Query psy12387
Match_columns 98
No_of_seqs 109 out of 780
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 17:51:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12387.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12387hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kdg_A DNA mismatch repair pro 16.5 39 0.0013 23.1 0.6 6 91-96 172-177 (197)
2 3arc_L Photosystem II reaction 16.4 1.4E+02 0.0047 15.6 3.6 22 58-79 6-27 (37)
3 3ncv_A DNA mismatch repair pro 10.9 71 0.0024 22.4 0.6 7 90-96 194-200 (220)
4 3e1k_B Lactose regulatory prot 10.8 81 0.0028 14.6 0.6 12 6-17 8-19 (22)
5 4b0f_A C4B-binding protein alp 9.0 1.4E+02 0.0049 17.5 1.4 28 50-77 18-46 (65)
6 3he4_A Synzip6; heterodimeric 8.1 2.3E+02 0.008 15.6 2.0 21 56-76 8-28 (56)
7 3c19_A Uncharacterized protein 7.0 30 0.001 24.4 -2.7 16 50-65 44-60 (186)
8 2f8e_A VPG protein; RNA-depend 6.7 1.3E+02 0.0044 14.4 0.4 11 56-66 7-17 (26)
9 3bts_E Regulatory protein GAL4 6.6 1.6E+02 0.0054 14.1 0.6 12 6-17 6-17 (26)
10 2ko4_B General control protein 6.3 1.9E+02 0.0065 14.8 0.9 14 15-28 7-20 (34)
No 1
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=16.54 E-value=39 Score=23.14 Aligned_cols=6 Identities=67% Similarity=1.503 Sum_probs=5.5
Q ss_pred ccCCCC
Q psy12387 91 KLCPHG 96 (98)
Q Consensus 91 ~~~~~g 96 (98)
|.||||
T Consensus 172 ~~CpHG 177 (197)
T 3kdg_A 172 FTCPHG 177 (197)
T ss_dssp TBCTTS
T ss_pred CcCCCC
Confidence 889999
No 2
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=16.38 E-value=1.4e+02 Score=15.62 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=17.7
Q ss_pred cCCCcccchhHHhHHHHHHHHH
Q psy12387 58 NRQPYNLDTVLKVYNVFQILYS 79 (98)
Q Consensus 58 ~Rkp~~Lk~~l~~yN~~lv~lS 79 (98)
|++|.+|.+....|-+.++..-
T Consensus 6 n~q~VELNRTSLy~GLLlifvl 27 (37)
T 3arc_L 6 NRQPVELNRTSLYLGLLLILVL 27 (37)
T ss_dssp TCCCBCCCHHHHHHHHHHHHHH
T ss_pred CCCcceechhhHHHHHHHHHHH
Confidence 5789999999999988876543
No 3
>3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase; HET: DNA; 2.40A {Neisseria gonorrhoeae}
Probab=10.85 E-value=71 Score=22.44 Aligned_cols=7 Identities=43% Similarity=0.980 Sum_probs=5.9
Q ss_pred hccCCCC
Q psy12387 90 IKLCPHG 96 (98)
Q Consensus 90 ~~~~~~g 96 (98)
-|.||||
T Consensus 194 P~~CPHG 200 (220)
T 3ncv_A 194 SNQCNHG 200 (220)
T ss_dssp TTBCTTS
T ss_pred CCcCCCC
Confidence 4889999
No 4
>3e1k_B Lactose regulatory protein LAC9; transctiption, repressor, trans-activation, carbohydrate metabolism, DNA-binding, galactose metabolism; 3.00A {Kluyveromyces lactis}
Probab=10.81 E-value=81 Score=14.62 Aligned_cols=12 Identities=25% Similarity=0.600 Sum_probs=8.9
Q ss_pred hhHhhhhhhhhc
Q psy12387 6 TGVVNITNYLIE 17 (98)
Q Consensus 6 ~~~~~~y~~~~~ 17 (98)
+.+.+-|+|+|+
T Consensus 8 ttmddvynylfd 19 (22)
T 3e1k_B 8 TTMDDVYNYIFD 19 (26)
T ss_pred ccHHHHHHHhcc
Confidence 346677899987
No 5
>4b0f_A C4B-binding protein alpha chain; complement system, immune system; 2.80A {Homo sapiens}
Probab=9.04 E-value=1.4e+02 Score=17.52 Aligned_cols=28 Identities=21% Similarity=0.396 Sum_probs=22.5
Q ss_pred hhhHhhhccC-CCcccchhHHhHHHHHHH
Q psy12387 50 FLGPWFMKNR-QPYNLDTVLKVYNVFQIL 77 (98)
Q Consensus 50 ~~G~~~Mk~R-kp~~Lk~~l~~yN~~lv~ 77 (98)
..|.++|+-- .|.+-|..+-+|-+.+=+
T Consensus 18 ~~G~klmqCLp~p~dVk~ALEvYKlsLEI 46 (65)
T 4b0f_A 18 LTGKRLMQCLPNPEDVKMALEVYKLSLEI 46 (65)
T ss_dssp HHHHHHTTSSSSHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhcCCCHHHHhHHhheeechhhH
Confidence 5799999964 688999999999876543
No 6
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=8.12 E-value=2.3e+02 Score=15.61 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=15.0
Q ss_pred hccCCCcccchhHHhHHHHHH
Q psy12387 56 MKNRQPYNLDTVLKVYNVFQI 76 (98)
Q Consensus 56 Mk~Rkp~~Lk~~l~~yN~~lv 76 (98)
.|||-+|+||.--.+-|+.--
T Consensus 8 lknrvayklkenaklenivar 28 (56)
T 3he4_A 8 LKNRVAYKLKENAKLENIVAR 28 (56)
T ss_dssp ---CCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcchHHHHHHH
Confidence 689999999998888887643
No 7
>3c19_A Uncharacterized protein MK0293; protein structure initiative, PSI-2, NEW YORK SGX research center for structu genomics, nysgxrc; 2.50A {Methanopyrus kandleri AV19}
Probab=6.98 E-value=30 Score=24.39 Aligned_cols=16 Identities=31% Similarity=0.170 Sum_probs=11.0
Q ss_pred hhhHhhhc-cCCCcccc
Q psy12387 50 FLGPWFMK-NRQPYNLD 65 (98)
Q Consensus 50 ~~G~~~Mk-~Rkp~~Lk 65 (98)
+..|-+|| |||++.|+
T Consensus 44 ~~tPi~MKKnRPg~~L~ 60 (186)
T 3c19_A 44 HAVPCVTKKNRPGHVLV 60 (186)
T ss_dssp EEEEEEETTTEEEEEEE
T ss_pred EeeeceEeCCCceEEEE
Confidence 45677887 57777664
No 8
>2f8e_A VPG protein; RNA-dependent RNA polymerase , protein primer, transferase; HET: U5P; 2.90A {Foot-and-mouth disease virus - type C} PDB: 2d7s_B
Probab=6.71 E-value=1.3e+02 Score=14.44 Aligned_cols=11 Identities=9% Similarity=0.564 Sum_probs=7.4
Q ss_pred hccCCCcccch
Q psy12387 56 MKNRQPYNLDT 66 (98)
Q Consensus 56 Mk~Rkp~~Lk~ 66 (98)
|+..+|.++|.
T Consensus 7 lerq~plkvka 17 (26)
T 2f8e_A 7 LERQRPLKVKA 17 (26)
T ss_pred hhhcCcceeee
Confidence 66677877653
No 9
>3bts_E Regulatory protein GAL4; eukaryotic transcription complex, NAD, rossmann fold, acetylation, carbohydrate metabolism, DNA-binding; HET: NAD; 2.70A {Saccharomyces cerevisiae}
Probab=6.59 E-value=1.6e+02 Score=14.13 Aligned_cols=12 Identities=33% Similarity=0.634 Sum_probs=0.0
Q ss_pred hhHhhhhhhhhc
Q psy12387 6 TGVVNITNYLIE 17 (98)
Q Consensus 6 ~~~~~~y~~~~~ 17 (98)
+.+.+.|+|+|+
T Consensus 6 TTMDDvyNylFd 17 (26)
T 3bts_E 6 TTMDDVYNYLFD 17 (26)
T ss_pred ccHHHHHHHhcC
No 10
>2ko4_B General control protein GCN4; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_B
Probab=6.28 E-value=1.9e+02 Score=14.79 Aligned_cols=14 Identities=14% Similarity=0.750 Sum_probs=0.0
Q ss_pred hhcccCCCcccccc
Q psy12387 15 LIETDHTDPRTRDW 28 (98)
Q Consensus 15 ~~~~~~~d~r~~~w 28 (98)
+||+|..+...++|
T Consensus 7 ~Fe~d~~~~~~~~W 20 (34)
T 2ko4_B 7 MFEYENLEDNSKEW 20 (34)
T ss_dssp SCSSCCCCCSSGGG
T ss_pred ceeeccCCCCcchh
Done!