Query psy12387
Match_columns 98
No_of_seqs 109 out of 780
Neff 6.1
Searched_HMMs 13730
Date Fri Aug 16 17:51:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12387.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12387hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 25.6 38 0.0027 16.5 3.6 21 58-78 6-26 (37)
2 d2glia2 g.37.1.1 (A:135-167) F 7.8 89 0.0065 14.7 1.4 15 57-71 12-26 (33)
3 d1gsaa1 c.30.1.3 (A:1-122) Pro 7.0 66 0.0048 18.9 0.8 16 55-70 84-99 (122)
4 d2odgc1 a.140.1.1 (C:2-47) Inn 6.7 67 0.0049 16.3 0.6 6 91-96 18-23 (46)
5 d1ikpa3 f.1.5.1 (A:252-394) Ex 4.7 2E+02 0.015 17.4 2.1 33 53-85 19-51 (143)
6 d1oywa1 a.4.5.43 (A:407-516) D 4.5 1.2E+02 0.009 17.0 0.9 16 51-66 91-106 (110)
7 d1rlma_ c.108.1.10 (A:) Sugar 4.4 1.5E+02 0.011 18.0 1.4 14 50-63 256-269 (269)
8 d3cx5e1 b.33.1.1 (E:87-215) IS 4.0 90 0.0066 18.7 -0.0 7 90-96 89-96 (129)
9 d1riea_ b.33.1.1 (A:) ISP subu 4.0 91 0.0066 18.7 -0.0 7 90-96 86-93 (127)
10 d1dlya_ a.1.1.1 (A:) Protozoan 4.0 3.4E+02 0.025 14.5 4.1 55 2-60 9-63 (121)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=25.55 E-value=38 Score=16.48 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=17.2
Q ss_pred cCCCcccchhHHhHHHHHHHH
Q psy12387 58 NRQPYNLDTVLKVYNVFQILY 78 (98)
Q Consensus 58 ~Rkp~~Lk~~l~~yN~~lv~l 78 (98)
|++|.+|.+....|-+.++..
T Consensus 6 n~q~veLNrtsLy~GlLlifv 26 (37)
T d2axtl1 6 NRQPVELNRTSLYLGLLLILV 26 (37)
T ss_dssp SCCCBCCCHHHHHHHHHHHHH
T ss_pred CCCccccchhhHHHHHHHHHH
Confidence 678999999999998876543
No 2
>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.77 E-value=89 Score=14.71 Aligned_cols=15 Identities=20% Similarity=0.430 Sum_probs=9.4
Q ss_pred ccCCCcccchhHHhH
Q psy12387 57 KNRQPYNLDTVLKVY 71 (98)
Q Consensus 57 k~Rkp~~Lk~~l~~y 71 (98)
++.+||+-+.-++.|
T Consensus 12 R~~~pf~a~YkLv~H 26 (33)
T d2glia2 12 RELRPFKAQYMLVVH 26 (33)
T ss_dssp TTTCCCSSHHHHHHH
T ss_pred CCCCcchhHHHHHHH
Confidence 344677777666654
No 3
>d1gsaa1 c.30.1.3 (A:1-122) Prokaryotic glutathione synthetase, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=6.97 E-value=66 Score=18.91 Aligned_cols=16 Identities=13% Similarity=0.544 Sum_probs=12.5
Q ss_pred hhccCCCcccchhHHh
Q psy12387 55 FMKNRQPYNLDTVLKV 70 (98)
Q Consensus 55 ~Mk~Rkp~~Lk~~l~~ 70 (98)
+||.-|||+.+.+-..
T Consensus 84 ~mRkDPPfd~~Yl~~T 99 (122)
T d1gsaa1 84 LMRKDPPFDTEFIYAT 99 (122)
T ss_dssp EECCCCCCCHHHHHHH
T ss_pred EEecCCCCcHHHHHHH
Confidence 6999999998865443
No 4
>d2odgc1 a.140.1.1 (C:2-47) Inner nuclear membrane protein emerin {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.67 E-value=67 Score=16.34 Aligned_cols=6 Identities=50% Similarity=0.778 Sum_probs=4.1
Q ss_pred ccCCCC
Q psy12387 91 KLCPHG 96 (98)
Q Consensus 91 ~~~~~g 96 (98)
|=||||
T Consensus 18 y~I~HG 23 (46)
T d2odgc1 18 YNIPHG 23 (46)
T ss_dssp TTCCCC
T ss_pred hCCCCC
Confidence 447888
No 5
>d1ikpa3 f.1.5.1 (A:252-394) Exotoxin A, middle domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=4.65 E-value=2e+02 Score=17.37 Aligned_cols=33 Identities=18% Similarity=0.144 Sum_probs=24.6
Q ss_pred HhhhccCCCcccchhHHhHHHHHHHHHHHHHHH
Q psy12387 53 PWFMKNRQPYNLDTVLKVYNVFQILYSAFGVYI 85 (98)
Q Consensus 53 ~~~Mk~Rkp~~Lk~~l~~yN~~lv~lS~~~~~~ 85 (98)
..+-+.|||=++......=--.|-+.|+|.+-+
T Consensus 19 ET~~R~R~PR~~~~~~~C~Y~~Q~iVsL~~A~R 51 (143)
T d1ikpa3 19 ETFTRHRQPRGAEQLEQCGYPVQRLVALYLAAR 51 (143)
T ss_dssp GGGGCSSCCCSCHHHHHTHHHHHHHHHHHHHTT
T ss_pred HHHhhccCCCCchhhHhcccHHHHHHHHHHHHH
Confidence 356788999888877777666777778776644
No 6
>d1oywa1 a.4.5.43 (A:407-516) DNA helicase RecQ DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=4.47 E-value=1.2e+02 Score=17.04 Aligned_cols=16 Identities=6% Similarity=0.102 Sum_probs=12.3
Q ss_pred hhHhhhccCCCcccch
Q psy12387 51 LGPWFMKNRQPYNLDT 66 (98)
Q Consensus 51 ~G~~~Mk~Rkp~~Lk~ 66 (98)
-|.+++++++++.|+.
T Consensus 91 ~g~~~l~g~~~v~l~~ 106 (110)
T d1oywa1 91 AARPVLRGESSLQLAV 106 (110)
T ss_dssp GGHHHHHTSSCCEEEC
T ss_pred HHHHHhCCCceEEEec
Confidence 4667899998888764
No 7
>d1rlma_ c.108.1.10 (A:) Sugar phosphatase SupH (YbiV) {Escherichia coli [TaxId: 562]}
Probab=4.40 E-value=1.5e+02 Score=18.01 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=9.2
Q ss_pred hhhHhhhccCCCcc
Q psy12387 50 FLGPWFMKNRQPYN 63 (98)
Q Consensus 50 ~~G~~~Mk~Rkp~~ 63 (98)
....++.++|.||+
T Consensus 256 ~~i~~~l~~~~~~~ 269 (269)
T d1rlma_ 256 NVIQAVLDNTYPFN 269 (269)
T ss_dssp HHHHHHHHTCTTCC
T ss_pred HHHHHHHhcCCCCC
Confidence 34567777777764
No 8
>d3cx5e1 b.33.1.1 (E:87-215) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.05 E-value=90 Score=18.69 Aligned_cols=7 Identities=57% Similarity=1.222 Sum_probs=0.0
Q ss_pred hccCC-CC
Q psy12387 90 IKLCP-HG 96 (98)
Q Consensus 90 ~~~~~-~g 96 (98)
+|.|| ||
T Consensus 89 ~~~CPCHg 96 (129)
T d3cx5e1 89 GWFCPCHG 96 (129)
T ss_dssp EEEETTTT
T ss_pred eEEEcCcC
No 9
>d1riea_ b.33.1.1 (A:) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.03 E-value=91 Score=18.71 Aligned_cols=7 Identities=57% Similarity=1.194 Sum_probs=0.0
Q ss_pred hccCC-CC
Q psy12387 90 IKLCP-HG 96 (98)
Q Consensus 90 ~~~~~-~g 96 (98)
+|.|| ||
T Consensus 86 ~f~CPCHg 93 (127)
T d1riea_ 86 GYYCPCHG 93 (127)
T ss_dssp EEEETTTT
T ss_pred eEEecCcC
No 10
>d1dlya_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Green alga (Chlamydomonas eugametos) [TaxId: 3054]}
Probab=3.95 E-value=3.4e+02 Score=14.48 Aligned_cols=55 Identities=13% Similarity=0.127 Sum_probs=0.0
Q ss_pred hhhhhhHhhhhhhhhcccCCCcccccccccCCchHHHHHHHHHHhhhhhhhHhhhccCC
Q psy12387 2 AQVITGVVNITNYLIETDHTDPRTRDWFWTGSLWRPFLLMCFYYYFVKFLGPWFMKNRQ 60 (98)
Q Consensus 2 ~~~~~~~~~~y~~~~~~~~~d~r~~~w~l~~s~~~~~~i~~~Yl~~V~~~G~~~Mk~Rk 60 (98)
++.++.+.+.+.-... .||+...++--.+....---...|+..+ +.||..-+.+.
T Consensus 9 ~~~i~~lv~~FY~~i~---~d~~l~~~F~~~d~~~~~~~~~~f~~~~-~GGp~~Y~~~~ 63 (121)
T d1dlya_ 9 REAVEAAVDKFYNKIV---ADPTVSTYFSNTDMKVQRSKQFAFLAYA-LGGASEWKGKD 63 (121)
T ss_dssp HHHHHHHHHHHHHHHH---TCTTTGGGGTTSCHHHHHHHHHHHHHHH-TTSSSCCCSCC
T ss_pred HHHHHHHHHHHHHHHH---cCHHHHHhCCCCCHHHHHHHHHHHHHHH-hCCCcccccch
Done!