BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12393
(155 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8N2G6|ZCH24_HUMAN Zinc finger CCHC domain-containing protein 24 OS=Homo sapiens
GN=ZCCHC24 PE=1 SV=1
Length = 241
Score = 211 bits (538), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 105/149 (70%), Positives = 112/149 (75%), Gaps = 19/149 (12%)
Query: 1 DIVDSLCDLHL---EKKSFKQPPSAYLCHLCFVGGHYITDCPLFNMSPFSKYRQLFLFQA 57
+ + DL L +K K+PP YLCHLCF GHYI DCP QA
Sbjct: 107 SLTEHFSDLTLTSEARKPSKRPPPNYLCHLCFNKGHYIKDCP----------------QA 150
Query: 58 RPKGEGLTPYQGKKRCFGEYKCSKCKRKWMSGNSWANMGQECIKCNINVYPHKQRPLEKP 117
RPKGEGLTPYQGKKRCFGEYKC KCKRKWMSGNSWANMGQECIKC+INVYPHKQRPLEKP
Sbjct: 151 RPKGEGLTPYQGKKRCFGEYKCPKCKRKWMSGNSWANMGQECIKCHINVYPHKQRPLEKP 210
Query: 118 DGLDVSDQSKVHPMYLCEKCKQLGYYCRK 146
DGLDVSDQSK HP +LCEKCK LGYYCR+
Sbjct: 211 DGLDVSDQSKEHPQHLCEKCKVLGYYCRR 239
>sp|B2RVL6|ZCH24_MOUSE Zinc finger CCHC domain-containing protein 24 OS=Mus musculus
GN=Zcchc24 PE=2 SV=1
Length = 241
Score = 211 bits (537), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 105/148 (70%), Positives = 112/148 (75%), Gaps = 19/148 (12%)
Query: 2 IVDSLCDLHL---EKKSFKQPPSAYLCHLCFVGGHYITDCPLFNMSPFSKYRQLFLFQAR 58
+ + DL L +K K+PP YLCHLCF GHYI DCP QAR
Sbjct: 108 LTEHFSDLTLTSEARKPSKRPPPNYLCHLCFNKGHYIKDCP----------------QAR 151
Query: 59 PKGEGLTPYQGKKRCFGEYKCSKCKRKWMSGNSWANMGQECIKCNINVYPHKQRPLEKPD 118
PKGEGLTPYQGKKRCFGEYKC KCKRKWMSGNSWANMGQECIKC+INVYPHKQRPLEKPD
Sbjct: 152 PKGEGLTPYQGKKRCFGEYKCPKCKRKWMSGNSWANMGQECIKCHINVYPHKQRPLEKPD 211
Query: 119 GLDVSDQSKVHPMYLCEKCKQLGYYCRK 146
GLDVSDQSK HP +LCEKCK LGYYCR+
Sbjct: 212 GLDVSDQSKEHPQHLCEKCKVLGYYCRR 239
>sp|Q8HXK7|ZCH24_MACFA Zinc finger CCHC domain-containing protein 24 OS=Macaca
fascicularis GN=ZCCHC24 PE=2 SV=1
Length = 241
Score = 210 bits (535), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 104/148 (70%), Positives = 112/148 (75%), Gaps = 19/148 (12%)
Query: 2 IVDSLCDLHL---EKKSFKQPPSAYLCHLCFVGGHYITDCPLFNMSPFSKYRQLFLFQAR 58
+ + DL L +K K+PP YLCHLCF GHYI DCP QAR
Sbjct: 108 LTEHFSDLTLTSEARKPSKRPPPNYLCHLCFNKGHYIKDCP----------------QAR 151
Query: 59 PKGEGLTPYQGKKRCFGEYKCSKCKRKWMSGNSWANMGQECIKCNINVYPHKQRPLEKPD 118
PKGEGLTPYQGKKRCFGEYKC KCKRKWMSGNSWANMGQECIKC+INVYPHKQRPLEKPD
Sbjct: 152 PKGEGLTPYQGKKRCFGEYKCPKCKRKWMSGNSWANMGQECIKCHINVYPHKQRPLEKPD 211
Query: 119 GLDVSDQSKVHPMYLCEKCKQLGYYCRK 146
GLDVSDQSK HP +LCE+CK LGYYCR+
Sbjct: 212 GLDVSDQSKEHPQHLCEECKVLGYYCRR 239
>sp|Q7Z6E9|RBBP6_HUMAN E3 ubiquitin-protein ligase RBBP6 OS=Homo sapiens GN=RBBP6 PE=1
SV=1
Length = 1792
Score = 33.1 bits (74), Expect = 0.62, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 13 KKSFKQPPSAYLCHLCFVGGHYITDCP 39
KK PP +Y C C GHYI +CP
Sbjct: 149 KKPLGPPPPSYTCFRCGKPGHYIKNCP 175
>sp|P97868|RBBP6_MOUSE E3 ubiquitin-protein ligase RBBP6 OS=Mus musculus GN=Rbbp6 PE=1
SV=5
Length = 1790
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 10 HLEKKSFKQPPSAYLCHLCFVGGHYITDCP 39
+++K PP +Y C C GHYI +CP
Sbjct: 147 YMKKTLVGPPPPSYTCFRCGKPGHYIKNCP 176
>sp|Q9USW3|YHZ7_SCHPO Probable glycosidase C21B10.07 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPBC21B10.07 PE=3 SV=1
Length = 419
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 22/52 (42%)
Query: 77 YKCSKCKRKWMSGNSWANMGQECIKCNINVYPHKQRPLEKPDGLDVSDQSKV 128
Y C W G+ W N G+ I +NV Q L DG ++ D +V
Sbjct: 217 YGCGTWPAFWTLGDDWPNGGEIDIVEGVNVGTSNQVTLHTGDGCEMEDIKRV 268
>sp|O94264|YORF_SCHPO Uncharacterized RING finger protein P8B7.15c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBP8B7.15c PE=4 SV=1
Length = 482
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 17 KQPPSAYLCHLCFVGGHYITDCP 39
K PP Y+C+ C GH+I CP
Sbjct: 177 KPPPPGYICYRCGQKGHWIQACP 199
>sp|P42664|UVS2_XENLA Embryonic protein UVS.2 OS=Xenopus laevis PE=2 SV=2
Length = 514
Score = 30.0 bits (66), Expect = 6.1, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 108 PHKQRPLEKPDGLDVSDQSKVHPMYLCEKCKQLGYY 143
P P+ + DGL + D SK++ +Y C C L Y
Sbjct: 259 PDPNVPIGQRDGLSILDISKINKLYECNVCSNLLPY 294
>sp|P15798|MNCP_OXYFA Macronuclear solute carrier homolog CR-MSC OS=Oxytricha fallax PE=3
SV=2
Length = 371
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 45 PFSKYRQLFLFQARPKGEGLTPYQGKKRCFGEYKCSKCKRKWMS 88
PF R L RP G PY G CF + +C KWMS
Sbjct: 237 PFDMIRTR-LHTMRPLPNGQMPYNGMIDCFNKIIKYECNSKWMS 279
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.140 0.479
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,820,159
Number of Sequences: 539616
Number of extensions: 2786274
Number of successful extensions: 4869
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 4846
Number of HSP's gapped (non-prelim): 25
length of query: 155
length of database: 191,569,459
effective HSP length: 107
effective length of query: 48
effective length of database: 133,830,547
effective search space: 6423866256
effective search space used: 6423866256
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)