Query psy12389
Match_columns 104
No_of_seqs 58 out of 60
Neff 3.6
Searched_HMMs 46136
Date Fri Aug 16 17:53:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12389.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12389hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0928|consensus 97.6 1.8E-05 3.8E-10 75.0 1.0 51 35-86 1181-1231(1386)
2 PLN03076 ARF guanine nucleotid 96.7 0.0014 3E-08 64.0 3.7 37 36-72 1340-1376(1780)
3 PF02985 HEAT: HEAT repeat; I 85.9 0.54 1.2E-05 25.6 1.5 25 45-69 2-26 (31)
4 KOG0929|consensus 78.8 1.4 3E-05 43.4 2.2 35 33-67 1164-1198(1514)
5 PF12765 Cohesin_HEAT: HEAT re 55.7 12 0.00026 22.1 2.1 25 43-67 18-42 (42)
6 PF12755 Vac14_Fab1_bd: Vacuol 41.5 24 0.00052 24.1 2.2 34 34-69 60-93 (97)
7 PF07970 COPIIcoated_ERV: Endo 35.0 13 0.00029 28.5 0.1 14 49-62 8-21 (222)
8 PF07514 TraI_2: Putative heli 34.6 78 0.0017 26.0 4.5 41 8-54 10-52 (327)
9 KOG1848|consensus 32.9 52 0.0011 33.2 3.7 51 35-86 989-1039(1610)
10 COG4842 Uncharacterized protei 31.7 71 0.0015 21.6 3.3 61 3-65 23-83 (97)
11 PF14222 MOR2-PAG1_N: Cell mor 28.9 1.3E+02 0.0028 26.6 5.2 63 6-70 175-247 (552)
No 1
>KOG0928|consensus
Probab=97.62 E-value=1.8e-05 Score=75.02 Aligned_cols=51 Identities=20% Similarity=0.184 Sum_probs=43.7
Q ss_pred hhhhhhhhHHHHHHHhhhcCCCchhhhhhhhhccccCCcchhhhcCCCceee
Q psy12389 35 SLWSQGWCPLLQGIARLCCDTRKEPADSDLPLSKVSAPHPIINIVTQPQSYS 86 (104)
Q Consensus 35 ~lWs~~W~PLLqgiarqC~d~rReVR~~Ait~LQRsLLsPeL~~l~~~~~~s 86 (104)
..=+..|+||++++.++|+|.||+||++|+++||| ++....+-+.++.|.+
T Consensus 1181 ~~~~~~wl~l~~~~~kl~L~~r~~vRn~aL~~lqr-~~~~~~q~l~~~~~~~ 1231 (1386)
T KOG0928|consen 1181 NYRSEIWLILLQIIRKLCLLSRRGVRNAALTKLQR-IIGALDQGLAHSYWNP 1231 (1386)
T ss_pred hhhHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHH-HHHhhhcccchHHHHH
Confidence 33333999999999999999999999999999999 4777778888877765
No 2
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=96.72 E-value=0.0014 Score=63.96 Aligned_cols=37 Identities=30% Similarity=0.340 Sum_probs=34.2
Q ss_pred hhhhhhhHHHHHHHhhhcCCCchhhhhhhhhccccCC
Q psy12389 36 LWSQGWCPLLQGIARLCCDTRKEPADSDLPLSKVSAP 72 (104)
Q Consensus 36 lWs~~W~PLLqgiarqC~d~rReVR~~Ait~LQRsLL 72 (104)
.-..+|.|||.++...|.|+|.|||+.|+.+|.|+|.
T Consensus 1340 ~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~ 1376 (1780)
T PLN03076 1340 DHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLR 1376 (1780)
T ss_pred hHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 3457999999999999999999999999999999985
No 3
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=85.92 E-value=0.54 Score=25.56 Aligned_cols=25 Identities=16% Similarity=0.052 Sum_probs=19.2
Q ss_pred HHHHHhhhcCCCchhhhhhhhhccc
Q psy12389 45 LQGIARLCCDTRKEPADSDLPLSKV 69 (104)
Q Consensus 45 LqgiarqC~d~rReVR~~Ait~LQR 69 (104)
+..+-.++.|+..+||.+|+..|..
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~ 26 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGA 26 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4456678889999999999987754
No 4
>KOG0929|consensus
Probab=78.76 E-value=1.4 Score=43.43 Aligned_cols=35 Identities=26% Similarity=0.571 Sum_probs=32.9
Q ss_pred hhhhhhhhhhHHHHHHHhhhcCCCchhhhhhhhhc
Q psy12389 33 MSSLWSQGWCPLLQGIARLCCDTRKEPADSDLPLS 67 (104)
Q Consensus 33 ~~~lWs~~W~PLLqgiarqC~d~rReVR~~Ait~L 67 (104)
..+.|..+|-|++-++...|.+++.+||..|++.|
T Consensus 1164 ~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vl 1198 (1514)
T KOG0929|consen 1164 EFDVWNSGWFPMLFQLSKIINDYRLEVRKRALEVL 1198 (1514)
T ss_pred ccccceeeeehhHhhhhHHhhccHHHHHHHHHHHH
Confidence 56899999999999999999999999999999875
No 5
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=55.74 E-value=12 Score=22.06 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=22.0
Q ss_pred HHHHHHHhhhcCCCchhhhhhhhhc
Q psy12389 43 PLLQGIARLCCDTRKEPADSDLPLS 67 (104)
Q Consensus 43 PLLqgiarqC~d~rReVR~~Ait~L 67 (104)
.+...|.+-+.|+...||.+|+..+
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHC
Confidence 6788899999999999999998653
No 6
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=41.51 E-value=24 Score=24.10 Aligned_cols=34 Identities=9% Similarity=0.223 Sum_probs=27.0
Q ss_pred hhhhhhhhhHHHHHHHhhhcCCCchhhhhhhhhccc
Q psy12389 34 SSLWSQGWCPLLQGIARLCCDTRKEPADSDLPLSKV 69 (104)
Q Consensus 34 ~~lWs~~W~PLLqgiarqC~d~rReVR~~Ait~LQR 69 (104)
.++.. +..-++.++.+++.|+..+||+.| ..|-|
T Consensus 60 ~~~l~-~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 60 GEILP-YFNEIFDALCKLSADPDENVRSAA-ELLDR 93 (97)
T ss_pred HHHHH-HHHHHHHHHHHHHcCCchhHHHHH-HHHHH
Confidence 34444 778899999999999999999998 44443
No 7
>PF07970 COPIIcoated_ERV: Endoplasmic reticulum vesicle transporter ; InterPro: IPR012936 This domain occurs in many hypothetical proteins, and also two partially characterised proteins. One of these proteins, PTX1 Q96RQ1 from SWISSPROT, is a homeodomain-containing transcription factor involved in regulating all pituitary hormone genes []. This protein is down regulated in prostate carcinoma []. The other protein, ERGIC-32 Q969X5 from SWISSPROT, is involved in protein transport from the ER to the Golgi [].
Probab=34.96 E-value=13 Score=28.53 Aligned_cols=14 Identities=21% Similarity=0.660 Sum_probs=12.0
Q ss_pred HhhhcCCCchhhhh
Q psy12389 49 ARLCCDTRKEPADS 62 (104)
Q Consensus 49 arqC~d~rReVR~~ 62 (104)
...|||.|.|||.+
T Consensus 8 ~~~CCnTC~~V~~a 21 (222)
T PF07970_consen 8 EGKCCNTCEDVREA 21 (222)
T ss_pred CCCcCcCHHHHHHH
Confidence 35799999999985
No 8
>PF07514 TraI_2: Putative helicase; InterPro: IPR011119 The members of this family are restricted to the proteobacteria. Some members have been annotated as helicase, conjugative relaxase or nickase. The majority contain an HD domain, which is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria.
Probab=34.60 E-value=78 Score=26.05 Aligned_cols=41 Identities=20% Similarity=0.190 Sum_probs=29.7
Q ss_pred HHHHH--HHHhHHHHHhHHHhcCCCcchhhhhhhhhhHHHHHHHhhhcC
Q psy12389 8 DLMHT--LHIRTAQIYRWWADENPETEMSSLWSQGWCPLLQGIARLCCD 54 (104)
Q Consensus 8 DLm~t--LhtRi~~I~~~wae~~~~~~~~~lWs~~W~PLLqgiarqC~d 54 (104)
+|+.+ -+.++.+|.+ ... -+.+.|.++|+|.+..+|..|-+
T Consensus 10 ~LL~~~~~~~ll~~I~~-----~~~-l~~~~f~~~yl~~l~r~A~~vQ~ 52 (327)
T PF07514_consen 10 QLLATPRRQELLQQIWQ-----NSG-LSREQFERLYLPPLERYAEFVQL 52 (327)
T ss_pred HHHhHHHHHHHHHHHHH-----HcC-CCHHHHHHHHHHHHHHHHHHHhc
Confidence 45666 6666666666 333 24778999999999999988743
No 9
>KOG1848|consensus
Probab=32.95 E-value=52 Score=33.21 Aligned_cols=51 Identities=22% Similarity=0.099 Sum_probs=38.4
Q ss_pred hhhhhhhhHHHHHHHhhhcCCCchhhhhhhhhccccCCcchhhhcCCCceee
Q psy12389 35 SLWSQGWCPLLQGIARLCCDTRKEPADSDLPLSKVSAPHPIINIVTQPQSYS 86 (104)
Q Consensus 35 ~lWs~~W~PLLqgiarqC~d~rReVR~~Ait~LQRsLLsPeL~~l~~~~~~s 86 (104)
.+-..-|.-||..|+.+|.|-|-+||+.|.--+=|++=+ +=+.|++.-|=|
T Consensus 989 ~l~e~lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~S-hg~~l~~~aW~s 1039 (1610)
T KOG1848|consen 989 ILPEVLWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNS-HGSKLGTNAWAS 1039 (1610)
T ss_pred hhhhHHHHHHHHHHHHHhccchHHHhhhHHHHHHHHHhh-hcccCChhHHHH
Confidence 355788999999999999999999999999777665433 223555555533
No 10
>COG4842 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.72 E-value=71 Score=21.62 Aligned_cols=61 Identities=11% Similarity=0.101 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHHhHHHHHhHHHhcCCCcchhhhhhhhhhHHHHHHHhhhcCCCchhhhhhhh
Q psy12389 3 FELLLDLMHTLHIRTAQIYRWWADENPETEMSSLWSQGWCPLLQGIARLCCDTRKEPADSDLP 65 (104)
Q Consensus 3 ~~qlLDLm~tLhtRi~~I~~~wae~~~~~~~~~lWs~~W~PLLqgiarqC~d~rReVR~~Ait 65 (104)
+-++-+++..|..++..|-..|...+. ..-+-|-.-|.+=.+.+.+.=-+..+++|+.|=+
T Consensus 23 ~~~i~~~l~~l~s~~~~l~~~W~G~a~--~~f~~~~~~w~~~~~~l~~~l~~i~~~l~~~a~~ 83 (97)
T COG4842 23 SGEIQALLQDLASEIAKLQSAWEGDAA--EAFQSEQQQWNQAATELNEALEQLADALRHAADA 83 (97)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcCchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677889999999999998875544 4466777888888888887777777888887644
No 11
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=28.93 E-value=1.3e+02 Score=26.61 Aligned_cols=63 Identities=16% Similarity=0.162 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhHHHHHhHHHhcCCC---------cchhhhhhhhhhH-HHHHHHhhhcCCCchhhhhhhhhcccc
Q psy12389 6 LLDLMHTLHIRTAQIYRWWADENPE---------TEMSSLWSQGWCP-LLQGIARLCCDTRKEPADSDLPLSKVS 70 (104)
Q Consensus 6 lLDLm~tLhtRi~~I~~~wae~~~~---------~~~~~lWs~~W~P-LLqgiarqC~d~rReVR~~Ait~LQRs 70 (104)
-.+.|.+|..|+.+++.+=+.-... +...+.+.+.|.| ++..+...+-|. +.|..|+..+.|-
T Consensus 175 W~~~v~~i~~~~~~~~~K~khw~~afPL~t~lLCvS~~e~F~~~W~~~~i~~~~~klKdk--~~r~~~l~~l~RL 247 (552)
T PF14222_consen 175 WKEAVETIYPRAAKMMSKPKHWNVAFPLVTTLLCVSPKEFFLSNWLPSLIESLISKLKDK--ETRPVALECLSRL 247 (552)
T ss_pred HHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhcCCh--hhhHHHHHHHHHH
Confidence 3567888888998888730000011 5789999999998 998888777776 8898888777664
Done!