Query psy12386
Match_columns 161
No_of_seqs 114 out of 904
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 17:50:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12386.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12386hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_L Photosystem II reaction 26.0 97 0.0033 17.6 4.2 27 120-146 10-36 (37)
2 2knc_A Integrin alpha-IIB; tra 17.7 1.9E+02 0.0064 17.7 4.5 7 143-149 37-43 (54)
3 2rdd_B UPF0092 membrane protei 15.8 44 0.0015 18.6 0.6 8 139-146 11-18 (37)
4 4dkl_A MU-type opioid receptor 9.8 2E+02 0.0069 22.8 3.1 15 63-77 427-441 (464)
5 3vw7_A Proteinase-activated re 9.4 1.5E+02 0.0053 23.8 2.3 16 62-77 435-450 (484)
6 3eml_A Human adenosine A2A rec 8.7 2.4E+02 0.008 22.6 3.1 17 62-78 437-453 (488)
7 2wb6_A AFV1-102; archaeal viru 8.5 1.7E+02 0.0059 20.2 1.8 15 15-29 40-54 (130)
8 2ks9_A Substance-P receptor; w 8.5 2.5E+02 0.0086 21.5 3.1 15 63-77 293-307 (364)
9 2koe_A Human cannabinoid recep 8.1 51 0.0018 17.6 -0.9 16 60-75 6-21 (40)
10 4eiy_A Adenosine receptor A2A/ 7.9 2.7E+02 0.0092 21.9 3.1 19 60-78 394-412 (447)
No 1
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=25.98 E-value=97 Score=17.58 Aligned_cols=27 Identities=15% Similarity=0.526 Sum_probs=21.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHhH
Q psy12386 120 CDMPVALTYYIFFQAVVMCVLFGNFYY 146 (161)
Q Consensus 120 C~~~~~~~~~~~~~~~~~l~LF~~Fy~ 146 (161)
-+-.+.-.+++..-.....+||+++|.
T Consensus 10 VELNRTSLy~GLLlifvlavlFssyff 36 (37)
T 3arc_L 10 VELNRTSLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp BCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceechhhHHHHHHHHHHHHHHhhhhcc
Confidence 444566777888888888999999875
No 2
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=17.67 E-value=1.9e+02 Score=17.72 Aligned_cols=7 Identities=14% Similarity=0.505 Sum_probs=3.5
Q ss_pred HHhHhhc
Q psy12386 143 NFYYQTY 149 (161)
Q Consensus 143 ~Fy~~~Y 149 (161)
-||.|++
T Consensus 37 GFFkR~~ 43 (54)
T 2knc_A 37 GFFKRNR 43 (54)
T ss_dssp HHTTTTC
T ss_pred CcccCCC
Confidence 4555444
No 3
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=15.79 E-value=44 Score=18.65 Aligned_cols=8 Identities=38% Similarity=0.538 Sum_probs=3.3
Q ss_pred HHHHHHhH
Q psy12386 139 VLFGNFYY 146 (161)
Q Consensus 139 ~LF~~Fy~ 146 (161)
++|.-||.
T Consensus 11 ~~~~ifYF 18 (37)
T 2rdd_B 11 VFGLIFYF 18 (37)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444443
No 4
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=9.79 E-value=2e+02 Score=22.78 Aligned_cols=15 Identities=33% Similarity=0.755 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy12386 63 IGLLNSLVHVVMYSY 77 (161)
Q Consensus 63 ~~~~Ns~VH~iMY~Y 77 (161)
.+.+|+.++|+.|++
T Consensus 427 L~~~ns~~NPiIY~~ 441 (464)
T 4dkl_A 427 LGYTNSCLNPVLYAF 441 (464)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHhhhchhHHHHHH
Confidence 678899999999986
No 5
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=9.43 E-value=1.5e+02 Score=23.75 Aligned_cols=16 Identities=13% Similarity=0.472 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy12386 62 FIGLLNSLVHVVMYSY 77 (161)
Q Consensus 62 ~~~~~Ns~VH~iMY~Y 77 (161)
+.+.+|+.++|+.|++
T Consensus 435 ~L~~~ns~iNPiIY~~ 450 (484)
T 3vw7_A 435 CVSSISCCIDPLIYYY 450 (484)
T ss_dssp HHHTTHHHHHHHHHHH
T ss_pred HHHHhccccchHHHHH
Confidence 4566899999999986
No 6
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=8.68 E-value=2.4e+02 Score=22.55 Aligned_cols=17 Identities=29% Similarity=0.553 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy12386 62 FIGLLNSLVHVVMYSYY 78 (161)
Q Consensus 62 ~~~~~Ns~VH~iMY~YY 78 (161)
+.+.+|+.++|++|.+.
T Consensus 437 ~l~~~ns~~NPiIY~~~ 453 (488)
T 3eml_A 437 VLSHTNSVVNPFIYAYR 453 (488)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhchhhhhhc
Confidence 46789999999999863
No 7
>2wb6_A AFV1-102; archaeal virus, viral protein; 1.95A {Acidianus filamentous virus 1}
Probab=8.48 E-value=1.7e+02 Score=20.24 Aligned_cols=15 Identities=33% Similarity=0.773 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhcC
Q psy12386 15 IIDLLDTIFFVLRKK 29 (161)
Q Consensus 15 ~~El~DTvf~VLrKk 29 (161)
..||+|..|+|..|-
T Consensus 40 msefldsmflviekl 54 (130)
T 2wb6_A 40 MSEFLDSMFLVIEKL 54 (130)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh
Confidence 469999999999763
No 8
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=8.46 E-value=2.5e+02 Score=21.47 Aligned_cols=15 Identities=7% Similarity=0.456 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy12386 63 IGLLNSLVHVVMYSY 77 (161)
Q Consensus 63 ~~~~Ns~VH~iMY~Y 77 (161)
.+.+|+.+||+.|.+
T Consensus 293 l~~~ns~~NPiiY~~ 307 (364)
T 2ks9_A 293 LAMSSTMYNPIIYCC 307 (364)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 567899999999986
No 9
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}
Probab=8.07 E-value=51 Score=17.65 Aligned_cols=16 Identities=38% Similarity=0.625 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHH
Q psy12386 60 GIFIGLLNSLVHVVMY 75 (161)
Q Consensus 60 ~~~~~~~Ns~VH~iMY 75 (161)
..+.+.+|+.+.|+.|
T Consensus 6 ~~~l~~~ns~lNPiIY 21 (40)
T 2koe_A 6 ASMLCLLNSTVNPIIY 21 (40)
T ss_dssp HHHHHHHHHHSSTTTT
T ss_pred HHHHHHHHHHHHHHHH
No 10
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=7.91 E-value=2.7e+02 Score=21.93 Aligned_cols=19 Identities=32% Similarity=0.574 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy12386 60 GIFIGLLNSLVHVVMYSYY 78 (161)
Q Consensus 60 ~~~~~~~Ns~VH~iMY~YY 78 (161)
..+.+.+|+.++|+.|.+.
T Consensus 394 ~~~l~~~ns~~NPiIY~~~ 412 (447)
T 4eiy_A 394 AIVLSHTNSVVNPFIYAYR 412 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchhhhHhc
Done!