BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12394
(1873 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Y38|A Chain A, Laminin Alpha5 Chain N-Terminal Fragment
Length = 403
Score = 226 bits (577), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 152/268 (56%), Gaps = 50/268 (18%)
Query: 1 MGNSPRPAVWALERSADNG----------------------------------------- 19
NSPRP +W LERS D G
Sbjct: 127 FANSPRPDLWVLERSTDFGHTYQPWQFFASSKRDCLERFGPRTLERITQDDDVICTTEYS 186
Query: 20 ---------ITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQD 70
I +SL++ RP NF S L+++T+ATN+RLR LRT LLGHLM A +D
Sbjct: 187 RIVPLENGEIVVSLVNGRPGALNFSYSPLLRDFTKATNIRLRFLRTNTLLGHLMGKALRD 246
Query: 71 PTTTRRYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGY 130
PT TRRY+YSIKDISIGGRC C+GHADVCD DP DP+ C CQHNTCG +C+ CCPG+
Sbjct: 247 PTVTRRYYYSIKDISIGGRCVCHGHADVCDAKDPLDPFRLQCACQHNTCGGSCDRCCPGF 306
Query: 131 EQKAWRQSQSNKPFSCEPCNCHGHADKCVYDPMVDEKRLSVDIQGNYEGGGVCQECRDNT 190
Q+ W+ + ++ C+ CNCHGHA C YDP VD + S + Y+GGGVC +C+ +T
Sbjct: 307 NQQPWKPATTDSANECQSCNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVCLDCQHHT 366
Query: 191 EGINCHQRVAGYYRPYGKHLNETDVCQP 218
GINC + + G++R + L+ VC+P
Sbjct: 367 TGINCERCLPGFFRAPDQPLDSPHVCRP 394
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 56/107 (52%), Gaps = 19/107 (17%)
Query: 1719 QCPCKENYAGDHCDTCA-------------------QACNCHGHADKCVYDPMVDEKRLS 1759
QC C+ N G CD C Q+CNCHGHA C YDP VD + S
Sbjct: 287 QCACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEVDRREAS 346
Query: 1760 VDIQGNYEGGGVCQECRDNTEGINCHQCVAGYYRPYGKHLNETDVCQ 1806
+ Y+GGGVC +C+ +T GINC +C+ G++R + L+ VC+
Sbjct: 347 QNQDNVYQGGGVCLDCQHHTTGINCERCLPGFFRAPDQPLDSPHVCR 393
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 45/129 (34%), Gaps = 34/129 (26%)
Query: 592 YYGYPDCKLCGCSAVGSSSTACDVSG-------KCPCLVNFGGKTCSQCSPGFYQYP--- 641
YY D + G + CD +C C N G +C +C PGF Q P
Sbjct: 254 YYSIKDISIGGRCVCHGHADVCDAKDPLDPFRLQCACQHNTCGGSCDRCCPGFNQQPWKP 313
Query: 642 -------QCKACNCDSHG----------NIGVSCDDDGKCQ-------CEKNFGGDRCER 677
+C++CNC H S + D Q C+ + G CER
Sbjct: 314 ATTDSANECQSCNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVCLDCQHHTTGINCER 373
Query: 678 CKEGLYNFP 686
C G + P
Sbjct: 374 CLPGFFRAP 382
>pdb|4AQS|A Chain A, Laminin Beta1 Ln-Le1-4 Structure
Length = 525
Score = 141 bits (356), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 106/393 (26%), Positives = 172/393 (43%), Gaps = 65/393 (16%)
Query: 12 LERSADNGITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDP 71
+E S + + LD +++ + S R+Q + TN+R++ ++ L +L+ D
Sbjct: 180 IEPSTEGEVIFRALDPAFKIEDPY-SPRIQNLLKITNLRIKFVKLHTLGDNLL---DSRM 235
Query: 72 TTTRRYFYSIKDISIGGRCRCNGHADVCDILD-----PEDPYHRICRCQHNTCGHNCEVC 126
+Y+Y++ D+ + G C C GHA C +D E H C C+HNT G NCE+C
Sbjct: 236 EIREKYYYAVYDMVVRGNCFCYGHASECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELC 295
Query: 127 CPGYEQKAWRQSQSNKPFSCEPCNCHGHADKCVYDPMVDEKRLSVDIQGNYEGGGVCQEC 186
Y WR ++ +C+ CNC+ H+ C +D ++V + GGVC C
Sbjct: 296 MDFYHDLPWRPAEGRNSNACKKCNCNEHSSSCHFD-------MAVFLATGNVSGGVCDNC 348
Query: 187 RDNTEGINCHQRVAGYYRPYGKHLNETDVCQPCQCAFHYATGNCAEGTGKCECRPEYTKP 246
+ NT G NC Q Y++ + + + ++C+PC C +E G C+
Sbjct: 349 QHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCTC-----DPAGSENGGICD-------- 395
Query: 247 DCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFP 306
G DF +G QC CK + G+ CD C +G+Y+
Sbjct: 396 -----------------------GYTDFSVGLIAG-QCRCKLHVEGERCDVCKEGFYDLS 431
Query: 307 T-----CSPCECNAVGSL--SDLCEVDSGNCTCRNNFAGRTCDSCADGYYNYPR----CT 355
C C CN +G++ + C+ ++G C C+ G+ CD C ++ C
Sbjct: 432 AEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCR 491
Query: 356 SCQCAFHYATGN-CAEGTGKCECRPEYTKPDCN 387
C C A N C+E +G+C C P CN
Sbjct: 492 PCDCDLGGALNNSCSEDSGQCSCLPHMIGRQCN 524
Score = 107 bits (267), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 112/237 (47%), Gaps = 46/237 (19%)
Query: 662 GKCQCEKNFGGDRCERCKEGLYNFP----------ICEACNCDSH--------------G 697
G C C N G CE C + ++ P C+ CNC+ H G
Sbjct: 279 GHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEHSSSCHFDMAVFLATG 338
Query: 698 NI-GVSCDDDGKCQCEKNFGGDRCERCKEGLYNFP--------ICEECNCNPEGVLKTFA 748
N+ G CD+ C+ N G CE+CK + P +CE C C+P G
Sbjct: 339 NVSGGVCDN-----CQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGI 393
Query: 749 GCG------SLPAGELCECKPKVQGRICDECRPLYWNLKASNPDGCEDCDCYTLGTIGGI 802
G L AG+ C CK V+G CD C+ +++L A +P GC+ C C LGTI G
Sbjct: 394 CDGYTDFSVGLIAGQ-CRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGG 452
Query: 803 KNCNPKSGQCVCKATAMNRKCDACMDGTYALQDNNLFGCTECACDIGGSINNLCNKD 859
C+ ++G C CK ++CD C+ + L N+L GC C CD+GG++NN C++D
Sbjct: 453 NPCDSETGYCYCKRLVTGQRCDQCLPQHWGLS-NDLDGCRPCDCDLGGALNNSCSED 508
Score = 100 bits (250), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 136/301 (45%), Gaps = 38/301 (12%)
Query: 1306 DLFDGSCSCKENIVGRTCDHCVEGHWSFPYCVPCEC-DLRGTTIDICNQGTAECYCKKNV 1364
+L D +E D V G+ F Y EC + G ++ C C+ N
Sbjct: 229 NLLDSRMEIREKYYYAVYDMVVRGN-CFCYGHASECAPVDGVNEEVEGMVHGHCMCRHNT 287
Query: 1365 YGAACDVCKEGTFDI-----QADNVDGCTRCFCFGKTTKCSSSNLYRSQLVYCKPCECSG 1419
G C++C + D+ + N + C +C C ++ C + V+ +G
Sbjct: 288 KGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEHSSSC-----HFDMAVFLA----TG 338
Query: 1420 NINRTDPGSCDSVTGECTGCLFNSAGDSCQYCAPGYYGN-AVSLKN---CVKCNCNPEGV 1475
N++ G C C N+ G +C+ C P Y+ + +++ C C C+P G
Sbjct: 339 NVS----------GGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGS 388
Query: 1476 LKTFAGCG------SLPAGELCECKPKVQGRICDECRPLYWNLKASNPDGCEDCDCYTLG 1529
G L AG+ C CK V+G CD C+ +++L A +P GC+ C C LG
Sbjct: 389 ENGGICDGYTDFSVGLIAGQ-CRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLG 447
Query: 1530 TIGGIKNCNPKSGQCVCKATAMNRKCDACVDGTYALQDNNLFGCTECACDIGGSINNLCN 1589
TI G C+ ++G C CK ++CD C+ + L N+L GC C CD+GG++NN C+
Sbjct: 448 TIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLS-NDLDGCRPCDCDLGGALNNSCS 506
Query: 1590 K 1590
+
Sbjct: 507 E 507
Score = 94.0 bits (232), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 113/258 (43%), Gaps = 58/258 (22%)
Query: 615 VSGKCPCLVNFGGKTCSQCSPGFYQYPQ----------CKACNCDSH------------- 651
V G C C N G C C ++ P CK CNC+ H
Sbjct: 277 VHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEHSSSCHFDMAVFLA 336
Query: 652 -GNI-GVSCDDDGKCQCEKNFGGDRCERCKEGLYNFP--------ICEACNCDSHGNI-G 700
GN+ G CD+ C+ N G CE+CK + P +CE C CD G+ G
Sbjct: 337 TGNVSGGVCDN-----CQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENG 391
Query: 701 VSCDD---------DGKCQCEKNFGGDRCERCKEGLYNFPI-----CEECNCNPEGVLKT 746
CD G+C+C+ + G+RC+ CKEG Y+ C+ C CNP G +
Sbjct: 392 GICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPG 451
Query: 747 FAGCGSLPAGELCECKPKVQGRICDECRPLYWNLKASNPDGCEDCDCYTLGTIGGIKNCN 806
C S C CK V G+ CD+C P +W L +++ DGC CDC G + +C+
Sbjct: 452 GNPCDSETG--YCYCKRLVTGQRCDQCLPQHWGL-SNDLDGCRPCDCDLGGALN--NSCS 506
Query: 807 PKSGQCVCKATAMNRKCD 824
SGQC C + R+C+
Sbjct: 507 EDSGQCSCLPHMIGRQCN 524
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 86/184 (46%), Gaps = 31/184 (16%)
Query: 1217 GGQC-QCKPNVIGRRCEMCATGYYGFPD--------CHPCNCPFTA-----VCDSYT--- 1259
GG C C+ N +GR CE C Y+ P+ C PC C +CD YT
Sbjct: 342 GGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFS 401
Query: 1260 -----GECICAARVIGKKCDQCEPNTF---GYDPIIGCEECNCHPHG-VNGTQQCDLFDG 1310
G+C C V G++CD C+ + DP GC+ C C+P G + G CD G
Sbjct: 402 VGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPY-GCKSCACNPLGTIPGGNPCDSETG 460
Query: 1311 SCSCKENIVGRTCDHCVEGHWSFPY----CVPCECDLRGTTIDICNQGTAECYCKKNVYG 1366
C CK + G+ CD C+ HW C PC+CDL G + C++ + +C C ++ G
Sbjct: 461 YCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHMIG 520
Query: 1367 AACD 1370
C+
Sbjct: 521 RQCN 524
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 107/268 (39%), Gaps = 37/268 (13%)
Query: 1307 LFDGSCSCKENIVGRTCDHCVEGHWSFPY----------CVPCECDLRGTTIDICNQGTA 1356
+ G C C+ N G C+ C++ + P+ C C C+ ++ C+ A
Sbjct: 276 MVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEHSSS---CHFDMA 332
Query: 1357 ECYCKKNVYGAACDVCKEGTFDIQADNVDGCTRCFCFGKTTKCSSSNLYRSQLVYCKPCE 1416
NV G CD C+ T N + C + NL C+PC
Sbjct: 333 VFLATGNVSGGVCDNCQHNTM---GRNCEQCKPFYFQHPERDIRDPNL-------CEPCT 382
Query: 1417 CSGNINRTDPGSCDSVTGECTG-------CLFNSAGDSCQYCAPGYYG-NAVSLKNCVKC 1468
C + G CD T G C + G+ C C G+Y +A C C
Sbjct: 383 CDP-AGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSC 441
Query: 1469 NCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDECRPLYWNLKASNPDGCEDCDCYTL 1528
CNP G + C S C CK V G+ CD+C P +W L +++ DGC CDC
Sbjct: 442 ACNPLGTIPGGNPCDSETG--YCYCKRLVTGQRCDQCLPQHWGL-SNDLDGCRPCDCDLG 498
Query: 1529 GTIGGIKNCNPKSGQCVCKATAMNRKCD 1556
G + +C+ SGQC C + R+C+
Sbjct: 499 GALN--NSCSEDSGQCSCLPHMIGRQCN 524
Score = 77.8 bits (190), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 95/337 (28%), Positives = 139/337 (41%), Gaps = 67/337 (19%)
Query: 494 EITLPDVPVIRVLMATITTHAVLFVIVTSEVQRLVSVIKPMDHVYVRKDTRALAVTNARQ 553
+I P P I+ L+ IT + FV + + L+ + Y A+ R
Sbjct: 198 KIEDPYSPRIQNLLK-ITNLRIKFVKLHTLGDNLLDSRMEIREKYYY----AVYDMVVRG 252
Query: 554 VCNCDIRGTEAGICDKTN--------GSCLCKEGYTGARCDQCKAGYYGYP--------- 596
C C +E D N G C+C+ G C+ C Y+ P
Sbjct: 253 NCFCYGHASECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNS 312
Query: 597 -DCKLCGCSAVGSS---------STACDVSGKCP-CLVNFGGKTCSQCSPGFYQYPQ--- 642
CK C C+ SS +T G C C N G+ C QC P ++Q+P+
Sbjct: 313 NACKKCNCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDI 372
Query: 643 -----CKACNCDSHGNI-GVSCDD---------DGKCQCEKNFGGDRCERCKEGLYNFPI 687
C+ C CD G+ G CD G+C+C+ + G+RC+ CKEG Y+
Sbjct: 373 RDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSA 432
Query: 688 -----CEACNCDSHGNI--GVSCDDD-GKCQCEKNFGGDRCERC---KEGLYN-FPICEE 735
C++C C+ G I G CD + G C C++ G RC++C GL N C
Sbjct: 433 EDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRP 492
Query: 736 CNCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDE 772
C+C+ G L S +G+ C C P + GR C+E
Sbjct: 493 CDCDLGGALNNSC---SEDSGQ-CSCLPHMIGRQCNE 525
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 113/279 (40%), Gaps = 66/279 (23%)
Query: 1260 GECICAARVIGKKCDQCEP--NTFGYDPIIG-----CEECNCHPHGVNGTQQCDLF---- 1308
G C+C G C+ C + + P G C++CNC+ H + +F
Sbjct: 279 GHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEHSSSCHFDMAVFLATG 338
Query: 1309 ---DGSC-SCKENIVGRTCDHCVEGHWSFP--------YCVPCECDLRGT-TIDICNQGT 1355
G C +C+ N +GR C+ C ++ P C PC CD G+ IC+ T
Sbjct: 339 NVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYT 398
Query: 1356 --------AECYCKKNVYGAACDVCKEGTFDIQADNVDGCTRCFCFGKTTKCSSSNLYRS 1407
+C CK +V G CDVCKEG +D+ A++ GC C C
Sbjct: 399 DFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCAC--------------- 443
Query: 1408 QLVYCKPCECSGNINRTDPGS--CDSVTGECTGCLFNSAGDSCQYCAPGYYGNAVSLKNC 1465
N T PG CDS TG C C G C C P ++G + L C
Sbjct: 444 ------------NPLGTIPGGNPCDSETGYCY-CKRLVTGQRCDQCLPQHWGLSNDLDGC 490
Query: 1466 VKCNCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDE 1504
C+C+ G L S +G+ C C P + GR C+E
Sbjct: 491 RPCDCDLGGALNNSC---SEDSGQ-CSCLPHMIGRQCNE 525
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 68/146 (46%), Gaps = 22/146 (15%)
Query: 1200 PCQCDIDGSKS---------FECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNC- 1249
PC CD GS++ F GQC+CK +V G RC++C G+Y P C
Sbjct: 380 PCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCK 439
Query: 1250 -----PFTAV-----CDSYTGECICAARVIGKKCDQCEPNTFGY-DPIIGCEECNCHPHG 1298
P + CDS TG C C V G++CDQC P +G + + GC C+C G
Sbjct: 440 SCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGG 499
Query: 1299 VNGTQQCDLFDGSCSCKENIVGRTCD 1324
C G CSC +++GR C+
Sbjct: 500 AL-NNSCSEDSGQCSCLPHMIGRQCN 524
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 122/316 (38%), Gaps = 75/316 (23%)
Query: 149 CNCHGHADKCVYDPMVDEKRLSVDIQGNYEGGGVCQECRDNTEGINCHQRVAGYYRPYGK 208
C C+GHA +C V+E +++G G +C R NT+G+NC
Sbjct: 254 CFCYGHASECAPVDGVNE-----EVEGMVHGHCMC---RHNTKGLNC------------- 292
Query: 209 HLNETDVCQPCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHM 268
+ C +H AEG C+ K +CN CH
Sbjct: 293 --------ELCMDFYHDLPWRPAEGRNSNACK----KCNCNE-----------HSSSCHF 329
Query: 269 NGTLDFYCEPASGQQCP-CKENYAGDHCDTCAQGYYNFP--------TCSPCECNAVGSL 319
+ + SG C C+ N G +C+ C Y+ P C PC C+ GS
Sbjct: 330 DMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGSE 389
Query: 320 SD-LCE--------VDSGNCTCRNNFAGRTCDSCADGYYNYPR-----CTSCQC--AFHY 363
+ +C+ + +G C C+ + G CD C +G+Y+ C SC C
Sbjct: 390 NGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTI 449
Query: 364 ATGN-CAEGTGKCECRPEYTKPDCNSCAFGYFGYPN----CEPCKCHMNGTLDFYCEPAS 418
GN C TG C C+ T C+ C ++G N C PC C + G L+ C S
Sbjct: 450 PGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDS 509
Query: 419 GQQCPCKENYAGDHCD 434
G QC C + G C+
Sbjct: 510 G-QCSCLPHMIGRQCN 524
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 69/171 (40%), Gaps = 41/171 (23%)
Query: 312 ECNAVGSLSDLCE-VDSGNCTCRNNFAGRTCDSCADGYYNYP----------RCTSCQCA 360
EC V +++ E + G+C CR+N G C+ C D Y++ P C C C
Sbjct: 262 ECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCN 321
Query: 361 FH-----------YATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPN--------CEP 401
H ATGN + G C+ +C C YF +P CEP
Sbjct: 322 EHSSSCHFDMAVFLATGNVSGGVCD-NCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEP 380
Query: 402 CKCHMNGT---------LDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNF 443
C C G+ DF +G QC CK + G+ CD C +G+Y+
Sbjct: 381 CTCDPAGSENGGICDGYTDFSVGLIAG-QCRCKLHVEGERCDVCKEGFYDL 430
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 87/213 (40%), Gaps = 36/213 (16%)
Query: 1630 FDMDVLIQNGQFYEAQLPDCQHNTLGDQCEQCQPGYHGNATQGTMADCLICACPLPITSN 1689
FDM V + G +CQHNT+G CEQC+P Y + + + D +C P T +
Sbjct: 329 FDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPER-DIRDPNLCE---PCTCD 384
Query: 1690 NFASGCDVSEDGCHMNGTLNFYCEPTSGQQCPCKENYAGDHCDTCAQACNCHGHADKCVY 1749
SE+G +G +F +G QC CK + G+ CD C + G D
Sbjct: 385 PAG-----SENGGICDGYTDFSVGLIAG-QCRCKLHVEGERCDVCKE-----GFYDLSAE 433
Query: 1750 DPMVDEKRLSVDIQGNYEGGGVCQE------CRDNTEGINCHQCVAGYY---------RP 1794
DP K + + G GG C C+ G C QC+ ++ RP
Sbjct: 434 DPY-GCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRP 492
Query: 1795 ----YGKHLNET-DVCQRQCLCQPRVTGQTCNQ 1822
G LN + QC C P + G+ CN+
Sbjct: 493 CDCDLGGALNNSCSEDSGQCSCLPHMIGRQCNE 525
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 27/114 (23%)
Query: 1719 QCPCKENYAGDHCDTCA-------------------QACNCHGHADKCVYDPMVDEKRLS 1759
C C+ N G +C+ C + CNC+ H+ C +D ++
Sbjct: 280 HCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEHSSSCHFD-------MA 332
Query: 1760 VDIQGNYEGGGVCQECRDNTEGINCHQCVAGYYRPYGKHLNETDVCQRQCLCQP 1813
V + GGVC C+ NT G NC QC Y++ + + + ++C+ C C P
Sbjct: 333 VFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCE-PCTCDP 385
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
Query: 1173 FYLDNSTSEFCKKATFSMTISFLHEALPCQCDIDGS--KSFECEQFGGQCQCKPNVIGRR 1230
+++ + CK+ + ++ + C C+ G+ C+ G C CK V G+R
Sbjct: 413 LHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQR 472
Query: 1231 CEMCATGYYGFPD----CHPCNCPFTAV----CDSYTGECICAARVIGKKCDQ 1275
C+ C ++G + C PC+C C +G+C C +IG++C++
Sbjct: 473 CDQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHMIGRQCNE 525
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 75/210 (35%), Gaps = 41/210 (19%)
Query: 1649 CQHNTLGDQCEQCQPGYHGNATQGTMADCLICACPLPITSNNFASGCDVSE--DGCHMNG 1706
C+HNT G CE C YH + P ++N C+ +E CH +
Sbjct: 283 CRHNTKGLNCELCMDFYHDLPWR-----------PAEGRNSNACKKCNCNEHSSSCHFDM 331
Query: 1707 TLNFYCEPTSGQQCP-CKENYAGDHCDTCAQACNCHGHAD--------KCVYDPMVDEKR 1757
+ SG C C+ N G +C+ C H D C DP E
Sbjct: 332 AVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENG 391
Query: 1758 LSVDIQGNYEGGGVCQECR--DNTEGINCHQCVAGYY-----RPYG------------KH 1798
D ++ G + +CR + EG C C G+Y PYG
Sbjct: 392 GICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPG 451
Query: 1799 LNETDVCQRQCLCQPRVTGQTCNQPLQAHY 1828
N D C C+ VTGQ C+Q L H+
Sbjct: 452 GNPCDSETGYCYCKRLVTGQRCDQCLPQHW 481
>pdb|4AQT|A Chain A, Laminin Gamma1 Ln-Le1-2 Structure
Length = 375
Score = 128 bits (321), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 106/199 (53%), Gaps = 21/199 (10%)
Query: 20 ITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFY 79
+ S L+ RPS NF NS LQEW AT++R+ L R + + +P + Y+Y
Sbjct: 189 VAFSTLEGRPSAYNFDNSPVLQEWVTATDIRVTLNRLNTFGDEVFN----EPKVLKSYYY 244
Query: 80 SIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQ 139
+I D ++GGRC+CNGHA C + + D +C C+HNT G +CE C P + + WR++
Sbjct: 245 AISDFAVGGRCKCNGHASEC-VKNEFDKL--MCNCKHNTYGVDCEKCLPFFNDRPWRRAT 301
Query: 140 SNKPFSCEPCNCHGHADKCVYDPMVDEKRLSVDIQGNYEGGGVCQECRDNTEGINCHQRV 199
+ C PC+C+G + +C +DP ++ + GG C CRDNT+G C +
Sbjct: 302 AESASECLPCDCNGRSQECYFDP---------ELYRSTGHGGHCTNCRDNTDGAKCERCR 352
Query: 200 AGYYRPYGKHLNETDVCQP 218
++R L T+ C P
Sbjct: 353 ENFFR-----LGNTEACSP 366
Score = 38.5 bits (88), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 14/68 (20%)
Query: 1738 CNCHGHADKCVYDPMVDEKRLSVDIQGNYEGGGVCQECRDNTEGINCHQCVAGYYRPYGK 1797
C+C+G + +C +DP ++ + GG C CRDNT+G C +C ++R
Sbjct: 311 CDCNGRSQECYFDP---------ELYRSTGHGGHCTNCRDNTDGAKCERCRENFFR---- 357
Query: 1798 HLNETDVC 1805
L T+ C
Sbjct: 358 -LGNTEAC 364
Score = 30.8 bits (68), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 18/92 (19%)
Query: 619 CPCLVNFGGKTCSQCSPGFYQYP----------QCKACNCDSHGN-------IGVSCDDD 661
C C N G C +C P F P +C C+C+ + S
Sbjct: 274 CNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTGHG 333
Query: 662 GKC-QCEKNFGGDRCERCKEGLYNFPICEACN 692
G C C N G +CERC+E + EAC+
Sbjct: 334 GHCTNCRDNTDGAKCERCRENFFRLGNTEACS 365
>pdb|1KLO|A Chain A, Crystal Structure Of Three Consecutive Laminin-Type
Epidermal Growth Factor-Like (Le) Modules Of Laminin
Gamma1 Chain Harboring The Nidogen Binding Site
Length = 162
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 66/116 (56%), Gaps = 7/116 (6%)
Query: 1409 LVYCKPCECSGNINRTDPGSCDSVTGECTGCLFNSAGDSCQYCAPGYYGNAVS---LKNC 1465
+ C+PC+C+ NI+ G+C+ +TGEC C++N+AG C C G++GN ++ C
Sbjct: 50 VRLCRPCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKC 109
Query: 1466 VKCNCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDECRPLYWNLKASNPDGCE 1521
C CNP G ++ + C P C+C P V GR C C P Y+NL++ GCE
Sbjct: 110 KACACNPYGTVQQQSSCN--PVTGQCQCLPHVSGRDCGTCDPGYYNLQSG--QGCE 161
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 61/137 (44%), Gaps = 7/137 (5%)
Query: 1436 CTGCLFNSAGDSCQYCAPGYYGNAVS----LKNCVKCNCNPEGVLKTFAGCGSLPAGELC 1491
CT C +AG C+ C GY+G+ + ++ C C CN C L GE
Sbjct: 20 CTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRL-TGECL 78
Query: 1492 ECKPKVQGRICDECRP-LYWNLKASNP-DGCEDCDCYTLGTIGGIKNCNPKSGQCVCKAT 1549
+C G CD C+ + N A NP D C+ C C GT+ +CNP +GQC C
Sbjct: 79 KCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPH 138
Query: 1550 AMNRKCDACVDGTYALQ 1566
R C C G Y LQ
Sbjct: 139 VSGRDCGTCDPGYYNLQ 155
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 55/135 (40%), Gaps = 11/135 (8%)
Query: 710 QCEKNFGGDRCERCKEGLYNFPI--------CEECNCNPEGVLKTFAGCGSLPAGELCEC 761
C G RCE C +G + P+ C C CN C L GE +C
Sbjct: 22 HCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRL-TGECLKC 80
Query: 762 KPKVQGRICDECRP-LYWNLKASNP-DGCEDCDCYTLGTIGGIKNCNPKSGQCVCKATAM 819
G CD C+ + N A NP D C+ C C GT+ +CNP +GQC C
Sbjct: 81 IYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPHVS 140
Query: 820 NRKCDACMDGTYALQ 834
R C C G Y LQ
Sbjct: 141 GRDCGTCDPGYYNLQ 155
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 59/133 (44%), Gaps = 20/133 (15%)
Query: 1221 QCKPNVIGRRCEMCATGYYGFP--------DCHPCNC------PFTAVCDSYTGECI-CA 1265
C G+RCE+C GY+G P C PC C C+ TGEC+ C
Sbjct: 22 HCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKCI 81
Query: 1266 ARVIGKKCDQCEPNTFGY----DPIIGCEECNCHPHG-VNGTQQCDLFDGSCSCKENIVG 1320
G CD+C+ FG +P C+ C C+P+G V C+ G C C ++ G
Sbjct: 82 YNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPHVSG 141
Query: 1321 RTCDHCVEGHWSF 1333
R C C G+++
Sbjct: 142 RDCGTCDPGYYNL 154
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 60/133 (45%), Gaps = 22/133 (16%)
Query: 332 CRNNFAGRTCDSCADGYYNYPR--------CTSCQCAFHY---ATGNCAEGTGKC-ECRP 379
C AG+ C+ C DGY+ P C CQC + A GNC TG+C +C
Sbjct: 23 CPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKCIY 82
Query: 380 EYTKPDCNSCAFGYFGYP-------NCEPCKCHMNGTLD--FYCEPASGQQCPCKENYAG 430
C+ C G+FG P C+ C C+ GT+ C P +GQ C C + +G
Sbjct: 83 NTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQ-CQCLPHVSG 141
Query: 431 DHCDTCAQGYYNF 443
C TC GYYN
Sbjct: 142 RDCGTCDPGYYNL 154
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 11/103 (10%)
Query: 555 CNCDIRGTEAGICDKTNGSCL-CKEGYTGARCDQCKAGYYGYP-------DCKLCGCSAV 606
CN +I G C++ G CL C G CD+CK G++G P CK C C+
Sbjct: 58 CNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPY 117
Query: 607 GS---SSTACDVSGKCPCLVNFGGKTCSQCSPGFYQYPQCKAC 646
G+ S+ V+G+C CL + G+ C C PG+Y + C
Sbjct: 118 GTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQSGQGC 160
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 55/122 (45%), Gaps = 19/122 (15%)
Query: 248 CNSCAFGYFGYPN--------CEPCKCHMNGTLDFY--CEPASGQQCPCKENYAGDHCDT 297
C C GYFG P C PC+C+ N + C +G+ C N AG +CD
Sbjct: 32 CELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDR 91
Query: 298 CAQGYYNFP-------TCSPCECNAVGSLSDL--CEVDSGNCTCRNNFAGRTCDSCADGY 348
C +G++ P C C CN G++ C +G C C + +GR C +C GY
Sbjct: 92 CKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGY 151
Query: 349 YN 350
YN
Sbjct: 152 YN 153
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 60/134 (44%), Gaps = 29/134 (21%)
Query: 286 CKENYAGDHCDTCAQGYYNFPT--------CSPCECN------AVGSLSDLCEVDSGNC- 330
C AG C+ C GY+ P C PC+CN AVG+ + L +G C
Sbjct: 23 CPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRL----TGECL 78
Query: 331 TCRNNFAGRTCDSCADGYYNYP-------RCTSCQCAFHYAT---GNCAEGTGKCECRPE 380
C N AG CD C +G++ P +C +C C + +C TG+C+C P
Sbjct: 79 KCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPH 138
Query: 381 YTKPDCNSCAFGYF 394
+ DC +C GY+
Sbjct: 139 VSGRDCGTCDPGYY 152
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 58/142 (40%), Gaps = 18/142 (12%)
Query: 1264 CAARVIGKKCDQCEPNTFG-----YDPIIGCEECNCHPH-GVNGTQQCDLFDGSC-SCKE 1316
C GK+C+ C+ FG P+ C C C+ + N C+ G C C
Sbjct: 23 CPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKCIY 82
Query: 1317 NIVGRTCDHCVEGHWSFPY-------CVPCECDLRGTTI--DICNQGTAECYCKKNVYGA 1367
N G CD C EG + P C C C+ GT CN T +C C +V G
Sbjct: 83 NTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPHVSGR 142
Query: 1368 ACDVCKEGTFDIQADNVDGCTR 1389
C C G +++Q+ GC R
Sbjct: 143 DCGTCDPGYYNLQSG--QGCER 162
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 65/141 (46%), Gaps = 28/141 (19%)
Query: 576 CKEGYTGARCDQCKAGYYGYPD--------CKLCGCS------AVGSSSTACDVSGKC-P 620
C G G RC+ C GY+G P C+ C C+ AVG+ + ++G+C
Sbjct: 23 CPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNR---LTGECLK 79
Query: 621 CLVNFGGKTCSQCSPGFYQYP-------QCKACNCDSHGNIG--VSCDD-DGKCQCEKNF 670
C+ N G C +C GF+ P +CKAC C+ +G + SC+ G+CQC +
Sbjct: 80 CIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPHV 139
Query: 671 GGDRCERCKEGLYNFPICEAC 691
G C C G YN + C
Sbjct: 140 SGRDCGTCDPGYYNLQSGQGC 160
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 54/130 (41%), Gaps = 19/130 (14%)
Query: 1181 EFCKKATFSMTISF---LHEALPCQCD--IDGSKSFECEQFGGQC-QCKPNVIGRRCEMC 1234
E C F + + PCQC+ ID + C + G+C +C N G C+ C
Sbjct: 33 ELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRC 92
Query: 1235 ATGYYGFP-------DCHPCNC-PFTAV-----CDSYTGECICAARVIGKKCDQCEPNTF 1281
G++G P C C C P+ V C+ TG+C C V G+ C C+P +
Sbjct: 93 KEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYY 152
Query: 1282 GYDPIIGCEE 1291
GCE
Sbjct: 153 NLQSGQGCER 162
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 58/132 (43%), Gaps = 22/132 (16%)
Query: 621 CLVNFGGKTCSQCSPGFYQYPQ--------CKACNCDSH---GNIGVSCDDDGKC-QCEK 668
C GK C C G++ P C+ C C+ + +G G+C +C
Sbjct: 23 CPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKCIY 82
Query: 669 NFGGDRCERCKEGLYNFPI-------CEACNCDSHGNIG--VSCDD-DGKCQCEKNFGGD 718
N G C+RCKEG + P+ C+AC C+ +G + SC+ G+CQC + G
Sbjct: 83 NTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPHVSGR 142
Query: 719 RCERCKEGLYNF 730
C C G YN
Sbjct: 143 DCGTCDPGYYNL 154
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 63/149 (42%), Gaps = 25/149 (16%)
Query: 114 CQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFS-CEPCNCHGHADKCVYDPMVDEKRLSVD 172
C T G CE+C GY SN P C PC C+ + D + + + RL+
Sbjct: 23 CPTGTAGKRCELCDDGYFGDPL---GSNGPVRLCRPCQCNDNIDP---NAVGNCNRLT-- 74
Query: 173 IQGNYEGGGVCQECRDNTEGINCHQRVAGYYRPYGKHL--NETDVCQPCQCAFHYAT--- 227
G C +C NT G C + G++ G L N D C+ C C +
Sbjct: 75 --------GECLKCIYNTAGFYCDRCKEGFF---GNPLAPNPADKCKACACNPYGTVQQQ 123
Query: 228 GNCAEGTGKCECRPEYTKPDCNSCAFGYF 256
+C TG+C+C P + DC +C GY+
Sbjct: 124 SSCNPVTGQCQCLPHVSGRDCGTCDPGYY 152
>pdb|1NPE|B Chain B, Crystal Structure Of Nidogen/laminin Complex
Length = 164
Score = 77.8 bits (190), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 66/116 (56%), Gaps = 7/116 (6%)
Query: 1409 LVYCKPCECSGNINRTDPGSCDSVTGECTGCLFNSAGDSCQYCAPGYYGNAVS---LKNC 1465
+ C+PC+C+ NI+ G+C+ +TGEC C++N+AG C C G++GN ++ C
Sbjct: 52 VRLCRPCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKC 111
Query: 1466 VKCNCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDECRPLYWNLKASNPDGCE 1521
C CNP G ++ + C P C+C P V GR C C P Y+NL++ GCE
Sbjct: 112 KACACNPYGTVQQQSSCN--PVTGQCQCLPHVSGRDCGTCDPGYYNLQSG--QGCE 163
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 61/137 (44%), Gaps = 7/137 (5%)
Query: 1436 CTGCLFNSAGDSCQYCAPGYYGNAVS----LKNCVKCNCNPEGVLKTFAGCGSLPAGELC 1491
CT C +AG C+ C GY+G+ + ++ C C CN C L GE
Sbjct: 22 CTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRL-TGECL 80
Query: 1492 ECKPKVQGRICDECRP-LYWNLKASNP-DGCEDCDCYTLGTIGGIKNCNPKSGQCVCKAT 1549
+C G CD C+ + N A NP D C+ C C GT+ +CNP +GQC C
Sbjct: 81 KCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPH 140
Query: 1550 AMNRKCDACVDGTYALQ 1566
R C C G Y LQ
Sbjct: 141 VSGRDCGTCDPGYYNLQ 157
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 55/135 (40%), Gaps = 11/135 (8%)
Query: 710 QCEKNFGGDRCERCKEGLYNFPI--------CEECNCNPEGVLKTFAGCGSLPAGELCEC 761
C G RCE C +G + P+ C C CN C L GE +C
Sbjct: 24 HCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRL-TGECLKC 82
Query: 762 KPKVQGRICDECRP-LYWNLKASNP-DGCEDCDCYTLGTIGGIKNCNPKSGQCVCKATAM 819
G CD C+ + N A NP D C+ C C GT+ +CNP +GQC C
Sbjct: 83 IYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPHVS 142
Query: 820 NRKCDACMDGTYALQ 834
R C C G Y LQ
Sbjct: 143 GRDCGTCDPGYYNLQ 157
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 59/133 (44%), Gaps = 20/133 (15%)
Query: 1221 QCKPNVIGRRCEMCATGYYGFP--------DCHPCNC------PFTAVCDSYTGECI-CA 1265
C G+RCE+C GY+G P C PC C C+ TGEC+ C
Sbjct: 24 HCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKCI 83
Query: 1266 ARVIGKKCDQCEPNTFGY----DPIIGCEECNCHPHG-VNGTQQCDLFDGSCSCKENIVG 1320
G CD+C+ FG +P C+ C C+P+G V C+ G C C ++ G
Sbjct: 84 YNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPHVSG 143
Query: 1321 RTCDHCVEGHWSF 1333
R C C G+++
Sbjct: 144 RDCGTCDPGYYNL 156
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 69/156 (44%), Gaps = 23/156 (14%)
Query: 310 PCECNAVGSLSDLCEVDSGNCT-CRNNFAGRTCDSCADGYYNYPR--------CTSCQCA 360
PC C S + + + CT C AG+ C+ C DGY+ P C CQC
Sbjct: 2 PCPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCN 61
Query: 361 FHY---ATGNCAEGTGKC-ECRPEYTKPDCNSCAFGYFGYP-------NCEPCKCHMNGT 409
+ A GNC TG+C +C C+ C G+FG P C+ C C+ GT
Sbjct: 62 DNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGT 121
Query: 410 LD--FYCEPASGQQCPCKENYAGDHCDTCAQGYYNF 443
+ C P +GQ C C + +G C TC GYYN
Sbjct: 122 VQQQSSCNPVTGQ-CQCLPHVSGRDCGTCDPGYYNL 156
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 11/103 (10%)
Query: 555 CNCDIRGTEAGICDKTNGSCL-CKEGYTGARCDQCKAGYYGYP-------DCKLCGCSAV 606
CN +I G C++ G CL C G CD+CK G++G P CK C C+
Sbjct: 60 CNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPY 119
Query: 607 GS---SSTACDVSGKCPCLVNFGGKTCSQCSPGFYQYPQCKAC 646
G+ S+ V+G+C CL + G+ C C PG+Y + C
Sbjct: 120 GTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQSGQGC 162
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 67/166 (40%), Gaps = 23/166 (13%)
Query: 1245 HPCNCPFTAVCD--SYTGECICA---ARVIGKKCDQCEPNTFG-----YDPIIGCEECNC 1294
PC CP + C T E +C GK+C+ C+ FG P+ C C C
Sbjct: 1 QPCPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQC 60
Query: 1295 HPH-GVNGTQQCDLFDGSC-SCKENIVGRTCDHCVEGHWSFPY-------CVPCECDLRG 1345
+ + N C+ G C C N G CD C EG + P C C C+ G
Sbjct: 61 NDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYG 120
Query: 1346 TTI--DICNQGTAECYCKKNVYGAACDVCKEGTFDIQADNVDGCTR 1389
T CN T +C C +V G C C G +++Q+ GC R
Sbjct: 121 TVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQSG--QGCER 164
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 55/122 (45%), Gaps = 19/122 (15%)
Query: 248 CNSCAFGYFGYPN--------CEPCKCHMNGTLDFY--CEPASGQQCPCKENYAGDHCDT 297
C C GYFG P C PC+C+ N + C +G+ C N AG +CD
Sbjct: 34 CELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDR 93
Query: 298 CAQGYYNFP-------TCSPCECNAVGSLSDL--CEVDSGNCTCRNNFAGRTCDSCADGY 348
C +G++ P C C CN G++ C +G C C + +GR C +C GY
Sbjct: 94 CKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGY 153
Query: 349 YN 350
YN
Sbjct: 154 YN 155
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 60/134 (44%), Gaps = 29/134 (21%)
Query: 286 CKENYAGDHCDTCAQGYYNFPT--------CSPCECN------AVGSLSDLCEVDSGNC- 330
C AG C+ C GY+ P C PC+CN AVG+ + L +G C
Sbjct: 25 CPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRL----TGECL 80
Query: 331 TCRNNFAGRTCDSCADGYYNYP-------RCTSCQCAFHYAT---GNCAEGTGKCECRPE 380
C N AG CD C +G++ P +C +C C + +C TG+C+C P
Sbjct: 81 KCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPH 140
Query: 381 YTKPDCNSCAFGYF 394
+ DC +C GY+
Sbjct: 141 VSGRDCGTCDPGYY 154
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 65/141 (46%), Gaps = 28/141 (19%)
Query: 576 CKEGYTGARCDQCKAGYYGYPD--------CKLCGCS------AVGSSSTACDVSGKC-P 620
C G G RC+ C GY+G P C+ C C+ AVG+ + ++G+C
Sbjct: 25 CPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNR---LTGECLK 81
Query: 621 CLVNFGGKTCSQCSPGFYQYP-------QCKACNCDSHGNIG--VSCDD-DGKCQCEKNF 670
C+ N G C +C GF+ P +CKAC C+ +G + SC+ G+CQC +
Sbjct: 82 CIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPHV 141
Query: 671 GGDRCERCKEGLYNFPICEAC 691
G C C G YN + C
Sbjct: 142 SGRDCGTCDPGYYNLQSGQGC 162
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 54/130 (41%), Gaps = 19/130 (14%)
Query: 1181 EFCKKATFSMTISF---LHEALPCQCD--IDGSKSFECEQFGGQC-QCKPNVIGRRCEMC 1234
E C F + + PCQC+ ID + C + G+C +C N G C+ C
Sbjct: 35 ELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRC 94
Query: 1235 ATGYYGFP-------DCHPCNC-PFTAV-----CDSYTGECICAARVIGKKCDQCEPNTF 1281
G++G P C C C P+ V C+ TG+C C V G+ C C+P +
Sbjct: 95 KEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYY 154
Query: 1282 GYDPIIGCEE 1291
GCE
Sbjct: 155 NLQSGQGCER 164
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 58/132 (43%), Gaps = 22/132 (16%)
Query: 621 CLVNFGGKTCSQCSPGFYQYPQ--------CKACNCDSH---GNIGVSCDDDGKC-QCEK 668
C GK C C G++ P C+ C C+ + +G G+C +C
Sbjct: 25 CPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKCIY 84
Query: 669 NFGGDRCERCKEGLYNFPI-------CEACNCDSHGNIG--VSCDD-DGKCQCEKNFGGD 718
N G C+RCKEG + P+ C+AC C+ +G + SC+ G+CQC + G
Sbjct: 85 NTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPHVSGR 144
Query: 719 RCERCKEGLYNF 730
C C G YN
Sbjct: 145 DCGTCDPGYYNL 156
Score = 39.7 bits (91), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 63/149 (42%), Gaps = 25/149 (16%)
Query: 114 CQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFS-CEPCNCHGHADKCVYDPMVDEKRLSVD 172
C T G CE+C GY SN P C PC C+ + D + + + RL+
Sbjct: 25 CPTGTAGKRCELCDDGYFGDPL---GSNGPVRLCRPCQCNDNIDP---NAVGNCNRLT-- 76
Query: 173 IQGNYEGGGVCQECRDNTEGINCHQRVAGYYRPYGKHL--NETDVCQPCQCAFHYAT--- 227
G C +C NT G C + G++ G L N D C+ C C +
Sbjct: 77 --------GECLKCIYNTAGFYCDRCKEGFF---GNPLAPNPADKCKACACNPYGTVQQQ 125
Query: 228 GNCAEGTGKCECRPEYTKPDCNSCAFGYF 256
+C TG+C+C P + DC +C GY+
Sbjct: 126 SSCNPVTGQCQCLPHVSGRDCGTCDPGYY 154
>pdb|3ZYJ|B Chain B, Netring1 In Complex With Ngl1
pdb|3ZYJ|D Chain D, Netring1 In Complex With Ngl1
Length = 426
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 60/130 (46%), Gaps = 19/130 (14%)
Query: 6 RPAVWALERSADNGITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMS 65
R A +A R + LD +++FF T++R+RLLR +G +
Sbjct: 228 RFAFFAGPRLRNMASLYGQLDTTKKLRDFFT---------VTDLRIRLLRPA--VGEIFV 276
Query: 66 MADQDPTTTRRYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEV 125
D RYFY+I DI + GRC+CN HA VC D C C+HNT G +C
Sbjct: 277 ----DELHLARYFYAISDIKVRGRCKCNLHATVCVY----DNSKLTCECEHNTTGPDCGK 328
Query: 126 CCPGYEQKAW 135
C Y+ + W
Sbjct: 329 CKKNYQGRPW 338
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 64/170 (37%), Gaps = 25/170 (14%)
Query: 516 LFVIVTSEVQRLVSVIKPM--DHVYVRKDTRALAVTNARQVCNCDIRGTEAGICDKTNGS 573
F + ++ L + + D +++ + A++ R C C++ T + D + +
Sbjct: 256 FFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCNLHAT-VCVYDNSKLT 314
Query: 574 CLCKEGYTGARCDQCKAGYYGYPDCKLCGCSAVGSSSTACDVSGKCPCLVNFGGKTCSQC 633
C C+ TG C +CK Y G P ++ AC P + + G C
Sbjct: 315 CECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANAC-----IPSISSIGTNVCD-- 367
Query: 634 SPGFYQYPQCKACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCE--RCKEG 681
N H G +C ++ +C C + G CE RC+E
Sbjct: 368 -------------NELLHCQNGGTCHNNVRCLCPAAYTGILCEKLRCEEA 404
>pdb|3TBD|A Chain A, Crystal Structure Of Domain Vi And Le1 Of Human Netrin-G2
Length = 338
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 10/97 (10%)
Query: 40 LQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIKDISIGGRCRCNGHADVC 99
L+E+ T++R+RLLR LG + +YFY+I +I + GRC+CN HA++C
Sbjct: 226 LKEFFTLTDLRMRLLRPA--LGGTYVQREN----LYKYFYAISNIEVIGRCKCNLHANLC 279
Query: 100 DILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWR 136
+ + C C+HNT G +C C + ++WR
Sbjct: 280 SMREGS----LQCECEHNTTGPDCGKCKKNFRTRSWR 312
>pdb|3ZYG|A Chain A, Netring2 Lam And Egf1 Domains
pdb|3ZYG|B Chain B, Netring2 Lam And Egf1 Domains
pdb|3ZYI|B Chain B, Netring2 In Complex With Ngl2
Length = 353
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 10/97 (10%)
Query: 40 LQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIKDISIGGRCRCNGHADVC 99
L+E+ T++R+RLLR LG + +YFY+I +I + GRC+CN HA++C
Sbjct: 243 LKEFFTLTDLRMRLLRPA--LGGTYVQREN----LYKYFYAISNIEVIGRCKCNLHANLC 296
Query: 100 DILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWR 136
+ + C C+HNT G +C C + ++WR
Sbjct: 297 SMREGS----LQCECEHNTTGPDCGKCKKNFRTRSWR 329
>pdb|1TLE|A Chain A, Le (Laminin-Type Egf-Like) Module Giii4 In Solution At Ph
3.5 And 290 K, Nmr, 14 Structures
Length = 58
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 36/56 (64%)
Query: 1413 KPCECSGNINRTDPGSCDSVTGECTGCLFNSAGDSCQYCAPGYYGNAVSLKNCVKC 1468
+PC+C+ NI+ G+C+ +TGEC C++N+AG C C G++GN ++ KC
Sbjct: 1 RPCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKC 56
Score = 31.6 bits (70), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 555 CNCDIRGTEAGICDKTNGSCL-CKEGYTGARCDQCKAGYYGYP 596
CN +I G C++ G CL C G CD+CK G++G P
Sbjct: 5 CNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNP 47
>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3
Of Human Wnt Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 324
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 63/166 (37%), Gaps = 40/166 (24%)
Query: 557 CDIRGTEAGICDKTNGSCLCKEGYTGARCDQCKAGYYGYPDCKLCGCSAVGSSSTACDVS 616
C R G+C T G C+C G+ G CD+ CS + C
Sbjct: 183 CTPRCMNGGLC-VTPGFCICPPGFYGVNCDKAN-------------CSTTCFNGGTCFYP 228
Query: 617 GKCPCLVNFGGKTCSQCSPGFYQYPQCKACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCE 676
GKC C G+ QC+ C G C KC+C K + GD C
Sbjct: 229 GKCICPPGLEGE-------------QCEISKCPQPCRNGGKCIGKSKCKCSKGYQGDLCS 275
Query: 677 RCKEGLYNFPICEACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCER 722
+ P+CE C +HG +C + KCQC++ + G C +
Sbjct: 276 K--------PVCEP-GCGAHG----TCHEPNKCQCQEGWHGRHCNK 308
>pdb|2GY5|A Chain A, Tie2 Ligand-Binding Domain Crystal Structure
pdb|2GY7|B Chain B, Angiopoietin-2TIE2 COMPLEX CRYSTAL STRUCTURE
Length = 423
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 54/118 (45%), Gaps = 11/118 (9%)
Query: 565 GICDKTNGSCLCKEGYTGARCDQ-CKAGYYGYPDCKLCGCSAVGSSSTAC--DVSGKCPC 621
G+C + G C+C G+ G C++ C+ +G + C S C D G C C
Sbjct: 209 GVCHEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYG-CSC 267
Query: 622 LVNFGGKTCSQ-CSPGFYQYPQCKA-CNCDSHGNIGVSCDDDGKCQCEKNFGGDRCER 677
+ G C++ C PGFY P CK C+C N G CD C C + G +CER
Sbjct: 268 ATGWKGLQCNEACHPGFYG-PDCKLRCSC----NNGEMCDRFQGCLCSPGWQGLQCER 320
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 1225 NVIGRRCEMCATGYYGFPDC-HPCN-CPFTAVCDSYTGECICAARVIGKKCDQ-CEPNTF 1281
+I RRCE G P+C H C C VC TGECIC +G+ C++ CE +TF
Sbjct: 183 RLIVRRCEAQKWG----PECNHLCTACMNNGVCHEDTGECICPPGFMGRTCEKACELHTF 238
Query: 1282 G 1282
G
Sbjct: 239 G 239
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 55/127 (43%), Gaps = 9/127 (7%)
Query: 653 NIGVSCDDDGKCQCEKNFGGDRCER-CKEGLYNFPICEACNCDSHGNIGVSC-DDDGKCQ 710
N GV +D G+C C F G CE+ C+ + E C+ V C D C
Sbjct: 207 NNGVCHEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCS 266
Query: 711 CEKNFGGDRC-ERCKEGLYNFPICE-ECNCNPEGVLKTFAGCGSLPAGELCECK----PK 764
C + G +C E C G Y P C+ C+CN + F GC P + +C+ P+
Sbjct: 267 CATGWKGLQCNEACHPGFYG-PDCKLRCSCNNGEMCDRFQGCLCSPGWQGLQCEREGIPR 325
Query: 765 VQGRICD 771
+ +I D
Sbjct: 326 MTPKIVD 332
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 65/155 (41%), Gaps = 11/155 (7%)
Query: 572 GSCLCKEGYTGARCDQCKAGYYGYPDCKLCGCSAVGSSSTACDVSGKCPCLVNFGGKTCS 631
G L +T +C+A +G P+C C+A ++ + +G+C C F G+TC
Sbjct: 173 GGNLFTSAFTRLIVRRCEAQKWG-PECNHL-CTACMNNGVCHEDTGECICPPGFMGRTCE 230
Query: 632 QCSPGFYQYPQCKA-CNCDSHGNIGVSC-DDDGKCQCEKNFGGDRC-ERCKEGLYNFPIC 688
+ CK C+ V C D C C + G +C E C G Y P C
Sbjct: 231 KACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYG-PDC 289
Query: 689 EA-CNCDSHGNIGVSCDDDGKCQCEKNFGGDRCER 722
+ C+C N G CD C C + G +CER
Sbjct: 290 KLRCSC----NNGEMCDRFQGCLCSPGWQGLQCER 320
>pdb|3K6S|B Chain B, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|D Chain D, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|F Chain F, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|H Chain H, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K71|B Chain B, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|D Chain D, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|F Chain F, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|H Chain H, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K72|B Chain B, Structure Of Integrin Alphax Beta2
pdb|3K72|D Chain D, Structure Of Integrin Alphax Beta2
Length = 687
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 81/220 (36%), Gaps = 60/220 (27%)
Query: 544 RALAVTNARQV-------CNCDIRGTEAGICDKTN----GSCLCKEGYTGARCDQCKAGY 592
RAL T+ V C C + + +C G C C GY G C +C+
Sbjct: 407 RALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNC-ECQT-- 463
Query: 593 YGYPDCKLCGCSAVGSSSTACDVSGKCPCLVNFGGKTCSQC------SPG---FYQYPQC 643
G +L G ++S C G C C QC PG + QY +C
Sbjct: 464 QGRSSQELEGSCRKDNNSIICSGLGDC---------VCGQCLCHTSDVPGKLIYGQYCEC 514
Query: 644 KACNCDSH-----GNIGVSCDDDGKCQCEKNFGGD--RCERCKEGLYNFPICEACNCDSH 696
NC+ + G G GKC+C F G +CER EG N
Sbjct: 515 DTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQCERTTEGCLN------------ 562
Query: 697 GNIGVSCDDDGKCQCEKNFGGDRCERCKEGLYNFPICEEC 736
V C G+C+C + CE C G Y P+C+EC
Sbjct: 563 -PRRVECSGRGRCRC------NVCE-CHSG-YQLPLCQEC 593
>pdb|2DMB|A Chain A, Solution Structure Of The 15th Filamin Domain From Human
Filamin-B
Length = 124
Score = 32.7 bits (73), Expect = 1.9, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 1044 LDHKDAMVDIAGTVNNPGAYVFVVHFYQPDFPEFDMDVLIQNGQFYEA-QLPVKHCPA 1100
++++D DI T PG YV V F D P V+ +G+ + PV CP+
Sbjct: 62 IENEDGTYDIFYTAAKPGTYVIYVRFGGVDIPNSPFTVMATDGEVTAVEEAPVNACPS 119
>pdb|2R0B|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase-like
Serine/threonine/tyrosine-interacting Protein
Length = 154
Score = 32.7 bits (73), Expect = 2.1, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 1107 VVQQTNGNRMFTLEKNIVATFKEPNHKSVWLDYILLIPANEFNENIINELPYSRAKEFID 1166
V+Q+ + + +NI A F +PN + ++ Y++L A+ ENII P + KEFID
Sbjct: 28 VLQKHGITHIICIRQNIEANFIKPNFQQLF-RYLVLDIADNPVENIIRFFPMT--KEFID 84
>pdb|1LK9|A Chain A, The Three-Dimensional Structure Of Alliinase From Garlic
pdb|1LK9|B Chain B, The Three-Dimensional Structure Of Alliinase From Garlic
Length = 448
Score = 32.3 bits (72), Expect = 2.6, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 221 CAFH---YATGNCAEGTGKCECRPEYTKPDCN 249
C+ H + G +EG+ KCEC YT PDC+
Sbjct: 20 CSEHGRAFLDGIISEGSPKCECNTCYTGPDCS 51
Score = 32.3 bits (72), Expect = 2.6, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 359 CAFH---YATGNCAEGTGKCECRPEYTKPDCN 387
C+ H + G +EG+ KCEC YT PDC+
Sbjct: 20 CSEHGRAFLDGIISEGSPKCECNTCYTGPDCS 51
>pdb|2HOR|A Chain A, Crystal Structure Of Alliinase From Garlic- Apo Form
pdb|2HOX|A Chain A, Alliinase From Allium Sativum (Garlic)
pdb|2HOX|B Chain B, Alliinase From Allium Sativum (Garlic)
pdb|2HOX|C Chain C, Alliinase From Allium Sativum (Garlic)
pdb|2HOX|D Chain D, Alliinase From Allium Sativum (Garlic)
Length = 427
Score = 32.3 bits (72), Expect = 2.8, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 221 CAFH---YATGNCAEGTGKCECRPEYTKPDCN 249
C+ H + G +EG+ KCEC YT PDC+
Sbjct: 20 CSEHGRAFLDGIISEGSPKCECNTCYTGPDCS 51
Score = 32.3 bits (72), Expect = 2.8, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 359 CAFH---YATGNCAEGTGKCECRPEYTKPDCN 387
C+ H + G +EG+ KCEC YT PDC+
Sbjct: 20 CSEHGRAFLDGIISEGSPKCECNTCYTGPDCS 51
>pdb|4FLN|A Chain A, Crystal Structure Of Plant Protease Deg2
pdb|4FLN|B Chain B, Crystal Structure Of Plant Protease Deg2
pdb|4FLN|C Chain C, Crystal Structure Of Plant Protease Deg2
Length = 539
Score = 31.2 bits (69), Expect = 5.6, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 945 KVSVFEFDTNYISVELTADENPTNNASAAIQKIVAIPEAKWSMDHIQPKTECVRKDGQCV 1004
K VFEF+ NY++V + +N+AS I K IP + S D ++P + + D Q +
Sbjct: 463 KYLVFEFEDNYVAV---LEREASNSASLCILKDYGIPSER-SADLLEPYVDPI-DDTQAL 517
Query: 1005 QAMFPTSP 1012
SP
Sbjct: 518 DQGIGDSP 525
>pdb|2NQV|A Chain A, Moea D228a
pdb|2NQV|B Chain B, Moea D228a
Length = 411
Score = 30.8 bits (68), Expect = 8.1, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 874 DQPKLRFDMRITKPGPHVLVLSYVTPGPHTQDSAVIQLEASSQTTVERGNVRLHDCPYTT 933
D +L + + + G V+ L + PH +A I+ ++ + + G V + + YT
Sbjct: 203 DTNRLAVHLMLEQLGCEVINLGIIRADPHALRAAFIEADSQADVVISSGGVSVGEADYTK 262
Query: 934 PCRATVLDKQGKVSVFEF 951
T+L++ G+++ ++
Sbjct: 263 ----TILEELGEIAFWKL 276
>pdb|1FC5|A Chain A, Crystal Structure Of Molybdopterin Biosynthesis Moea
Protein
pdb|1FC5|B Chain B, Crystal Structure Of Molybdopterin Biosynthesis Moea
Protein
Length = 411
Score = 30.4 bits (67), Expect = 9.2, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 874 DQPKLRFDMRITKPGPHVLVLSYVTPGPHTQDSAVIQLEASSQTTVERGNVRLHDCPYTT 933
D +L + + + G V+ L + PH +A I+ ++ + + G V + + YT
Sbjct: 203 DTNRLAVHLXLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYTK 262
Query: 934 PCRATVLDKQGKVSVFEF 951
T+L++ G+++ ++
Sbjct: 263 ----TILEELGEIAFWKL 276
>pdb|2BRQ|A Chain A, Crystal Structure Of The Filamin A Repeat 21 Complexed With
The Integrin Beta7 Cytoplasmic Tail Peptide
pdb|2BRQ|B Chain B, Crystal Structure Of The Filamin A Repeat 21 Complexed With
The Integrin Beta7 Cytoplasmic Tail Peptide
pdb|2JF1|A Chain A, Crystal Structure Of The Filamin A Repeat 21 Complexed With
The Integrin Beta2 Cytoplasmic Tail Peptide
Length = 97
Score = 30.4 bits (67), Expect = 9.6, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 1020 ESGLGPLATQLPGSLADNKTGLVYLDHKDAMVDIAGTVNNPGAYVFVVHFYQPDFPE 1076
E+G G LA + G +K + + D KD +A V PG Y V F + P+
Sbjct: 33 EAGAGGLAIAVEGP---SKAEISFEDRKDGSCGVAYVVQEPGDYEVSVKFNEEHIPD 86
>pdb|1G8L|A Chain A, Crystal Structure Of Escherichia Coli Moea
pdb|1G8L|B Chain B, Crystal Structure Of Escherichia Coli Moea
pdb|1G8R|A Chain A, Moea
pdb|1G8R|B Chain B, Moea
Length = 411
Score = 30.4 bits (67), Expect = 9.9, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 874 DQPKLRFDMRITKPGPHVLVLSYVTPGPHTQDSAVIQLEASSQTTVERGNVRLHDCPYTT 933
D +L + + + G V+ L + PH +A I+ ++ + + G V + + YT
Sbjct: 203 DTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYTK 262
Query: 934 PCRATVLDKQGKVSVFEF 951
T+L++ G+++ ++
Sbjct: 263 ----TILEELGEIAFWKL 276
>pdb|2NQS|A Chain A, Moea E188a
pdb|2NQS|B Chain B, Moea E188a
Length = 411
Score = 30.4 bits (67), Expect = 9.9, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 874 DQPKLRFDMRITKPGPHVLVLSYVTPGPHTQDSAVIQLEASSQTTVERGNVRLHDCPYTT 933
D +L + + + G V+ L + PH +A I+ ++ + + G V + + YT
Sbjct: 203 DTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYTK 262
Query: 934 PCRATVLDKQGKVSVFEF 951
T+L++ G+++ ++
Sbjct: 263 ----TILEELGEIAFWKL 276
>pdb|2NRO|A Chain A, Moea K279q
pdb|2NRO|B Chain B, Moea K279q
Length = 411
Score = 30.4 bits (67), Expect = 9.9, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 874 DQPKLRFDMRITKPGPHVLVLSYVTPGPHTQDSAVIQLEASSQTTVERGNVRLHDCPYTT 933
D +L + + + G V+ L + PH +A I+ ++ + + G V + + YT
Sbjct: 203 DTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYTK 262
Query: 934 PCRATVLDKQGKVSVFEF 951
T+L++ G+++ ++
Sbjct: 263 ----TILEELGEIAFWKL 276
>pdb|2NRP|A Chain A, Moea R350a
pdb|2NRP|B Chain B, Moea R350a
Length = 411
Score = 30.4 bits (67), Expect = 9.9, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 874 DQPKLRFDMRITKPGPHVLVLSYVTPGPHTQDSAVIQLEASSQTTVERGNVRLHDCPYTT 933
D +L + + + G V+ L + PH +A I+ ++ + + G V + + YT
Sbjct: 203 DTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYTK 262
Query: 934 PCRATVLDKQGKVSVFEF 951
T+L++ G+++ ++
Sbjct: 263 ----TILEELGEIAFWKL 276
>pdb|2NQQ|A Chain A, Moea R137q
pdb|2NQQ|B Chain B, Moea R137q
pdb|2NQQ|C Chain C, Moea R137q
pdb|2NQQ|D Chain D, Moea R137q
Length = 411
Score = 30.4 bits (67), Expect = 9.9, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 874 DQPKLRFDMRITKPGPHVLVLSYVTPGPHTQDSAVIQLEASSQTTVERGNVRLHDCPYTT 933
D +L + + + G V+ L + PH +A I+ ++ + + G V + + YT
Sbjct: 203 DTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYTK 262
Query: 934 PCRATVLDKQGKVSVFEF 951
T+L++ G+++ ++
Sbjct: 263 ----TILEELGEIAFWKL 276
>pdb|2NQR|A Chain A, Moea D142n
pdb|2NQR|B Chain B, Moea D142n
Length = 411
Score = 30.4 bits (67), Expect = 9.9, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 874 DQPKLRFDMRITKPGPHVLVLSYVTPGPHTQDSAVIQLEASSQTTVERGNVRLHDCPYTT 933
D +L + + + G V+ L + PH +A I+ ++ + + G V + + YT
Sbjct: 203 DTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYTK 262
Query: 934 PCRATVLDKQGKVSVFEF 951
T+L++ G+++ ++
Sbjct: 263 ----TILEELGEIAFWKL 276
>pdb|2NQN|A Chain A, Moea T100w
pdb|2NQN|B Chain B, Moea T100w
Length = 411
Score = 30.4 bits (67), Expect = 9.9, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 874 DQPKLRFDMRITKPGPHVLVLSYVTPGPHTQDSAVIQLEASSQTTVERGNVRLHDCPYTT 933
D +L + + + G V+ L + PH +A I+ ++ + + G V + + YT
Sbjct: 203 DTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYTK 262
Query: 934 PCRATVLDKQGKVSVFEF 951
T+L++ G+++ ++
Sbjct: 263 ----TILEELGEIAFWKL 276
>pdb|2NQU|A Chain A, Moea E188q
pdb|2NQU|B Chain B, Moea E188q
Length = 411
Score = 30.4 bits (67), Expect = 9.9, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 874 DQPKLRFDMRITKPGPHVLVLSYVTPGPHTQDSAVIQLEASSQTTVERGNVRLHDCPYTT 933
D +L + + + G V+ L + PH +A I+ ++ + + G V + + YT
Sbjct: 203 DTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYTK 262
Query: 934 PCRATVLDKQGKVSVFEF 951
T+L++ G+++ ++
Sbjct: 263 ----TILEELGEIAFWKL 276
>pdb|2NQK|A Chain A, Moea D59n Mutant
pdb|2NQK|B Chain B, Moea D59n Mutant
Length = 411
Score = 30.4 bits (67), Expect = 9.9, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 874 DQPKLRFDMRITKPGPHVLVLSYVTPGPHTQDSAVIQLEASSQTTVERGNVRLHDCPYTT 933
D +L + + + G V+ L + PH +A I+ ++ + + G V + + YT
Sbjct: 203 DTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYTK 262
Query: 934 PCRATVLDKQGKVSVFEF 951
T+L++ G+++ ++
Sbjct: 263 ----TILEELGEIAFWKL 276
>pdb|2NRS|A Chain A, Moea S371w
pdb|2NRS|B Chain B, Moea S371w
Length = 411
Score = 30.4 bits (67), Expect = 9.9, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 874 DQPKLRFDMRITKPGPHVLVLSYVTPGPHTQDSAVIQLEASSQTTVERGNVRLHDCPYTT 933
D +L + + + G V+ L + PH +A I+ ++ + + G V + + YT
Sbjct: 203 DTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYTK 262
Query: 934 PCRATVLDKQGKVSVFEF 951
T+L++ G+++ ++
Sbjct: 263 ----TILEELGEIAFWKL 276
>pdb|2NQM|A Chain A, Moea T100a Mutant
pdb|2NQM|B Chain B, Moea T100a Mutant
Length = 411
Score = 30.4 bits (67), Expect = 9.9, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 874 DQPKLRFDMRITKPGPHVLVLSYVTPGPHTQDSAVIQLEASSQTTVERGNVRLHDCPYTT 933
D +L + + + G V+ L + PH +A I+ ++ + + G V + + YT
Sbjct: 203 DTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYTK 262
Query: 934 PCRATVLDKQGKVSVFEF 951
T+L++ G+++ ++
Sbjct: 263 ----TILEELGEIAFWKL 276
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.472
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,626,725
Number of Sequences: 62578
Number of extensions: 2915910
Number of successful extensions: 6408
Number of sequences better than 100.0: 108
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 5448
Number of HSP's gapped (non-prelim): 717
length of query: 1873
length of database: 14,973,337
effective HSP length: 113
effective length of query: 1760
effective length of database: 7,902,023
effective search space: 13907560480
effective search space used: 13907560480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)