RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12385
         (188 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 35.8 bits (82), Expect = 0.006
 Identities = 25/114 (21%), Positives = 38/114 (33%), Gaps = 31/114 (27%)

Query: 82  NIVAYFCEASYLY--YISKIIDLLDTIFFVLRK-KNSHITFLHVYHHAMMVLTTW----- 133
           N   YF E   LY  Y   + DL+      L +   + +    V+   + +L  W     
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL-EWLENPS 223

Query: 134 -----AFLRY----FKGEQGIFIGLLNSLVHVVMYSYYFLAALG--P-EVQKYL 175
                 +L              IG++  L H   Y       LG  P E++ YL
Sbjct: 224 NTPDKDYLLSIPISCP-----LIGVI-QLAH---Y-VVTAKLLGFTPGELRSYL 267



 Score = 29.2 bits (65), Expect = 1.0
 Identities = 26/176 (14%), Positives = 58/176 (32%), Gaps = 56/176 (31%)

Query: 36  FPVTTIVVV----YLIFVKYVGPKMMENRKPYNIKYIILAYNLIQTLYNANIV-AYFCEA 90
            P+  I V+    Y++  K +G        P  ++  +       T ++  +V A     
Sbjct: 238 CPL--IGVIQLAHYVVTAKLLG------FTPGELRSYLKG----ATGHSQGLVTAVAIAE 285

Query: 91  -----SYLYYISKIIDLLDTIFFV-LRKKNSHITFLHVYHHA----------------MM 128
                S+   + K I +L   FF+ +R    +  + +                     M+
Sbjct: 286 TDSWESFFVSVRKAITVL---FFIGVR---CYEAYPNTSLPPSILEDSLENNEGVPSPML 339

Query: 129 VLT--TWAFL--------RYFKGEQGIFIGLLNSLVHVVMYSYYF-LAALGPEVQK 173
            ++  T   +         +    + + I L+N   ++V+      L  L   ++K
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK 395


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 31.0 bits (69), Expect = 0.24
 Identities = 35/203 (17%), Positives = 70/203 (34%), Gaps = 67/203 (33%)

Query: 3   TILPQ--WIMTRI------DSIRDEVVEHKVVD---NWFLMPSWFPVTTIVVVYLIFVKY 51
           ++ P    I T +      D I+ +V+   VV+    + L+      +TI +   I+++ 
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMV--VVNKLHKYSLVEKQPKESTISI-PSIYLEL 435

Query: 52  VGPKMMENRKPYNIKYIILAYNLIQTLYNANIVA-----YFCEASYL-YYISKI-----I 100
                +EN    +   I+  YN+ +T  + +++      YF   S++ +++  I     +
Sbjct: 436 KVK--LENEYALHRS-IVDHYNIPKTFDSDDLIPPYLDQYFY--SHIGHHLKNIEHPERM 490

Query: 101 DLLDTIFFVLRKKNSHITFLHVYHHAMMVLTTWAFLRYFKGEQGIFIGLLNSLVHVVMYS 160
            L   +F   R       FL               +R+          +LN+L  +  Y 
Sbjct: 491 TLFRMVFLDFR-------FLE------------QKIRHDSTAWNASGSILNTLQQLKFY- 530

Query: 161 YYFLAALGPEVQKYLWWKKYITK 183
                            K YI  
Sbjct: 531 -----------------KPYICD 536



 Score = 27.5 bits (60), Expect = 3.1
 Identities = 28/204 (13%), Positives = 61/204 (29%), Gaps = 71/204 (34%)

Query: 3   TILPQWIMTRIDSIRDEVVEH-----KVV-----------DNWFLMPSWFPVTTIVVVYL 46
           ++L +++  R   +  EV+        ++           DNW  +     +TTI+    
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD-KLTTII---E 360

Query: 47  IFVKYVGPKMMENRKPY----------NIKYIILAYNLIQTLYNA-------NIVAYFCE 89
             +  + P   E RK +          +I  I+L       ++          +V    +
Sbjct: 361 SSLNVLEPA--EYRKMFDRLSVFPPSAHIPTILL-----SLIWFDVIKSDVMVVVNKLHK 413

Query: 90  AS--------YLYYISKIIDLLDTIFFVLRKKNSHITFLHVYHHAMMVLTTWAFLRYFKG 141
            S            I        +I+  L+ K  +   LH       ++  +   + F  
Sbjct: 414 YSLVEKQPKESTISI-------PSIYLELKVKLENEYALH-----RSIVDHYNIPKTFDS 461

Query: 142 EQGIFIGLLNSLVHVVMYSYYFLA 165
           +            ++  Y Y  + 
Sbjct: 462 DDL-------IPPYLDQYFYSHIG 478


>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc
            finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus
            musculus} PDB: 3av5_A* 3av6_A*
          Length = 1330

 Score = 26.5 bits (57), Expect = 7.7
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 14/54 (25%)

Query: 42   VVVYLIFVKYVGPKM--MEN-------RKPYNIKYII-----LAYNLIQTLYNA 81
            VV +L +  Y  P+   +EN       R+   +K  +     + Y     +  A
Sbjct: 961  VVSFLSYCDYYRPRFFLLENVRNFVSYRRSMVLKLTLRCLVRMGYQCTFGVLQA 1014


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.331    0.143    0.460 

Gapped
Lambda     K      H
   0.267   0.0623    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,060,088
Number of extensions: 173571
Number of successful extensions: 345
Number of sequences better than 10.0: 1
Number of HSP's gapped: 345
Number of HSP's successfully gapped: 17
Length of query: 188
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 100
Effective length of database: 4,244,745
Effective search space: 424474500
Effective search space used: 424474500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 54 (24.8 bits)