Query psy12387
Match_columns 98
No_of_seqs 109 out of 780
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 17:51:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12387.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12387hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00251 fatty acid elongase; 99.7 1E-16 2.2E-21 122.2 5.7 66 21-88 13-83 (272)
2 PF01151 ELO: GNS1/SUR4 family 99.6 1.8E-15 3.9E-20 113.3 7.1 60 28-89 1-60 (250)
3 KOG3071|consensus 99.5 3.1E-14 6.8E-19 108.9 7.9 72 20-93 17-88 (274)
4 KOG3072|consensus 99.4 2.7E-13 5.9E-18 103.8 3.8 66 22-89 28-93 (282)
5 COG5548 Small integral membran 75.0 2.4 5.2E-05 28.3 1.9 23 40-63 60-82 (105)
6 PF06210 DUF1003: Protein of u 46.3 87 0.0019 20.8 6.4 51 32-85 2-52 (108)
7 PF11694 DUF3290: Protein of u 35.0 89 0.0019 22.0 4.3 46 33-79 16-61 (149)
8 COG4420 Predicted membrane pro 28.7 2.5E+02 0.0053 20.9 6.3 50 31-83 55-104 (191)
9 PF15048 OSTbeta: Organic solu 25.9 1E+02 0.0022 21.3 3.3 25 36-61 40-64 (125)
10 PF15206 FAM209: FAM209 family 25.3 30 0.00066 24.6 0.5 30 22-53 30-59 (150)
11 PRK00753 psbL photosystem II r 23.5 1.5E+02 0.0032 16.5 3.0 22 58-79 8-29 (39)
12 PRK10556 hypothetical protein; 23.4 36 0.00077 22.9 0.6 6 93-98 92-97 (111)
13 PRK09173 F0F1 ATP synthase sub 22.7 60 0.0013 22.3 1.7 30 32-61 3-36 (159)
14 PF10777 YlaC: Inner membrane 22.4 1.2E+02 0.0026 21.8 3.1 30 19-48 19-50 (155)
15 PHA00687 hypothetical protein 22.0 37 0.00081 19.8 0.4 10 56-65 1-10 (56)
16 MTH00169 ATP8 ATP synthase F0 22.0 1.2E+02 0.0025 18.6 2.7 26 32-57 12-37 (67)
17 PF06610 DUF1144: Protein of u 21.4 1.5E+02 0.0034 20.9 3.5 33 56-89 1-35 (143)
18 PF15111 TMEM101: TMEM101 prot 20.9 2.4E+02 0.0053 21.7 4.7 70 24-96 95-171 (251)
19 PF10034 Dpy19: Q-cell neurobl 20.5 2E+02 0.0044 24.9 4.7 27 63-89 406-432 (642)
No 1
>PTZ00251 fatty acid elongase; Provisional
Probab=99.66 E-value=1e-16 Score=122.18 Aligned_cols=66 Identities=23% Similarity=0.480 Sum_probs=61.3
Q ss_pred CCcccccccccCCchHHHHHHHHHHhhhhhhhHhhhcc----CCCcc-cchhHHhHHHHHHHHHHHHHHHHHh
Q psy12387 21 TDPRTRDWFWTGSLWRPFLLMCFYYYFVKFLGPWFMKN----RQPYN-LDTVLKVYNVFQILYSAFGVYIVSP 88 (98)
Q Consensus 21 ~d~r~~~w~l~~s~~~~~~i~~~Yl~~V~~~G~~~Mk~----Rkp~~-Lk~~l~~yN~~lv~lS~~~~~~~~~ 88 (98)
..+|+++| +++||++++.++++|+++| +.||++||| |||++ ||+++.+||++|+++|++++++...
T Consensus 13 ~~~~~~~w-l~~~~~~~~~i~~~Yl~~V-~~Gp~~M~~~~~~Rkp~~~Lr~~l~~yNl~l~v~s~~~~~~~~~ 83 (272)
T PTZ00251 13 DGHAVQKW-LASNVDICVYIAAAYLTFV-FKGPQLVDAIFHGNPPVPLIKKCWALWNIGLSVFSMYGVYRVVP 83 (272)
T ss_pred CcHHHHHH-HHhCCHHHHHHHHHHHHHH-HHHHHHHhhccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999 7999999999999999999 599999975 99999 9999999999999999999998863
No 2
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=99.60 E-value=1.8e-15 Score=113.26 Aligned_cols=60 Identities=47% Similarity=1.042 Sum_probs=57.1
Q ss_pred ccccCCchHHHHHHHHHHhhhhhhhHhhhccCCCcccchhHHhHHHHHHHHHHHHHHHHHhh
Q psy12387 28 WFWTGSLWRPFLLMCFYYYFVKFLGPWFMKNRQPYNLDTVLKVYNVFQILYSAFGVYIVSPG 89 (98)
Q Consensus 28 w~l~~s~~~~~~i~~~Yl~~V~~~G~~~Mk~Rkp~~Lk~~l~~yN~~lv~lS~~~~~~~~~~ 89 (98)
|+ ++||++++.++++|+++| +.||++||||||++||+++.+||++|+++|++++++++..
T Consensus 1 Wl-~~~~~~~~~~~~~Yl~~V-~~g~~~m~~Rkp~~Lk~~~~~~N~~l~~~S~~~~~~~~~~ 60 (250)
T PF01151_consen 1 WL-MSNPWFPILIVVLYLLFV-FLGPRFMKNRKPFNLKTLIIVYNLFLVVFSAYMFYGILPA 60 (250)
T ss_pred Cc-ccCCHHHHHHHHHHHHHH-HHHHHHHhhCCCcccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 74 789999999999999999 8999999999999999999999999999999999999943
No 3
>KOG3071|consensus
Probab=99.53 E-value=3.1e-14 Score=108.87 Aligned_cols=72 Identities=33% Similarity=0.364 Sum_probs=63.0
Q ss_pred CCCcccccccccCCchHHHHHHHHHHhhhhhhhHhhhccCCCcccchhHHhHHHHHHHHHHHHHHHHHhhhccC
Q psy12387 20 HTDPRTRDWFWTGSLWRPFLLMCFYYYFVKFLGPWFMKNRQPYNLDTVLKVYNVFQILYSAFGVYIVSPGIKLC 93 (98)
Q Consensus 20 ~~d~r~~~w~l~~s~~~~~~i~~~Yl~~V~~~G~~~Mk~Rkp~~Lk~~l~~yN~~lv~lS~~~~~~~~~~~~~~ 93 (98)
..|++++ ||+++|++++..++.+|+ +|...||++|+||||++||+++.+||++|+++|+.+..+.....|..
T Consensus 17 ~~~~~v~-~~~l~s~~~~~~il~~yl-~v~~~G~~~m~nrkp~~l~~~~~vyN~~~vl~s~~i~~~~~~~~~~~ 88 (274)
T KOG3071|consen 17 SPDDRVR-SPLLSSPWPLLSILLAYL-FVLKLGPKLMRNRKPLKLRGLSQVYNLGQVLLSAAIFLEGELWRWLK 88 (274)
T ss_pred CCCcccc-chhccCcHHHHHHHHHHH-HHHHhcHhhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4577766 888999999999999999 66689999999999999999999999999999999777666655543
No 4
>KOG3072|consensus
Probab=99.38 E-value=2.7e-13 Score=103.85 Aligned_cols=66 Identities=24% Similarity=0.420 Sum_probs=60.6
Q ss_pred CcccccccccCCchHHHHHHHHHHhhhhhhhHhhhccCCCcccchhHHhHHHHHHHHHHHHHHHHHhh
Q psy12387 22 DPRTRDWFWTGSLWRPFLLMCFYYYFVKFLGPWFMKNRQPYNLDTVLKVYNVFQILYSAFGVYIVSPG 89 (98)
Q Consensus 22 d~r~~~w~l~~s~~~~~~i~~~Yl~~V~~~G~~~Mk~Rkp~~Lk~~l~~yN~~lv~lS~~~~~~~~~~ 89 (98)
++++..|+ .+++...+-++++|+++| +.|+++|+|||||+|++++.+||.+++++|+.++.++...
T Consensus 28 ~~~~~~~~-~~~~~~si~is~~Y~v~i-f~~q~fM~~RkpF~L~~pL~lWn~~La~FSi~g~lr~~~~ 93 (282)
T KOG3072|consen 28 SESVVKFF-QEHWPLSIHISIAYLVLI-FGGQNFMKNRKPFQLTKPLNLWNFCLAAFSILGALRTIPE 93 (282)
T ss_pred hHHHHHHH-HhccchhHHHHHHHHHHH-HHHHHHHhcCCCCCCcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677886 789999999999999999 8999999999999999999999999999999999887655
No 5
>COG5548 Small integral membrane protein [Function unknown]
Probab=75.04 E-value=2.4 Score=28.30 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=16.7
Q ss_pred HHHHHHhhhhhhhHhhhccCCCcc
Q psy12387 40 LMCFYYYFVKFLGPWFMKNRQPYN 63 (98)
Q Consensus 40 i~~~Yl~~V~~~G~~~Mk~Rkp~~ 63 (98)
..+.=++++ +.++|+||.|||.-
T Consensus 60 ~~~s~~Ll~-~~~~R~~~sRKpvP 82 (105)
T COG5548 60 TVVSAALLV-FFALRLVRSRKPVP 82 (105)
T ss_pred HHHHHHHHH-hcchhccccCCCcc
Confidence 334444556 78999999999964
No 6
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=46.26 E-value=87 Score=20.85 Aligned_cols=51 Identities=16% Similarity=0.204 Sum_probs=31.6
Q ss_pred CCchHHHHHHHHHHhhhhhhhHhhhccCCCcccchhHHhHHHHHHHHHHHHHHH
Q psy12387 32 GSLWRPFLLMCFYYYFVKFLGPWFMKNRQPYNLDTVLKVYNVFQILYSAFGVYI 85 (98)
Q Consensus 32 ~s~~~~~~i~~~Yl~~V~~~G~~~Mk~Rkp~~Lk~~l~~yN~~lv~lS~~~~~~ 85 (98)
+||...+..++....-+ ....+.-.+++|+--. .++-|+++++.+++.+--
T Consensus 2 GS~~Fi~~~~~~~~~Wi--~~N~~~~~~~~fDpyP-FilLnl~lS~~Aa~~ap~ 52 (108)
T PF06210_consen 2 GSWTFIIIFTVFLAVWI--LLNILAPPRPAFDPYP-FILLNLVLSLEAAYQAPL 52 (108)
T ss_pred CcHHHHHHHHHHHHHHH--HHHhhccccCCCCCcc-HHHHHHHHHHHHHHHHHH
Confidence 56666666666555554 2333333345676543 677799999988876643
No 7
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=35.02 E-value=89 Score=21.96 Aligned_cols=46 Identities=13% Similarity=0.236 Sum_probs=30.4
Q ss_pred CchHHHHHHHHHHhhhhhhhHhhhccCCCcccchhHHhHHHHHHHHH
Q psy12387 33 SLWRPFLLMCFYYYFVKFLGPWFMKNRQPYNLDTVLKVYNVFQILYS 79 (98)
Q Consensus 33 s~~~~~~i~~~Yl~~V~~~G~~~Mk~Rkp~~Lk~~l~~yN~~lv~lS 79 (98)
++...+.++++=++++ +.+-+++|||.--+-|-+.++==+++.++.
T Consensus 16 ~~~~~~~i~~ll~~l~-~~~~~Y~r~r~~tKyRDL~II~~L~ll~l~ 61 (149)
T PF11694_consen 16 DYLRYILIIILLLVLI-FFFIKYLRNRLDTKYRDLSIIALLLLLLLI 61 (149)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhcCcchhhhHHHHHHHHHHHHH
Confidence 3444445555555555 678999999999999988877444444333
No 8
>COG4420 Predicted membrane protein [Function unknown]
Probab=28.73 E-value=2.5e+02 Score=20.86 Aligned_cols=50 Identities=10% Similarity=0.103 Sum_probs=34.6
Q ss_pred cCCchHHHHHHHHHHhhhhhhhHhhhccCCCcccchhHHhHHHHHHHHHHHHH
Q psy12387 31 TGSLWRPFLLMCFYYYFVKFLGPWFMKNRQPYNLDTVLKVYNVFQILYSAFGV 83 (98)
Q Consensus 31 ~~s~~~~~~i~~~Yl~~V~~~G~~~Mk~Rkp~~Lk~~l~~yN~~lv~lS~~~~ 83 (98)
.+||..++..+++.++.+ ++--.-+-..||+-- +.++=|+++++.+++-+
T Consensus 55 ~Gsw~fil~~~~~ll~Wi--~lNl~~~~~~~wDpy-PFi~LnLllS~~AaiqA 104 (191)
T COG4420 55 GGSWAFILTFTLLLLLWI--VLNLFLVPGLAWDPY-PFILLNLLLSTLAAIQA 104 (191)
T ss_pred cCChHHHHHHHHHHHHHH--HHHHhhhcCCcCCCc-cHHHHHHHHHHHHHHHH
Confidence 578988888887777766 333344445777754 55666999888887755
No 9
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=25.91 E-value=1e+02 Score=21.34 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhhhhhhhHhhhccCCC
Q psy12387 36 RPFLLMCFYYYFVKFLGPWFMKNRQP 61 (98)
Q Consensus 36 ~~~~i~~~Yl~~V~~~G~~~Mk~Rkp 61 (98)
..++++++-+-++ ..|..+|+||+.
T Consensus 40 L~Ls~vvlvi~~~-LLgrsi~ANRnr 64 (125)
T PF15048_consen 40 LALSFVVLVISFF-LLGRSIQANRNR 64 (125)
T ss_pred HHHHHHHHHHHHH-HHHHHhHhcccc
Confidence 3334444444444 689999999866
No 10
>PF15206 FAM209: FAM209 family
Probab=25.29 E-value=30 Score=24.59 Aligned_cols=30 Identities=13% Similarity=0.427 Sum_probs=21.6
Q ss_pred CcccccccccCCchHHHHHHHHHHhhhhhhhH
Q psy12387 22 DPRTRDWFWTGSLWRPFLLMCFYYYFVKFLGP 53 (98)
Q Consensus 22 d~r~~~w~l~~s~~~~~~i~~~Yl~~V~~~G~ 53 (98)
.+.+++|. -+.|...+.++++|+++= +-|-
T Consensus 30 pehaqgWL-gsKwlWL~Fvv~lyvilK-f~g~ 59 (150)
T PF15206_consen 30 PEHAQGWL-GSKWLWLLFVVVLYVILK-FRGD 59 (150)
T ss_pred hhhhcchh-hhHHHHHHHHHHHHheeE-eccC
Confidence 56788995 667778888888888764 5443
No 11
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=23.49 E-value=1.5e+02 Score=16.49 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=17.5
Q ss_pred cCCCcccchhHHhHHHHHHHHH
Q psy12387 58 NRQPYNLDTVLKVYNVFQILYS 79 (98)
Q Consensus 58 ~Rkp~~Lk~~l~~yN~~lv~lS 79 (98)
|++|.+|.+....|-+.++..-
T Consensus 8 N~q~VELNRTSLy~GlLlifvl 29 (39)
T PRK00753 8 NKQPVELNRTSLYLGLLLVFVL 29 (39)
T ss_pred CCCCceechhhHHHHHHHHHHH
Confidence 5788999999999888776543
No 12
>PRK10556 hypothetical protein; Provisional
Probab=23.35 E-value=36 Score=22.94 Aligned_cols=6 Identities=67% Similarity=1.060 Sum_probs=4.4
Q ss_pred CCCCCC
Q psy12387 93 CPHGTS 98 (98)
Q Consensus 93 ~~~g~~ 98 (98)
||||+|
T Consensus 92 IpHGFs 97 (111)
T PRK10556 92 IPHGFS 97 (111)
T ss_pred CCcCcc
Confidence 778875
No 13
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=22.74 E-value=60 Score=22.30 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=18.1
Q ss_pred CCchHHHHHHHHHHhhhhhhhHh----hhccCCC
Q psy12387 32 GSLWRPFLLMCFYYYFVKFLGPW----FMKNRQP 61 (98)
Q Consensus 32 ~s~~~~~~i~~~Yl~~V~~~G~~----~Mk~Rkp 61 (98)
...|..+.++++++++.++.+|+ +|.+|+-
T Consensus 3 ~~~w~~i~f~i~l~~l~~~~~~~pi~~~l~~R~~ 36 (159)
T PRK09173 3 ATFWAFVGLVLFLALVVYLKVPGMIARSLDARAD 36 (159)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34566777777777776443543 4666643
No 14
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=22.40 E-value=1.2e+02 Score=21.81 Aligned_cols=30 Identities=10% Similarity=0.177 Sum_probs=22.9
Q ss_pred cCCCccc--ccccccCCchHHHHHHHHHHhhh
Q psy12387 19 DHTDPRT--RDWFWTGSLWRPFLLMCFYYYFV 48 (98)
Q Consensus 19 ~~~d~r~--~~w~l~~s~~~~~~i~~~Yl~~V 48 (98)
|.+|-|. ..-++.++|...++..++|+...
T Consensus 19 E~RDnkprFs~~Fi~~HP~L~~~M~~~y~~~~ 50 (155)
T PF10777_consen 19 EKRDNKPRFSSSFIRNHPYLCLAMYAAYLAVA 50 (155)
T ss_pred hccCCCccccHHHHHhCcHHHHHHHHHHHHHH
Confidence 6677444 44456899999999999998776
No 15
>PHA00687 hypothetical protein
Probab=22.04 E-value=37 Score=19.81 Aligned_cols=10 Identities=60% Similarity=0.820 Sum_probs=7.8
Q ss_pred hccCCCcccc
Q psy12387 56 MKNRQPYNLD 65 (98)
Q Consensus 56 Mk~Rkp~~Lk 65 (98)
||||+|.+-.
T Consensus 1 mknrqpvqtt 10 (56)
T PHA00687 1 MKNRQPVQTT 10 (56)
T ss_pred CCCcCccccc
Confidence 7899998743
No 16
>MTH00169 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=21.99 E-value=1.2e+02 Score=18.58 Aligned_cols=26 Identities=15% Similarity=0.522 Sum_probs=20.1
Q ss_pred CCchHHHHHHHHHHhhhhhhhHhhhc
Q psy12387 32 GSLWRPFLLMCFYYYFVKFLGPWFMK 57 (98)
Q Consensus 32 ~s~~~~~~i~~~Yl~~V~~~G~~~Mk 57 (98)
+-.|..+...+.|.+++++..|++.+
T Consensus 12 Q~~Wl~i~f~~ly~l~s~~iLPri~~ 37 (67)
T MTH00169 12 QYIWTLIILFFLFSLLVNYILPKIQQ 37 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788888898888788898755
No 17
>PF06610 DUF1144: Protein of unknown function (DUF1144); InterPro: IPR010574 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.35 E-value=1.5e+02 Score=20.92 Aligned_cols=33 Identities=12% Similarity=0.112 Sum_probs=22.7
Q ss_pred hccCCCcccchhHHhHHHHHHHHHHH--HHHHHHhh
Q psy12387 56 MKNRQPYNLDTVLKVYNVFQILYSAF--GVYIVSPG 89 (98)
Q Consensus 56 Mk~Rkp~~Lk~~l~~yN~~lv~lS~~--~~~~~~~~ 89 (98)
|+.+.|+.+| ...+=++.++++|.. |+.|.+..
T Consensus 1 m~~~~~~r~R-~a~ADTfAmVvf~~v~gm~iEifis 35 (143)
T PF06610_consen 1 MKHSAPSRLR-SAAADTFAMVVFCFVTGMLIEIFIS 35 (143)
T ss_pred CCCCCcchHH-HHHHhHHHHHHHHHHHHHHHHHHHc
Confidence 6777888887 445677888888864 55555544
No 18
>PF15111 TMEM101: TMEM101 protein family
Probab=20.90 E-value=2.4e+02 Score=21.73 Aligned_cols=70 Identities=17% Similarity=0.236 Sum_probs=35.7
Q ss_pred ccccccccCCchHHHHHHHHHHhhhhhhhHhhhccCCCcccchhHHhHHHHHHHHHHHHHHHHHhh-----hcc--CCCC
Q psy12387 24 RTRDWFWTGSLWRPFLLMCFYYYFVKFLGPWFMKNRQPYNLDTVLKVYNVFQILYSAFGVYIVSPG-----IKL--CPHG 96 (98)
Q Consensus 24 r~~~w~l~~s~~~~~~i~~~Yl~~V~~~G~~~Mk~Rkp~~Lk~~l~~yN~~lv~lS~~~~~~~~~~-----~~~--~~~g 96 (98)
+-.+|.-..=..-.++++..|+.+- .|-.=+..+|| +.|.....=-.++.+..++.+|..... |++ ||||
T Consensus 95 ~Y~~WLkvR~~sR~laiIGgyL~la--sG~ge~~r~kp-r~~~l~~tgq~~lgiyli~~Ay~L~~S~Edr~A~l~hipgg 171 (251)
T PF15111_consen 95 HYSEWLKVRMYSRSLAIIGGYLRLA--SGAGESYRQKP-RSRSLQSTGQVFLGIYLICVAYSLQHSKEDRLAYLNHIPGG 171 (251)
T ss_pred chhhHHHHHHHHHHHHHHHhHhhcc--cccchhcccCc-chhhhhhhhHHHHHHHHHHHHHHHHcCHHHHHHHHhhCCCC
Confidence 3356765554566788889998665 34433333355 444443332233333333444443322 344 6776
No 19
>PF10034 Dpy19: Q-cell neuroblast polarisation; InterPro: IPR018732 This entry represents the Dpy-19 protein from Caenorhabditis elegans and its homologues in other Metazoa, including mammals. In C. elegans, Dpy-19 is required to orient neuroblasts QL and QR correctly on the anterior/posterior (A/P) axis. These neuroblasts are born in the same A/P position, but polarise and migrate left/right asymmetrically, where QL migrates toward the posterior and QR migrates toward the anterior. After their migrations, QL (but not QR) switches on the Hox gene mab-5. Dpy-19 is required along with Unc-40 to express Mab-5 correctly in the Q cell descendants []. A mammalian dpy-19 homologue was found to be expressed in GABAergic neurons []. The mammalian homologue of Mab-5 is the Gsh2 homeobox transcription factor, which plays a crucial role in the development of GABAergic neurons. ; GO: 0016021 integral to membrane
Probab=20.54 E-value=2e+02 Score=24.87 Aligned_cols=27 Identities=15% Similarity=0.048 Sum_probs=20.3
Q ss_pred ccchhHHhHHHHHHHHHHHHHHHHHhh
Q psy12387 63 NLDTVLKVYNVFQILYSAFGVYIVSPG 89 (98)
Q Consensus 63 ~Lk~~l~~yN~~lv~lS~~~~~~~~~~ 89 (98)
+..++-.+||++|+++-+.++.-+.+.
T Consensus 406 ~~~~~e~~Y~~lQ~i~F~~LA~~imRL 432 (642)
T PF10034_consen 406 IGERPELVYHVLQTIAFGLLALLIMRL 432 (642)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 455668999999999888777655444
Done!