RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12393
         (155 letters)



>d1cc1s_ e.19.1.1 (S:) Nickel-iron hydrogenase, small subunit
           {Desulfomicrobium baculatum [TaxId: 899]}
          Length = 278

 Score = 24.2 bits (52), Expect = 7.2
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 7/55 (12%)

Query: 69  GKKRCFGEYKC------SKC-KRKWMSGNSWANMGQECIKCNINVYPHKQRPLEK 116
            K  C  E  C      + C KR+W +G +W      CI C    +P  + P   
Sbjct: 222 TKPGCKAELGCKGPSTYADCAKRRWNNGINWCVENAVCIGCVEPDFPDGKSPFYV 276


>d1vqoz1 g.41.8.1 (Z:10-82) Ribosomal protein L37ae {Archaeon
          Haloarcula marismortui [TaxId: 2238]}
          Length = 73

 Score = 23.1 bits (50), Expect = 9.0
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 70 KKRCFGEYKCSKCKRKWMSG 89
           ++  G ++CS C  K+  G
Sbjct: 39 DRQGTGIWQCSYCDYKFTGG 58


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.140    0.479 

Gapped
Lambda     K      H
   0.267   0.0637    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 631,629
Number of extensions: 29240
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 17
Length of query: 155
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,336,656
Effective search space: 102922512
Effective search space used: 102922512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (22.8 bits)