RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12386
         (161 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.2 bits (70), Expect = 0.15
 Identities = 28/162 (17%), Positives = 44/162 (27%), Gaps = 59/162 (36%)

Query: 6   ASYLYYISKIIDLLDTIFFVLRKKNSHITFLHVYHHAMMVLTTWAFLRYFKGEQGIFIGL 65
             +L Y+S +++            +    F  V +           L  F  E      L
Sbjct: 62  GKFLGYVSSLVE-----------PSKVGQFDQVLNLC---------LTEF--ENCY---L 96

Query: 66  LNSLVHVVMYSYYFLAALGPEVQKYLWWKKYITKFQLTQFALFCIHQLSLIVLSCDMPVA 125
             + +H         A L  E    L   K + K             ++          A
Sbjct: 97  EGNDIHA------LAAKLLQENDTTLVKTKELIK------NYITARIMAKRPFDKKSNSA 144

Query: 126 LTYYIFFQAVV-----MCVLFG-----NFY-------YQTYT 150
           L     F+AV      +  +FG     + Y       YQTY 
Sbjct: 145 L-----FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYH 181



 Score = 25.8 bits (56), Expect = 9.6
 Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 53  RYFKGEQGIFIGLLNSLVHVVMYSYYF-LAALGPEVQK 89
            +    + + I L+N   ++V+      L  L   ++K
Sbjct: 358 SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK 395


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.334    0.143    0.461 

Gapped
Lambda     K      H
   0.267   0.0549    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,487,436
Number of extensions: 132209
Number of successful extensions: 367
Number of sequences better than 10.0: 1
Number of HSP's gapped: 364
Number of HSP's successfully gapped: 13
Length of query: 161
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 75
Effective length of database: 4,300,587
Effective search space: 322544025
Effective search space used: 322544025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 53 (24.6 bits)