Query psy12389
Match_columns 104
No_of_seqs 58 out of 60
Neff 3.6
Searched_HMMs 13730
Date Fri Aug 16 17:54:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12389.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12389hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1te4a_ a.118.1.16 (A:) MTH187 20.8 30 0.0022 19.6 2.3 27 39-68 83-109 (111)
2 d1t95a1 a.5.8.1 (A:87-161) Hyp 10.5 49 0.0036 19.6 1.3 23 36-58 15-37 (75)
3 d1ibrb_ a.118.1.1 (B:) Importi 10.2 59 0.0043 21.2 1.7 32 39-70 403-434 (458)
4 d1bxba_ c.1.15.3 (A:) D-xylose 9.7 27 0.002 26.2 -0.3 20 52-71 103-122 (387)
5 d1agta_ g.3.7.2 (A:) Agitoxin 9.5 17 0.0012 19.8 -1.2 11 49-59 11-21 (38)
6 d1sxje2 c.37.1.20 (E:4-255) Re 9.1 43 0.0031 21.3 0.6 28 45-76 216-243 (252)
7 d1i26a_ g.3.6.3 (A:) PTU-1 {As 8.5 44 0.0032 17.4 0.4 10 50-59 17-26 (34)
8 d1oyza_ a.118.1.16 (A:) Hypoth 8.2 87 0.0063 19.2 1.9 24 45-68 52-75 (276)
9 d1muwa_ c.1.15.3 (A:) D-xylose 8.1 34 0.0025 25.7 -0.3 20 52-71 103-122 (386)
10 d1oyia_ a.4.5.19 (A:) dsRNA-bi 7.8 60 0.0043 18.9 0.8 24 48-72 24-47 (62)
No 1
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=20.84 E-value=30 Score=19.64 Aligned_cols=27 Identities=4% Similarity=-0.043 Sum_probs=18.9
Q ss_pred hhhhHHHHHHHhhhcCCCchhhhhhhhhcc
Q psy12389 39 QGWCPLLQGIARLCCDTRKEPADSDLPLSK 68 (104)
Q Consensus 39 ~~W~PLLqgiarqC~d~rReVR~~Ait~LQ 68 (104)
..-.|+|. .+.-|+..+||..|+..|+
T Consensus 83 ~~~~~~L~---~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 83 ERVRAAME---KLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp HHHHHHHH---HHTTSCCTHHHHHHHHHGG
T ss_pred cchHHHHH---HHHcCCCHHHHHHHHHHHH
Confidence 34445544 4456899999999998876
No 2
>d1t95a1 a.5.8.1 (A:87-161) Hypothetical protein AF0491, middle domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=10.53 E-value=49 Score=19.58 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=16.8
Q ss_pred hhhhhhhHHHHHHHhhhcCCCch
Q psy12389 36 LWSQGWCPLLQGIARLCCDTRKE 58 (104)
Q Consensus 36 lWs~~W~PLLqgiarqC~d~rRe 58 (104)
.=.+-+.=+..-|++.|+||+-.
T Consensus 15 ~~e~k~~~Ii~~I~~~~VnP~T~ 37 (75)
T d1t95a1 15 MLEAKRKQIINFISRNTIDPRTN 37 (75)
T ss_dssp HHHHHHHHHHHHHHHHEEBTTTT
T ss_pred HHHHHHHHHHHHHHHhccCCCCC
Confidence 33445556788899999999854
No 3
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.17 E-value=59 Score=21.19 Aligned_cols=32 Identities=9% Similarity=-0.147 Sum_probs=24.5
Q ss_pred hhhhHHHHHHHhhhcCCCchhhhhhhhhcccc
Q psy12389 39 QGWCPLLQGIARLCCDTRKEPADSDLPLSKVS 70 (104)
Q Consensus 39 ~~W~PLLqgiarqC~d~rReVR~~Ait~LQRs 70 (104)
.+.-.++..+-....|+...||.+|+..|.|.
T Consensus 403 ~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i 434 (458)
T d1ibrb_ 403 PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRI 434 (458)
T ss_dssp TTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 34445666677777899999999999888764
No 4
>d1bxba_ c.1.15.3 (A:) D-xylose isomerase {Thermus aquaticus, subsp. Thermophilus [TaxId: 271]}
Probab=9.74 E-value=27 Score=26.18 Aligned_cols=20 Identities=10% Similarity=-0.177 Sum_probs=18.4
Q ss_pred hcCCCchhhhhhhhhccccC
Q psy12389 52 CCDTRKEPADSDLPLSKVSA 71 (104)
Q Consensus 52 C~d~rReVR~~Ait~LQRsL 71 (104)
-+||-.+||..|+.++.|++
T Consensus 103 ~t~pD~~vR~~Ai~~~k~~i 122 (387)
T d1bxba_ 103 FTSPDPWVRAYALRKSLETM 122 (387)
T ss_dssp TTCSSHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHH
Confidence 47999999999999999987
No 5
>d1agta_ g.3.7.2 (A:) Agitoxin {Scorpion (Leiurus quinquestriatus hebraeus) [TaxId: 6884]}
Probab=9.45 E-value=17 Score=19.77 Aligned_cols=11 Identities=18% Similarity=0.413 Sum_probs=8.7
Q ss_pred HhhhcCCCchh
Q psy12389 49 ARLCCDTRKEP 59 (104)
Q Consensus 49 arqC~d~rReV 59 (104)
++||.+|+++-
T Consensus 11 s~qclkpckda 21 (38)
T d1agta_ 11 SPQCIKPCKDA 21 (38)
T ss_dssp GGGGHHHHHHH
T ss_pred ChhhcchhHHh
Confidence 68899888764
No 6
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.07 E-value=43 Score=21.29 Aligned_cols=28 Identities=18% Similarity=0.095 Sum_probs=19.0
Q ss_pred HHHHHhhhcCCCchhhhhhhhhccccCCcchh
Q psy12389 45 LQGIARLCCDTRKEPADSDLPLSKVSAPHPII 76 (104)
Q Consensus 45 LqgiarqC~d~rReVR~~Ait~LQRsLLsPeL 76 (104)
+..|++.| ..++|+ ||..||+..++-++
T Consensus 216 l~~i~~~s---~Gd~R~-ai~~Lq~~~~~~~~ 243 (252)
T d1sxje2 216 LKRIAQAS---NGNLRV-SLLMLESMALNNEL 243 (252)
T ss_dssp HHHHHHHH---TTCHHH-HHHHHTHHHHTTTT
T ss_pred HHHHHHHc---CCcHHH-HHHHHHHHHHcCCC
Confidence 45566655 246775 78999987776665
No 7
>d1i26a_ g.3.6.3 (A:) PTU-1 {Assassin bug (Peirates turpis) [TaxId: 181095]}
Probab=8.53 E-value=44 Score=17.42 Aligned_cols=10 Identities=30% Similarity=0.753 Sum_probs=6.8
Q ss_pred hhhcCCCchh
Q psy12389 50 RLCCDTRKEP 59 (104)
Q Consensus 50 rqC~d~rReV 59 (104)
+-|||||.=+
T Consensus 17 kpccnprawc 26 (34)
T d1i26a_ 17 KPCCNPRAWC 26 (34)
T ss_dssp CCBSSTTCCE
T ss_pred CCCcChHHHH
Confidence 4689987543
No 8
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}
Probab=8.19 E-value=87 Score=19.18 Aligned_cols=24 Identities=13% Similarity=0.109 Sum_probs=18.1
Q ss_pred HHHHHhhhcCCCchhhhhhhhhcc
Q psy12389 45 LQGIARLCCDTRKEPADSDLPLSK 68 (104)
Q Consensus 45 LqgiarqC~d~rReVR~~Ait~LQ 68 (104)
+..+.+++-|+..+||..|+..|-
T Consensus 52 ~~~l~~~l~d~~~~vr~~a~~aL~ 75 (276)
T d1oyza_ 52 VRLAIEFCSDKNYIRRDIGAFILG 75 (276)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHH
Confidence 345556777999999999888773
No 9
>d1muwa_ c.1.15.3 (A:) D-xylose isomerase {Streptomyces olivochromogenes [TaxId: 1963]}
Probab=8.11 E-value=34 Score=25.73 Aligned_cols=20 Identities=5% Similarity=-0.037 Sum_probs=18.3
Q ss_pred hcCCCchhhhhhhhhccccC
Q psy12389 52 CCDTRKEPADSDLPLSKVSA 71 (104)
Q Consensus 52 C~d~rReVR~~Ait~LQRsL 71 (104)
-+||-.+||..|+.++.|++
T Consensus 103 ~tspD~~vR~~Ai~~~k~ai 122 (386)
T d1muwa_ 103 FTANDRDVRRYALRKTIRNI 122 (386)
T ss_dssp TTCSSHHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHH
Confidence 46899999999999999987
No 10
>d1oyia_ a.4.5.19 (A:) dsRNA-binding protein E3 (E3L) {Vaccinia virus [TaxId: 10245]}
Probab=7.84 E-value=60 Score=18.87 Aligned_cols=24 Identities=21% Similarity=0.083 Sum_probs=16.6
Q ss_pred HHhhhcCCCchhhhhhhhhccccCC
Q psy12389 48 IARLCCDTRKEPADSDLPLSKVSAP 72 (104)
Q Consensus 48 iarqC~d~rReVR~~Ait~LQRsLL 72 (104)
+.||----.||| +-|+-.|||+.+
T Consensus 24 ltrqlnmekrev-nkalydlqrsam 47 (62)
T d1oyia_ 24 LTRQLNMEKREV-NKALYDLQRSAM 47 (62)
T ss_dssp HHHHSSSCHHHH-HHHHHHHHHHTS
T ss_pred HHHHHhHHHHHH-HHHHHHHHHhhh
Confidence 445554555666 568889999887
Done!