Query psy12385
Match_columns 188
No_of_seqs 152 out of 946
Neff 5.9
Searched_HMMs 13730
Date Fri Aug 16 17:49:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12385.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12385hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf5c3 f.23.23.1 (C:250-286) 22.5 19 0.0014 20.1 1.5 11 103-113 18-28 (37)
2 d1q90a3 f.23.23.1 (A:248-292) 16.2 18 0.0013 21.0 0.4 12 102-113 16-27 (45)
3 d1dlya_ a.1.1.1 (A:) Protozoan 9.7 1.8E+02 0.013 18.2 4.3 44 12-56 15-58 (121)
4 d1tuba2 d.79.2.1 (A:246-440) T 8.2 54 0.004 23.6 1.0 24 94-124 141-164 (195)
5 d1dlwa_ a.1.1.1 (A:) Protozoan 7.8 2.6E+02 0.019 17.4 4.6 47 11-58 14-60 (116)
6 d1idra_ a.1.1.1 (A:) Protozoan 7.1 2.9E+02 0.021 17.6 4.5 48 11-59 26-73 (127)
7 d1s69a_ a.1.1.1 (A:) Protozoan 6.9 3E+02 0.022 17.3 4.6 46 12-58 16-61 (123)
8 d2btoa2 d.79.2.1 (A:253-432) T 5.8 71 0.0052 22.5 0.5 24 94-124 129-152 (180)
9 d1khva_ e.8.1.4 (A:) Viral RNA 4.0 2.8E+02 0.02 22.5 3.2 22 140-162 303-324 (497)
10 d2d8za2 g.39.1.3 (A:33-64) Fou 4.0 91 0.0066 16.6 -0.1 16 52-67 10-26 (32)
No 1
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=22.46 E-value=19 Score=20.06 Aligned_cols=11 Identities=36% Similarity=0.797 Sum_probs=9.1
Q ss_pred hHHHHHHHhcC
Q psy12385 103 LDTIFFVLRKK 113 (188)
Q Consensus 103 ~DTvf~VLrkk 113 (188)
+--+++||+||
T Consensus 18 laQi~lVlKKK 28 (37)
T d1vf5c3 18 LAQLMLILKKK 28 (37)
T ss_dssp HHHHHHHHHTG
T ss_pred HHHHHHHHHHH
Confidence 56678999998
No 2
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=16.16 E-value=18 Score=21.00 Aligned_cols=12 Identities=50% Similarity=0.877 Sum_probs=9.7
Q ss_pred hhHHHHHHHhcC
Q psy12385 102 LLDTIFFVLRKK 113 (188)
Q Consensus 102 l~DTvf~VLrkk 113 (188)
.+--+|+||+||
T Consensus 16 ~laQi~LVLKKK 27 (45)
T d1q90a3 16 LLTQVLLVLKKK 27 (45)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 356789999999
No 3
>d1dlya_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Green alga (Chlamydomonas eugametos) [TaxId: 3054]}
Probab=9.72 E-value=1.8e+02 Score=18.19 Aligned_cols=44 Identities=14% Similarity=0.255 Sum_probs=29.7
Q ss_pred HHHHHHHHhhcCcccccccCCCCchhHHHHHHhhhheeeecchhh
Q psy12385 12 RIDSIRDEVVEHKVVDNWFLMPSWFPVTTIVVVYLIFVKYVGPKM 56 (188)
Q Consensus 12 ~~~~~~~~~~~d~r~~~w~l~~s~~~~~~i~~~YL~~V~~~gp~~ 56 (188)
-+..+|+.+.+||+.+.++-..+....-.-...++..+ ..||..
T Consensus 15 lv~~FY~~i~~d~~l~~~F~~~d~~~~~~~~~~f~~~~-~GGp~~ 58 (121)
T d1dlya_ 15 AVDKFYNKIVADPTVSTYFSNTDMKVQRSKQFAFLAYA-LGGASE 58 (121)
T ss_dssp HHHHHHHHHHTCTTTGGGGTTSCHHHHHHHHHHHHHHH-TTSSSC
T ss_pred HHHHHHHHHHcCHHHHHhCCCCCHHHHHHHHHHHHHHH-hCCCcc
Confidence 35667777777999998865445555555666777766 677764
No 4
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]}
Probab=8.25 E-value=54 Score=23.59 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=16.9
Q ss_pred HHHHHHHHhhHHHHHHHhcCCCcceeeeeeh
Q psy12385 94 YYISKIIDLLDTIFFVLRKKNSHITFLHVYH 124 (188)
Q Consensus 94 fylsK~~El~DTvf~VLrkk~~qlsfLHvyH 124 (188)
-.+.|+.+=.|..+ +|| .|||+|=
T Consensus 141 ~~f~~i~~~Fdkl~---~rk----Aflh~Y~ 164 (195)
T d1tuba2 141 EAWARLDHKFDLMY---AKR----AFVHWYV 164 (195)
T ss_dssp HHHHHHHHHHHHHT---TTT----CCTTTGG
T ss_pred HHHHHHHHHHHHHH---hhc----hHHHHhc
Confidence 44567777777775 555 7999994
No 5
>d1dlwa_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Ciliate (Paramecium caudatum) [TaxId: 5885]}
Probab=7.82 E-value=2.6e+02 Score=17.40 Aligned_cols=47 Identities=13% Similarity=0.105 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhcCcccccccCCCCchhHHHHHHhhhheeeecchhhhc
Q psy12385 11 TRIDSIRDEVVEHKVVDNWFLMPSWFPVTTIVVVYLIFVKYVGPKMME 58 (188)
Q Consensus 11 ~~~~~~~~~~~~d~r~~~w~l~~s~~~~~~i~~~YL~~V~~~gp~~M~ 58 (188)
.-+..+|+.+.+||+.+..+--.+......-...|+..+ ..||..-+
T Consensus 14 ~lv~~fY~~i~~d~~l~~~F~~~d~~~~~~~~~~fl~~~-~GGp~~Y~ 60 (116)
T d1dlwa_ 14 AVTAQFYANIQADATVATFFNGIDMPNQTNKTAAFLCAA-LGGPNAWT 60 (116)
T ss_dssp HHHHHHHHHHHTCTTTGGGGTTCCHHHHHHHHHHHHHHH-TTCSSCCC
T ss_pred HHHHHHHHHHHcCHHHHHhcCCCCHHHHHHHHHHHHHHH-cCCCCCCC
Confidence 345667777777999988754334444555677788777 67876443
No 6
>d1idra_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbN [TaxId: 1773]}
Probab=7.07 E-value=2.9e+02 Score=17.64 Aligned_cols=48 Identities=10% Similarity=0.151 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhcCcccccccCCCCchhHHHHHHhhhheeeecchhhhcC
Q psy12385 11 TRIDSIRDEVVEHKVVDNWFLMPSWFPVTTIVVVYLIFVKYVGPKMMEN 59 (188)
Q Consensus 11 ~~~~~~~~~~~~d~r~~~w~l~~s~~~~~~i~~~YL~~V~~~gp~~M~~ 59 (188)
.-+.++|+.+.+||+.+..+--.+....-.-...|+..+ ..||..-..
T Consensus 26 ~lv~~FY~~i~~d~~l~~~F~~~d~~~~~~~~~~fl~~~-~GGp~~Y~g 73 (127)
T d1idra_ 26 VVVEDFYVRVLADDQLSAFFSGTNMSRLKGKQVEFFAAA-LGGPEPYTG 73 (127)
T ss_dssp HHHHHHHHHHHHCTTTGGGGTTCCHHHHHHHHHHHHHHH-TTCSCCCCS
T ss_pred HHHHHHHHHHHcChHHHHhcCCCCHHHHHHHHHHHHHHH-hCcCCCCCC
Confidence 335666777666999988753333444455667888777 688875443
No 7
>d1s69a_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Cyanobacteria (Synechocystis sp.), pcc 6803 [TaxId: 1143]}
Probab=6.89 E-value=3e+02 Score=17.30 Aligned_cols=46 Identities=11% Similarity=0.283 Sum_probs=30.5
Q ss_pred HHHHHHHHhhcCcccccccCCCCchhHHHHHHhhhheeeecchhhhc
Q psy12385 12 RIDSIRDEVVEHKVVDNWFLMPSWFPVTTIVVVYLIFVKYVGPKMME 58 (188)
Q Consensus 12 ~~~~~~~~~~~d~r~~~w~l~~s~~~~~~i~~~YL~~V~~~gp~~M~ 58 (188)
-+.++|+.+.+||+....+--.++...-.-...|+.-+ ..||..-+
T Consensus 16 lv~~FY~~i~~d~~l~~~F~~~d~~~~~~~~~~Fl~~~-~GGp~~Y~ 61 (123)
T d1s69a_ 16 AVDKFYERVLQDDRIKHFFADVDMAKQRAHQKAFLTYA-FGGTDKYD 61 (123)
T ss_dssp HHHHHHHHHHTCTTTGGGGTTCCHHHHHHHHHHHHHHH-TTSSSCCS
T ss_pred HHHHHHHHHHcCHHHHHhcCcCCHHHHHHHHHHHHHHH-cCcCCCCC
Confidence 35567777777999887754334455555667777777 68887543
No 8
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]}
Probab=5.83 E-value=71 Score=22.52 Aligned_cols=24 Identities=21% Similarity=0.486 Sum_probs=15.5
Q ss_pred HHHHHHHHhhHHHHHHHhcCCCcceeeeeeh
Q psy12385 94 YYISKIIDLLDTIFFVLRKKNSHITFLHVYH 124 (188)
Q Consensus 94 fylsK~~El~DTvf~VLrkk~~qlsfLHvyH 124 (188)
=.+.++.|=.|..+ +|| .|||||=
T Consensus 129 ~~f~~~~~~F~~m~---~rk----Aflh~Y~ 152 (180)
T d2btoa2 129 RVLDRICHNFDKLW---QRK----AFANWYL 152 (180)
T ss_dssp HHHHHHHHHHHHHH---TTT----TTHHHHH
T ss_pred HHHHHHHHHHHHHH---hcC----hhHHHhc
Confidence 34566666666654 555 7999873
No 9
>d1khva_ e.8.1.4 (A:) Viral RNA polymerase {Rabbit hemorrhagic disease virus [TaxId: 11976]}
Probab=3.99 E-value=2.8e+02 Score=22.51 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=16.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHH
Q psy12385 140 KGEQGIFIGLLNSLVHVVMYSYY 162 (188)
Q Consensus 140 ~~~~~~~~~~~Ns~VH~iMY~YY 162 (188)
++|+. ..+.+||++|.++..|=
T Consensus 303 PSG~p-~Tsi~NSi~N~i~i~~a 324 (497)
T d1khva_ 303 PSGMP-FTSVINSICHWLLWSAA 324 (497)
T ss_dssp CTTST-THHHHHHHHHHHHHHHH
T ss_pred CCCCc-eeehhhhHHHHHHHHHH
Confidence 45655 48999999999876553
No 10
>d2d8za2 g.39.1.3 (A:33-64) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.98 E-value=91 Score=16.55 Aligned_cols=16 Identities=13% Similarity=0.364 Sum_probs=11.4
Q ss_pred cchhh-hcCCCCccchh
Q psy12385 52 VGPKM-MENRKPYNIKY 67 (188)
Q Consensus 52 ~gp~~-M~~Rkp~~Lk~ 67 (188)
.|+|+ ||+-+||=++-
T Consensus 10 ~GQry~~rd~~PyC~~C 26 (32)
T d2d8za2 10 SGQRFTARDDFAYCLNC 26 (32)
T ss_dssp TTSCCEESSSSEECHHH
T ss_pred cCceeeecCCCeehHHh
Confidence 57774 89989986543
Done!