Query psy12393
Match_columns 155
No_of_seqs 63 out of 65
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 18:00:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12393.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12393hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ysa_A Retinoblastoma-binding 98.6 6.2E-09 2.1E-13 69.8 1.0 29 18-46 3-31 (55)
2 1u6p_A GAG polyprotein; MLV, A 96.9 0.00043 1.5E-08 46.3 2.5 26 15-40 16-41 (56)
3 1a6b_B Momulv, zinc finger pro 96.8 0.00052 1.8E-08 43.1 1.9 24 17-40 5-28 (40)
4 1dsq_A Nucleic acid binding pr 96.3 0.0013 4.5E-08 37.2 1.2 23 23-45 3-25 (26)
5 1nc8_A Nucleocapsid protein; H 95.0 0.01 3.6E-07 34.1 1.7 20 21-40 5-24 (29)
6 2ec7_A GAG polyprotein (PR55GA 92.6 0.064 2.2E-06 33.7 2.2 18 23-40 28-45 (49)
7 2bl6_A Nucleocapsid protein P1 92.1 0.054 1.8E-06 32.2 1.3 17 23-39 20-36 (37)
8 1cl4_A Protein (GAG polyprotei 92.1 0.061 2.1E-06 34.8 1.7 21 21-41 29-49 (60)
9 2ihx_A Nucleocapsid (NC) prote 91.5 0.079 2.7E-06 34.7 1.7 21 21-41 29-49 (61)
10 2a51_A Nucleocapsid protein; s 90.9 0.084 2.9E-06 31.6 1.3 17 23-39 22-38 (39)
11 1a1t_A Nucleocapsid protein; s 90.9 0.11 3.9E-06 32.9 2.0 16 24-39 35-50 (55)
12 3ts2_A Protein LIN-28 homolog 90.7 0.12 3.9E-06 39.4 2.2 21 20-40 117-137 (148)
13 3alr_A Nanos protein; zinc-fin 90.3 0.059 2E-06 40.5 0.2 24 22-45 71-97 (106)
14 2ec7_A GAG polyprotein (PR55GA 90.0 0.13 4.6E-06 32.2 1.7 21 20-40 4-24 (49)
15 1a1t_A Nucleocapsid protein; s 89.9 0.076 2.6E-06 33.7 0.5 25 16-40 6-30 (55)
16 2bl6_A Nucleocapsid protein P1 88.7 0.15 5E-06 30.2 1.1 17 24-40 2-18 (37)
17 2a51_A Nucleocapsid protein; s 88.4 0.13 4.5E-06 30.8 0.8 17 24-40 2-18 (39)
18 2cqf_A RNA-binding protein LIN 87.6 0.22 7.4E-06 32.9 1.5 20 21-40 28-47 (63)
19 2li8_A Protein LIN-28 homolog 87.6 0.2 6.9E-06 34.4 1.4 17 23-39 47-63 (74)
20 2ihx_A Nucleocapsid (NC) prote 84.7 0.31 1.1E-05 31.7 1.2 18 23-40 5-22 (61)
21 1cl4_A Protein (GAG polyprotei 84.7 0.18 6.3E-06 32.4 0.0 18 24-41 3-20 (60)
22 2cqf_A RNA-binding protein LIN 81.1 0.59 2E-05 30.7 1.4 18 23-40 8-25 (63)
23 3nyb_B Protein AIR2; polya RNA 77.1 1.9 6.4E-05 30.1 3.1 23 19-41 43-65 (83)
24 2li8_A Protein LIN-28 homolog 76.8 1 3.6E-05 30.7 1.6 21 20-40 22-42 (74)
25 2lli_A Protein AIR2; RNA surve 71.1 1.5 5E-05 31.6 1.3 20 22-41 64-83 (124)
26 3nyb_B Protein AIR2; polya RNA 70.0 1.3 4.5E-05 31.0 0.8 18 23-40 6-23 (83)
27 2lli_A Protein AIR2; RNA surve 67.9 1.7 5.9E-05 31.2 1.1 18 23-40 5-22 (124)
28 3ts2_A Protein LIN-28 homolog 57.3 5.4 0.00019 30.1 2.2 20 21-40 96-115 (148)
29 1zfo_A LAsp-1; LIM domain, zin 51.5 5.7 0.0002 22.6 1.2 15 95-109 2-16 (31)
30 2m0f_A Zinc finger and BTB dom 49.8 5.9 0.0002 19.1 0.9 16 75-90 1-16 (29)
31 2lcq_A Putative toxin VAPC6; P 46.0 9.8 0.00033 28.2 2.0 27 76-106 132-158 (165)
32 1twf_L ABC10-alpha, DNA-direct 44.3 11 0.00037 25.7 1.8 29 75-106 27-55 (70)
33 1qyp_A RNA polymerase II; tran 43.7 9.9 0.00034 24.0 1.5 25 55-88 31-55 (57)
34 2kvf_A Zinc finger and BTB dom 39.3 11 0.00037 18.2 1.0 14 77-90 4-17 (28)
35 1znf_A 31ST zinc finger from X 36.2 12 0.0004 17.8 0.8 14 77-90 2-15 (27)
36 1gh9_A 8.3 kDa protein (gene M 35.3 14 0.00048 25.3 1.3 37 74-114 2-38 (71)
37 2kvh_A Zinc finger and BTB dom 34.9 14 0.00049 17.7 1.0 13 77-89 4-16 (27)
38 2lvu_A Zinc finger and BTB dom 41.0 8.2 0.00028 18.5 0.0 15 77-91 3-17 (26)
39 2kdx_A HYPA, hydrogenase/ureas 34.7 20 0.00069 25.5 2.1 51 48-105 43-99 (119)
40 1ard_A Yeast transcription fac 34.6 12 0.00043 17.9 0.7 14 77-90 3-16 (29)
41 1rik_A E6APC1 peptide; E6-bind 33.3 14 0.00049 17.7 0.8 15 77-91 3-17 (29)
42 2dmi_A Teashirt homolog 3; zin 32.3 6 0.0002 26.0 -1.0 30 77-106 20-60 (115)
43 1tfi_A Transcriptional elongat 30.9 17 0.00058 23.0 1.0 24 55-87 25-48 (50)
44 2kvg_A Zinc finger and BTB dom 30.5 15 0.00051 17.9 0.6 13 77-89 4-16 (27)
45 2m0d_A Zinc finger and BTB dom 30.3 18 0.00062 17.2 0.9 14 77-90 4-17 (30)
46 1twf_I B12.6, DNA-directed RNA 29.4 14 0.00049 26.8 0.6 15 76-90 100-114 (122)
47 2m0e_A Zinc finger and BTB dom 29.4 16 0.00055 17.3 0.6 14 77-90 3-16 (29)
48 2elq_A Zinc finger protein 406 29.3 20 0.00067 18.5 1.0 13 77-89 10-22 (36)
49 1paa_A Yeast transcription fac 28.3 17 0.00058 17.6 0.6 14 77-90 3-16 (30)
50 2elm_A Zinc finger protein 406 28.3 20 0.00069 18.9 0.9 14 77-90 10-23 (37)
51 2elp_A Zinc finger protein 406 28.2 21 0.00071 18.5 1.0 13 77-89 10-22 (37)
52 1v6g_A Actin binding LIM prote 28.2 12 0.00043 24.1 0.0 16 72-88 12-27 (81)
53 2elr_A Zinc finger protein 406 27.9 18 0.00063 18.4 0.7 14 77-90 10-23 (36)
54 2elx_A Zinc finger protein 406 27.3 22 0.00076 17.9 1.0 14 77-90 8-21 (35)
55 1klr_A Zinc finger Y-chromosom 27.2 19 0.00066 17.1 0.7 14 77-90 3-16 (30)
56 3a43_A HYPD, hydrogenase nicke 26.6 31 0.0011 25.6 1.9 41 47-90 40-84 (139)
57 3h0g_I DNA-directed RNA polyme 26.5 28 0.00096 25.0 1.7 12 76-87 100-111 (113)
58 1p7a_A BF3, BKLF, kruppel-like 26.5 21 0.0007 18.4 0.7 14 77-90 12-25 (37)
59 2elv_A Zinc finger protein 406 25.6 25 0.00085 18.1 1.0 15 77-91 10-24 (36)
60 2lvt_A Zinc finger and BTB dom 31.3 15 0.00051 17.8 0.0 16 77-92 3-18 (29)
61 2lvr_A Zinc finger and BTB dom 30.6 16 0.00053 17.7 0.0 16 77-92 4-19 (30)
62 2adr_A ADR1; transcription reg 24.7 13 0.00043 21.5 -0.4 18 77-94 3-20 (60)
63 2lce_A B-cell lymphoma 6 prote 24.5 13 0.00044 22.6 -0.4 31 76-106 17-55 (74)
64 1srk_A Zinc finger protein ZFP 23.7 28 0.00097 17.6 1.0 13 77-89 8-20 (35)
65 2elt_A Zinc finger protein 406 23.2 29 0.001 17.6 1.0 15 76-90 9-23 (36)
66 2eof_A Zinc finger protein 268 22.4 30 0.001 18.5 0.9 18 77-94 13-30 (44)
67 1njq_A Superman protein; zinc- 22.2 30 0.001 18.2 0.9 16 77-92 7-22 (39)
68 3po3_S Transcription elongatio 21.9 62 0.0021 25.0 3.0 44 18-87 133-176 (178)
69 1rim_A E6APC2 peptide; E6-bind 21.7 28 0.00095 17.9 0.7 15 77-91 3-17 (33)
70 2el5_A Zinc finger protein 268 21.4 33 0.0011 18.2 1.0 17 77-93 11-27 (42)
71 2ytb_A Zinc finger protein 32; 20.7 31 0.0011 18.2 0.7 18 77-94 12-29 (42)
72 1pqv_S STP-alpha, transcriptio 20.6 35 0.0012 28.4 1.4 41 21-87 267-307 (309)
73 2emb_A Zinc finger protein 473 20.5 34 0.0012 18.4 0.9 18 77-94 13-30 (44)
74 2emi_A Zinc finger protein 484 20.5 35 0.0012 18.5 1.0 18 77-94 13-30 (46)
75 4gzn_C ZFP-57, zinc finger pro 20.4 19 0.00064 22.6 -0.3 30 77-106 5-42 (60)
76 2epc_A Zinc finger protein 32; 20.4 36 0.0012 18.0 1.0 17 77-93 12-28 (42)
77 2eos_A B-cell lymphoma 6 prote 20.4 33 0.0011 18.3 0.8 18 77-94 12-29 (42)
78 2els_A Zinc finger protein 406 20.3 35 0.0012 17.4 0.9 13 77-89 10-22 (36)
No 1
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.63 E-value=6.2e-09 Score=69.75 Aligned_cols=29 Identities=38% Similarity=0.752 Sum_probs=26.0
Q ss_pred CCCCceeeeeccCCCcccccCCCCCCCch
Q psy12393 18 QPPSAYLCHLCFVGGHYITDCPLFNMSPF 46 (155)
Q Consensus 18 ~pp~~y~ch~c~~~ghyi~dcp~~~~~~~ 46 (155)
.+|++|.|++|.++||+|+|||++.+..|
T Consensus 3 ~~p~~~~C~kCGk~GH~~k~Cp~~~~~~f 31 (55)
T 2ysa_A 3 SGSSGYTCFRCGKPGHYIKNCPTNGDKNF 31 (55)
T ss_dssp CSSSSCCCTTTCCTTSCGGGCSGGGCSSC
T ss_pred CCCCCCccccCCCcCcccccCCCCCCCCc
Confidence 46889999999999999999998777766
No 2
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=96.92 E-value=0.00043 Score=46.26 Aligned_cols=26 Identities=27% Similarity=0.591 Sum_probs=22.8
Q ss_pred cCCCCCCceeeeeccCCCcccccCCC
Q psy12393 15 SFKQPPSAYLCHLCFVGGHYITDCPL 40 (155)
Q Consensus 15 ~~~~pp~~y~ch~c~~~ghyi~dcp~ 40 (155)
..+.+.+.-.|..|.+.|||.+|||.
T Consensus 16 ~~~~~~~~~~C~~Cge~GH~ardCp~ 41 (56)
T 1u6p_A 16 RRRSQLDRDQCAYCKEKGHWAKDCPK 41 (56)
T ss_dssp CCSTTCCTTBCSSSCCBSSCGGGCTT
T ss_pred cCCCCCCCCcceeCCCCCcccccCcC
Confidence 44667788999999999999999995
No 3
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=96.79 E-value=0.00052 Score=43.13 Aligned_cols=24 Identities=29% Similarity=0.688 Sum_probs=21.7
Q ss_pred CCCCCceeeeeccCCCcccccCCC
Q psy12393 17 KQPPSAYLCHLCFVGGHYITDCPL 40 (155)
Q Consensus 17 ~~pp~~y~ch~c~~~ghyi~dcp~ 40 (155)
..+.....|..|.+.|||+.|||.
T Consensus 5 ~~~~~~~~C~~Cgk~GH~ardCP~ 28 (40)
T 1a6b_B 5 RSQLDRDQCAYCKEKGHWAKDCPK 28 (40)
T ss_dssp CCSCCSSSCSSSCCTTCCTTSCSS
T ss_pred cCCCCCCeeeECCCCCcchhhCcC
Confidence 567778999999999999999995
No 4
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=96.25 E-value=0.0013 Score=37.19 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=17.4
Q ss_pred eeeeeccCCCcccccCCCCCCCc
Q psy12393 23 YLCHLCFVGGHYITDCPLFNMSP 45 (155)
Q Consensus 23 y~ch~c~~~ghyi~dcp~~~~~~ 45 (155)
..|..|.+.||+..|||....+|
T Consensus 3 ~~Cf~CG~~GH~ardC~~~~~~~ 25 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEEXXXX 25 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC----
T ss_pred CeeEeCCCCCcccccCCCccccc
Confidence 46999999999999999765544
No 5
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=94.99 E-value=0.01 Score=34.06 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=17.4
Q ss_pred CceeeeeccCCCcccccCCC
Q psy12393 21 SAYLCHLCFVGGHYITDCPL 40 (155)
Q Consensus 21 ~~y~ch~c~~~ghyi~dcp~ 40 (155)
....|..|.+.||+..|||.
T Consensus 5 ~~~~C~nCgk~GH~ar~C~~ 24 (29)
T 1nc8_A 5 KVIRCWNCGKEGHSARQCRA 24 (29)
T ss_dssp CCCBCTTTSCBSSCGGGCCS
T ss_pred CCCEEEECCccccCHhHCcc
Confidence 34679999999999999993
No 6
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=92.60 E-value=0.064 Score=33.73 Aligned_cols=18 Identities=33% Similarity=0.693 Sum_probs=12.2
Q ss_pred eeeeeccCCCcccccCCC
Q psy12393 23 YLCHLCFVGGHYITDCPL 40 (155)
Q Consensus 23 y~ch~c~~~ghyi~dcp~ 40 (155)
-.|.+|.+.||+..|||.
T Consensus 28 ~~C~~Cg~~GH~~~~C~~ 45 (49)
T 2ec7_A 28 QGCWKCGKTGHVMAKCPE 45 (49)
T ss_dssp CSCSSSCCSSCCGGGCCS
T ss_pred CeeCcCCCcCCccCCCcC
Confidence 457777777777777764
No 7
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=92.09 E-value=0.054 Score=32.17 Aligned_cols=17 Identities=29% Similarity=0.815 Sum_probs=15.9
Q ss_pred eeeeeccCCCcccccCC
Q psy12393 23 YLCHLCFVGGHYITDCP 39 (155)
Q Consensus 23 y~ch~c~~~ghyi~dcp 39 (155)
-.|.+|.++||+.+|||
T Consensus 20 ~~C~~Cg~~GH~a~~C~ 36 (37)
T 2bl6_A 20 KVCFKCKQPGHFSKQCR 36 (37)
T ss_dssp TTCSSCCCTTGGGGTTC
T ss_pred CeEccCCCcCCccCcCc
Confidence 57999999999999998
No 8
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=92.06 E-value=0.061 Score=34.75 Aligned_cols=21 Identities=29% Similarity=0.591 Sum_probs=18.5
Q ss_pred CceeeeeccCCCcccccCCCC
Q psy12393 21 SAYLCHLCFVGGHYITDCPLF 41 (155)
Q Consensus 21 ~~y~ch~c~~~ghyi~dcp~~ 41 (155)
+.-.|.+|.+.||+.+|||..
T Consensus 29 ~~~~C~~Cg~~GH~ar~C~~~ 49 (60)
T 1cl4_A 29 VPGLCPRCKRGKHWANECKSK 49 (60)
T ss_dssp CCCSCSSCSSCSSCSTTCCCT
T ss_pred CCcceeECCCCCCccCcCCCc
Confidence 457899999999999999963
No 9
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=91.46 E-value=0.079 Score=34.65 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=18.0
Q ss_pred CceeeeeccCCCcccccCCCC
Q psy12393 21 SAYLCHLCFVGGHYITDCPLF 41 (155)
Q Consensus 21 ~~y~ch~c~~~ghyi~dcp~~ 41 (155)
+.-.|.+|.+.||+..|||..
T Consensus 29 ~~~~C~~Cg~~GH~ar~C~~~ 49 (61)
T 2ihx_A 29 SRERCQLCNGMGHNAKQCRKR 49 (61)
T ss_dssp CCSBCTTTCCBSSCGGGCCCC
T ss_pred CCCeeCCCCCCCCCcCCCcCC
Confidence 356899999999999999953
No 10
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=90.91 E-value=0.084 Score=31.65 Aligned_cols=17 Identities=29% Similarity=0.585 Sum_probs=12.8
Q ss_pred eeeeeccCCCcccccCC
Q psy12393 23 YLCHLCFVGGHYITDCP 39 (155)
Q Consensus 23 y~ch~c~~~ghyi~dcp 39 (155)
-.|.+|.+.||+..|||
T Consensus 22 ~~C~~Cg~~GH~~~~C~ 38 (39)
T 2a51_A 22 EGCWNCGSKEHRFAQCP 38 (39)
T ss_dssp SSCTTTCCSSSCTTTSC
T ss_pred CccccCCCCCCccCcCc
Confidence 46777777777777777
No 11
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=90.85 E-value=0.11 Score=32.92 Aligned_cols=16 Identities=38% Similarity=0.787 Sum_probs=8.4
Q ss_pred eeeeccCCCcccccCC
Q psy12393 24 LCHLCFVGGHYITDCP 39 (155)
Q Consensus 24 ~ch~c~~~ghyi~dcp 39 (155)
.|.+|.+.||+..|||
T Consensus 35 ~C~~Cg~~GH~~~~C~ 50 (55)
T 1a1t_A 35 GCWKCGKEGHQMKDCT 50 (55)
T ss_dssp BCTTTCCBSSCGGGCS
T ss_pred EeCCCCCcCCccCCCc
Confidence 4555555555555555
No 12
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=90.67 E-value=0.12 Score=39.44 Aligned_cols=21 Identities=38% Similarity=0.956 Sum_probs=14.3
Q ss_pred CCceeeeeccCCCcccccCCC
Q psy12393 20 PSAYLCHLCFVGGHYITDCPL 40 (155)
Q Consensus 20 p~~y~ch~c~~~ghyi~dcp~ 40 (155)
|..-.|++|.+.||+..|||.
T Consensus 117 ~~~~~C~~Cg~~GH~~r~Cp~ 137 (148)
T 3ts2_A 117 PQPKKCHFCQSINHMVASCPL 137 (148)
T ss_dssp CCCCCCTTTCCSSCCGGGCTT
T ss_pred CCCCcccccCCcCCEeccCcC
Confidence 334567777777777777774
No 13
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=90.27 E-value=0.059 Score=40.47 Aligned_cols=24 Identities=33% Similarity=0.690 Sum_probs=21.3
Q ss_pred ceeeeeccCCC---cccccCCCCCCCc
Q psy12393 22 AYLCHLCFVGG---HYITDCPLFNMSP 45 (155)
Q Consensus 22 ~y~ch~c~~~g---hyi~dcp~~~~~~ 45 (155)
.|.|.+|...| |-|+-||++++..
T Consensus 71 ~Y~CpiCGATGd~AHT~kYCP~~~~~~ 97 (106)
T 3alr_A 71 QYKCPLCGATGAKAHTKRFCPMVDKNY 97 (106)
T ss_dssp GCCCTTTCCCGGGCCCGGGCTTCGGGG
T ss_pred cccCCCCCCcCCcccceecCCCCCCcc
Confidence 69999999999 9999999977553
No 14
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=90.00 E-value=0.13 Score=32.24 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=17.9
Q ss_pred CCceeeeeccCCCcccccCCC
Q psy12393 20 PSAYLCHLCFVGGHYITDCPL 40 (155)
Q Consensus 20 p~~y~ch~c~~~ghyi~dcp~ 40 (155)
...-.|..|.+.||+..|||.
T Consensus 4 ~r~~~C~~Cg~~GH~a~~C~~ 24 (49)
T 2ec7_A 4 RKVIRCWNCGKEGHSARQCRA 24 (49)
T ss_dssp CCCCBCTTTCCBTCCTTTCCC
T ss_pred CCcCeeeecCCCCcChhhCcC
Confidence 344579999999999999994
No 15
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=89.94 E-value=0.076 Score=33.73 Aligned_cols=25 Identities=24% Similarity=0.558 Sum_probs=20.2
Q ss_pred CCCCCCceeeeeccCCCcccccCCC
Q psy12393 16 FKQPPSAYLCHLCFVGGHYITDCPL 40 (155)
Q Consensus 16 ~~~pp~~y~ch~c~~~ghyi~dcp~ 40 (155)
.+.|.....|..|.+.||+..|||.
T Consensus 6 f~g~~~~~~C~~Cg~~GH~a~~C~~ 30 (55)
T 1a1t_A 6 FRNQRKTVKCFNCGKEGHIAKNCRA 30 (55)
T ss_dssp GGGGGGTCBCTTTCCBSSCGGGCSS
T ss_pred cCCCCCCcceeeeCCCCcChhhcCC
Confidence 3444555789999999999999994
No 16
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=88.73 E-value=0.15 Score=30.24 Aligned_cols=17 Identities=29% Similarity=0.600 Sum_probs=15.4
Q ss_pred eeeeccCCCcccccCCC
Q psy12393 24 LCHLCFVGGHYITDCPL 40 (155)
Q Consensus 24 ~ch~c~~~ghyi~dcp~ 40 (155)
.|-.|.+.||+..|||.
T Consensus 2 ~C~~Cg~~GH~~~~C~~ 18 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRA 18 (37)
T ss_dssp CBSSSCCSSCCTTTSSC
T ss_pred cccccCCCCcchhhCcC
Confidence 48899999999999994
No 17
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=88.39 E-value=0.13 Score=30.76 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=15.5
Q ss_pred eeeeccCCCcccccCCC
Q psy12393 24 LCHLCFVGGHYITDCPL 40 (155)
Q Consensus 24 ~ch~c~~~ghyi~dcp~ 40 (155)
.|..|.+.||+..|||.
T Consensus 2 ~C~~Cg~~GH~a~~C~~ 18 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQ 18 (39)
T ss_dssp BCTTTCCBSSCTTTCCS
T ss_pred eeeccCCCCcccccCCC
Confidence 58899999999999994
No 18
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.58 E-value=0.22 Score=32.85 Aligned_cols=20 Identities=35% Similarity=0.878 Sum_probs=15.0
Q ss_pred CceeeeeccCCCcccccCCC
Q psy12393 21 SAYLCHLCFVGGHYITDCPL 40 (155)
Q Consensus 21 ~~y~ch~c~~~ghyi~dcp~ 40 (155)
..-.|.+|.+.||+..|||.
T Consensus 28 ~~~~C~~Cg~~GH~ar~Cp~ 47 (63)
T 2cqf_A 28 QPKKCHFCQSISHMVASCPL 47 (63)
T ss_dssp CSSCCTTTCCSSSCTTTCTG
T ss_pred CCCccCCcCCcCCccCcCCC
Confidence 34578888888888888884
No 19
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=87.57 E-value=0.2 Score=34.38 Aligned_cols=17 Identities=35% Similarity=0.944 Sum_probs=8.3
Q ss_pred eeeeeccCCCcccccCC
Q psy12393 23 YLCHLCFVGGHYITDCP 39 (155)
Q Consensus 23 y~ch~c~~~ghyi~dcp 39 (155)
-.|.+|.+.||+..|||
T Consensus 47 ~~C~~Cg~~GH~ar~Cp 63 (74)
T 2li8_A 47 KKCHFCQSISHMVASCP 63 (74)
T ss_dssp CCCTTTCCTTSCGGGCT
T ss_pred CccCCcCCcCCccCcCc
Confidence 34444445555445554
No 20
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=84.74 E-value=0.31 Score=31.71 Aligned_cols=18 Identities=44% Similarity=0.901 Sum_probs=16.3
Q ss_pred eeeeeccCCCcccccCCC
Q psy12393 23 YLCHLCFVGGHYITDCPL 40 (155)
Q Consensus 23 y~ch~c~~~ghyi~dcp~ 40 (155)
-.|..|.+.||+..|||.
T Consensus 5 ~~C~~Cg~~GH~a~~C~~ 22 (61)
T 2ihx_A 5 GLCYTCGSPGHYQAQCPK 22 (61)
T ss_dssp TBCSSSCCBTCCGGGCTT
T ss_pred CcccccCCCCeehhhCcC
Confidence 369999999999999994
No 21
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=84.65 E-value=0.18 Score=32.44 Aligned_cols=18 Identities=28% Similarity=0.693 Sum_probs=0.0
Q ss_pred eeeeccCCCcccccCCCC
Q psy12393 24 LCHLCFVGGHYITDCPLF 41 (155)
Q Consensus 24 ~ch~c~~~ghyi~dcp~~ 41 (155)
.|..|.+.||+..|||..
T Consensus 3 ~Cf~Cg~~GH~a~~C~~~ 20 (60)
T 1cl4_A 3 SCFKCGKKGHFAKNCHEH 20 (60)
T ss_dssp ------------------
T ss_pred ccccCCCCCcCHhhCcCC
Confidence 589999999999999953
No 22
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.14 E-value=0.59 Score=30.69 Aligned_cols=18 Identities=28% Similarity=0.384 Sum_probs=16.4
Q ss_pred eeeeeccCCCcccccCCC
Q psy12393 23 YLCHLCFVGGHYITDCPL 40 (155)
Q Consensus 23 y~ch~c~~~ghyi~dcp~ 40 (155)
-.|..|.+.||+..|||.
T Consensus 8 ~~C~~Cg~~GH~a~~C~~ 25 (63)
T 2cqf_A 8 DRCYNCGGLDHHAKECKL 25 (63)
T ss_dssp CCCSSSCCSSSCTTTCCS
T ss_pred CcccccCCCCcChhhCCC
Confidence 469999999999999994
No 23
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=77.12 E-value=1.9 Score=30.15 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=18.5
Q ss_pred CCCceeeeeccCCCcccccCCCC
Q psy12393 19 PPSAYLCHLCFVGGHYITDCPLF 41 (155)
Q Consensus 19 pp~~y~ch~c~~~ghyi~dcp~~ 41 (155)
|+..=.|-.|.+.|||=.|||..
T Consensus 43 p~~~~~CYnCG~~GH~~rdC~~~ 65 (83)
T 3nyb_B 43 PFHTIYCYNCGGKGHFGDDCKEK 65 (83)
T ss_dssp --CCCBCSSSSCBSSCGGGCSSC
T ss_pred CCCCCeecccCCCCcCcccCCcc
Confidence 44556799999999999999964
No 24
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=76.79 E-value=1 Score=30.75 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=18.1
Q ss_pred CCceeeeeccCCCcccccCCC
Q psy12393 20 PSAYLCHLCFVGGHYITDCPL 40 (155)
Q Consensus 20 p~~y~ch~c~~~ghyi~dcp~ 40 (155)
...-.|-.|.+.||+..|||.
T Consensus 22 ~r~~~C~~Cg~~GH~a~~C~~ 42 (74)
T 2li8_A 22 SKGDRCYNCGGLDHHAKECKL 42 (74)
T ss_dssp STTSCCTTTCCSSSCTTTCSS
T ss_pred CCCCcccccCCcCcCcccCCC
Confidence 455679999999999999994
No 25
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=71.12 E-value=1.5 Score=31.58 Aligned_cols=20 Identities=30% Similarity=0.612 Sum_probs=17.2
Q ss_pred ceeeeeccCCCcccccCCCC
Q psy12393 22 AYLCHLCFVGGHYITDCPLF 41 (155)
Q Consensus 22 ~y~ch~c~~~ghyi~dcp~~ 41 (155)
.-.|.+|.+.||+..|||..
T Consensus 64 ~~~C~~Cg~~GH~~~~Cp~~ 83 (124)
T 2lli_A 64 KVQCTLCKSKKHSKERCPSI 83 (124)
T ss_dssp CCSSSSSCSSCCCTTTCCCS
T ss_pred CccCCCCCcCCcchhhCCCc
Confidence 35799999999999999953
No 26
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=69.95 E-value=1.3 Score=30.98 Aligned_cols=18 Identities=33% Similarity=0.669 Sum_probs=15.8
Q ss_pred eeeeeccCCCcccccCCC
Q psy12393 23 YLCHLCFVGGHYITDCPL 40 (155)
Q Consensus 23 y~ch~c~~~ghyi~dcp~ 40 (155)
-.|.+|.++||+-.|||+
T Consensus 6 ~~C~~Cg~~GH~~~~Cp~ 23 (83)
T 3nyb_B 6 VQCTLCKSKKHSKERCPS 23 (83)
T ss_dssp -CCSSSCCSSSCGGGCGG
T ss_pred CCCCCCCCCCCccccCCC
Confidence 369999999999999994
No 27
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=67.86 E-value=1.7 Score=31.18 Aligned_cols=18 Identities=39% Similarity=0.800 Sum_probs=16.0
Q ss_pred eeeeeccCCCcccccCCC
Q psy12393 23 YLCHLCFVGGHYITDCPL 40 (155)
Q Consensus 23 y~ch~c~~~ghyi~dcp~ 40 (155)
-.|..|.+.||+..|||.
T Consensus 5 ~~C~~C~~~GH~~~~Cp~ 22 (124)
T 2lli_A 5 PKCNNCSQRGHLKKDCPH 22 (124)
T ss_dssp SCCSSCSSSSCCTTTTTS
T ss_pred CcccCCCCCCcCcccCcC
Confidence 359999999999999995
No 28
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=57.26 E-value=5.4 Score=30.07 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=17.6
Q ss_pred CceeeeeccCCCcccccCCC
Q psy12393 21 SAYLCHLCFVGGHYITDCPL 40 (155)
Q Consensus 21 ~~y~ch~c~~~ghyi~dcp~ 40 (155)
....|..|.+.||...+||.
T Consensus 96 ~~~~C~~Cg~~GH~a~~C~~ 115 (148)
T 3ts2_A 96 GGDRCYNCGGLDHHAKECKL 115 (148)
T ss_dssp CSCCCTTTCCSSCCGGGCCS
T ss_pred CCCcccEeCCccchhhhCCC
Confidence 35679999999999999993
No 29
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=51.49 E-value=5.7 Score=22.58 Aligned_cols=15 Identities=40% Similarity=0.984 Sum_probs=12.9
Q ss_pred ccccccccCccccce
Q psy12393 95 MGQECIKCNINVYPH 109 (155)
Q Consensus 95 ~gQ~C~kC~~~vyPy 109 (155)
+...|..|++.|||=
T Consensus 2 m~~~C~~C~k~Vy~~ 16 (31)
T 1zfo_A 2 MNPNCARCGKIVYPT 16 (31)
T ss_dssp CCCBCSSSCSBCCGG
T ss_pred CCCcCCccCCEEecc
Confidence 456899999999986
No 30
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=49.81 E-value=5.9 Score=19.08 Aligned_cols=16 Identities=25% Similarity=0.868 Sum_probs=11.6
Q ss_pred eeeecccCcCccccce
Q psy12393 75 GEYKCSKCKRKWMSGN 90 (155)
Q Consensus 75 G~F~Ck~C~~~WsSaN 90 (155)
|.|.|..|++.+.+..
T Consensus 1 ~~~~C~~C~k~f~~~~ 16 (29)
T 2m0f_A 1 GPLKCRECGKQFTTSG 16 (29)
T ss_dssp CCEECTTTSCEESCHH
T ss_pred CCccCCCCCCccCChh
Confidence 3588999988876543
No 31
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=46.01 E-value=9.8 Score=28.23 Aligned_cols=27 Identities=33% Similarity=0.701 Sum_probs=21.3
Q ss_pred eeecccCcCccccceEEecccccccccCccc
Q psy12393 76 EYKCSKCKRKWMSGNSWANMGQECIKCNINV 106 (155)
Q Consensus 76 ~F~Ck~C~~~WsSaNsWan~gQ~C~kC~~~v 106 (155)
.|+|..|++.++.- ....+|-.|+..+
T Consensus 132 ~y~C~~Cg~~~~~~----~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 132 RYVCIGCGRKFSTL----PPGGVCPDCGSKV 158 (165)
T ss_dssp CEEESSSCCEESSC----CGGGBCTTTCCBE
T ss_pred EEECCCCCCcccCC----CCCCcCCCCCCcc
Confidence 59999999998743 3356999999864
No 32
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=44.25 E-value=11 Score=25.70 Aligned_cols=29 Identities=21% Similarity=0.534 Sum_probs=22.6
Q ss_pred eeeecccCcCccccceEEecccccccccCccc
Q psy12393 75 GEYKCSKCKRKWMSGNSWANMGQECIKCNINV 106 (155)
Q Consensus 75 G~F~Ck~C~~~WsSaNsWan~gQ~C~kC~~~v 106 (155)
-+|.|..|+..++-. ......|..|+..|
T Consensus 27 v~Y~C~~CG~~~e~~---~~d~irCp~CG~RI 55 (70)
T 1twf_L 27 LKYICAECSSKLSLS---RTDAVRCKDCGHRI 55 (70)
T ss_dssp CCEECSSSCCEECCC---TTSTTCCSSSCCCC
T ss_pred EEEECCCCCCcceeC---CCCCccCCCCCceE
Confidence 468999999997754 45667899999644
No 33
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=43.72 E-value=9.9 Score=24.02 Aligned_cols=25 Identities=44% Similarity=0.745 Sum_probs=17.5
Q ss_pred hhcCCCCCCCCCCCCcccceeeeecccCcCcccc
Q psy12393 55 FQARPKGEGLTPYQGKKRCFGEYKCSKCKRKWMS 88 (155)
Q Consensus 55 ~~~rp~~~~~TPyQg~kR~fG~F~Ck~C~~~WsS 88 (155)
++.|...|+.| -.|.|.+|+.+|..
T Consensus 31 ~Q~rsadep~T---------~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 31 MQTRAGDEPST---------IFYKCTKCGHTWRS 55 (57)
T ss_dssp ECCSSSSCSSE---------EEEEESSSCCEEEC
T ss_pred eecccCCCCCc---------EEEEcCCCCCEecc
Confidence 34555556555 35899999999975
No 34
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=39.31 E-value=11 Score=18.20 Aligned_cols=14 Identities=29% Similarity=0.854 Sum_probs=11.0
Q ss_pred eecccCcCccccce
Q psy12393 77 YKCSKCKRKWMSGN 90 (155)
Q Consensus 77 F~Ck~C~~~WsSaN 90 (155)
|.|..|++.+.+..
T Consensus 4 ~~C~~C~k~f~~~~ 17 (28)
T 2kvf_A 4 YSCSVCGKRFSLKH 17 (28)
T ss_dssp EECSSSCCEESCHH
T ss_pred ccCCCCCcccCCHH
Confidence 78999999887643
No 35
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=36.21 E-value=12 Score=17.84 Aligned_cols=14 Identities=36% Similarity=1.035 Sum_probs=10.2
Q ss_pred eecccCcCccccce
Q psy12393 77 YKCSKCKRKWMSGN 90 (155)
Q Consensus 77 F~Ck~C~~~WsSaN 90 (155)
|.|..|++.+.+..
T Consensus 2 ~~C~~C~k~f~~~~ 15 (27)
T 1znf_A 2 YKCGLCERSFVEKS 15 (27)
T ss_dssp CBCSSSCCBCSSHH
T ss_pred ccCCCCCCcCCCHH
Confidence 67888888876543
No 36
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=35.28 E-value=14 Score=25.28 Aligned_cols=37 Identities=22% Similarity=0.591 Sum_probs=26.0
Q ss_pred eeeeecccCcCccccceEEecccccccccCccccceeeecc
Q psy12393 74 FGEYKCSKCKRKWMSGNSWANMGQECIKCNINVYPHKQRPL 114 (155)
Q Consensus 74 fG~F~Ck~C~~~WsSaNsWan~gQ~C~kC~~~vyPyrq~~l 114 (155)
|-.|.|+ |++-|-+-- -..+-.|. |++.+..=+++-+
T Consensus 2 Y~vv~C~-C~~~~~~~~--~~kT~~C~-CG~~~~~~k~rif 38 (71)
T 1gh9_A 2 YIIFRCD-CGRALYSRE--GAKTRKCV-CGRTVNVKDRRIF 38 (71)
T ss_dssp EEEEEET-TSCCEEEET--TCSEEEET-TTEEEECCSSSCB
T ss_pred eEEEECC-CCCEEEEcC--CCcEEECC-CCCeeeeceEEEE
Confidence 7789999 999876433 12356898 9988876655433
No 37
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=34.87 E-value=14 Score=17.75 Aligned_cols=13 Identities=23% Similarity=0.570 Sum_probs=10.3
Q ss_pred eecccCcCccccc
Q psy12393 77 YKCSKCKRKWMSG 89 (155)
Q Consensus 77 F~Ck~C~~~WsSa 89 (155)
|.|..|++.+.+.
T Consensus 4 ~~C~~C~k~f~~~ 16 (27)
T 2kvh_A 4 FSCSLCPQRSRDF 16 (27)
T ss_dssp EECSSSSCEESSH
T ss_pred ccCCCcChhhCCH
Confidence 7899999887654
No 38
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=41.03 E-value=8.2 Score=18.52 Aligned_cols=15 Identities=20% Similarity=0.959 Sum_probs=10.8
Q ss_pred eecccCcCccccceE
Q psy12393 77 YKCSKCKRKWMSGNS 91 (155)
Q Consensus 77 F~Ck~C~~~WsSaNs 91 (155)
|.|..|++.+.+...
T Consensus 3 ~~C~~C~k~f~~~~~ 17 (26)
T 2lvu_A 3 YVCERCGKRFVQSSQ 17 (26)
Confidence 678888888775543
No 39
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=34.74 E-value=20 Score=25.52 Aligned_cols=51 Identities=16% Similarity=0.257 Sum_probs=34.2
Q ss_pred hHhhhhhhhcCCCCCCCC-CCCCc----ccceeeeecccCcCccccceEEecccc-cccccCcc
Q psy12393 48 KYRQLFLFQARPKGEGLT-PYQGK----KRCFGEYKCSKCKRKWMSGNSWANMGQ-ECIKCNIN 105 (155)
Q Consensus 48 ~~r~~~~~~~rp~~~~~T-PyQg~----kR~fG~F~Ck~C~~~WsSaNsWan~gQ-~C~kC~~~ 105 (155)
..+++|+|-+= ..-| .+.|- +..-+.|+|.+|+..|+-. .... .|-.|+..
T Consensus 43 ~e~l~f~f~~~---~~gt~~~e~a~L~i~~~p~~~~C~~CG~~~e~~----~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 43 KSLFVSAFETF---REESLVCKDAILDIVDEKVELECKDCSHVFKPN----ALDYGVCEKCHSK 99 (119)
T ss_dssp HHHHHHHHHHH---GGGCTTTSSCCEEEEEECCEEECSSSSCEECSC----CSTTCCCSSSSSC
T ss_pred HHHHHHHHHHH---HhCChhhcCcEEEEEeccceEEcCCCCCEEeCC----CCCCCcCccccCC
Confidence 35667777654 1126 65532 3467899999999999852 2345 79999976
No 40
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=34.56 E-value=12 Score=17.89 Aligned_cols=14 Identities=21% Similarity=0.759 Sum_probs=10.6
Q ss_pred eecccCcCccccce
Q psy12393 77 YKCSKCKRKWMSGN 90 (155)
Q Consensus 77 F~Ck~C~~~WsSaN 90 (155)
|.|..|++.+.+..
T Consensus 3 ~~C~~C~~~f~~~~ 16 (29)
T 1ard_A 3 FVCEVCTRAFARQE 16 (29)
T ss_dssp CBCTTTCCBCSSHH
T ss_pred eECCCCCcccCCHH
Confidence 67889998877543
No 41
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=33.27 E-value=14 Score=17.73 Aligned_cols=15 Identities=20% Similarity=0.981 Sum_probs=11.0
Q ss_pred eecccCcCccccceE
Q psy12393 77 YKCSKCKRKWMSGNS 91 (155)
Q Consensus 77 F~Ck~C~~~WsSaNs 91 (155)
|.|..|++.+.+...
T Consensus 3 ~~C~~C~k~f~~~~~ 17 (29)
T 1rik_A 3 FACPECPKRFMRSDH 17 (29)
T ss_dssp EECSSSSCEESCSHH
T ss_pred ccCCCCCchhCCHHH
Confidence 788899888765443
No 42
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.31 E-value=6 Score=26.04 Aligned_cols=30 Identities=7% Similarity=0.124 Sum_probs=20.0
Q ss_pred eecccCcCccccceEEecc-----------cccccccCccc
Q psy12393 77 YKCSKCKRKWMSGNSWANM-----------GQECIKCNINV 106 (155)
Q Consensus 77 F~Ck~C~~~WsSaNsWan~-----------gQ~C~kC~~~v 106 (155)
|.|..|++.+.+......- ...|..|+..+
T Consensus 20 ~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f 60 (115)
T 2dmi_A 20 FRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRW 60 (115)
T ss_dssp EEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCC
T ss_pred EECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCccc
Confidence 8899999998876544331 12377787654
No 43
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=30.91 E-value=17 Score=23.01 Aligned_cols=24 Identities=29% Similarity=0.677 Sum_probs=16.8
Q ss_pred hhcCCCCCCCCCCCCcccceeeeecccCcCccc
Q psy12393 55 FQARPKGEGLTPYQGKKRCFGEYKCSKCKRKWM 87 (155)
Q Consensus 55 ~~~rp~~~~~TPyQg~kR~fG~F~Ck~C~~~Ws 87 (155)
++.|-.-|+.|- .|.|.+|+.+|.
T Consensus 25 ~Q~RsaDE~mT~---------Fy~C~~Cg~~w~ 48 (50)
T 1tfi_A 25 VQTRSADEPMTT---------FVVCNECGNRWK 48 (50)
T ss_dssp ECSSSSSSCCEE---------EEEESSSCCEEE
T ss_pred ecCcCCCCCceE---------EEEcCCCCCeEE
Confidence 355555565553 588999999996
No 44
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=30.54 E-value=15 Score=17.90 Aligned_cols=13 Identities=31% Similarity=0.697 Sum_probs=10.2
Q ss_pred eecccCcCccccc
Q psy12393 77 YKCSKCKRKWMSG 89 (155)
Q Consensus 77 F~Ck~C~~~WsSa 89 (155)
|.|..|++.+.+.
T Consensus 4 ~~C~~C~k~f~~~ 16 (27)
T 2kvg_A 4 YRCPLCRAGCPSL 16 (27)
T ss_dssp EEETTTTEEESCH
T ss_pred cCCCCCCcccCCH
Confidence 7899999887654
No 45
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=30.30 E-value=18 Score=17.22 Aligned_cols=14 Identities=29% Similarity=0.857 Sum_probs=10.6
Q ss_pred eecccCcCccccce
Q psy12393 77 YKCSKCKRKWMSGN 90 (155)
Q Consensus 77 F~Ck~C~~~WsSaN 90 (155)
|.|..|++.+.+..
T Consensus 4 ~~C~~C~~~f~~~~ 17 (30)
T 2m0d_A 4 YQCDYCGRSFSDPT 17 (30)
T ss_dssp EECTTTCCEESCHH
T ss_pred ccCCCCCcccCCHH
Confidence 78899998876543
No 46
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=29.45 E-value=14 Score=26.84 Aligned_cols=15 Identities=20% Similarity=0.558 Sum_probs=12.6
Q ss_pred eeecccCcCccccce
Q psy12393 76 EYKCSKCKRKWMSGN 90 (155)
Q Consensus 76 ~F~Ck~C~~~WsSaN 90 (155)
+|.|.+|+.+|...|
T Consensus 100 fy~C~~C~~~w~~nn 114 (122)
T 1twf_I 100 FFVCLSCSHIFTSDQ 114 (122)
T ss_dssp EEEETTTCCEEECCT
T ss_pred EEEeCCCCCEeccCC
Confidence 578999999998755
No 47
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=29.42 E-value=16 Score=17.27 Aligned_cols=14 Identities=29% Similarity=0.717 Sum_probs=10.3
Q ss_pred eecccCcCccccce
Q psy12393 77 YKCSKCKRKWMSGN 90 (155)
Q Consensus 77 F~Ck~C~~~WsSaN 90 (155)
|.|..|++.+.+..
T Consensus 3 ~~C~~C~~~f~~~~ 16 (29)
T 2m0e_A 3 HKCPHCDKKFNQVG 16 (29)
T ss_dssp CCCSSCCCCCCTTT
T ss_pred CcCCCCCcccCCHH
Confidence 67888888876544
No 48
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.30 E-value=20 Score=18.48 Aligned_cols=13 Identities=38% Similarity=0.675 Sum_probs=10.7
Q ss_pred eecccCcCccccc
Q psy12393 77 YKCSKCKRKWMSG 89 (155)
Q Consensus 77 F~Ck~C~~~WsSa 89 (155)
|.|..|++.+.+.
T Consensus 10 ~~C~~C~k~f~~~ 22 (36)
T 2elq_A 10 FKCSLCEYATRSK 22 (36)
T ss_dssp EECSSSSCEESCH
T ss_pred ccCCCCCchhCCH
Confidence 7899999988754
No 49
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=28.32 E-value=17 Score=17.59 Aligned_cols=14 Identities=29% Similarity=0.899 Sum_probs=9.9
Q ss_pred eecccCcCccccce
Q psy12393 77 YKCSKCKRKWMSGN 90 (155)
Q Consensus 77 F~Ck~C~~~WsSaN 90 (155)
|.|..|++.+.+..
T Consensus 3 ~~C~~C~k~f~~~~ 16 (30)
T 1paa_A 3 YACGLCNRAFTRRD 16 (30)
T ss_dssp SBCTTTCCBCSSSH
T ss_pred cCCcccCcccCChH
Confidence 67888888776543
No 50
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.29 E-value=20 Score=18.87 Aligned_cols=14 Identities=36% Similarity=0.826 Sum_probs=11.5
Q ss_pred eecccCcCccccce
Q psy12393 77 YKCSKCKRKWMSGN 90 (155)
Q Consensus 77 F~Ck~C~~~WsSaN 90 (155)
|.|..|++.+.+..
T Consensus 10 ~~C~~C~k~f~~~~ 23 (37)
T 2elm_A 10 YYCSQCHYSSITKN 23 (37)
T ss_dssp EECSSSSCEEECHH
T ss_pred eECCCCCcccCCHH
Confidence 88999999887644
No 51
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.23 E-value=21 Score=18.49 Aligned_cols=13 Identities=31% Similarity=0.715 Sum_probs=11.0
Q ss_pred eecccCcCccccc
Q psy12393 77 YKCSKCKRKWMSG 89 (155)
Q Consensus 77 F~Ck~C~~~WsSa 89 (155)
|.|..|++.+.+.
T Consensus 10 ~~C~~C~k~f~~~ 22 (37)
T 2elp_A 10 MKCPYCDFYFMKN 22 (37)
T ss_dssp EECSSSSCEECSS
T ss_pred eECCCCChhhccC
Confidence 7899999988764
No 52
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.19 E-value=12 Score=24.06 Aligned_cols=16 Identities=25% Similarity=0.690 Sum_probs=9.6
Q ss_pred cceeeeecccCcCcccc
Q psy12393 72 RCFGEYKCSKCKRKWMS 88 (155)
Q Consensus 72 R~fG~F~Ck~C~~~WsS 88 (155)
+.||. .|..|++....
T Consensus 12 ~~~~~-~C~~C~~~I~~ 27 (81)
T 1v6g_A 12 RLYGT-RCFSCDQFIEG 27 (81)
T ss_dssp GSCCC-BCTTTCCBCCS
T ss_pred hHhCC-cCccccCEecc
Confidence 34554 67777776663
No 53
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.89 E-value=18 Score=18.42 Aligned_cols=14 Identities=29% Similarity=0.626 Sum_probs=11.0
Q ss_pred eecccCcCccccce
Q psy12393 77 YKCSKCKRKWMSGN 90 (155)
Q Consensus 77 F~Ck~C~~~WsSaN 90 (155)
|.|..|++.+.+..
T Consensus 10 ~~C~~C~k~f~~~~ 23 (36)
T 2elr_A 10 HLCDMCGKKFKSKG 23 (36)
T ss_dssp CBCTTTCCBCSSHH
T ss_pred eecCcCCCCcCchH
Confidence 67999999887643
No 54
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=27.31 E-value=22 Score=17.88 Aligned_cols=14 Identities=36% Similarity=0.878 Sum_probs=11.1
Q ss_pred eecccCcCccccce
Q psy12393 77 YKCSKCKRKWMSGN 90 (155)
Q Consensus 77 F~Ck~C~~~WsSaN 90 (155)
|.|..|++.+.+..
T Consensus 8 ~~C~~C~k~f~~~~ 21 (35)
T 2elx_A 8 YVCALCLKKFVSSI 21 (35)
T ss_dssp EECSSSCCEESSHH
T ss_pred eECCCCcchhCCHH
Confidence 78999999887643
No 55
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=27.19 E-value=19 Score=17.11 Aligned_cols=14 Identities=21% Similarity=0.688 Sum_probs=10.2
Q ss_pred eecccCcCccccce
Q psy12393 77 YKCSKCKRKWMSGN 90 (155)
Q Consensus 77 F~Ck~C~~~WsSaN 90 (155)
|.|..|++.+.+..
T Consensus 3 ~~C~~C~k~f~~~~ 16 (30)
T 1klr_A 3 YQCQYCEFRSADSS 16 (30)
T ss_dssp CCCSSSSCCCSCSH
T ss_pred ccCCCCCCccCCHH
Confidence 67888888876543
No 56
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=26.57 E-value=31 Score=25.60 Aligned_cols=41 Identities=17% Similarity=0.278 Sum_probs=27.9
Q ss_pred hhHhhhhhhhcCCCCCCCCCCCCcc----cceeeeecccCcCccccce
Q psy12393 47 SKYRQLFLFQARPKGEGLTPYQGKK----RCFGEYKCSKCKRKWMSGN 90 (155)
Q Consensus 47 ~~~r~~~~~~~rp~~~~~TPyQg~k----R~fG~F~Ck~C~~~WsSaN 90 (155)
+..+++|.|-+== .-|++.|-+ ..-+.++|..|+..|+-..
T Consensus 40 ~~e~l~faf~~~~---~gt~~e~A~L~i~~~p~~~~C~~CG~~~~~~~ 84 (139)
T 3a43_A 40 AEDIVKFAMEQLF---AGTIAEGAEIEFVEEEAVFKCRNCNYEWKLKE 84 (139)
T ss_dssp CHHHHHHHHHHHH---TTSTTTTCEEEEEEECCEEEETTTCCEEEGGG
T ss_pred hHHHHHHHHHHHH---cCCcccCCEEEEEecCCcEECCCCCCEEeccc
Confidence 3456777776542 227777622 4678999999999998644
No 57
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=26.47 E-value=28 Score=24.95 Aligned_cols=12 Identities=25% Similarity=0.636 Sum_probs=7.2
Q ss_pred eeecccCcCccc
Q psy12393 76 EYKCSKCKRKWM 87 (155)
Q Consensus 76 ~F~Ck~C~~~Ws 87 (155)
+|.|.+|+.+|.
T Consensus 100 fy~C~~C~~~w~ 111 (113)
T 3h0g_I 100 IYVCVHCGFAFE 111 (113)
T ss_dssp EEEESSSCCCCC
T ss_pred EEEcCCCCCEEe
Confidence 356666666664
No 58
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=26.47 E-value=21 Score=18.43 Aligned_cols=14 Identities=21% Similarity=0.961 Sum_probs=11.0
Q ss_pred eecccCcCccccce
Q psy12393 77 YKCSKCKRKWMSGN 90 (155)
Q Consensus 77 F~Ck~C~~~WsSaN 90 (155)
|.|..|++.+.+..
T Consensus 12 ~~C~~C~k~f~~~~ 25 (37)
T 1p7a_A 12 FQCPDCDRSFSRSD 25 (37)
T ss_dssp BCCTTTCCCBSSHH
T ss_pred ccCCCCCcccCcHH
Confidence 67999999887643
No 59
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.59 E-value=25 Score=18.05 Aligned_cols=15 Identities=33% Similarity=0.842 Sum_probs=11.6
Q ss_pred eecccCcCccccceE
Q psy12393 77 YKCSKCKRKWMSGNS 91 (155)
Q Consensus 77 F~Ck~C~~~WsSaNs 91 (155)
|.|..|++.+.+...
T Consensus 10 ~~C~~C~k~f~~~~~ 24 (36)
T 2elv_A 10 YDCHICERKFKNELD 24 (36)
T ss_dssp EECSSSCCEESSHHH
T ss_pred eECCCCCCccCCHHH
Confidence 789999998876543
No 60
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=31.29 E-value=15 Score=17.83 Aligned_cols=16 Identities=19% Similarity=0.602 Sum_probs=10.7
Q ss_pred eecccCcCccccceEE
Q psy12393 77 YKCSKCKRKWMSGNSW 92 (155)
Q Consensus 77 F~Ck~C~~~WsSaNsW 92 (155)
|.|..|++.+.+....
T Consensus 3 ~~C~~C~k~f~~~~~l 18 (29)
T 2lvt_A 3 CQCVMCGKAFTQASSL 18 (29)
Confidence 6788888877654443
No 61
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=30.62 E-value=16 Score=17.66 Aligned_cols=16 Identities=25% Similarity=0.796 Sum_probs=11.0
Q ss_pred eecccCcCccccceEE
Q psy12393 77 YKCSKCKRKWMSGNSW 92 (155)
Q Consensus 77 F~Ck~C~~~WsSaNsW 92 (155)
|.|..|++.+.+....
T Consensus 4 ~~C~~C~k~f~~~~~l 19 (30)
T 2lvr_A 4 YVCIHCQRQFADPGAL 19 (30)
Confidence 6788888877655443
No 62
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=24.65 E-value=13 Score=21.54 Aligned_cols=18 Identities=17% Similarity=0.573 Sum_probs=12.4
Q ss_pred eecccCcCccccceEEec
Q psy12393 77 YKCSKCKRKWMSGNSWAN 94 (155)
Q Consensus 77 F~Ck~C~~~WsSaNsWan 94 (155)
|.|..|++.+.+......
T Consensus 3 ~~C~~C~~~f~~~~~l~~ 20 (60)
T 2adr_A 3 FVCEVCTRAFARQEHLKR 20 (60)
T ss_dssp BCCTTTCCCBSCHHHHHH
T ss_pred CcCCCCccccCCHHHHHH
Confidence 678888888776655544
No 63
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=24.52 E-value=13 Score=22.61 Aligned_cols=31 Identities=26% Similarity=0.678 Sum_probs=20.9
Q ss_pred eeecccCcCccccceEEecc-----c---ccccccCccc
Q psy12393 76 EYKCSKCKRKWMSGNSWANM-----G---QECIKCNINV 106 (155)
Q Consensus 76 ~F~Ck~C~~~WsSaNsWan~-----g---Q~C~kC~~~v 106 (155)
.|.|..|++.+.+....... + -.|..|++.+
T Consensus 17 ~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f 55 (74)
T 2lce_A 17 PYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQF 55 (74)
T ss_dssp SBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEE
T ss_pred CeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchh
Confidence 47899999999876655442 2 3577776543
No 64
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=23.68 E-value=28 Score=17.60 Aligned_cols=13 Identities=15% Similarity=0.636 Sum_probs=10.5
Q ss_pred eecccCcCccccc
Q psy12393 77 YKCSKCKRKWMSG 89 (155)
Q Consensus 77 F~Ck~C~~~WsSa 89 (155)
|.|..|++.+.+.
T Consensus 8 ~~C~~C~k~f~~~ 20 (35)
T 1srk_A 8 FVCRICLSAFTTK 20 (35)
T ss_dssp EECSSSCCEESSH
T ss_pred eeCCCCCcccCCH
Confidence 7899999887754
No 65
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.22 E-value=29 Score=17.58 Aligned_cols=15 Identities=27% Similarity=0.580 Sum_probs=11.4
Q ss_pred eeecccCcCccccce
Q psy12393 76 EYKCSKCKRKWMSGN 90 (155)
Q Consensus 76 ~F~Ck~C~~~WsSaN 90 (155)
-|.|..|++.+.+..
T Consensus 9 ~~~C~~C~k~f~~~~ 23 (36)
T 2elt_A 9 PYKCPQCSYASAIKA 23 (36)
T ss_dssp SEECSSSSCEESSHH
T ss_pred CCCCCCCCcccCCHH
Confidence 378999999877543
No 66
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.41 E-value=30 Score=18.51 Aligned_cols=18 Identities=17% Similarity=0.702 Sum_probs=13.8
Q ss_pred eecccCcCccccceEEec
Q psy12393 77 YKCSKCKRKWMSGNSWAN 94 (155)
Q Consensus 77 F~Ck~C~~~WsSaNsWan 94 (155)
|.|..|++.+.+......
T Consensus 13 ~~C~~C~k~f~~~~~L~~ 30 (44)
T 2eof_A 13 YECNECQKAFNTKSNLMV 30 (44)
T ss_dssp EECTTTCCEESCHHHHHH
T ss_pred eECCCCCcccCCHhHHHH
Confidence 889999999887655443
No 67
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=22.18 E-value=30 Score=18.18 Aligned_cols=16 Identities=44% Similarity=0.929 Sum_probs=12.2
Q ss_pred eecccCcCccccceEE
Q psy12393 77 YKCSKCKRKWMSGNSW 92 (155)
Q Consensus 77 F~Ck~C~~~WsSaNsW 92 (155)
|.|..|++.+.+....
T Consensus 7 ~~C~~C~k~f~~~~~L 22 (39)
T 1njq_A 7 YTCSFCKREFRSAQAL 22 (39)
T ss_dssp EECTTTCCEESSHHHH
T ss_pred eECCCCCcccCCHHHH
Confidence 7899999988765443
No 68
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=21.93 E-value=62 Score=25.04 Aligned_cols=44 Identities=20% Similarity=0.470 Sum_probs=29.7
Q ss_pred CCCCceeeeeccCCCcccccCCCCCCCchhhHhhhhhhhcCCCCCCCCCCCCcccceeeeecccCcCccc
Q psy12393 18 QPPSAYLCHLCFVGGHYITDCPLFNMSPFSKYRQLFLFQARPKGEGLTPYQGKKRCFGEYKCSKCKRKWM 87 (155)
Q Consensus 18 ~pp~~y~ch~c~~~ghyi~dcp~~~~~~~~~~r~~~~~~~rp~~~~~TPyQg~kR~fG~F~Ck~C~~~Ws 87 (155)
++.-...|..|....-+. |-++.|.--|+.|- +|.|..|+++|.
T Consensus 133 ~~t~~~~Cp~C~~~~a~~-----------------~q~Q~rsaDE~mt~---------f~~C~~C~~~w~ 176 (178)
T 3po3_S 133 SVTDRFTCGKCKEKKVSY-----------------YQLQTRSAAAPLTT---------FCTCEACGNRWK 176 (178)
T ss_dssp CCBSSSCCSSSCCSCEEC-----------------CCCCCSCTTSCCCC---------CEEETTTCCEEC
T ss_pred CCcCCcCCCCCCCCceEE-----------------EEeecccCCCCCcE---------EEEcCCCCCeec
Confidence 344568899998655542 23455655666664 478999999996
No 69
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=21.74 E-value=28 Score=17.93 Aligned_cols=15 Identities=20% Similarity=0.981 Sum_probs=11.0
Q ss_pred eecccCcCccccceE
Q psy12393 77 YKCSKCKRKWMSGNS 91 (155)
Q Consensus 77 F~Ck~C~~~WsSaNs 91 (155)
|.|..|++.+.+...
T Consensus 3 ~~C~~C~k~F~~~~~ 17 (33)
T 1rim_A 3 FACPECPKRFMRSDH 17 (33)
T ss_dssp CCCSSSCCCCSSHHH
T ss_pred ccCCCCCchhCCHHH
Confidence 678889888876543
No 70
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=21.42 E-value=33 Score=18.19 Aligned_cols=17 Identities=24% Similarity=0.737 Sum_probs=13.2
Q ss_pred eecccCcCccccceEEe
Q psy12393 77 YKCSKCKRKWMSGNSWA 93 (155)
Q Consensus 77 F~Ck~C~~~WsSaNsWa 93 (155)
|.|..|++.+.+.....
T Consensus 11 ~~C~~C~k~f~~~~~L~ 27 (42)
T 2el5_A 11 YECSECGKAFNRKDQLI 27 (42)
T ss_dssp EECSSSCCEESSHHHHH
T ss_pred ccCCCcChhhCCHHHHH
Confidence 78999999988765543
No 71
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.72 E-value=31 Score=18.24 Aligned_cols=18 Identities=22% Similarity=0.684 Sum_probs=13.3
Q ss_pred eecccCcCccccceEEec
Q psy12393 77 YKCSKCKRKWMSGNSWAN 94 (155)
Q Consensus 77 F~Ck~C~~~WsSaNsWan 94 (155)
|.|..|++.+.+......
T Consensus 12 ~~C~~C~k~f~~~~~L~~ 29 (42)
T 2ytb_A 12 YRCDQCGKAFSQKGSLIV 29 (42)
T ss_dssp BCCTTTTCCBSSHHHHHT
T ss_pred eeCCCccchhCCHHHHHH
Confidence 679999999887655443
No 72
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=20.60 E-value=35 Score=28.43 Aligned_cols=41 Identities=24% Similarity=0.506 Sum_probs=29.4
Q ss_pred CceeeeeccCCCcccccCCCCCCCchhhHhhhhhhhcCCCCCCCCCCCCcccceeeeecccCcCccc
Q psy12393 21 SAYLCHLCFVGGHYITDCPLFNMSPFSKYRQLFLFQARPKGEGLTPYQGKKRCFGEYKCSKCKRKWM 87 (155)
Q Consensus 21 ~~y~ch~c~~~ghyi~dcp~~~~~~~~~~r~~~~~~~rp~~~~~TPyQg~kR~fG~F~Ck~C~~~Ws 87 (155)
-.+.|..|....-|+.+ ++.|---|+.|- +|.|..|+++|.
T Consensus 267 ~~~~C~~C~~~~~~~~q-----------------~Q~rsaDe~~t~---------f~~C~~Cg~~w~ 307 (309)
T 1pqv_S 267 DRFTCGKCKEKKVSYYQ-----------------LQTRSADEPLTT---------FCTCEACGNRWK 307 (309)
T ss_pred ccccCCCCCCCeeEEEE-----------------eecccCCCCCcE---------EEEeCCCCCcee
Confidence 36899999876655543 355666676664 478999999995
No 73
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.52 E-value=34 Score=18.40 Aligned_cols=18 Identities=28% Similarity=0.676 Sum_probs=13.5
Q ss_pred eecccCcCccccceEEec
Q psy12393 77 YKCSKCKRKWMSGNSWAN 94 (155)
Q Consensus 77 F~Ck~C~~~WsSaNsWan 94 (155)
|.|..|++.+.+......
T Consensus 13 ~~C~~C~k~f~~~~~L~~ 30 (44)
T 2emb_A 13 YECSKCQATFNLRKHLIQ 30 (44)
T ss_dssp EECTTTCCEESCHHHHHH
T ss_pred eECCCCCCccCCHHHHHH
Confidence 789999999886554443
No 74
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.46 E-value=35 Score=18.53 Aligned_cols=18 Identities=22% Similarity=0.785 Sum_probs=13.8
Q ss_pred eecccCcCccccceEEec
Q psy12393 77 YKCSKCKRKWMSGNSWAN 94 (155)
Q Consensus 77 F~Ck~C~~~WsSaNsWan 94 (155)
|.|..|++.+.+......
T Consensus 13 ~~C~~C~k~F~~~~~L~~ 30 (46)
T 2emi_A 13 YECSECGKAFIQKSTLSM 30 (46)
T ss_dssp EECSSSCCEESSHHHHHH
T ss_pred CCCCCCCcccCCHHHHHH
Confidence 889999999887655443
No 75
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=20.44 E-value=19 Score=22.60 Aligned_cols=30 Identities=17% Similarity=0.608 Sum_probs=19.4
Q ss_pred eecccCcCccccceEEecc-----c---ccccccCccc
Q psy12393 77 YKCSKCKRKWMSGNSWANM-----G---QECIKCNINV 106 (155)
Q Consensus 77 F~Ck~C~~~WsSaNsWan~-----g---Q~C~kC~~~v 106 (155)
|.|..|++.+.+......- + =.|..|++.+
T Consensus 5 y~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F 42 (60)
T 4gzn_C 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCF 42 (60)
T ss_dssp EECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEE
T ss_pred ccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCc
Confidence 7788888888766655541 3 3566666543
No 76
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=20.41 E-value=36 Score=17.97 Aligned_cols=17 Identities=29% Similarity=0.761 Sum_probs=13.0
Q ss_pred eecccCcCccccceEEe
Q psy12393 77 YKCSKCKRKWMSGNSWA 93 (155)
Q Consensus 77 F~Ck~C~~~WsSaNsWa 93 (155)
|.|..|++.+.+.....
T Consensus 12 ~~C~~C~k~f~~~~~l~ 28 (42)
T 2epc_A 12 YLCGQCGKSFTQRGSLA 28 (42)
T ss_dssp EECSSSCCEESSHHHHH
T ss_pred eECCCCCcccCCHHHHH
Confidence 78999999888655443
No 77
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.37 E-value=33 Score=18.29 Aligned_cols=18 Identities=17% Similarity=0.538 Sum_probs=13.4
Q ss_pred eecccCcCccccceEEec
Q psy12393 77 YKCSKCKRKWMSGNSWAN 94 (155)
Q Consensus 77 F~Ck~C~~~WsSaNsWan 94 (155)
|.|..|++.+.+......
T Consensus 12 ~~C~~C~k~f~~~~~L~~ 29 (42)
T 2eos_A 12 YPCEICGTRFRHLQTLKS 29 (42)
T ss_dssp BCCSSSCCCBSSHHHHHH
T ss_pred EECCCCCCccCCHHHHHH
Confidence 679999999887655443
No 78
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.32 E-value=35 Score=17.41 Aligned_cols=13 Identities=15% Similarity=0.677 Sum_probs=10.4
Q ss_pred eecccCcCccccc
Q psy12393 77 YKCSKCKRKWMSG 89 (155)
Q Consensus 77 F~Ck~C~~~WsSa 89 (155)
|.|..|++.+.+.
T Consensus 10 ~~C~~C~k~f~~~ 22 (36)
T 2els_A 10 FTCEYCNKVFKFK 22 (36)
T ss_dssp EECTTTCCEESSH
T ss_pred EECCCCCceeCCH
Confidence 7899999987654
Done!