BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12389
         (104 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q92538|GBF1_HUMAN Golgi-specific brefeldin A-resistance guanine nucleotide exchange
            factor 1 OS=Homo sapiens GN=GBF1 PE=1 SV=2
          Length = 1859

 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 39/62 (62%), Gaps = 9/62 (14%)

Query: 6    LLDLMHTLHIRTAQIYRWWADENP---------ETEMSSLWSQGWCPLLQGIARLCCDTR 56
            LLDLMHTLH R A IY  WA+E           E +  +LW+  WCPLLQGIA LCCD R
Sbjct: 1498 LLDLMHTLHTRAASIYSSWAEEQRHLETGGQKIEADSRTLWAHCWCPLLQGIACLCCDAR 1557

Query: 57   KE 58
            ++
Sbjct: 1558 RQ 1559


>sp|Q9R1D7|GBF1_CRIGR Golgi-specific brefeldin A-resistance guanine nucleotide exchange
            factor 1 OS=Cricetulus griseus GN=GBF1 PE=2 SV=1
          Length = 1856

 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 39/62 (62%), Gaps = 9/62 (14%)

Query: 6    LLDLMHTLHIRTAQIYRWWADENP---------ETEMSSLWSQGWCPLLQGIARLCCDTR 56
            LLDLMHTLH R A IY  WA+E           E +  +LW+  WCPLLQGIA LCCD R
Sbjct: 1498 LLDLMHTLHTRAASIYSSWAEEQRHLESGGRKIEADSRTLWAHCWCPLLQGIACLCCDAR 1557

Query: 57   KE 58
            ++
Sbjct: 1558 RQ 1559


>sp|Q8K0D5|EFGM_MOUSE Elongation factor G, mitochondrial OS=Mus musculus GN=Gfm1 PE=2
           SV=1
          Length = 751

 Score = 30.8 bits (68), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 3/70 (4%)

Query: 15  IRTAQIYRWWADENPETEMSSLWSQGWCPLLQGIARLCCDTRKEPADSDLPLSKVSAPHP 74
           +R  ++ R  AD   + E   +++   C L  GI     DT     +SDL +  +  P P
Sbjct: 393 VRVQRLVRMHADMMEDVE--EVYAGDICALF-GIDCASGDTFTNKDNSDLSMESIHVPEP 449

Query: 75  IINIVTQPQS 84
           +I+I  +P +
Sbjct: 450 VISIAMRPSN 459


>sp|Q69138|EBNA3_EBVA8 Epstein-Barr nuclear antigen 3 OS=Epstein-Barr virus (strain AG876)
           GN=EBNA3 PE=3 SV=1
          Length = 925

 Score = 30.4 bits (67), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 25/85 (29%)

Query: 1   MKFELLLDLMHTLHIR--------TAQIYRWWADENPETEMSSLWSQGWCPLLQGIAR-- 50
           M+F   L     ++I+        T  I   W DENP TE +  W+ G   LL+G A   
Sbjct: 276 MEFLGFLQRTELVYIKSFVSYALGTTSIETPWMDENPSTETAQAWNAG---LLRGRAYGQ 332

Query: 51  ------------LCCDTRKEPADSD 63
                         C+TR+E  D++
Sbjct: 333 DLLRTEGEHGEGATCETREESEDTE 357


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.134    0.436 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,408,050
Number of Sequences: 539616
Number of extensions: 1599464
Number of successful extensions: 3644
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3637
Number of HSP's gapped (non-prelim): 13
length of query: 104
length of database: 191,569,459
effective HSP length: 73
effective length of query: 31
effective length of database: 152,177,491
effective search space: 4717502221
effective search space used: 4717502221
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)