Query psy12389
Match_columns 104
No_of_seqs 58 out of 60
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 17:53:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12389.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12389hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ajj_A NS5A, nonstructural pro 41.1 17 0.0006 19.9 2.0 17 6-22 5-21 (28)
2 3gwk_C SAG1039, putative uncha 41.1 36 0.0012 20.8 3.8 62 5-68 26-87 (98)
3 2vs0_A Virulence factor ESXA; 33.2 59 0.002 19.4 3.8 63 5-69 24-86 (97)
4 2qk2_A LP04448P; mini spindles 21.3 58 0.002 22.5 2.4 34 37-70 170-203 (242)
5 4ffb_C Protein STU2; tubulin f 21.0 37 0.0013 24.3 1.4 24 44-67 184-207 (278)
6 2khf_A PLNJ; anti-microbial, b 17.7 56 0.0019 17.4 1.3 13 36-48 2-14 (26)
7 3swy_A Cyclic nucleotide-gated 16.2 1.4E+02 0.0048 17.6 3.0 25 5-29 9-33 (46)
8 1qkr_A Vinculin, tail domain; 13.7 44 0.0015 24.9 0.3 38 41-80 83-121 (188)
9 3zbh_A ESXA; unknown function, 12.0 1.3E+02 0.0046 17.8 2.2 62 5-68 27-88 (99)
10 3pmr_A Amyloid-like protein 1; 11.9 2.2E+02 0.0074 21.8 3.7 25 3-27 30-55 (219)
No 1
>2ajj_A NS5A, nonstructural protein 5A; IN-plane membrane anchor domain, amphipathic alpha-helix, membrane protein; NMR {Synthetic} PDB: 2ajm_A 2ajn_A 2ajo_A
Probab=41.14 E-value=17 Score=19.93 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhHHHHHh
Q psy12389 6 LLDLMHTLHIRTAQIYR 22 (104)
Q Consensus 6 lLDLm~tLhtRi~~I~~ 22 (104)
+|||++.||..+-.=.+
T Consensus 5 iLdLl~~lh~~~~~~ik 21 (28)
T 2ajj_A 5 VLDLIYSLHKQINRGLK 21 (28)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 69999999998765444
No 2
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=41.06 E-value=36 Score=20.84 Aligned_cols=62 Identities=13% Similarity=0.208 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhHHHHHhHHHhcCCCcchhhhhhhhhhHHHHHHHhhhcCCCchhhhhhhhhcc
Q psy12389 5 LLLDLMHTLHIRTAQIYRWWADENPETEMSSLWSQGWCPLLQGIARLCCDTRKEPADSDLPLSK 68 (104)
Q Consensus 5 qlLDLm~tLhtRi~~I~~~wae~~~~~~~~~lWs~~W~PLLqgiarqC~d~rReVR~~Ait~LQ 68 (104)
++-+.+..|...+..|-..|..+.+ ..-...|.. |.|-+..+...--+-.+.++..|=+|-+
T Consensus 26 ~i~~~l~~L~~~~~~l~~~W~G~a~-~aF~~~~~~-~~~~~~~~~~~L~~i~~~L~~~a~~~~~ 87 (98)
T 3gwk_C 26 QVTEVLNLLTQEQAVIDENWDGSTF-DSFEAQFNE-LSPKITEFAQLLEDINQQLLKVADIIEQ 87 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHBCSSTT-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccCcHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888999999999999965444 334566664 8888888888877777888887766643
No 3
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=33.19 E-value=59 Score=19.44 Aligned_cols=63 Identities=10% Similarity=0.205 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhHHHHHhHHHhcCCCcchhhhhhhhhhHHHHHHHhhhcCCCchhhhhhhhhccc
Q psy12389 5 LLLDLMHTLHIRTAQIYRWWADENPETEMSSLWSQGWCPLLQGIARLCCDTRKEPADSDLPLSKV 69 (104)
Q Consensus 5 qlLDLm~tLhtRi~~I~~~wae~~~~~~~~~lWs~~W~PLLqgiarqC~d~rReVR~~Ait~LQR 69 (104)
++-+.+..|...+..|-..|..+.+. .-...|. -|.|-+..+...--+-.+.+++.|-+|-+.
T Consensus 24 ~l~~~l~~L~~~~~~L~~~W~G~a~~-af~~~~~-~~~~~~~~~~~~L~~i~~~L~~~a~~y~~~ 86 (97)
T 2vs0_A 24 QIRQILSDLTRAQGEIAANWEGQAFS-RFEEQFQ-QLSPKVEKFAQLLEEIKQQLNSTADAVQEQ 86 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSSTTH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHhcccCcHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888999999998889655443 3444555 889988888888888888888888777543
No 4
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=21.35 E-value=58 Score=22.47 Aligned_cols=34 Identities=9% Similarity=-0.090 Sum_probs=26.9
Q ss_pred hhhhhhHHHHHHHhhhcCCCchhhhhhhhhcccc
Q psy12389 37 WSQGWCPLLQGIARLCCDTRKEPADSDLPLSKVS 70 (104)
Q Consensus 37 Ws~~W~PLLqgiarqC~d~rReVR~~Ait~LQRs 70 (104)
-..++..++..+...-.|+..+||..|+..+...
T Consensus 170 ~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l 203 (242)
T 2qk2_A 170 NKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTL 203 (242)
T ss_dssp CHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 3456667777777778899999999999888653
No 5
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=21.01 E-value=37 Score=24.32 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=19.8
Q ss_pred HHHHHHhhhcCCCchhhhhhhhhc
Q psy12389 44 LLQGIARLCCDTRKEPADSDLPLS 67 (104)
Q Consensus 44 LLqgiarqC~d~rReVR~~Ait~L 67 (104)
++..+..+..|+..+||..|+..+
T Consensus 184 i~~~l~k~l~d~~~~VR~aA~~l~ 207 (278)
T 4ffb_C 184 LLKHVPQLAGHGDRNVRSQTMNLI 207 (278)
T ss_dssp HGGGHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHH
Confidence 555677788899999999999764
No 6
>2khf_A PLNJ; anti-microbial, bacteriocin, peptide, two-peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2khg_A
Probab=17.74 E-value=56 Score=17.41 Aligned_cols=13 Identities=31% Similarity=0.877 Sum_probs=10.5
Q ss_pred hhhhhhhHHHHHH
Q psy12389 36 LWSQGWCPLLQGI 48 (104)
Q Consensus 36 lWs~~W~PLLqgi 48 (104)
+|..||.-|-.|+
T Consensus 2 awknfwsslrkgf 14 (26)
T 2khf_A 2 AWKNFWSSLRKGF 14 (26)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhc
Confidence 6999999887764
No 7
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=16.19 E-value=1.4e+02 Score=17.63 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhHHHHHhHHHhcCC
Q psy12389 5 LLLDLMHTLHIRTAQIYRWWADENP 29 (104)
Q Consensus 5 qlLDLm~tLhtRi~~I~~~wae~~~ 29 (104)
++=.-+..|++|.+.++.+....+.
T Consensus 9 ~Le~~ld~LqTr~ArLlae~~ssq~ 33 (46)
T 3swy_A 9 QLGSSLDTLQTRFARLLAEYNATQM 33 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677889999999997766544
No 8
>1qkr_A Vinculin, tail domain; actin cytoskeleton, cell adhesion, helical bundle, lipid binding; 1.8A {Gallus gallus} SCOP: a.24.9.1 PDB: 3h2u_A 3h2v_A 1rke_B 3myi_A
Probab=13.66 E-value=44 Score=24.95 Aligned_cols=38 Identities=16% Similarity=0.251 Sum_probs=31.4
Q ss_pred hhHHHHHHHhhhcCCCchhhhhhhhhccccCC-cchhhhcC
Q psy12389 41 WCPLLQGIARLCCDTRKEPADSDLPLSKVSAP-HPIINIVT 80 (104)
Q Consensus 41 W~PLLqgiarqC~d~rReVR~~Ait~LQRsLL-sPeL~~l~ 80 (104)
-..+.+.||.+|.|. ..|..-+.|++|..+ +.+|+++.
T Consensus 83 l~k~ar~iA~qc~D~--~~k~~Ll~~~~rI~t~~~QLkIls 121 (188)
T 1qkr_A 83 VTRLAKEVAKQCTDK--RIRTNLLQVCERIPTISTQLKILS 121 (188)
T ss_dssp HHHHHHHHHHHCCCH--HHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCh--HHHHHHHHHHHhhhHHHHHHHHHH
Confidence 367889999999764 689999999999877 88887763
No 9
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=12.02 E-value=1.3e+02 Score=17.83 Aligned_cols=62 Identities=13% Similarity=0.208 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhHHHHHhHHHhcCCCcchhhhhhhhhhHHHHHHHhhhcCCCchhhhhhhhhcc
Q psy12389 5 LLLDLMHTLHIRTAQIYRWWADENPETEMSSLWSQGWCPLLQGIARLCCDTRKEPADSDLPLSK 68 (104)
Q Consensus 5 qlLDLm~tLhtRi~~I~~~wae~~~~~~~~~lWs~~W~PLLqgiarqC~d~rReVR~~Ait~LQ 68 (104)
++-+.+..|...+..|-..|..+.+ ..-...|. -|.|-+..+...--+-...+++.|-+|-+
T Consensus 27 ~i~~~l~~L~~~v~~L~~~W~G~a~-~af~~~~~-~~~~~~~~~~~~L~~i~~~L~~~a~~~~~ 88 (99)
T 3zbh_A 27 NVTELIARLDQMSHTLQGIWEGASS-EAFIQQYQ-ELRPSFEKMAVLLNEVGQQLHNSATILED 88 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSHHH-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccChHH-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999888865432 23345555 47888777777777777777777766643
No 10
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo sapiens} SCOP: a.47.4.0 PDB: 3q7l_A 3q7g_A 3qmk_A*
Probab=11.89 E-value=2.2e+02 Score=21.82 Aligned_cols=25 Identities=16% Similarity=0.136 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHH-HhHHHHHhHHHhc
Q psy12389 3 FELLLDLMHTLH-IRTAQIYRWWADE 27 (104)
Q Consensus 3 ~~qlLDLm~tLh-tRi~~I~~~wae~ 27 (104)
|+++=.-|...| .|++.+|++|+|.
T Consensus 30 f~~Ak~rLe~~hr~k~~~VmkEW~ea 55 (219)
T 3pmr_A 30 FLRAKMDLEERRMRQINEVMREWAMA 55 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555566665 6899999999774
Done!