RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12387
         (98 letters)



>d2joea1 d.371.1.1 (A:2-131) Hypothetical lipoprotein YehR
          {Escherichia coli [TaxId: 562]}
          Length = 130

 Score = 25.1 bits (55), Expect = 1.2
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 62 YNLDTVLKVYNVFQILYSAFGV 83
          Y  D VLK  +  +I +++ G 
Sbjct: 24 YKGDKVLKQSSETKIQFASIGA 45


>d1s04a_ b.122.1.6 (A:) Hypothetical protein PF0455 {Pyrococcus
          furiosus [TaxId: 2261]}
          Length = 110

 Score = 24.6 bits (54), Expect = 1.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 66 TVLKVYNVFQILYSAFGVYIVSPGIK 91
            ++VYN F+ +    G+  V PG+K
Sbjct: 52 KAIRVYNSFREMLEKEGLENVLPGVK 77


>d1xnea_ b.122.1.6 (A:) Hypothetical protein PF0470 {Pyrococcus
          furiosus [TaxId: 2261]}
          Length = 113

 Score = 24.3 bits (53), Expect = 2.4
 Identities = 5/34 (14%), Positives = 11/34 (32%), Gaps = 4/34 (11%)

Query: 62 YNLDTV----LKVYNVFQILYSAFGVYIVSPGIK 91
           +L       +K Y  F+ +     +  + P   
Sbjct: 44 NDLIPAEVVEVKKYETFRQVLREEPIDKIFPDKP 77


>d2aega1 d.303.1.1 (A:2-244) Hypothetical protein Atu5096
           {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 243

 Score = 23.7 bits (50), Expect = 4.6
 Identities = 3/54 (5%), Positives = 9/54 (16%), Gaps = 1/54 (1%)

Query: 10  NITNYLIETDHTDPRTRDWFWTGSLWRPFLLMCF-YYYFVKFLGPWFMKNRQPY 62
            +      T+        W     +    L+    +                 +
Sbjct: 89  RMEPDRGVTNVRKLNLPHWTRWFGVEHRCLVPVTSFAEPDPASKQEGGNVPNAW 142


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.145    0.504 

Gapped
Lambda     K      H
   0.267   0.0379    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 416,514
Number of extensions: 17439
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 12
Length of query: 98
Length of database: 2,407,596
Length adjustment: 60
Effective length of query: 38
Effective length of database: 1,583,796
Effective search space: 60184248
Effective search space used: 60184248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.8 bits)