RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12385
         (188 letters)



>d1so9a_ b.146.1.1 (A:) Cytochrome C oxidase assembly protein CtaG
           {Rhizobium meliloti (Sinorhizobium meliloti) [TaxId:
           382]}
          Length = 131

 Score = 25.2 bits (55), Expect = 3.9
 Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 4/32 (12%)

Query: 51  YVGPKMMENRKPYNIKYIILAYNLIQTLYNAN 82
           +V P++++  +   IK + L+Y    T Y   
Sbjct: 101 FVDPEIVKPVETQGIKTLTLSY----TFYPRE 128


>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 1449

 Score = 25.6 bits (55), Expect = 4.4
 Identities = 14/107 (13%), Positives = 36/107 (33%), Gaps = 3/107 (2%)

Query: 1   MDTILPQWIMTRIDSIRDEVVEHKVVDNWFLMPSWFPVTTIVVVYLIF---VKYVGPKMM 57
           +  +  + I+     I  +       +  F  P W  +T + V        + +   +  
Sbjct: 198 LRVLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLPVPPPPVRPSISFNESQRG 257

Query: 58  ENRKPYNIKYIILAYNLIQTLYNANIVAYFCEASYLYYISKIIDLLD 104
           E+   + +  I+ A   ++TL +     +  E +       +   +D
Sbjct: 258 EDDLTFKLADILKANISLETLEHNGAPHHAIEEAESLLQFHVATYMD 304


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.143    0.460 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 765,792
Number of extensions: 34406
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 12
Length of query: 188
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 108
Effective length of database: 1,309,196
Effective search space: 141393168
Effective search space used: 141393168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 50 (23.5 bits)