Query psy12386
Match_columns 161
No_of_seqs 114 out of 904
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 17:49:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12386.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12386hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3071|consensus 100.0 2.9E-55 6.2E-60 365.7 10.0 160 1-160 107-269 (274)
2 PF01151 ELO: GNS1/SUR4 family 100.0 1.4E-52 3E-57 345.8 13.3 153 2-157 89-250 (250)
3 PTZ00251 fatty acid elongase; 100.0 1.7E-50 3.7E-55 337.8 13.1 152 2-158 110-271 (272)
4 KOG3072|consensus 100.0 2.2E-41 4.8E-46 281.4 3.1 145 3-152 118-268 (282)
5 PF07851 TMPIT: TMPIT-like pro 54.7 54 0.0012 28.7 6.9 122 25-151 171-319 (330)
6 KOG3071|consensus 46.7 22 0.00048 30.2 3.2 71 90-160 192-266 (274)
7 COG4858 Uncharacterized membra 30.2 2E+02 0.0044 23.5 6.1 21 76-96 145-165 (226)
8 PF04387 PTPLA: Protein tyrosi 26.7 2.5E+02 0.0055 21.7 6.0 81 15-97 5-86 (164)
9 PRK00753 psbL photosystem II r 22.0 1.5E+02 0.0033 17.8 3.0 26 121-146 13-38 (39)
10 PF03605 DcuA_DcuB: Anaerobic 19.4 1.1E+02 0.0024 27.2 2.9 30 25-61 76-105 (364)
No 1
>KOG3071|consensus
Probab=100.00 E-value=2.9e-55 Score=365.69 Aligned_cols=160 Identities=48% Similarity=0.894 Sum_probs=151.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEeeeehhhhHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHHH
Q psy12386 1 MMFCEASYLYYISKIIDLLDTIFFVLRKKNSHITFLHVYHHAMMVLTTWAFLRYFKGEQGIFIGLLNSLVHVVMYSYYFL 80 (161)
Q Consensus 1 ~~~~~~~~~f~lsK~~El~DTvf~VLrKk~~qlsfLHvyHH~~~~~~~w~~~~~~~~~~~~~~~~~Ns~VH~iMY~YY~l 80 (161)
+|+++++|+||+||+.|++||+|+|||||+||+||||+|||++|++.+|.++++.++|+.++.+.+|++||++||+||++
T Consensus 107 ~r~~~~~~~yylsKflel~DTvFfVLRKk~rqlsFLHvyHH~~m~~~~~~~l~~~~~g~~~~~~~lNs~VHviMY~YYfl 186 (274)
T KOG3071|consen 107 LRERFWSYLYYLSKFLELLDTVFFVLRKKDRQLSFLHVYHHGVMAFLSYLWLKFYGGGHGFFAILLNSFVHVIMYGYYFL 186 (274)
T ss_pred eeehHHHHHHHHHHHHHHHhheeeEEEccCCceEEEEEEecchHHHhhhheeEEeCCceeeeeeehhhhHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred HHhCCCccchhhhhhhhccccchhhHHHHhhhhhh-ccc-CCCCcHH-HHHHHHHHHHHHHHHHHHHhHhhccCCCcccc
Q psy12386 81 AALGPEVQKYLWWKKYITKFQLTQFALFCIHQLSL-IVL-SCDMPVA-LTYYIFFQAVVMCVLFGNFYYQTYTKKHNKQA 157 (161)
Q Consensus 81 ~a~g~~~~~~~~~k~~iT~~QivQF~~~~~~~~~~-~~~-~C~~~~~-~~~~~~~~~~~~l~LF~~Fy~~~Y~~~~~~~~ 157 (161)
+|+||++++.+|||+++|.+|++||++..+|..+. ++. ||++|.+ +.+.+.+.+++|++||+|||+|+|.|++++++
T Consensus 187 sa~G~~v~~~lWWkky~t~vQlvqf~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~l~LF~nFY~~tY~k~~~~~~ 266 (274)
T KOG3071|consen 187 SAFGPRVQWYLWWKKYITIVQLVQFLILFVHTLYVHLFKPGCCFGIGAWAFNGSVINVSFLLLFSNFYIKTYKKPKKKKA 266 (274)
T ss_pred HhhCcCccccchHHHHHHHHHHHHHHHHHHHHhheeeecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 99999999999999999999999999999999988 554 8999988 78888889999999999999999999877776
Q ss_pred ccc
Q psy12386 158 KAT 160 (161)
Q Consensus 158 k~~ 160 (161)
|++
T Consensus 267 ~~~ 269 (274)
T KOG3071|consen 267 KKK 269 (274)
T ss_pred hhh
Confidence 554
No 2
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=100.00 E-value=1.4e-52 Score=345.84 Aligned_cols=153 Identities=44% Similarity=0.742 Sum_probs=140.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEeeeehhhhHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHH
Q psy12386 2 MFCEASYLYYISKIIDLLDTIFFVLRKKNSHITFLHVYHHAMMVLTTWAFLRYFKGEQGIFIGLLNSLVHVVMYSYYFLA 81 (161)
Q Consensus 2 ~~~~~~~~f~lsK~~El~DTvf~VLrKk~~qlsfLHvyHH~~~~~~~w~~~~~~~~~~~~~~~~~Ns~VH~iMY~YY~l~ 81 (161)
++..|.|+|++||++|++||+|+||||| |+||||||||+++++.+|.++++.++|+.++++.+|++||++||+||+++
T Consensus 89 ~~~~~~~~fylSK~~EllDTvflvLrkK--~lsfLHvYHH~~~~~~~w~~~~~~~~~~~~~~~~~N~~VH~iMY~YY~l~ 166 (250)
T PF01151_consen 89 RVGFWYWLFYLSKYYELLDTVFLVLRKK--QLSFLHVYHHASTLLYCWISYKYGPGGQIWFIAALNSFVHVIMYSYYFLS 166 (250)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHhhhhhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999 89999999999999999999999888999999999999999999999999
Q ss_pred HhCCCccchhhhhhhhccccchhhHHHHhhhhhhccc------CC---CCcHHHHHHHHHHHHHHHHHHHHHhHhhccCC
Q psy12386 82 ALGPEVQKYLWWKKYITKFQLTQFALFCIHQLSLIVL------SC---DMPVALTYYIFFQAVVMCVLFGNFYYQTYTKK 152 (161)
Q Consensus 82 a~g~~~~~~~~~k~~iT~~QivQF~~~~~~~~~~~~~------~C---~~~~~~~~~~~~~~~~~l~LF~~Fy~~~Y~~~ 152 (161)
|+|.| +.+.||||+||.+||+||+++++++.+.... +| ++|......+.++++++++||.|||+|+|.+|
T Consensus 167 a~g~~-~~~~~~k~~IT~~Qi~QF~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~s~l~LF~~Fy~~~Y~~~ 245 (250)
T PF01151_consen 167 ALGIR-KVPRWWKKYITSLQIVQFVIGIVHTVYALYYYFFPGGDCDTSGYPKFNAILGLVYYVSYLYLFINFYIKSYIKK 245 (250)
T ss_pred hcccc-cchhHHHHHHhHHhhhhhHHHHHHHHHHhheeccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 99964 2346999999999999999999998888664 89 55688899999999999999999999999999
Q ss_pred Ccccc
Q psy12386 153 HNKQA 157 (161)
Q Consensus 153 ~~~~~ 157 (161)
+++|+
T Consensus 246 ~~~k~ 250 (250)
T PF01151_consen 246 KKKKK 250 (250)
T ss_pred CCCCC
Confidence 88764
No 3
>PTZ00251 fatty acid elongase; Provisional
Probab=100.00 E-value=1.7e-50 Score=337.83 Aligned_cols=152 Identities=25% Similarity=0.350 Sum_probs=131.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEeeeehhhhHHHHhhhhhhccccchhH-HHHHHHHHHHHHHHHHHHH
Q psy12386 2 MFCEASYLYYISKIIDLLDTIFFVLRKKNSHITFLHVYHHAMMVLTTWAFLRYFKGEQGI-FIGLLNSLVHVVMYSYYFL 80 (161)
Q Consensus 2 ~~~~~~~~f~lsK~~El~DTvf~VLrKk~~qlsfLHvyHH~~~~~~~w~~~~~~~~~~~~-~~~~~Ns~VH~iMY~YY~l 80 (161)
+++.|+|+|++||++|++||+|+||||| |+||||||||++|++.+|..+. ++++.. +++.+|++||++||+||++
T Consensus 110 ~~~~~~~~f~lsK~~El~DTvF~VLRKK--qvsFLHvYHH~~~~~~~w~~~~--~g~~~~~~~~~lNs~VH~iMY~YY~l 185 (272)
T PTZ00251 110 KVGVAMGLFSISKVPEFGDTFFLIMGGK--KLPFLSWFHHVTIFLYAWMSYQ--QGSSIWICAAAMNYFVHSIMYFYFAL 185 (272)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhcCC--CchHHHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999 8999999999999999999874 334443 3699999999999999999
Q ss_pred HHhCCCccchhhhhhhhccccchhhHHHHhhhhhhcc--------cCCCCcH-HHHHHHHHHHHHHHHHHHHHhHhhccC
Q psy12386 81 AALGPEVQKYLWWKKYITKFQLTQFALFCIHQLSLIV--------LSCDMPV-ALTYYIFFQAVVMCVLFGNFYYQTYTK 151 (161)
Q Consensus 81 ~a~g~~~~~~~~~k~~iT~~QivQF~~~~~~~~~~~~--------~~C~~~~-~~~~~~~~~~~~~l~LF~~Fy~~~Y~~ 151 (161)
+|+|++. ...||||+||.+||+||+++++++.+.+. .+|+++. .....+.++++++++||+|||+|+|.|
T Consensus 186 sa~g~~~-~~~~~kk~IT~lQi~Qfv~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~s~l~LF~~Fy~~~Y~~ 264 (272)
T PTZ00251 186 SEAGFKK-LVKPFAMYITLLQITQMVGGLFVSGYVIVQKLTKGDPKGCSGTTMATARGQLMIYIFNFYLFSEMFVKGYVL 264 (272)
T ss_pred HhcCCch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999862 22359999999999999999998887753 2699877 667777889999999999999999999
Q ss_pred CCccccc
Q psy12386 152 KHNKQAK 158 (161)
Q Consensus 152 ~~~~~~k 158 (161)
|||+++-
T Consensus 265 ~~~~~~~ 271 (272)
T PTZ00251 265 PRKAKAG 271 (272)
T ss_pred CCCCCCC
Confidence 8776653
No 4
>KOG3072|consensus
Probab=100.00 E-value=2.2e-41 Score=281.44 Aligned_cols=145 Identities=35% Similarity=0.523 Sum_probs=128.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEeeeehhhhHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy12386 3 FCEASYLYYISKIIDLLDTIFFVLRKKNSHITFLHVYHHAMMVLTTWAFLRYFKGEQGIFIGLLNSLVHVVMYSYYFLAA 82 (161)
Q Consensus 3 ~~~~~~~f~lsK~~El~DTvf~VLrKk~~qlsfLHvyHH~~~~~~~w~~~~~~~~~~~~~~~~~Ns~VH~iMY~YY~l~a 82 (161)
-..|+|+|.+||..|++||+|+|||||| ++|||||||+.++++.|..++... +...|.+.+|.+||++||+||+++|
T Consensus 118 ~~fW~~~fvlSK~~ElgDT~FiVLRKrP--liFlHWYHHi~~~iy~~~~y~~~~-a~~rw~i~mNy~vHa~MY~YY~lrs 194 (282)
T KOG3072|consen 118 SGFWSWLFVLSKAPELGDTIFIVLRKRP--LIFLHWYHHILVLIYAWHSYIEKV-AWGRWFIWMNYLVHAFMYSYYALRS 194 (282)
T ss_pred HHHHHHHHHHHhhhhhhceeEEEeccCc--cEEEechhhheeeeeeeeecccCC-cCceEEEEEehhHHHHHHHHHHHHH
Confidence 3589999999999999999999999985 999999999999999999998554 4455799999999999999999999
Q ss_pred hCCCccchhhhhhhhccccchhhHHHHhhhhhhcc----c--CCCCcHHHHHHHHHHHHHHHHHHHHHhHhhccCC
Q psy12386 83 LGPEVQKYLWWKKYITKFQLTQFALFCIHQLSLIV----L--SCDMPVALTYYIFFQAVVMCVLFGNFYYQTYTKK 152 (161)
Q Consensus 83 ~g~~~~~~~~~k~~iT~~QivQF~~~~~~~~~~~~----~--~C~~~~~~~~~~~~~~~~~l~LF~~Fy~~~Y~~~ 152 (161)
+|.|+|+ +..+.||.+||+||+++.....-... . +|+.+.....++.+++.+|++||+|||.++|+++
T Consensus 195 l~ir~Pk--~vam~iTtlQi~Qm~i~~~i~~~v~~~~~~~~~~c~~s~~~~~l~~~my~syfvLf~~Ff~~aYi~~ 268 (282)
T KOG3072|consen 195 LGIRLPK--SVAMAITTLQIVQMVIGCYIGTHVYYVKHTHQLLCQQSYKNLSLCFLMYISYFVLFANFFYQAYIKK 268 (282)
T ss_pred cCCCCCh--HHHHHHHHHHHHHHHHHHheeeEEEEEEecCCeeeeeeccchhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9998875 56999999999999998764443221 1 3999888888999999999999999999999997
No 5
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=54.67 E-value=54 Score=28.67 Aligned_cols=122 Identities=20% Similarity=0.293 Sum_probs=67.9
Q ss_pred HHhcCCCceeEeeeehhhhHHHHhhhhhhccccchhH--------HHHHHHHHHHHHHHHH-----HHHHHhCCCccchh
Q psy12386 25 VLRKKNSHITFLHVYHHAMMVLTTWAFLRYFKGEQGI--------FIGLLNSLVHVVMYSY-----YFLAALGPEVQKYL 91 (161)
Q Consensus 25 VLrKk~~qlsfLHvyHH~~~~~~~w~~~~~~~~~~~~--------~~~~~Ns~VH~iMY~Y-----Y~l~a~g~~~~~~~ 91 (161)
||+-..+++--==++||-.....+-..+-.+ +|..+ ..++.-++|+.+=|.| |-+.|+|.+.+..+
T Consensus 171 IL~~NGS~Ik~WW~~HHy~s~~~s~v~Ltwp-~~~~~~~fr~~fl~f~~~~~~vq~lQ~~YQ~~~Ly~l~AlG~~~~mdv 249 (330)
T PF07851_consen 171 ILIVNGSRIKGWWVFHHYISTFLSGVMLTWP-DGEAYQKFRPQFLLFSLYQSVVQFLQYRYQRGCLYRLRALGKRHNMDV 249 (330)
T ss_pred hhccCCCcchHHHHHHHHHHHHHHhccccCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccCcccee
Confidence 3555555555555789988888877777654 44332 2455567777777766 78999997654332
Q ss_pred -------hhh-------hhhccccchhhHHHHhhhhhhcccCCCCcHHHHHHHHHHHHHHHHHHHHHhHhhccC
Q psy12386 92 -------WWK-------KYITKFQLTQFALFCIHQLSLIVLSCDMPVALTYYIFFQAVVMCVLFGNFYYQTYTK 151 (161)
Q Consensus 92 -------~~k-------~~iT~~QivQF~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~l~LF~~Fy~~~Y~~ 151 (161)
|.- |.+-..|..|+-.+....-....++|. .|....+ ....++.-.+||+--..+-
T Consensus 250 t~eG~~s~~~~~L~fLlPfLf~~~~~q~yn~~~l~~~~~~~~~~---ewqv~~~-~~~f~~l~~gN~~tt~~v~ 319 (330)
T PF07851_consen 250 TVEGFQSWMWRGLTFLLPFLFFGQFFQLYNAYTLFELSYHPECR---EWQVFVC-GLLFLILFLGNFFTTLKVV 319 (330)
T ss_pred eecccccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHcCccch---HHHHHHH-HHHHHHHHhhhHHHHHHHH
Confidence 211 444455666665543322222336787 2322222 1122333457888755543
No 6
>KOG3071|consensus
Probab=46.67 E-value=22 Score=30.24 Aligned_cols=71 Identities=18% Similarity=0.173 Sum_probs=50.1
Q ss_pred hhhhhh-hhccccchhhHHHHhhhhhhcccCCCCc--HHHHHHHHHHHHHHHHHHHHHhHhhccCCCccc-cccc
Q psy12386 90 YLWWKK-YITKFQLTQFALFCIHQLSLIVLSCDMP--VALTYYIFFQAVVMCVLFGNFYYQTYTKKHNKQ-AKAT 160 (161)
Q Consensus 90 ~~~~k~-~iT~~QivQF~~~~~~~~~~~~~~C~~~--~~~~~~~~~~~~~~l~LF~~Fy~~~Y~~~~~~~-~k~~ 160 (161)
..+|++ +.|-+|++||+..++...+.....=-.| ............+..+.|.--|.+=|.+.-+++ +++.
T Consensus 192 ~v~~~lWWkky~t~vQlvqf~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~l~LF~nFY~~tY~k~~~~~~ 266 (274)
T KOG3071|consen 192 RVQWYLWWKKYITIVQLVQFLILFVHTLYVHLFKPGCCFGIGAWAFNGSVINVSFLLLFSNFYIKTYKKPKKKKA 266 (274)
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHhheeeecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 357788 8999999999999999776543211122 234444555668889999999999999986664 5543
No 7
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=30.22 E-value=2e+02 Score=23.54 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=14.0
Q ss_pred HHHHHHHhCCCccchhhhhhh
Q psy12386 76 SYYFLAALGPEVQKYLWWKKY 96 (161)
Q Consensus 76 ~YY~l~a~g~~~~~~~~~k~~ 96 (161)
.||+-+-.|.+.+++-+||-.
T Consensus 145 y~y~yr~~ad~sqr~~~~K~~ 165 (226)
T COG4858 145 YYYAYRMRADNSQRPGTWKYL 165 (226)
T ss_pred HHHHHHhhcccccCCchHHHH
Confidence 355566667777777778744
No 8
>PF04387 PTPLA: Protein tyrosine phosphatase-like protein, PTPLA; InterPro: IPR007482 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This family includes the mammalian protein tyrosine phosphatase-like protein, PTPLA. A significant variation of PTPLA from other protein tyrosine phosphatases is the presence of proline instead of catalytic arginine at the active site. It is thought that PTPLA proteins have a role in the development, differentiation, and maintenance of a number of tissue types [].
Probab=26.68 E-value=2.5e+02 Score=21.73 Aligned_cols=81 Identities=22% Similarity=0.409 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhcCCCceeEeeeehhhhHHHHhhhhhhccccchhH-HHHHHHHHHHHHHHHHHHHHHhCCCccchhhh
Q psy12386 15 IIDLLDTIFFVLRKKNSHITFLHVYHHAMMVLTTWAFLRYFKGEQGI-FIGLLNSLVHVVMYSYYFLAALGPEVQKYLWW 93 (161)
Q Consensus 15 ~~El~DTvf~VLrKk~~qlsfLHvyHH~~~~~~~w~~~~~~~~~~~~-~~~~~Ns~VH~iMY~YY~l~a~g~~~~~~~~~ 93 (161)
+.|.+...+=+.|-+. ..+++++.-=..+++..........+.... .....=++.-++=|.||+.+-+|..+ ..+.|
T Consensus 5 ~lEi~h~~~Glv~S~~-~~t~~Qv~sR~~vv~~v~~~~p~~~~~~~~~~l~~aWsl~EviRY~yY~~~l~~~~p-~~L~W 82 (164)
T PF04387_consen 5 VLEILHAALGLVRSPV-LTTFMQVFSRLFVVWGVIYPFPEVQSSPAVPLLLIAWSLTEVIRYPYYALKLLGIVP-YWLTW 82 (164)
T ss_pred HHHHHHHHhccccCcc-HHHHHHHHHHHHeehhhhccccccccccchhhHHHHHHhhhcchhHHHHHHhcCCCc-hHHHH
Confidence 3455555554444432 456677766655544443333322111111 12333488899999999999988753 44556
Q ss_pred hhhh
Q psy12386 94 KKYI 97 (161)
Q Consensus 94 k~~i 97 (161)
=||=
T Consensus 83 LRYs 86 (164)
T PF04387_consen 83 LRYS 86 (164)
T ss_pred HHHh
Confidence 5653
No 9
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=22.01 E-value=1.5e+02 Score=17.81 Aligned_cols=26 Identities=15% Similarity=0.521 Sum_probs=19.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhH
Q psy12386 121 DMPVALTYYIFFQAVVMCVLFGNFYY 146 (161)
Q Consensus 121 ~~~~~~~~~~~~~~~~~l~LF~~Fy~ 146 (161)
+-.+.-.+++..-.....+||+++|.
T Consensus 13 ELNRTSLy~GlLlifvl~vLFssYff 38 (39)
T PRK00753 13 ELNRTSLYLGLLLVFVLGILFSSYFF 38 (39)
T ss_pred eechhhHHHHHHHHHHHHHHHHhhcc
Confidence 33456667777777888899998874
No 10
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane
Probab=19.40 E-value=1.1e+02 Score=27.18 Aligned_cols=30 Identities=33% Similarity=0.351 Sum_probs=23.2
Q ss_pred HHhcCCCceeEeeeehhhhHHHHhhhhhhccccchhH
Q psy12386 25 VLRKKNSHITFLHVYHHAMMVLTTWAFLRYFKGEQGI 61 (161)
Q Consensus 25 VLrKk~~qlsfLHvyHH~~~~~~~w~~~~~~~~~~~~ 61 (161)
+|||+|++++|| .++.+|...-....|+..
T Consensus 76 ~LRk~Pk~It~l-------AP~vt~~~T~~~GTgh~a 105 (364)
T PF03605_consen 76 ILRKNPKYITFL-------APLVTYLFTFLAGTGHVA 105 (364)
T ss_pred HHHhCCCcEEEe-------hhHHHHHHHHHhcccHHH
Confidence 599999999996 577888776666666654
Done!