Query psy12385
Match_columns 188
No_of_seqs 152 out of 946
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 17:48:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12385.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12385hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lor_A Transmembrane protein 1 16.7 44 0.0015 24.4 0.0 39 51-94 46-92 (108)
2 1q90_A Apocytochrome F; membra 9.2 47 0.0016 28.2 -1.0 11 103-113 264-274 (292)
3 2wb6_A AFV1-102; archaeal viru 7.5 1.8E+02 0.0061 21.0 1.6 15 99-113 40-54 (130)
4 2knu_A E1_peptide, genome poly 6.7 1.4E+02 0.0047 16.7 0.5 20 28-47 6-25 (29)
5 4dkl_A MU-type opioid receptor 6.1 3.7E+02 0.013 21.9 3.2 16 147-162 427-442 (464)
6 2ks9_A Substance-P receptor; w 6.0 3.9E+02 0.013 21.0 3.2 16 147-162 293-308 (364)
7 3eml_A Human adenosine A2A rec 5.8 4E+02 0.014 21.9 3.2 18 145-162 436-453 (488)
8 1m5a_B Insulin B chain; alpha 5.4 3.3E+02 0.011 15.3 1.6 14 100-113 9-22 (30)
9 3vw7_A Proteinase-activated re 5.3 3.1E+02 0.01 22.7 2.2 17 146-162 435-451 (484)
10 4eiy_A Adenosine receptor A2A/ 5.1 4.6E+02 0.016 21.2 3.2 17 146-162 396-412 (447)
No 1
>2lor_A Transmembrane protein 141; helical bundle; NMR {Homo sapiens}
Probab=16.67 E-value=44 Score=24.43 Aligned_cols=39 Identities=15% Similarity=0.483 Sum_probs=25.3
Q ss_pred ecchhhhcCCCCccchhHHHHHHHHHHHHHHHHH-HHH-------HHHHHHH
Q psy12385 51 YVGPKMMENRKPYNIKYIILAYNLIQTLYNANIV-AYF-------CEASYLY 94 (188)
Q Consensus 51 ~~gp~~M~~Rkp~~Lk~~~~~yN~~l~~~S~~~~-~~~-------C~~~~~f 94 (188)
+.++++-++|=||.++ ||++.+++.+-++ |.. |...|+|
T Consensus 46 f~~Q~~vqrklpYp~q-----wniLVs~v~~svaSY~VTr~eT~kC~~~Wm~ 92 (108)
T 2lor_A 46 FGLQMFIQRKFPYPLQ-----WSLLVAVVAGSVVSYGVTRVESEKCNNLWLF 92 (108)
Confidence 4567888888899888 5666655544322 222 7777775
No 2
>1q90_A Apocytochrome F; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 f.23.23.1
Probab=9.15 E-value=47 Score=28.17 Aligned_cols=11 Identities=45% Similarity=0.836 Sum_probs=8.9
Q ss_pred hHHHHHHHhcC
Q psy12385 103 LDTIFFVLRKK 113 (188)
Q Consensus 103 ~DTvf~VLrkk 113 (188)
+--+|+||+||
T Consensus 264 laQi~LVLKKK 274 (292)
T 1q90_A 264 LTQVLLVLKKK 274 (292)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHhheeehh
Confidence 45678999998
No 3
>2wb6_A AFV1-102; archaeal virus, viral protein; 1.95A {Acidianus filamentous virus 1}
Probab=7.51 E-value=1.8e+02 Score=20.98 Aligned_cols=15 Identities=33% Similarity=0.773 Sum_probs=12.3
Q ss_pred HHHhhHHHHHHHhcC
Q psy12385 99 IIDLLDTIFFVLRKK 113 (188)
Q Consensus 99 ~~El~DTvf~VLrkk 113 (188)
..|++|..|+|..|-
T Consensus 40 msefldsmflviekl 54 (130)
T 2wb6_A 40 MSEFLDSMFLVIEKL 54 (130)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh
Confidence 358999999999763
No 4
>2knu_A E1_peptide, genome polyprotein; HCV, pretransmembrane, glycoprotein, envelope protein, transmembrane, membrane protein; NMR {Hepatitis c virus}
Probab=6.65 E-value=1.4e+02 Score=16.74 Aligned_cols=20 Identities=35% Similarity=0.833 Sum_probs=15.6
Q ss_pred cccCCCCchhHHHHHHhhhh
Q psy12385 28 NWFLMPSWFPVTTIVVVYLI 47 (188)
Q Consensus 28 ~w~l~~s~~~~~~i~~~YL~ 47 (188)
.|.+|.|+.+....+++|+.
T Consensus 6 awdmMmnwspt~~~~~a~~l 25 (29)
T 2knu_A 6 AWDMMMNWSPTAALVVAQLL 25 (29)
T ss_dssp GGGTTCCSCCTTHHHHHHHC
T ss_pred HHHHHhccCchHHHHHHHHH
Confidence 58888888877777888774
No 5
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=6.07 E-value=3.7e+02 Score=21.87 Aligned_cols=16 Identities=31% Similarity=0.708 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy12385 147 IGLLNSLVHVVMYSYY 162 (188)
Q Consensus 147 ~~~~Ns~VH~iMY~YY 162 (188)
.+.+|+.++|+.|++.
T Consensus 427 L~~~ns~~NPiIY~~~ 442 (464)
T 4dkl_A 427 LGYTNSCLNPVLYAFL 442 (464)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhhhchhHHHHHHh
Confidence 6688999999999874
No 6
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=5.99 E-value=3.9e+02 Score=21.04 Aligned_cols=16 Identities=6% Similarity=0.428 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy12385 147 IGLLNSLVHVVMYSYY 162 (188)
Q Consensus 147 ~~~~Ns~VH~iMY~YY 162 (188)
.+.+|+.+||+.|.+.
T Consensus 293 l~~~ns~~NPiiY~~~ 308 (364)
T 2ks9_A 293 LAMSSTMYNPIIYCCL 308 (364)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5678999999999874
No 7
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=5.75 E-value=4e+02 Score=21.88 Aligned_cols=18 Identities=33% Similarity=0.597 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy12385 145 IFIGLLNSLVHVVMYSYY 162 (188)
Q Consensus 145 ~~~~~~Ns~VH~iMY~YY 162 (188)
.+.+.+|+.++|+.|++.
T Consensus 436 ~~l~~~ns~~NPiIY~~~ 453 (488)
T 3eml_A 436 IVLSHTNSVVNPFIYAYR 453 (488)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhchhhhhhc
Confidence 347789999999999875
No 8
>1m5a_B Insulin B chain; alpha helices, beta sheets, 3(10) helices, disulphide bridge hormone-growth factor complex; 1.20A {Sus scrofa} SCOP: g.1.1.1 PDB: 1aph_B 1b18_B 1b19_B 1b2a_B 1b2b_B 1b2c_B 1b2d_B 1b2e_B 1b2f_B 1b2g_B 1bph_B 1cph_B 1dph_B 1b17_B 1mpj_B 1wav_B 1zni_B 2a3g_B 2bn1_B 2bn3_B ...
Probab=5.40 E-value=3.3e+02 Score=15.34 Aligned_cols=14 Identities=14% Similarity=0.534 Sum_probs=11.2
Q ss_pred HHhhHHHHHHHhcC
Q psy12385 100 IDLLDTIFFVLRKK 113 (188)
Q Consensus 100 ~El~DTvf~VLrkk 113 (188)
-|++|+..+|-.-|
T Consensus 9 s~LVdaL~~vCgdR 22 (30)
T 1m5a_B 9 SHLVEALYLVCGER 22 (30)
T ss_dssp HHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhccC
Confidence 37899999988765
No 9
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=5.27 E-value=3.1e+02 Score=22.68 Aligned_cols=17 Identities=12% Similarity=0.401 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy12385 146 FIGLLNSLVHVVMYSYY 162 (188)
Q Consensus 146 ~~~~~Ns~VH~iMY~YY 162 (188)
+.+.+|+.++|+.|++.
T Consensus 435 ~L~~~ns~iNPiIY~~~ 451 (484)
T 3vw7_A 435 CVSSISCCIDPLIYYYA 451 (484)
T ss_dssp HHHTTHHHHHHHHHHHT
T ss_pred HHHHhccccchHHHHHh
Confidence 35568999999999863
No 10
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=5.13 E-value=4.6e+02 Score=21.20 Aligned_cols=17 Identities=29% Similarity=0.553 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy12385 146 FIGLLNSLVHVVMYSYY 162 (188)
Q Consensus 146 ~~~~~Ns~VH~iMY~YY 162 (188)
+.+.+|+.++|+.|++.
T Consensus 396 ~l~~~ns~~NPiIY~~~ 412 (447)
T 4eiy_A 396 VLSHTNSVVNPFIYAYR 412 (447)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchhhhHhc
Confidence 46778999999999864
Done!