999999999999999 899999999999999999999998889999999999999999
Q ss_pred HHHHHHHHHhCCCccchhhHHHhhcccccCC
Q psy12385 158 MYSYYFLAALGPEVQKYLWWKKYITKFQLVS 188 (188)
Q Consensus 158 MY~YY~l~a~g~~~~~~~~~k~~iT~lQivq 188 (188)
||+||+++|+|.| +.+.||||+||.+||+|
T Consensus 159 MY~YY~l~a~g~~-~~~~~~k~~IT~~Qi~Q 188 (250)
T PF01151_consen 159 MYSYYFLSALGIR-KVPRWWKKYITSLQIVQ 188 (250)
T ss_pred HHHHHHHHhcccc-cchhHHHHHHhHHhhhh
Confidence 9999999999964 23469999999999999
No 3
>PTZ00251 fatty acid elongase; Provisional
Probab=100.00 E-value=1.2e-53 Score=369.26 Aligned_cols=159 Identities=28% Similarity=0.460 Sum_probs=143.5
Q ss_pred CcccccccCCCCchhHHHHHHhhhheeeecchhhhc----CCCCcc-chhHHHHHHHHHHHHHHHHHHHH----------
Q psy12385 23 HKVVDNWFLMPSWFPVTTIVVVYLIFVKYVGPKMME----NRKPYN-IKYIILAYNLIQTLYNANIVAYF---------- 87 (188)
Q Consensus 23 d~r~~~w~l~~s~~~~~~i~~~YL~~V~~~gp~~M~----~Rkp~~-Lk~~~~~yN~~l~~~S~~~~~~~---------- 87 (188)
.+|+++| +++||++++.++++|+++|+ .||++|| +|||++ ||+++++||++|+++|++++++.
T Consensus 14 ~~~~~~w-l~~~~~~~~~i~~~Yl~~V~-~Gp~~M~~~~~~Rkp~~~Lr~~l~~yNl~l~v~s~~~~~~~~~~~~~~~~~ 91 (272)
T PTZ00251 14 GHAVQKW-LASNVDICVYIAAAYLTFVF-KGPQLVDAIFHGNPPVPLIKKCWALWNIGLSVFSMYGVYRVVPPLLNNLRK 91 (272)
T ss_pred cHHHHHH-HHhCCHHHHHHHHHHHHHHH-HHHHHHhhccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5888999 99999999999999999995 9999997 499999 99999999999999999998765
Q ss_pred -------H-------------HHHHHHHHHHHHHhhHHHHHHHhcCCCcceeeeeehhhhHHHHhHhhhcccccchhHH-
Q psy12385 88 -------C-------------EASYLYYISKIIDLLDTIFFVLRKKNSHITFLHVYHHAMMVLTTWAFLRYFKGEQGIF- 146 (188)
Q Consensus 88 -------C-------------~~~~~fylsK~~El~DTvf~VLrkk~~qlsfLHvyHH~~~~~~~w~~~~~~~~~~~~~- 146 (188)
| .++|+|++||++|++||+|+||||| |+||||||||+++++.+|.++. ++++..+
T Consensus 92 ~g~~~~~C~~~~~~~~~~~~~~~~~~f~lsK~~El~DTvF~VLRKK--qvsFLHvYHH~~~~~~~w~~~~--~g~~~~~~ 167 (272)
T PTZ00251 92 YGLHDTLCTFREDEFYTGKVGVAMGLFSISKVPEFGDTFFLIMGGK--KLPFLSWFHHVTIFLYAWMSYQ--QGSSIWIC 167 (272)
T ss_pred cCcceeeecCCCCcchhHHHHHHHHHHHHHHHHHHHhHhhhhhcCC--CchHHHHHHHHHHHHHHHHHHh--CCCcHHHH
Confidence 4 7789999999999999999999999 9999999999999999999863 4444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccchhhHHHhhcccccCC
Q psy12385 147 IGLLNSLVHVVMYSYYFLAALGPEVQKYLWWKKYITKFQLVS 188 (188)
Q Consensus 147 ~~~~Ns~VH~iMY~YY~l~a~g~~~~~~~~~k~~iT~lQivq 188 (188)
++.+|++||++||+||+++|+|++. ...+|||+||.+||+|
T Consensus 168 ~~~lNs~VH~iMY~YY~lsa~g~~~-~~~~~kk~IT~lQi~Q 208 (272)
T PTZ00251 168 AAAMNYFVHSIMYFYFALSEAGFKK-LVKPFAMYITLLQITQ 208 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCch-hhhHHHHHHHHHHHHH
Confidence 6999999999999999999999862 2235999999999998
No 4
>KOG3072|consensus
Probab=100.00 E-value=3.5e-43 Score=302.67 Aligned_cols=158 Identities=32% Similarity=0.531 Sum_probs=142.8
Q ss_pred cccccccCCCCchhHHHHHHhhhheeeecchhhhcCCCCccchhHHHHHHHHHHHHHHHHHHHH----------------
Q psy12385 24 KVVDNWFLMPSWFPVTTIVVVYLIFVKYVGPKMMENRKPYNIKYIILAYNLIQTLYNANIVAYF---------------- 87 (188)
Q Consensus 24 ~r~~~w~l~~s~~~~~~i~~~YL~~V~~~gp~~M~~Rkp~~Lk~~~~~yN~~l~~~S~~~~~~~---------------- 87 (188)
.+++.| +.+++...+.++++|++++ +.|+++|+|||||+|++++.+||.+++++|+.+++.+
T Consensus 29 ~~~~~~-~~~~~~~si~is~~Y~v~i-f~~q~fM~~RkpF~L~~pL~lWn~~La~FSi~g~lr~~~~~~~~~~~~Gf~~s 106 (282)
T KOG3072|consen 29 ESVVKF-FQEHWPLSIHISIAYLVLI-FGGQNFMKNRKPFQLTKPLNLWNFCLAAFSILGALRTIPEFLAVFRAAGFKGS 106 (282)
T ss_pred HHHHHH-HHhccchhHHHHHHHHHHH-HHHHHHHhcCCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhee
Confidence 444555 4566777899999999999 8999999999999999999999999999999998887
Q ss_pred -H-----------HHHHHHHHHHHHHhhHHHHHHHhcCCCcceeeeeehhhhHHHHhHhhhcccccchhHHHHHHHHHHH
Q psy12385 88 -C-----------EASYLYYISKIIDLLDTIFFVLRKKNSHITFLHVYHHAMMVLTTWAFLRYFKGEQGIFIGLLNSLVH 155 (188)
Q Consensus 88 -C-----------~~~~~fylsK~~El~DTvf~VLrkk~~qlsfLHvyHH~~~~~~~w~~~~~~~~~~~~~~~~~Ns~VH 155 (188)
| +|+|+|.+||..|+.||+|+||||| |++|||||||+++++..|.++....+. +.+++.+|.+||
T Consensus 107 ~C~~~~~~~~~~~fW~~~fvlSK~~ElgDT~FiVLRKr--PliFlHWYHHi~~~iy~~~~y~~~~a~-~rw~i~mNy~vH 183 (282)
T KOG3072|consen 107 YCDANNLGLSVSGFWSWLFVLSKAPELGDTIFIVLRKR--PLIFLHWYHHILVLIYAWHSYIEKVAW-GRWFIWMNYLVH 183 (282)
T ss_pred eeecccCCcchHHHHHHHHHHHhhhhhhceeEEEeccC--ccEEEechhhheeeeeeeeecccCCcC-ceEEEEEehhHH
Confidence 5 8999999999999999999999998 699999999999999999998755544 446999999999
Q ss_pred HHHHHHHHHHHhCCCccchhhHHHhhcccccCC
Q psy12385 156 VVMYSYYFLAALGPEVQKYLWWKKYITKFQLVS 188 (188)
Q Consensus 156 ~iMY~YY~l~a~g~~~~~~~~~k~~iT~lQivq 188 (188)
++||+||+++|+|.|+|+ +..+.||.+||+|
T Consensus 184 a~MY~YY~lrsl~ir~Pk--~vam~iTtlQi~Q 214 (282)
T KOG3072|consen 184 AFMYSYYALRSLGIRLPK--SVAMAITTLQIVQ 214 (282)
T ss_pred HHHHHHHHHHHcCCCCCh--HHHHHHHHHHHHH
Confidence 999999999999999875 5799999999998
No 5
>KOG3187|consensus
Probab=67.57 E-value=80 Score=27.12 Aligned_cols=117 Identities=19% Similarity=0.299 Sum_probs=71.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHH--H------------HHHHHHHHHHHHHhhHHHHHHH--hcCCCcceeeeeehhhh
Q psy12385 64 NIKYIILAYNLIQTLYNANIVAYF--C------------EASYLYYISKIIDLLDTIFFVL--RKKNSHITFLHVYHHAM 127 (188)
Q Consensus 64 ~Lk~~~~~yN~~l~~~S~~~~~~~--C------------~~~~~fylsK~~El~DTvf~VL--rkk~~qlsfLHvyHH~~ 127 (188)
--+.-+.+||+.+.+.-.+..+.. | ...+...+.--.-++|...... -|.+.=+++-|+-|-..
T Consensus 8 ~~~~yL~~YNl~~fvgw~~~~l~~~~~~~~~~~~~~~y~si~~~l~~~Qtla~lEi~~~~~g~v~S~~v~t~~Qv~sRl~ 87 (223)
T KOG3187|consen 8 LKKSYLFLYNLVSFVGWIVLLLATVVLYLTKGSPAVLYDSIEKVLKFCQTLALLEIINASFGLVKSSPVVTLFQVSSRLF 87 (223)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCccccHHHHHHHHHHHHHHHHHHHHHHHhccccCCceeeeeeecccce
Confidence 346788999999999866655555 3 2233344444445555554444 33333347788888776
Q ss_pred HHHHhHhhhcccc-cchhHHHHHHHHHHHHHHHHHHHHHHhCCCccchhhHHHhh
Q psy12385 128 MVLTTWAFLRYFK-GEQGIFIGLLNSLVHVVMYSYYFLAALGPEVQKYLWWKKYI 181 (188)
Q Consensus 128 ~~~~~w~~~~~~~-~~~~~~~~~~Ns~VH~iMY~YY~l~a~g~~~~~~~~~k~~i 181 (188)
++...-......+ .....+....=+..-.+=|+||+.+..|- .++.+.|-||=
T Consensus 88 il~~i~~~~~~~~~~~~~~~l~~~ws~tEIiRY~fY~f~~~~~-~p~~l~wlRYt 141 (223)
T KOG3187|consen 88 ILWGIFHMCSIIQASAVVFFLLIAWSLTEIIRYSFYAFNLLGV-LPKLLTWLRYT 141 (223)
T ss_pred ehhhhhhccchhhccchHHHHHHHHHHHHHHHHHHHHHHhccC-CchhhhHhhhh
Confidence 5444333333222 12233344566888899999999999987 45555676663
No 6
>COG5548 Small integral membrane protein [Function unknown]
Probab=30.58 E-value=25 Score=26.47 Aligned_cols=14 Identities=21% Similarity=0.603 Sum_probs=12.4
Q ss_pred ecchhhhcCCCCcc
Q psy12385 51 YVGPKMMENRKPYN 64 (188)
Q Consensus 51 ~~gp~~M~~Rkp~~ 64 (188)
+.++|.||.|||..
T Consensus 69 ~~~~R~~~sRKpvP 82 (105)
T COG5548 69 FFALRLVRSRKPVP 82 (105)
T ss_pred hcchhccccCCCcc
Confidence 67899999999975
No 7
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.76 E-value=1.6e+02 Score=22.26 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=31.3
Q ss_pred CCCchhHHHHHHhhhheeeecchhhhcCCCCccchhHHHHHHHHHHHHHHHHHH
Q psy12385 32 MPSWFPVTTIVVVYLIFVKYVGPKMMENRKPYNIKYIILAYNLIQTLYNANIVA 85 (188)
Q Consensus 32 ~~s~~~~~~i~~~YL~~V~~~gp~~M~~Rkp~~Lk~~~~~yN~~l~~~S~~~~~ 85 (188)
++|+.+.+..++...+-+ ..+-....+++||--+ .++-|+++++.+++.+-
T Consensus 1 ~GS~~Fi~~~~~~~~~Wi--~~N~~~~~~~~fDpyP-FilLnl~lS~~Aa~~ap 51 (108)
T PF06210_consen 1 GGSWTFIIIFTVFLAVWI--LLNILAPPRPAFDPYP-FILLNLVLSLEAAYQAP 51 (108)
T ss_pred CCcHHHHHHHHHHHHHHH--HHHhhccccCCCCCcc-HHHHHHHHHHHHHHHHH
Confidence 467777776666665544 2334444445565444 56678998888887543
No 8
>PLN02838 3-hydroxyacyl-CoA dehydratase subunit of elongase
Probab=22.20 E-value=4.9e+02 Score=22.12 Aligned_cols=112 Identities=18% Similarity=0.313 Sum_probs=56.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH-H-------HHH-----HHHHHHHHHhhHHHHHHHhcCCCc--ceeeeeehhhhHHH
Q psy12385 66 KYIILAYNLIQTLYNANIVAYFC-E-------ASY-----LYYISKIIDLLDTIFFVLRKKNSH--ITFLHVYHHAMMVL 130 (188)
Q Consensus 66 k~~~~~yN~~l~~~S~~~~~~~C-~-------~~~-----~fylsK~~El~DTvf~VLrkk~~q--lsfLHvyHH~~~~~ 130 (188)
|.-+.+||.+|++.=.++++.+. . ..| .-.+..-.-.+|.+.-.+.--+++ .++++|.-=..
T Consensus 10 ~~YL~~YN~~~~~gW~~il~~~~~~~~~~~~~~~~~~v~~~l~~~QtlAilEilHa~~GlVrS~v~~T~~QV~sR~~--- 86 (221)
T PLN02838 10 RLYLTVYNWVVFIGWAQVLYLAVTTLKESGHEAVYAAVERPLQLAQTAAVLEILHGLVGLVRSPVSATLPQIGSRLF--- 86 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcchHHHHHHHHHH---
Confidence 56789999999887666665542 0 001 111112222233333332222222 25566654444
Q ss_pred HhHhhhcccccch----hHHHHHHHHHHHHHHHHHHHHH-HhCCCccchhhHHHhh
Q psy12385 131 TTWAFLRYFKGEQ----GIFIGLLNSLVHVVMYSYYFLA-ALGPEVQKYLWWKKYI 181 (188)
Q Consensus 131 ~~w~~~~~~~~~~----~~~~~~~Ns~VH~iMY~YY~l~-a~g~~~~~~~~~k~~i 181 (188)
.+|......+..+ .......=+..-+|=|+||++. ..|.. |+.+.|-||=
T Consensus 87 iv~~v~~~~p~~~~~~~~~~l~~aWs~tEvIRY~yY~~~~~~~~~-p~~L~WLRYt 141 (221)
T PLN02838 87 LTWGILWSFPEVRSHILVTSLVISWSITEIIRYSFFGMKEAFGFA-PSWLLWLRYS 141 (221)
T ss_pred HHHHHhhcCcchhcccHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cHHHHHHHHh
Confidence 3444333222111 1223344477889999999877 44653 4455576653
No 9
>PF15110 TMEM141: TMEM141 protein family; PDB: 2LOR_A.
Probab=18.60 E-value=3.1e+02 Score=20.50 Aligned_cols=44 Identities=18% Similarity=0.463 Sum_probs=25.4
Q ss_pred ecchhhhcCCCCccchhHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q psy12385 51 YVGPKMMENRKPYNIKYIILAYNLIQTLYNANIVAYF----CEASYLYY 95 (188)
Q Consensus 51 ~~gp~~M~~Rkp~~Lk~~~~~yN~~l~~~S~~~~~~~----C~~~~~fy 95 (188)
+.++++-++|=||.++.-+.+=-+.=++.| |.+... |.-.|++.
T Consensus 43 f~~Q~~iqrrlpYp~q~~~LVS~v~~sv~s-Y~vT~~et~~Cq~~W~~l 90 (94)
T PF15110_consen 43 FFLQKAIQRRLPYPFQWNILVSVVVASVAS-YQVTRVETQKCQNLWMFL 90 (94)
T ss_dssp HHHHHHHHTTSSSSS-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCchhHHHHHHhhhhh-hhhhhHHHHHHHHHHHHH
Confidence 467888889999999865554333322222 222222 87777764
No 10
>COG4420 Predicted membrane protein [Function unknown]
Probab=14.74 E-value=2.7e+02 Score=23.36 Aligned_cols=52 Identities=15% Similarity=0.210 Sum_probs=34.8
Q ss_pred CCCCchhHHHHHHhhhheeeecchhhhcCCCCccchhHHHHHHHHHHHHHHHHHH
Q psy12385 31 LMPSWFPVTTIVVVYLIFVKYVGPKMMENRKPYNIKYIILAYNLIQTLYNANIVA 85 (188)
Q Consensus 31 l~~s~~~~~~i~~~YL~~V~~~gp~~M~~Rkp~~Lk~~~~~yN~~l~~~S~~~~~ 85 (188)
+.+||.+++..+++.++.+ .+.-.-.-..|++-=++ ++=|++++..+++..-
T Consensus 54 f~Gsw~fil~~~~~ll~Wi--~lNl~~~~~~~wDpyPF-i~LnLllS~~AaiqAp 105 (191)
T COG4420 54 FGGSWAFILTFTLLLLLWI--VLNLFLVPGLAWDPYPF-ILLNLLLSTLAAIQAP 105 (191)
T ss_pred HcCChHHHHHHHHHHHHHH--HHHHhhhcCCcCCCccH-HHHHHHHHHHHHHHHh
Confidence 3688998888888777665 23444444477765444 4558988888887543
Done!