RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy12385
         (188 letters)



>gnl|CDD|216332 pfam01151, ELO, GNS1/SUR4 family.  Members of this family are
           involved in long chain fatty acid elongation systems
           that produce the 26-carbon precursors for ceramide and
           sphingolipid synthesis. Predicted to be integral
           membrane proteins, in eukaryotes they are probably
           located on the endoplasmic reticulum. Yeast ELO3 affects
           plasma membrane H+-ATPase activity, and may act on a
           glucose-signaling pathway that controls the expression
           of several genes that are transcriptionally regulated by
           glucose such as PMA1.
          Length = 244

 Score =  169 bits (430), Expect = 4e-53
 Identities = 76/187 (40%), Positives = 106/187 (56%), Gaps = 31/187 (16%)

Query: 30  FLMPSWFPVTTIVVVYLIFVKYVGPKMMENRKPYNIKYIILAYNLIQTLYNANIVAYFCE 89
            L+ S +PV  I+V+YL+FV   GPK+M NRKP+++K +++ +NL   L +         
Sbjct: 1   PLLSSPWPVILIIVLYLVFVFL-GPKIMRNRKPFDLKRLLIVHNLFLVLLSLYGFYGLLA 59

Query: 90  AS-----------------------------YLYYISKIIDLLDTIFFVLRKKNSHITFL 120
            +                             Y  ++SK ++LLDT+F VLRKK   ++FL
Sbjct: 60  GAGWGRGLYLALCVCYSFDPGAIRMGLVGFWYWLFLSKFLELLDTVFLVLRKKQRQLSFL 119

Query: 121 HVYHHAMMVLTTWAFLRYFKGEQGIFIGLLNSLVHVVMYSYYFLAALGPEVQKYLWWKKY 180
           HVYHHA M+L +W  L+Y  G    FI LLNS VHV+MY YYFLAALG      +WWKKY
Sbjct: 120 HVYHHATMLLYSWLGLKYGPGGHFWFIALLNSFVHVIMYFYYFLAALGAR-GLPVWWKKY 178

Query: 181 ITKFQLV 187
           IT+ Q++
Sbjct: 179 ITQLQII 185


>gnl|CDD|140278 PTZ00251, PTZ00251, fatty acid elongase; Provisional.
          Length = 272

 Score = 44.8 bits (106), Expect = 7e-06
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 7/78 (8%)

Query: 93  LYYISKIIDLLDTIFFVLRKKNSHITFLHVYHHAMMVLTTWAFLRYFKGEQGIFIGL--L 150
           L+ ISK+ +  DT F ++  K   + FL  +HH  + L  W  + Y +G   I+I    +
Sbjct: 117 LFSISKVPEFGDTFFLIMGGKK--LPFLSWFHHVTIFLYAW--MSYQQGSS-IWICAAAM 171

Query: 151 NSLVHVVMYSYYFLAALG 168
           N  VH +MY Y+ L+  G
Sbjct: 172 NYFVHSIMYFYFALSEAG 189


>gnl|CDD|235641 PRK05904, PRK05904, coproporphyrinogen III oxidase; Provisional.
          Length = 353

 Score = 32.5 bits (74), Expect = 0.11
 Identities = 15/48 (31%), Positives = 23/48 (47%)

Query: 72  YNLIQTLYNANIVAYFCEASYLYYISKIIDLLDTIFFVLRKKNSHITF 119
              I  L+   I    C+  Y   I K+ DL +   F+L+ K +HI+F
Sbjct: 142 KEAINLLHKNGIYNISCDFLYCLPILKLKDLDEVFNFILKHKINHISF 189


>gnl|CDD|129668 TIGR00578, ku70, ATP-dependent DNA helicase II, 70 kDa subunit
           (ku70).  Proteins in this family are involved in
           non-homologous end joining, a process used for the
           repair of double stranded DNA breaks. This family is
           based on the phylogenomic analysis of JA Eisen (1999,
           Ph.D. Thesis, Stanford University). Cutoff does not
           detect the putative ku70 homologs in yeast [DNA
           metabolism, DNA replication, recombination, and repair].
          Length = 584

 Score = 29.9 bits (67), Expect = 0.89
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 4/33 (12%)

Query: 95  YISKII----DLLDTIFFVLRKKNSHITFLHVY 123
           Y SKII    DLL  +F+   K  + + F ++Y
Sbjct: 47  YTSKIISSDKDLLAVVFYGTEKDKNSVNFKNIY 79


>gnl|CDD|226244 COG3721, HugX, Putative heme iron utilization protein [Inorganic
           ion transport and metabolism].
          Length = 176

 Score = 27.5 bits (61), Expect = 3.2
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 9/64 (14%)

Query: 4   ILPQWIMTRIDSIRDEVVEHKVVDNWFLMPSWFPVTTIVVVYLIFVKYVG--PKMMENRK 61
            LP+  +  +   R + +       W  M  W  VTTIV    + ++  G  P       
Sbjct: 47  ALPEEAVVVVPGDRFDTI-------WDEMCEWGNVTTIVHTADVILEVKGPLPSGTHRHG 99

Query: 62  PYNI 65
            +N+
Sbjct: 100 YFNL 103


>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
          Length = 746

 Score = 27.8 bits (62), Expect = 3.9
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 4/33 (12%)

Query: 47  IFVKYVGPKMMENRKPYNIKYIILAYNLIQTLY 79
           I+V YV  KM+E  K  N+      YN+I  +Y
Sbjct: 677 IYVDYVKGKMLEVYKKTNLN----RYNIINDIY 705


>gnl|CDD|200554 cd10928, CE4_u4, Putative catalytic domain of uncharacterized
           bacterial proteins from the carbohydrate esterase 4
           superfamily.  This family corresponds to a group of
           uncharacterized bacterial proteins with high sequence
           similarity to the catalytic domain of the six-stranded
           barrel rhizobial NodB-like proteins, which remove
           N-linked or O-linked acetyl groups from cell wall
           polysaccharides and belong to the larger carbohydrate
           esterase 4 (CE4) superfamily.
          Length = 222

 Score = 27.3 bits (61), Expect = 4.1
 Identities = 5/16 (31%), Positives = 6/16 (37%)

Query: 124 HHAMMVLTTWAFLRYF 139
           HH +     W FL   
Sbjct: 191 HHLVHDEAAWEFLDAL 206


>gnl|CDD|151157 pfam10643, Cytochrome-c551, Photosystem P840 reaction-centre
          cytochrome c-551.  A photosynthetic reaction-centre
          complex is found in certain green sulphur bacteria such
          as Chlorobium vibrioforme which are anaerobic
          photo-auto-trophic organisms. The primary electron
          donor is P840, a probable B-Chl a dimer, and the
          primary electron acceptor is a B-Chl monomer. Also on
          the donor side c-type cytochromes are known to function
          as electron donors to photo-oxidized P840. This family
          is thus the secondary endogenous donor of the
          photosynthetic reaction-centre complex and is a
          membrane-bound cytochrome containing a single haem
          group.
          Length = 213

 Score = 27.1 bits (60), Expect = 4.5
 Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 3/26 (11%)

Query: 24 KVVDNWFLMPSWFPVTTIVVVYLIFV 49
          ++ D WFL    FP++  V+V ++F 
Sbjct: 73 RISDKWFLS---FPLSIFVIVAVMFA 95


>gnl|CDD|236563 PRK09554, feoB, ferrous iron transport protein B; Reviewed.
          Length = 772

 Score = 27.0 bits (60), Expect = 7.8
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 7/39 (17%)

Query: 121 HVYHHAMMVLTTWAFLRYFKGEQG-------IFIGLLNS 152
           HV H   +++ TW  L+ F    G       IFIG LNS
Sbjct: 493 HVPHLKSLLIQTWQRLKGFVLRAGKVIIIVSIFIGALNS 531


>gnl|CDD|184329 PRK13793, PRK13793, nicotinamide-nucleotide adenylyltransferase;
           Provisional.
          Length = 196

 Score = 26.1 bits (57), Expect = 9.4
 Identities = 10/41 (24%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 4   ILPQWIMTRIDSIRDEVVEHKVVDNWF---LMPSWFPVTTI 41
           + P+W+M  +DS++D +    + + ++   +    FP  TI
Sbjct: 120 LFPEWVMVELDSLKDSISATPMREAYYQGKIKTDAFPKGTI 160


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.331    0.143    0.460 

Gapped
Lambda     K      H
   0.267   0.0729    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,006,007
Number of extensions: 957608
Number of successful extensions: 1212
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1205
Number of HSP's successfully gapped: 53
Length of query: 188
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 97
Effective length of database: 6,901,388
Effective search space: 669434636
Effective search space used: 669434636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (25.3 bits)