Your job contains 1 sequence.
>psy12389
MKFELLLDLMHTLHIRTAQIYRWWADENPETEMSSLWSQGWCPLLQGIARLCCDTRKEPA
DSDLPLSKVSAPHPIINIVTQPQSYSISGSLDPGAPPQDGETIV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy12389
(104 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0264560 - symbol:garz "gartenzwerg" species:7227 "... 193 2.6e-14 2
RGD|1307160 - symbol:Gbf1 "golgi brefeldin A resistant gu... 165 1.1e-11 2
UNIPROTKB|F1NGJ3 - symbol:GBF1 "Uncharacterized protein" ... 170 3.4e-11 1
UNIPROTKB|F1PB58 - symbol:GBF1 "Uncharacterized protein" ... 165 1.2e-10 1
UNIPROTKB|F1PB51 - symbol:GBF1 "Uncharacterized protein" ... 165 1.2e-10 1
UNIPROTKB|Q92538 - symbol:GBF1 "Golgi-specific brefeldin ... 165 1.2e-10 1
UNIPROTKB|E1BMC4 - symbol:GBF1 "Uncharacterized protein" ... 165 1.2e-10 1
UNIPROTKB|F1S8S9 - symbol:GBF1 "Uncharacterized protein" ... 165 1.2e-10 1
ZFIN|ZDB-GENE-081107-54 - symbol:si:dkey-183c23.1 "si:dke... 152 3.8e-10 2
UNIPROTKB|H8ESE7 - symbol:gbf-1 "Protein GBF-1, isoform b... 100 5.5e-07 2
WB|WBGene00007703 - symbol:gbf-1 species:6239 "Caenorhabd... 100 1.4e-05 2
UNIPROTKB|G5EGS5 - symbol:gbf-1 "Protein GBF-1, isoform a... 100 1.4e-05 2
>FB|FBgn0264560 [details] [associations]
symbol:garz "gartenzwerg" species:7227 "Drosophila
melanogaster" [GO:0006888 "ER to Golgi vesicle-mediated transport"
evidence=ISS] [GO:0006891 "intra-Golgi vesicle-mediated transport"
evidence=ISS] [GO:0005798 "Golgi-associated vesicle" evidence=ISS]
[GO:0005085 "guanyl-nucleotide exchange factor activity"
evidence=ISS] [GO:0006911 "phagocytosis, engulfment" evidence=IMP]
[GO:0000902 "cell morphogenesis" evidence=IMP] [GO:0007431
"salivary gland development" evidence=IDA] [GO:0002064 "epithelial
cell development" evidence=IDA] [GO:0005801 "cis-Golgi network"
evidence=IDA] [GO:0035149 "lumen formation, open tracheal system"
evidence=IDA] [GO:0032940 "secretion by cell" evidence=IDA]
[GO:0000137 "Golgi cis cisterna" evidence=IDA] [GO:0007030 "Golgi
organization" evidence=IMP] [GO:0009306 "protein secretion"
evidence=IMP] [GO:0032312 "regulation of ARF GTPase activity"
evidence=IGI] [GO:0005086 "ARF guanyl-nucleotide exchange factor
activity" evidence=IGI;IBA] [GO:0035158 "regulation of tube
diameter, open tracheal system" evidence=IMP] [GO:0005802
"trans-Golgi network" evidence=IBA] InterPro:IPR000904 Pfam:PF01369
PROSITE:PS50190 SMART:SM00222 EMBL:AE013599 GO:GO:0006911
GO:GO:0009306 GO:GO:0007431 GO:GO:0000902 GO:GO:0007030
GO:GO:0005801 GO:GO:0000137 GO:GO:0035158 GO:GO:0002064
eggNOG:COG5307 GO:GO:0005086 GO:GO:0032012 Gene3D:1.10.1000.11
InterPro:IPR023394 SUPFAM:SSF48425 GO:GO:0035149 OMA:IAWLCCD
GeneTree:ENSGT00700000104554 RefSeq:NP_610761.2 UniGene:Dm.5126
ProteinModelPortal:A1Z8W8 SMR:A1Z8W8 STRING:A1Z8W8 PaxDb:A1Z8W8
PRIDE:A1Z8W8 EnsemblMetazoa:FBtr0087897 GeneID:36337
KEGG:dme:Dmel_CG8487 UCSC:CG8487-RB CTD:36337 FlyBase:FBgn0264560
InParanoid:A1Z8W8 OrthoDB:EOG4GXD2M PhylomeDB:A1Z8W8
GenomeRNAi:36337 NextBio:797993 Bgee:A1Z8W8 Uniprot:A1Z8W8
Length = 1983
Score = 193 (73.0 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
Identities = 36/54 (66%), Positives = 42/54 (77%)
Query: 6 LLDLMHTLHIRTAQIYRWWADENPETEMSS-LWSQGWCPLLQGIARLCCDTRKE 58
LLDLM+TL+ RTAQI+RWWA+E S+ LWS GWCPLLQGIARL D R+E
Sbjct: 1449 LLDLMYTLYTRTAQIFRWWAEEGCTVPQSAALWSPGWCPLLQGIARLAMDRRRE 1502
Score = 36 (17.7 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 59 PADSDLPLSKVSAPHPIINIVTQPQSYSISGSLD-PGAPP 97
P +S P + P+ +++ QP S+ + + P PP
Sbjct: 1722 PVES--PRRSIILQPPMADVLQQPPSFVFAQPIIVPPQPP 1759
Score = 33 (16.7 bits), Expect = 5.3e-14, Sum P(2) = 5.3e-14
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 59 PADSDLPLSKVSAPHPIINIVTQPQSYSISGSLDPGAPPQDGE 101
P +++ P S V NIVT +Y+ P AP E
Sbjct: 1794 PQEAEQPASIVQQT----NIVTTNNTYNSYAIEVPMAPETTAE 1832
>RGD|1307160 [details] [associations]
symbol:Gbf1 "golgi brefeldin A resistant guanine nucleotide
exchange factor 1" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005086 "ARF
guanyl-nucleotide exchange factor activity" evidence=IBA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0005777 "peroxisome"
evidence=IDA] [GO:0005788 "endoplasmic reticulum lumen"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=ISO]
[GO:0005795 "Golgi stack" evidence=IDA] [GO:0005801 "cis-Golgi
network" evidence=IDA] [GO:0005802 "trans-Golgi network"
evidence=IBA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016192 "vesicle-mediated transport" evidence=IBA] [GO:0032012
"regulation of ARF protein signal transduction" evidence=IEA]
InterPro:IPR000904 Pfam:PF01369 PROSITE:PS50190 SMART:SM00222
RGD:1307160 GO:GO:0005739 GO:GO:0005777 GO:GO:0016192 GO:GO:0005795
GO:GO:0005788 EMBL:AC096363 GO:GO:0005802 GO:GO:0005801
GO:GO:0005086 GO:GO:0032012 Gene3D:1.10.1000.11 InterPro:IPR023394
SUPFAM:SSF48425 GeneTree:ENSGT00700000104554 IPI:IPI00390323
IntAct:F1M8X9 Ensembl:ENSRNOT00000036156 Uniprot:F1M8X9
Length = 1807
Score = 165 (63.1 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 33/62 (53%), Positives = 39/62 (62%)
Query: 6 LLDLMHTLHIRTAQIYRWWADENP---------ETEMSSLWSQGWCPLLQGIARLCCDTR 56
LLDLMHTLH R A IY WA+E E + +LW+ WCPLLQGIA LCCD R
Sbjct: 1446 LLDLMHTLHTRAASIYSSWAEEQRHLETGGRKIEADSRTLWAHCWCPLLQGIACLCCDAR 1505
Query: 57 KE 58
++
Sbjct: 1506 RQ 1507
Score = 38 (18.4 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 59 PADSDLPLSKVSAPHPIINIVTQPQSYSISGSLDPGAP 96
P ++P S+V A P +P+S + S PG+P
Sbjct: 1702 PPPPEIP-SEVGACDP-----EKPESTRAASSSSPGSP 1733
>UNIPROTKB|F1NGJ3 [details] [associations]
symbol:GBF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005086 "ARF guanyl-nucleotide exchange factor
activity" evidence=IEA] [GO:0032012 "regulation of ARF protein
signal transduction" evidence=IEA] [GO:0005794 "Golgi apparatus"
evidence=IEA] InterPro:IPR000904 Pfam:PF01369 PROSITE:PS50190
SMART:SM00222 GO:GO:0005622 GO:GO:0005086 GO:GO:0032012
Gene3D:1.10.1000.11 InterPro:IPR023394 SUPFAM:SSF48425 OMA:IAWLCCD
GeneTree:ENSGT00700000104554 EMBL:AADN02027823 EMBL:AADN02027824
EMBL:AADN02027825 IPI:IPI00571847 Ensembl:ENSGALT00000009044
Uniprot:F1NGJ3
Length = 1804
Score = 170 (64.9 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 35/62 (56%), Positives = 39/62 (62%)
Query: 6 LLDLMHTLHIRTAQIYRWWADENPETEMS---------SLWSQGWCPLLQGIARLCCDTR 56
LLDLMHTLH R A IY WA+E E S +LWS WCPLLQGIA LCCD R
Sbjct: 1439 LLDLMHTLHTRAASIYSSWAEEQRHLETSGRKIEADSRTLWSNCWCPLLQGIAWLCCDAR 1498
Query: 57 KE 58
++
Sbjct: 1499 RQ 1500
>UNIPROTKB|F1PB58 [details] [associations]
symbol:GBF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0032012 "regulation of ARF protein signal transduction"
evidence=IEA] [GO:0005086 "ARF guanyl-nucleotide exchange factor
activity" evidence=IEA] InterPro:IPR000904 Pfam:PF01369
PROSITE:PS50190 SMART:SM00222 GO:GO:0005622 GO:GO:0005086
GO:GO:0032012 Gene3D:1.10.1000.11 InterPro:IPR023394
SUPFAM:SSF48425 GeneTree:ENSGT00700000104554 EMBL:AAEX03015485
Ensembl:ENSCAFT00000016098 Uniprot:F1PB58
Length = 1820
Score = 165 (63.1 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 33/62 (53%), Positives = 39/62 (62%)
Query: 6 LLDLMHTLHIRTAQIYRWWADENP---------ETEMSSLWSQGWCPLLQGIARLCCDTR 56
LLDLMHTLH R A IY WA+E E + +LW+ WCPLLQGIA LCCD R
Sbjct: 1459 LLDLMHTLHTRAASIYSSWAEEQRHLETGGRKIEADSRTLWAHCWCPLLQGIACLCCDAR 1518
Query: 57 KE 58
++
Sbjct: 1519 RQ 1520
>UNIPROTKB|F1PB51 [details] [associations]
symbol:GBF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032012 "regulation of ARF protein signal
transduction" evidence=IEA] [GO:0005086 "ARF guanyl-nucleotide
exchange factor activity" evidence=IEA] InterPro:IPR000904
Pfam:PF01369 PROSITE:PS50190 SMART:SM00222 GO:GO:0005622
GO:GO:0005086 GO:GO:0032012 Gene3D:1.10.1000.11 InterPro:IPR023394
SUPFAM:SSF48425 OMA:IAWLCCD GeneTree:ENSGT00700000104554
EMBL:AAEX03015485 Ensembl:ENSCAFT00000016108 Uniprot:F1PB51
Length = 1857
Score = 165 (63.1 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 33/62 (53%), Positives = 39/62 (62%)
Query: 6 LLDLMHTLHIRTAQIYRWWADENP---------ETEMSSLWSQGWCPLLQGIARLCCDTR 56
LLDLMHTLH R A IY WA+E E + +LW+ WCPLLQGIA LCCD R
Sbjct: 1496 LLDLMHTLHTRAASIYSSWAEEQRHLETGGRKIEADSRTLWAHCWCPLLQGIACLCCDAR 1555
Query: 57 KE 58
++
Sbjct: 1556 RQ 1557
>UNIPROTKB|Q92538 [details] [associations]
symbol:GBF1 "Golgi-specific brefeldin A-resistance guanine
nucleotide exchange factor 1" species:9606 "Homo sapiens"
[GO:0032012 "regulation of ARF protein signal transduction"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005777
"peroxisome" evidence=IEA] [GO:0005788 "endoplasmic reticulum
lumen" evidence=IEA] [GO:0005795 "Golgi stack" evidence=IEA]
[GO:0005801 "cis-Golgi network" evidence=IEA] [GO:0005086 "ARF
guanyl-nucleotide exchange factor activity" evidence=IBA]
[GO:0005802 "trans-Golgi network" evidence=IBA] [GO:0016192
"vesicle-mediated transport" evidence=IBA] [GO:0000139 "Golgi
membrane" evidence=TAS] [GO:0006890 "retrograde vesicle-mediated
transport, Golgi to ER" evidence=TAS] [GO:0006892 "post-Golgi
vesicle-mediated transport" evidence=TAS] [GO:0016044 "cellular
membrane organization" evidence=TAS] [GO:0048205 "COPI coating of
Golgi vesicle" evidence=TAS] [GO:0005794 "Golgi apparatus"
evidence=IDA] Reactome:REACT_11123 InterPro:IPR000904 Pfam:PF01369
PROSITE:PS50190 SMART:SM00222 GO:GO:0000139 EMBL:AL121928
GO:GO:0005802 GO:GO:0006892 Pathway_Interaction_DB:arf_3pathway
GO:GO:0048205 GO:GO:0006890 eggNOG:COG5307 GO:GO:0005086
GO:GO:0032012 Gene3D:1.10.1000.11 InterPro:IPR023394
SUPFAM:SSF48425 EMBL:AL160011 EMBL:AF068755 EMBL:D87435
EMBL:AL356420 EMBL:BC007941 EMBL:BC014171 IPI:IPI00021954
RefSeq:NP_001186307.1 RefSeq:NP_001186308.1 RefSeq:NP_004184.1
UniGene:Hs.290243 ProteinModelPortal:Q92538 SMR:Q92538
IntAct:Q92538 MINT:MINT-5006508 STRING:Q92538 PhosphoSite:Q92538
DMDM:13124260 PaxDb:Q92538 PeptideAtlas:Q92538 PRIDE:Q92538
Ensembl:ENST00000369983 GeneID:8729 KEGG:hsa:8729 UCSC:uc001kux.2
CTD:8729 GeneCards:GC10P103995 HGNC:HGNC:4181 HPA:HPA037759
HPA:HPA037760 MIM:603698 neXtProt:NX_Q92538 PharmGKB:PA28595
HOGENOM:HOG000230678 HOVERGEN:HBG005810 InParanoid:Q92538
OMA:IAWLCCD OrthoDB:EOG447FSC PhylomeDB:Q92538 ChiTaRS:GBF1
GenomeRNAi:8729 NextBio:32749 PMAP-CutDB:Q92538 ArrayExpress:Q92538
Bgee:Q92538 CleanEx:HS_GBF1 Genevestigator:Q92538
GermOnline:ENSG00000107862 Uniprot:Q92538
Length = 1859
Score = 165 (63.1 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 33/62 (53%), Positives = 39/62 (62%)
Query: 6 LLDLMHTLHIRTAQIYRWWADENP---------ETEMSSLWSQGWCPLLQGIARLCCDTR 56
LLDLMHTLH R A IY WA+E E + +LW+ WCPLLQGIA LCCD R
Sbjct: 1498 LLDLMHTLHTRAASIYSSWAEEQRHLETGGQKIEADSRTLWAHCWCPLLQGIACLCCDAR 1557
Query: 57 KE 58
++
Sbjct: 1558 RQ 1559
>UNIPROTKB|E1BMC4 [details] [associations]
symbol:GBF1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0032012
"regulation of ARF protein signal transduction" evidence=IEA]
[GO:0005086 "ARF guanyl-nucleotide exchange factor activity"
evidence=IEA] InterPro:IPR000904 Pfam:PF01369 PROSITE:PS50190
SMART:SM00222 GO:GO:0005622 GO:GO:0005086 GO:GO:0032012
Gene3D:1.10.1000.11 InterPro:IPR023394 SUPFAM:SSF48425 OMA:IAWLCCD
GeneTree:ENSGT00700000104554 EMBL:DAAA02058999 EMBL:DAAA02059000
IPI:IPI00924003 PRIDE:E1BMC4 Ensembl:ENSBTAT00000061619
ArrayExpress:E1BMC4 Uniprot:E1BMC4
Length = 1861
Score = 165 (63.1 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 33/62 (53%), Positives = 39/62 (62%)
Query: 6 LLDLMHTLHIRTAQIYRWWADENP---------ETEMSSLWSQGWCPLLQGIARLCCDTR 56
LLDLMHTLH R A IY WA+E E + +LW+ WCPLLQGIA LCCD R
Sbjct: 1500 LLDLMHTLHTRAASIYSSWAEEQRHLETGGRKIEADSRTLWAHCWCPLLQGIACLCCDAR 1559
Query: 57 KE 58
++
Sbjct: 1560 RQ 1561
>UNIPROTKB|F1S8S9 [details] [associations]
symbol:GBF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0032012
"regulation of ARF protein signal transduction" evidence=IEA]
[GO:0005086 "ARF guanyl-nucleotide exchange factor activity"
evidence=IEA] InterPro:IPR000904 Pfam:PF01369 PROSITE:PS50190
SMART:SM00222 GO:GO:0005622 GO:GO:0005086 GO:GO:0032012
Gene3D:1.10.1000.11 InterPro:IPR023394 SUPFAM:SSF48425 OMA:IAWLCCD
GeneTree:ENSGT00700000104554 EMBL:CU407032
Ensembl:ENSSSCT00000011572 Uniprot:F1S8S9
Length = 1865
Score = 165 (63.1 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 33/62 (53%), Positives = 39/62 (62%)
Query: 6 LLDLMHTLHIRTAQIYRWWADENP---------ETEMSSLWSQGWCPLLQGIARLCCDTR 56
LLDLMHTLH R A IY WA+E E + +LW+ WCPLLQGIA LCCD R
Sbjct: 1504 LLDLMHTLHTRAASIYSSWAEEQRHLETGGRKIEADSRTLWAHCWCPLLQGIACLCCDAR 1563
Query: 57 KE 58
++
Sbjct: 1564 RQ 1565
>ZFIN|ZDB-GENE-081107-54 [details] [associations]
symbol:si:dkey-183c23.1 "si:dkey-183c23.1"
species:7955 "Danio rerio" [GO:0032012 "regulation of ARF protein
signal transduction" evidence=IEA] [GO:0005086 "ARF
guanyl-nucleotide exchange factor activity" evidence=IEA]
InterPro:IPR000904 Pfam:PF01369 PROSITE:PS50190 SMART:SM00222
ZFIN:ZDB-GENE-081107-54 GO:GO:0005622 GO:GO:0005086 GO:GO:0032012
Gene3D:1.10.1000.11 InterPro:IPR023394 SUPFAM:SSF48425
GeneTree:ENSGT00700000104554 EMBL:CU463183 EMBL:CU651580
IPI:IPI00494632 Ensembl:ENSDART00000046792 Bgee:F1R3A2
Uniprot:F1R3A2
Length = 1786
Score = 152 (58.6 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 32/63 (50%), Positives = 39/63 (61%)
Query: 6 LLDLMHTLHIRTAQIYRWWADENP---------ETEMSSLWSQGWCPLLQ-GIARLCCDT 55
LLDLMHTLH R A IY WA+E E + +LW+ WCPLLQ G+A LCCD
Sbjct: 1434 LLDLMHTLHTRAAGIYSSWAEEQRHLEDAGKKIEADSQTLWTSCWCPLLQVGMAWLCCDA 1493
Query: 56 RKE 58
R++
Sbjct: 1494 RRQ 1496
Score = 36 (17.7 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 56 RKEPADSDLPLSKVSAPHPIINIVTQPQSYSISGSLDPGAPP 97
+K P +S PLS+ +P ++ QP ++ L G PP
Sbjct: 1731 KKSPPESPPPLSQ--SP-----LILQP----LASPLQVGVPP 1761
>UNIPROTKB|H8ESE7 [details] [associations]
symbol:gbf-1 "Protein GBF-1, isoform b" species:6239
"Caenorhabditis elegans" [GO:0005802 "trans-Golgi network"
evidence=IBA] [GO:0005086 "ARF guanyl-nucleotide exchange factor
activity" evidence=IBA] GO:GO:0008340 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0006915 GO:GO:0002119 GO:GO:0040011
GO:GO:0000003 GO:GO:0005802 GO:GO:0005086 EMBL:AL032627 CTD:176609
RefSeq:NP_001255139.1 GeneID:13191451 KEGG:cel:CELE_C24H11.7a
WormBase:C24H11.7b Uniprot:H8ESE7
Length = 485
Score = 100 (40.3 bits), Expect = 5.5e-07, Sum P(2) = 5.5e-07
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 6 LLDLMHTLHIRTAQIYRWWAD-ENPETE----MSSLWSQGWCPLLQGIARLCCDTRK 57
LLDL LH +T I+ WA +P ++ +W+ W PLLQ I RL CD R+
Sbjct: 5 LLDLCSQLHSQTPAIFAKWAQGASPAASDLATVAFIWTDIWRPLLQAIGRLSCDCRR 61
Score = 45 (20.9 bits), Expect = 5.5e-07, Sum P(2) = 5.5e-07
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 69 VSAPHPIINIVTQPQSYSISGSLDP-GAPPQ 98
+SAP PI + +T+ +S G P G+PPQ
Sbjct: 283 ISAPIPIQHPLTEVIVHS--GPTSPIGSPPQ 311
Score = 34 (17.0 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 64 LPLSKVSAPHPII---------NIVTQPQSYSISGSLDPGAP 96
LPL A HPI+ ++ T PQ+ + +L P AP
Sbjct: 423 LPLPAHPAYHPIVAPSVNSAFTHVYTPPQNNA--PALAPSAP 462
>WB|WBGene00007703 [details] [associations]
symbol:gbf-1 species:6239 "Caenorhabditis elegans"
[GO:0005086 "ARF guanyl-nucleotide exchange factor activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0032012
"regulation of ARF protein signal transduction" evidence=IEA]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0006915
"apoptotic process" evidence=IMP] [GO:0032940 "secretion by cell"
evidence=IMP] InterPro:IPR000904 Pfam:PF01369 PROSITE:PS50190
SMART:SM00222 GO:GO:0008340 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0006915 GO:GO:0002119 GO:GO:0040011
GO:GO:0000003 GO:GO:0005802 GO:GO:0005086 GO:GO:0032012
Gene3D:1.10.1000.11 InterPro:IPR023394 SUPFAM:SSF48425 OMA:IAWLCCD
GeneTree:ENSGT00700000104554 EMBL:Z81475 EMBL:AL032627
RefSeq:NP_001255140.1 ProteinModelPortal:G5EGS5 SMR:G5EGS5
EnsemblMetazoa:C24H11.7 GeneID:176609 KEGG:cel:CELE_C24H11.7
CTD:176609 WormBase:C24H11.7a Uniprot:G5EGS5
Length = 1975
Score = 100 (40.3 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 6 LLDLMHTLHIRTAQIYRWWAD-ENPETE----MSSLWSQGWCPLLQGIARLCCDTRK 57
LLDL LH +T I+ WA +P ++ +W+ W PLLQ I RL CD R+
Sbjct: 1495 LLDLCSQLHSQTPAIFAKWAQGASPAASDLATVAFIWTDIWRPLLQAIGRLSCDCRR 1551
Score = 45 (20.9 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 69 VSAPHPIINIVTQPQSYSISGSLDP-GAPPQ 98
+SAP PI + +T+ +S G P G+PPQ
Sbjct: 1773 ISAPIPIQHPLTEVIVHS--GPTSPIGSPPQ 1801
Score = 34 (17.0 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 64 LPLSKVSAPHPII---------NIVTQPQSYSISGSLDPGAP 96
LPL A HPI+ ++ T PQ+ + +L P AP
Sbjct: 1913 LPLPAHPAYHPIVAPSVNSAFTHVYTPPQNNA--PALAPSAP 1952
>UNIPROTKB|G5EGS5 [details] [associations]
symbol:gbf-1 "Protein GBF-1, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005802 "trans-Golgi network"
evidence=IBA] [GO:0005086 "ARF guanyl-nucleotide exchange factor
activity" evidence=IBA] InterPro:IPR000904 Pfam:PF01369
PROSITE:PS50190 SMART:SM00222 GO:GO:0008340 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0006915 GO:GO:0002119
GO:GO:0040011 GO:GO:0000003 GO:GO:0005802 GO:GO:0005086
GO:GO:0032012 Gene3D:1.10.1000.11 InterPro:IPR023394
SUPFAM:SSF48425 OMA:IAWLCCD GeneTree:ENSGT00700000104554
EMBL:Z81475 EMBL:AL032627 RefSeq:NP_001255140.1
ProteinModelPortal:G5EGS5 SMR:G5EGS5 EnsemblMetazoa:C24H11.7
GeneID:176609 KEGG:cel:CELE_C24H11.7 CTD:176609 WormBase:C24H11.7a
Uniprot:G5EGS5
Length = 1975
Score = 100 (40.3 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 6 LLDLMHTLHIRTAQIYRWWAD-ENPETE----MSSLWSQGWCPLLQGIARLCCDTRK 57
LLDL LH +T I+ WA +P ++ +W+ W PLLQ I RL CD R+
Sbjct: 1495 LLDLCSQLHSQTPAIFAKWAQGASPAASDLATVAFIWTDIWRPLLQAIGRLSCDCRR 1551
Score = 45 (20.9 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 69 VSAPHPIINIVTQPQSYSISGSLDP-GAPPQ 98
+SAP PI + +T+ +S G P G+PPQ
Sbjct: 1773 ISAPIPIQHPLTEVIVHS--GPTSPIGSPPQ 1801
Score = 34 (17.0 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 64 LPLSKVSAPHPII---------NIVTQPQSYSISGSLDPGAP 96
LPL A HPI+ ++ T PQ+ + +L P AP
Sbjct: 1913 LPLPAHPAYHPIVAPSVNSAFTHVYTPPQNNA--PALAPSAP 1952
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.134 0.436 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 104 104 0.00091 102 3 11 22 0.45 30
29 0.50 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 12
No. of states in DFA: 593 (63 KB)
Total size of DFA: 137 KB (2085 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:05
No. of threads or processors used: 24
Search cpu time: 12.82u 0.07s 12.89t Elapsed: 00:00:07
Total cpu time: 12.82u 0.07s 12.89t Elapsed: 00:00:12
Start: Thu Aug 15 13:57:01 2013 End: Thu Aug 15 13:57:13 2013