Query psy12386
Match_columns 161
No_of_seqs 114 out of 904
Neff 6.2
Searched_HMMs 13730
Date Fri Aug 16 17:50:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12386.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12386hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 27.5 42 0.003 17.7 4.1 27 120-146 10-36 (37)
2 d1vf5c3 f.23.23.1 (C:250-286) 22.0 17 0.0012 19.5 1.2 13 18-30 17-29 (37)
3 d1q90a3 f.23.23.1 (A:248-292) 17.6 14 0.001 20.6 0.2 13 18-30 16-28 (45)
4 d1iyra_ a.164.1.1 (A:) C-termi 6.3 81 0.0059 19.5 0.9 15 18-32 13-27 (83)
5 d1khva_ e.8.1.4 (A:) Viral RNA 6.2 1.8E+02 0.013 22.9 3.5 25 56-81 303-327 (497)
6 d1u19a_ f.13.1.2 (A:) Rhodopsi 5.3 1.1E+02 0.0082 21.4 1.4 15 63-77 294-308 (348)
7 d1tuba2 d.79.2.1 (A:246-440) T 5.1 1.1E+02 0.0079 21.0 1.2 23 11-40 142-164 (195)
8 d1ra6a_ e.8.1.4 (A:) Viral RNA 5.0 2.4E+02 0.018 21.8 3.5 26 56-82 287-312 (461)
9 d1xr5a_ e.8.1.4 (A:) Viral RNA 4.6 2.4E+02 0.018 21.8 3.2 27 56-83 286-312 (460)
10 d1sh0a_ e.8.1.4 (A:) Viral RNA 4.6 3E+02 0.022 21.6 3.7 28 56-84 294-321 (502)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=27.49 E-value=42 Score=17.65 Aligned_cols=27 Identities=15% Similarity=0.526 Sum_probs=20.3
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHhH
Q psy12386 120 CDMPVALTYYIFFQAVVMCVLFGNFYY 146 (161)
Q Consensus 120 C~~~~~~~~~~~~~~~~~l~LF~~Fy~ 146 (161)
.+-.+...++++......-+||+++|.
T Consensus 10 veLNrtsLy~GlLlifvl~vLFssYfF 36 (37)
T d2axtl1 10 VELNRTSLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp BCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 344566677777777888899999875
No 2
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=22.04 E-value=17 Score=19.50 Aligned_cols=13 Identities=31% Similarity=0.764 Sum_probs=10.0
Q ss_pred HHHHHHHHHhcCC
Q psy12386 18 LLDTIFFVLRKKN 30 (161)
Q Consensus 18 l~DTvf~VLrKk~ 30 (161)
++--+++||+||+
T Consensus 17 ~laQi~lVlKKKQ 29 (37)
T d1vf5c3 17 MLAQLMLILKKKQ 29 (37)
T ss_dssp HHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHH
Confidence 4556789999984
No 3
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=17.56 E-value=14 Score=20.59 Aligned_cols=13 Identities=46% Similarity=0.828 Sum_probs=10.3
Q ss_pred HHHHHHHHHhcCC
Q psy12386 18 LLDTIFFVLRKKN 30 (161)
Q Consensus 18 l~DTvf~VLrKk~ 30 (161)
.+--+++||+||+
T Consensus 16 ~laQi~LVLKKKQ 28 (45)
T d1q90a3 16 LLTQVLLVLKKKQ 28 (45)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4567899999984
No 4
>d1iyra_ a.164.1.1 (A:) C-terminal domain of DFF45/ICAD (DFF-C domain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.33 E-value=81 Score=19.51 Aligned_cols=15 Identities=33% Similarity=0.461 Sum_probs=11.2
Q ss_pred HHHHHHHHHhcCCCc
Q psy12386 18 LLDTIFFVLRKKNSH 32 (161)
Q Consensus 18 l~DTvf~VLrKk~~q 32 (161)
+.++++.+||+|+.|
T Consensus 13 lss~iL~~LKeK~aP 27 (83)
T d1iyra_ 13 LASHILTALREKQAP 27 (83)
T ss_dssp CCHHHHHHHHTTCCT
T ss_pred HHHHHHHHHccCCCc
Confidence 457888899988744
No 5
>d1khva_ e.8.1.4 (A:) Viral RNA polymerase {Rabbit hemorrhagic disease virus [TaxId: 11976]}
Probab=6.22 E-value=1.8e+02 Score=22.87 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=18.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHH
Q psy12386 56 KGEQGIFIGLLNSLVHVVMYSYYFLA 81 (161)
Q Consensus 56 ~~~~~~~~~~~Ns~VH~iMY~YY~l~ 81 (161)
++|+. ..+.+||++|-+|..|=...
T Consensus 303 PSG~p-~Tsi~NSi~N~i~i~~a~~~ 327 (497)
T d1khva_ 303 PSGMP-FTSVINSICHWLLWSAAVYK 327 (497)
T ss_dssp CTTST-THHHHHHHHHHHHHHHHHHH
T ss_pred CCCCc-eeehhhhHHHHHHHHHHHHH
Confidence 45655 48999999999877664333
No 6
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.30 E-value=1.1e+02 Score=21.36 Aligned_cols=15 Identities=13% Similarity=0.266 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy12386 63 IGLLNSLVHVVMYSY 77 (161)
Q Consensus 63 ~~~~Ns~VH~iMY~Y 77 (161)
.+.+|+.++|+.|.+
T Consensus 294 l~~~ns~iNPiIY~~ 308 (348)
T d1u19a_ 294 FAKTSAVYNPVIYIM 308 (348)
T ss_dssp HGGGGGTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 456999999999986
No 7
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]}
Probab=5.11 E-value=1.1e+02 Score=21.01 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCceeEeeeeh
Q psy12386 11 YISKIIDLLDTIFFVLRKKNSHITFLHVYH 40 (161)
Q Consensus 11 ~lsK~~El~DTvf~VLrKk~~qlsfLHvyH 40 (161)
.+.++.+=.|..+ +|| .|||||=
T Consensus 142 ~f~~i~~~Fdkl~---~rk----Aflh~Y~ 164 (195)
T d1tuba2 142 AWARLDHKFDLMY---AKR----AFVHWYV 164 (195)
T ss_dssp HHHHHHHHHHHHT---TTT----CCTTTGG
T ss_pred HHHHHHHHHHHHH---hhc----hHHHHhc
Confidence 3456666666654 444 7999993
No 8
>d1ra6a_ e.8.1.4 (A:) Viral RNA polymerase {Poliovirus type 1, strain Mahoney [TaxId: 12080]}
Probab=5.02 E-value=2.4e+02 Score=21.81 Aligned_cols=26 Identities=12% Similarity=0.194 Sum_probs=18.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy12386 56 KGEQGIFIGLLNSLVHVVMYSYYFLAA 82 (161)
Q Consensus 56 ~~~~~~~~~~~Ns~VH~iMY~YY~l~a 82 (161)
|+|+. ..+.+||++|.++..|=.+.+
T Consensus 287 PSG~~-~T~iiNSi~N~i~i~~a~~~~ 312 (461)
T d1ra6a_ 287 PSGCS-GTSIFNSMINNLIIRTLLLKT 312 (461)
T ss_dssp CTBST-THHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCC-eeEeehhHHHHHHHHHHHHHh
Confidence 45555 489999999999755533433
No 9
>d1xr5a_ e.8.1.4 (A:) Viral RNA polymerase {Human rhinovirus 14, HRV-14 [TaxId: 12131]}
Probab=4.64 E-value=2.4e+02 Score=21.77 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=19.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHh
Q psy12386 56 KGEQGIFIGLLNSLVHVVMYSYYFLAAL 83 (161)
Q Consensus 56 ~~~~~~~~~~~Ns~VH~iMY~YY~l~a~ 83 (161)
++|+. ..+.+||++|.++..|=++.+.
T Consensus 286 PSG~p-~Tsi~NSi~N~i~i~~a~~~~~ 312 (460)
T d1xr5a_ 286 PSGCS-GTSIFNSMINNIIIRTLILDAY 312 (460)
T ss_dssp CTTSS-SHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCC-eeeehhhHHHHHHHHHHHHHHc
Confidence 45554 4899999999998877555443
No 10
>d1sh0a_ e.8.1.4 (A:) Viral RNA polymerase {Norwalk virus [TaxId: 11983]}
Probab=4.59 E-value=3e+02 Score=21.58 Aligned_cols=28 Identities=11% Similarity=0.025 Sum_probs=18.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhC
Q psy12386 56 KGEQGIFIGLLNSLVHVVMYSYYFLAALG 84 (161)
Q Consensus 56 ~~~~~~~~~~~Ns~VH~iMY~YY~l~a~g 84 (161)
|+|+. ..+.+||++|.+...|=+....+
T Consensus 294 PSG~p-~Tsi~NSi~N~i~~~~a~~~~~~ 321 (502)
T d1sh0a_ 294 PSGVP-CTSQWNSIAHWLLTLCALSEVTN 321 (502)
T ss_dssp CTTST-THHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCc-eeeeehhHHHHHHHHHHHHHhhC
Confidence 45655 48999999998876554444444
Done!