RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy12386
         (161 letters)



>gnl|CDD|216332 pfam01151, ELO, GNS1/SUR4 family.  Members of this family are
           involved in long chain fatty acid elongation systems
           that produce the 26-carbon precursors for ceramide and
           sphingolipid synthesis. Predicted to be integral
           membrane proteins, in eukaryotes they are probably
           located on the endoplasmic reticulum. Yeast ELO3 affects
           plasma membrane H+-ATPase activity, and may act on a
           glucose-signaling pathway that controls the expression
           of several genes that are transcriptionally regulated by
           glucose such as PMA1.
          Length = 244

 Score =  152 bits (387), Expect = 4e-47
 Identities = 68/150 (45%), Positives = 85/150 (56%), Gaps = 6/150 (4%)

Query: 8   YLYYISKIIDLLDTIFFVLRKKNSHITFLHVYHHAMMVLTTWAFLRYFKGEQGIFIGLLN 67
           Y  ++SK ++LLDT+F VLRKK   ++FLHVYHHA M+L +W  L+Y  G    FI LLN
Sbjct: 91  YWLFLSKFLELLDTVFLVLRKKQRQLSFLHVYHHATMLLYSWLGLKYGPGGHFWFIALLN 150

Query: 68  SLVHVVMYSYYFLAALGPEVQKYLWWKKYITKFQLTQFALFCIHQLSLIVL----SCDMP 123
           S VHV+MY YYFLAALG      +WWKKYIT+ Q+ QF L   H    +       C  P
Sbjct: 151 SFVHVIMYFYYFLAALGAR-GLPVWWKKYITQLQIIQFVLGLAHVGYALYNYTKGGCGGP 209

Query: 124 VAL-TYYIFFQAVVMCVLFGNFYYQTYTKK 152
                       V    LF NFY ++Y K 
Sbjct: 210 FPKAVRLGLVYYVSYLFLFLNFYIKSYKKP 239


>gnl|CDD|140278 PTZ00251, PTZ00251, fatty acid elongase; Provisional.
          Length = 272

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 12/100 (12%)

Query: 9   LYYISKIIDLLDTIFFVLRKKNSHITFLHVYHHAMMVLTTWAFLRYFKGEQGIFIGL--L 66
           L+ ISK+ +  DT F ++  K   + FL  +HH  + L  W  + Y +G   I+I    +
Sbjct: 117 LFSISKVPEFGDTFFLIMGGKK--LPFLSWFHHVTIFLYAW--MSYQQGSS-IWICAAAM 171

Query: 67  NSLVHVVMYSYYFLAALGPE--VQKYLWWKKYITKFQLTQ 104
           N  VH +MY Y+ L+  G +  V+ +     YIT  Q+TQ
Sbjct: 172 NYFVHSIMYFYFALSEAGFKKLVKPF---AMYITLLQITQ 208


>gnl|CDD|129668 TIGR00578, ku70, ATP-dependent DNA helicase II, 70 kDa subunit
          (ku70).  Proteins in this family are involved in
          non-homologous end joining, a process used for the
          repair of double stranded DNA breaks. This family is
          based on the phylogenomic analysis of JA Eisen (1999,
          Ph.D. Thesis, Stanford University). Cutoff does not
          detect the putative ku70 homologs in yeast [DNA
          metabolism, DNA replication, recombination, and
          repair].
          Length = 584

 Score = 30.2 bits (68), Expect = 0.45
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 4/43 (9%)

Query: 1  MMFCEASYLYYISKII----DLLDTIFFVLRKKNSHITFLHVY 39
           M  +     Y SKII    DLL  +F+   K  + + F ++Y
Sbjct: 37 DMSIQCIQSVYTSKIISSDKDLLAVVFYGTEKDKNSVNFKNIY 79


>gnl|CDD|200554 cd10928, CE4_u4, Putative catalytic domain of uncharacterized
           bacterial proteins from the carbohydrate esterase 4
           superfamily.  This family corresponds to a group of
           uncharacterized bacterial proteins with high sequence
           similarity to the catalytic domain of the six-stranded
           barrel rhizobial NodB-like proteins, which remove
           N-linked or O-linked acetyl groups from cell wall
           polysaccharides and belong to the larger carbohydrate
           esterase 4 (CE4) superfamily.
          Length = 222

 Score = 27.7 bits (62), Expect = 2.3
 Identities = 5/16 (31%), Positives = 6/16 (37%)

Query: 40  HHAMMVLTTWAFLRYF 55
           HH +     W FL   
Sbjct: 191 HHLVHDEAAWEFLDAL 206


>gnl|CDD|236563 PRK09554, feoB, ferrous iron transport protein B; Reviewed.
          Length = 772

 Score = 27.0 bits (60), Expect = 6.0
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 7/39 (17%)

Query: 37  HVYHHAMMVLTTWAFLRYFKGEQG-------IFIGLLNS 68
           HV H   +++ TW  L+ F    G       IFIG LNS
Sbjct: 493 HVPHLKSLLIQTWQRLKGFVLRAGKVIIIVSIFIGALNS 531


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.334    0.143    0.461 

Gapped
Lambda     K      H
   0.267   0.0756    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,256,359
Number of extensions: 759115
Number of successful extensions: 1204
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1196
Number of HSP's successfully gapped: 41
Length of query: 161
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 72
Effective length of database: 6,990,096
Effective search space: 503286912
Effective search space used: 503286912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 55 (24.9 bits)