RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12389
         (104 letters)



>d1to0a_ c.116.1.3 (A:) Hypothetical protein YydA {Bacillus subtilis
           [TaxId: 1423]}
          Length = 157

 Score = 23.5 bits (50), Expect = 5.7
 Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 10/75 (13%)

Query: 21  YRWWADENPETEMSSLWSQGWCPLLQGIARLCC----------DTRKEPADSDLPLSKVS 70
           +        + + S   +     L                   DT  + AD  L  SK++
Sbjct: 72  HVIALAIEGKMKTSEELADTIDKLATYGKSKVTFVIGGSLGLSDTVMKRADEKLSFSKMT 131

Query: 71  APHPIINIVTQPQSY 85
            PH ++ ++   Q Y
Sbjct: 132 FPHQLMRLILVEQIY 146


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.134    0.436 

Gapped
Lambda     K      H
   0.267   0.0515    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 403,051
Number of extensions: 15458
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 2
Length of query: 104
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 39
Effective length of database: 1,515,146
Effective search space: 59090694
Effective search space used: 59090694
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.4 bits)