Query psy12394
Match_columns 1873
No_of_seqs 738 out of 3765
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 18:03:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12394.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12394hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0994|consensus 100.0 2E-142 5E-147 1300.6 46.8 876 3-1580 141-1119(1758)
2 KOG1836|consensus 100.0 6E-108 1E-112 1101.4 44.8 1306 1-1411 142-1617(1705)
3 KOG0994|consensus 100.0 3.2E-73 6.9E-78 695.0 27.4 503 1214-1850 296-1073(1758)
4 KOG1836|consensus 100.0 1E-56 2.3E-61 606.2 38.8 685 618-1671 301-1033(1705)
5 KOG3512|consensus 100.0 1.1E-53 2.3E-58 491.1 16.6 276 4-297 147-479 (592)
6 KOG3512|consensus 99.9 1.5E-24 3.1E-29 251.5 4.6 103 1718-1827 295-434 (592)
7 KOG4289|consensus 99.8 2.7E-19 5.8E-24 225.3 22.8 118 596-725 1717-1841(2531)
8 smart00136 LamNT Laminin N-ter 99.8 1.7E-20 3.7E-25 214.0 8.2 83 1-88 107-238 (238)
9 KOG4289|consensus 99.8 1.6E-18 3.4E-23 218.6 24.6 129 329-475 1223-1359(2531)
10 PF00055 Laminin_N: Laminin N- 99.8 1.2E-20 2.6E-25 216.0 4.9 84 1-88 105-237 (237)
11 KOG3509|consensus 99.5 1.1E-12 2.4E-17 170.7 27.9 588 1219-1850 36-866 (964)
12 KOG3509|consensus 99.1 5.5E-09 1.2E-13 136.9 22.8 410 1258-1794 425-903 (964)
13 KOG1225|consensus 98.9 4.3E-09 9.3E-14 131.4 11.2 168 570-822 190-365 (525)
14 KOG1225|consensus 98.8 1.2E-08 2.7E-13 127.3 10.8 131 236-432 235-365 (525)
15 KOG1219|consensus 98.7 1.6E-08 3.6E-13 134.3 7.2 110 306-434 3865-3977(4289)
16 KOG1219|consensus 98.6 4.7E-08 1E-12 130.3 7.0 108 213-342 3864-3977(4289)
17 KOG1217|consensus 98.4 1.1E-05 2.4E-10 103.8 21.4 209 182-431 153-389 (487)
18 smart00180 EGF_Lam Laminin-typ 98.4 2.8E-07 6.1E-12 78.8 4.3 40 1292-1332 1-40 (46)
19 cd00055 EGF_Lam Laminin-type e 98.4 2.7E-07 5.9E-12 80.5 4.1 43 1291-1334 1-43 (50)
20 PF00053 Laminin_EGF: Laminin 98.4 1.9E-07 4.2E-12 81.1 2.7 43 1292-1335 1-43 (49)
21 cd00055 EGF_Lam Laminin-type e 98.3 5.2E-07 1.1E-11 78.7 4.6 49 1338-1387 1-49 (50)
22 KOG1217|consensus 98.3 1.8E-05 4E-10 101.8 20.8 148 234-433 109-265 (487)
23 PF00053 Laminin_EGF: Laminin 98.3 2.2E-07 4.7E-12 80.8 1.8 48 1339-1386 1-48 (49)
24 smart00180 EGF_Lam Laminin-typ 98.3 7.7E-07 1.7E-11 76.1 4.2 40 1339-1378 1-40 (46)
25 KOG1226|consensus 98.2 7.7E-06 1.7E-10 103.8 12.7 85 757-857 566-651 (783)
26 KOG1226|consensus 97.7 9.8E-05 2.1E-09 94.1 10.5 131 281-438 478-624 (783)
27 KOG1218|consensus 97.7 0.0032 6.9E-08 77.0 21.7 165 228-434 8-176 (316)
28 KOG1218|consensus 97.6 0.0034 7.3E-08 76.8 21.7 165 573-772 125-297 (316)
29 KOG4260|consensus 97.6 6.6E-05 1.4E-09 84.1 5.0 55 186-258 132-191 (350)
30 KOG4260|consensus 97.2 0.0006 1.3E-08 76.7 6.4 154 576-765 132-303 (350)
31 KOG1388|consensus 96.3 0.0048 1E-07 68.5 5.4 79 1287-1374 47-130 (217)
32 KOG1214|consensus 96.3 0.06 1.3E-06 69.0 15.1 130 194-340 717-860 (1289)
33 KOG1388|consensus 96.2 0.0026 5.5E-08 70.6 2.6 120 1237-1379 42-167 (217)
34 PF00008 EGF: EGF-like domain 95.6 0.0053 1.2E-07 48.4 1.2 32 399-432 1-32 (32)
35 KOG1214|consensus 95.5 0.27 5.9E-06 63.4 15.8 128 234-379 808-947 (1289)
36 smart00051 DSL delta serrate l 94.0 0.061 1.3E-06 49.4 4.0 44 619-675 19-63 (63)
37 PF00008 EGF: EGF-like domain 93.8 0.04 8.7E-07 43.5 2.0 29 357-385 1-32 (32)
38 smart00179 EGF_CA Calcium-bind 92.7 0.14 3E-06 41.7 3.8 36 396-434 2-39 (39)
39 smart00051 DSL delta serrate l 92.6 0.13 2.8E-06 47.3 3.7 45 663-720 18-63 (63)
40 PF07974 EGF_2: EGF-like domai 92.6 0.11 2.5E-06 40.9 2.8 23 226-248 10-32 (32)
41 PF07974 EGF_2: EGF-like domai 92.4 0.13 2.8E-06 40.7 2.9 26 361-386 7-32 (32)
42 PF12661 hEGF: Human growth fa 92.0 0.068 1.5E-06 33.4 0.8 13 236-248 1-13 (13)
43 PF12661 hEGF: Human growth fa 91.0 0.12 2.6E-06 32.4 1.1 13 374-386 1-13 (13)
44 cd00054 EGF_CA Calcium-binding 91.0 0.29 6.4E-06 39.3 3.9 36 396-434 2-38 (38)
45 PF03302 VSP: Giardia variant- 90.0 18 0.00039 45.9 20.2 49 1500-1566 205-253 (397)
46 smart00179 EGF_CA Calcium-bind 89.2 0.49 1.1E-05 38.5 3.8 34 213-249 2-39 (39)
47 cd00054 EGF_CA Calcium-binding 86.1 0.94 2E-05 36.3 3.7 24 226-249 13-38 (38)
48 cd00053 EGF Epidermal growth f 85.9 0.98 2.1E-05 35.6 3.6 31 401-434 5-36 (36)
49 PF01414 DSL: Delta serrate li 84.0 0.35 7.5E-06 44.6 0.2 46 617-675 17-63 (63)
50 smart00181 EGF Epidermal growt 80.7 2 4.3E-05 34.2 3.4 29 402-434 6-35 (35)
51 PF01414 DSL: Delta serrate li 75.8 0.94 2E-05 41.8 0.2 47 756-823 16-63 (63)
52 cd00053 EGF Epidermal growth f 74.6 3.9 8.4E-05 32.1 3.5 24 226-249 10-36 (36)
53 PF12947 EGF_3: EGF domain; I 74.2 1.1 2.4E-05 36.6 0.2 27 742-768 6-32 (36)
54 PF03302 VSP: Giardia variant- 73.8 52 0.0011 41.9 14.9 14 1446-1459 37-50 (397)
55 PTZ00214 high cysteine membran 72.7 70 0.0015 44.3 16.6 120 246-387 559-700 (800)
56 KOG0196|consensus 71.8 4.3 9.3E-05 53.7 4.6 20 1717-1736 258-281 (996)
57 smart00281 LamB Laminin B doma 66.3 2.2 4.7E-05 45.2 0.4 93 1506-1621 3-111 (127)
58 smart00181 EGF Epidermal growt 65.8 7.7 0.00017 30.8 3.4 23 226-249 10-35 (35)
59 PF07645 EGF_CA: Calcium-bindi 65.2 4.1 8.9E-05 34.3 1.8 31 213-244 2-34 (42)
60 PF07645 EGF_CA: Calcium-bindi 64.1 3.3 7.2E-05 34.8 1.0 31 396-429 2-34 (42)
61 KOG0196|consensus 63.0 9.2 0.0002 50.8 5.0 42 1258-1299 257-303 (996)
62 PF12947 EGF_3: EGF domain; I 47.2 10 0.00022 31.1 1.2 27 403-432 7-33 (36)
63 PHA02887 EGF-like protein; Pro 45.2 17 0.00038 37.1 2.7 31 403-435 93-123 (126)
64 PHA03099 epidermal growth fact 43.4 18 0.0004 37.6 2.6 31 403-435 52-82 (139)
65 cd00185 TNFR Tumor necrosis fa 41.3 73 0.0016 32.1 6.6 18 413-430 68-85 (98)
66 PHA02887 EGF-like protein; Pro 38.2 27 0.00058 35.9 2.8 19 107-125 105-123 (126)
67 PHA03099 epidermal growth fact 33.9 27 0.00059 36.4 2.1 27 361-388 52-82 (139)
68 PF00052 Laminin_B: Laminin B 33.4 16 0.00035 39.1 0.4 86 1509-1618 1-105 (136)
69 PF03944 Endotoxin_C: delta en 31.0 2.9E+02 0.0063 29.9 9.6 36 1038-1073 26-64 (143)
70 PTZ00214 high cysteine membran 29.2 3.3E+02 0.0072 37.9 11.8 16 707-722 682-701 (800)
71 PF09064 Tme5_EGF_like: Thromb 26.9 41 0.00088 27.2 1.5 18 413-430 11-28 (34)
72 KOG4611|consensus 24.8 81 0.0017 37.8 4.1 55 1271-1340 50-119 (747)
No 1
>KOG0994|consensus
Probab=100.00 E-value=2.1e-142 Score=1300.55 Aligned_cols=876 Identities=33% Similarity=0.759 Sum_probs=701.9
Q ss_pred CCCCCCceEEEeeccCC-----------------------------------------------eEEEccCCCCCCCCCC
Q psy12394 3 NSPRPAVWALERSADNG-----------------------------------------------ITISLLDHRPSMKNFF 35 (1873)
Q Consensus 3 ~sprp~~~~~ers~d~g-----------------------------------------------i~~s~~~~rp~~~~~~ 35 (1873)
.||||++|+||||.||| |+|++|... +...--
T Consensus 141 ktfRPAAMliERS~DFGkTW~vYrYFAyDC~asFPGv~~~~~kk~~DviCtSrYS~~~PstgGEVifrvl~P~-~~iedP 219 (1758)
T KOG0994|consen 141 KTFRPAAMLIERSSDFGKTWHVYRYFAYDCSATFPGVPTGPPKKWDDVICTSRYSDPEPSTGGEVIFRVLDPA-IDIEDP 219 (1758)
T ss_pred ccCCcceeeeeecccccccceeeeeeecccccCCCCCCCCCcccccceeeecccCCCCCCCCCeEEEEecCCC-CCCCCc
Confidence 68999999999999999 888888874 222223
Q ss_pred CchhhhhheeeeeeeEeeccccccccccccccCCCCCcceeeeEEeeeeeeeeeeccCCCCCcCccCCCCC---------
Q psy12394 36 NSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIKDISIGGRCRCNGHADVCDILDPED--------- 106 (1873)
Q Consensus 36 ~s~~l~~~~~at~ir~~~~~~~t~~~~~~~~~~~~~~~~~~~yYai~d~~v~grC~C~gHa~~C~~~~~~~--------- 106 (1873)
+|+++|+.+++|||||.|+|++||+++|++ ..+.+..+|||||+||.|.|+|+|||||++|.+.++..
T Consensus 220 Ys~~IQ~~LKITNLRvn~tklhtlgdnllD---~r~E~~ekyyYAiy~~vVrGsCfCyGHAs~C~P~~g~~s~~~~~ta~ 296 (1758)
T KOG0994|consen 220 YSAKIQELLKITNLRVNFTKLHTLGDNLLD---SREEIREKYYYAIYDLVVRGSCFCYGHASQCAPVDGARSAKAPGTAH 296 (1758)
T ss_pred hhHHHHHHhhhhheeeeeEeeccccccccc---cccccccchhheeeeeeeecceeecCchhhcccCCCCCcccCCCccc
Confidence 699999999999999999999999999875 34566789999999999999999999999999987543
Q ss_pred CccceeecCCCCCCCCCCCCCCCccCCcCCcCCCCCCCCccCCCCCCCCCccccCccccccCcccccCcCcCCCceeCCC
Q psy12394 107 PYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSCEPCNCHGHADKCVYDPMVDEKRLSVDIQGNYEGGGVCQEC 186 (1873)
Q Consensus 107 ~~~~~C~C~h~t~G~~Ce~c~p~~~~~p~~~~~~~~~~~C~~C~C~~~~~~C~~d~~~~~~~~s~~~~g~~~~GG~C~~C 186 (1873)
+++.+|.|.|||.|.|||.|.|+||+.||+|+...++|+|++|+||+|+.+|+||..++.. +|. ..||||.+|
T Consensus 297 mVHG~C~C~HNT~G~nCE~C~~fYnDlPWrpAeG~~~neCrkC~CNgHa~sCHFD~aV~~A------SG~-vSGGVCDdC 369 (1758)
T KOG0994|consen 297 MVHGRCMCKHNTAGLNCEHCAPFYNDLPWRPAEGKTSNECRKCECNGHADTCHFDMAVYEA------SGN-VSGGVCDDC 369 (1758)
T ss_pred eecceeEeccCCCCCChHHhhHhhcCCCCCccCCCCcccccccCCCCCcccccccHHHHhh------cCC-cccccCccc
Confidence 5689999999999999999999999999999999999999999999999999999999876 454 378999999
Q ss_pred CCCCCCCCCCCCCCCCccCCCCCCCCCCCCccCCCCCCCCCCeeecCCCceecCCCCcCCCCcccCCcccCCCCCCCCCC
Q psy12394 187 RDNTEGINCHQRVAGYYRPYGKHLNETDVCQPCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKC 266 (1873)
Q Consensus 187 ~~~~~G~~Ce~C~~g~~~~~~~~~~~~~~C~~C~C~~~~n~g~C~~~~g~C~C~~G~~G~~Ce~C~~g~~g~~~C~~c~C 266 (1873)
+|||+|.|||+|+|.|||++.++++++++|+||.|+|.++.
T Consensus 370 qHNT~G~~CE~CkP~fYRdprr~i~~p~vC~pC~CdP~GS~--------------------------------------- 410 (1758)
T KOG0994|consen 370 QHNTEGQNCERCKPFFYRDPRRDISDPDVCKPCECDPAGSQ--------------------------------------- 410 (1758)
T ss_pred cccccccchhhcCcccccCCCCCCCCccccccccCCCCcCc---------------------------------------
Confidence 99999999999999999999999999888888887632210
Q ss_pred CCCCCCCceecCCCCCcccCCCCCccCCCccCCCCCCCCCCCCCCCcCCCCCCCCcccCCCcccccCCCcccCCCccCCC
Q psy12394 267 HMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFPTCSPCECNAVGSLSDLCEVDSGNCTCRNNFAGRTCDSCAD 346 (1873)
Q Consensus 267 ~~~gt~~~~C~~~~G~~C~C~~g~~G~~Ce~C~~Gf~g~~~C~~c~C~~~gs~~~~C~~~~g~C~C~~G~~G~~Ce~C~~ 346 (1873)
++ +.|+.
T Consensus 411 -------------~~---------------------------------------g~cds--------------------- 417 (1758)
T KOG0994|consen 411 -------------DG---------------------------------------GICDS--------------------- 417 (1758)
T ss_pred -------------CC---------------------------------------Ccccc---------------------
Confidence 00 00000
Q ss_pred CCcCCCCCCcCCCCCCCCCceecCCCCeeeeCCCccCCCCccCCCCccCCCCCCCCCCCCCcEeeeeccCCCCCeeeCCC
Q psy12394 347 GYYNYPRCTSCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKE 426 (1873)
Q Consensus 347 G~~g~~~C~~C~c~~c~n~g~C~~~~g~C~C~~G~tG~~Ce~C~~g~~~~~~C~~~~C~n~gtc~~~cd~~~g~~C~C~~ 426 (1873)
.+|+.+|
T Consensus 418 ------------------------------------------------------------------~~Dp~~G------- 424 (1758)
T KOG0994|consen 418 ------------------------------------------------------------------FCDPSTG------- 424 (1758)
T ss_pred ------------------------------------------------------------------ccCcccc-------
Confidence 0000000
Q ss_pred CcccCCCCcCCCCcccCCCcccccCCCcceeeeeecccccceEEEEeeeeeeeeecceeEEEEEeeccccCCCcceeeee
Q psy12394 427 NYAGDHCDTCAQGYYNFPTCSQITLPDVPVIRVLMATITTHAVLLVNVTRLVLCLTCVKLILAIVRAEITLPDVPVIRVL 506 (1873)
Q Consensus 427 g~~G~~Ce~C~~g~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 506 (1873)
T Consensus 425 -------------------------------------------------------------------------------- 424 (1758)
T KOG0994|consen 425 -------------------------------------------------------------------------------- 424 (1758)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeeceeeEEeehhHHHHhhccccccCcccccccccccccccCCcccccCCCCCcccccccCCCceecCCCCCCCCCCc
Q psy12394 507 MATITTHAVLFVIVTSEVQRLVSVIKPMDHVYVRKDTRALAVTNARQVCNCDIRGTEAGICDKTNGSCLCKEGYTGARCD 586 (1873)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~C~~~gt~~~~C~~~~g~C~C~~G~~G~~Ce 586 (1873)
T Consensus 425 -------------------------------------------------------------------------------- 424 (1758)
T KOG0994|consen 425 -------------------------------------------------------------------------------- 424 (1758)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccCCCCCcccCCCCCCcCCccCCCCCcccCCCCccCCCCCCCCCCcCCCCCCccCCCCCCCCCCcccCCCcceec
Q psy12394 587 QCKAGYYGYPDCKLCGCSAVGSSSTACDVSGKCPCLVNFGGKTCSQCSPGFYQYPQCKACNCDSHGNIGVSCDDDGKCQC 666 (1873)
Q Consensus 587 ~C~~g~~~~~~C~~c~C~~~Gt~~~~C~~~g~C~C~~G~~G~~Ce~C~~g~~g~~~C~~c~C~~~~~~gg~C~~~g~C~C 666 (1873)
T Consensus 425 -------------------------------------------------------------------------------- 424 (1758)
T KOG0994|consen 425 -------------------------------------------------------------------------------- 424 (1758)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCcccCCCccCCCCcccCCCCCCCCCCcccCCCCceeeCCCcccCCCCcCCCCCccCCCCcCCCCCCCCCccC
Q psy12394 667 EKNFGGDRCERCKEGLYNFPICEACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCERCKEGLYNFPICEECNCNPEGVLKT 746 (1873)
Q Consensus 667 ~~g~~G~~Ce~C~~g~~g~~~C~~C~C~~~g~~~~~C~~~g~C~C~~g~~G~~Ce~C~~g~~g~p~C~~C~C~~~Gs~~~ 746 (1873)
T Consensus 425 -------------------------------------------------------------------------------- 424 (1758)
T KOG0994|consen 425 -------------------------------------------------------------------------------- 424 (1758)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCCCceecCCCcccCCccccCCCCcCCCCCCCCCCCcCcCCCCCcccCCcccCCCCCceecCCCCccCCCCCC
Q psy12394 747 FAGCGSLPAGELCECKPKVQGRICDECRPLYWNLKASNPDGCEDCDCYTLGTIGGIKNCNPKSGQCVCKATAMNRKCDAC 826 (1873)
Q Consensus 747 ~~~C~~~~~~g~C~C~~g~~G~~C~~C~~g~~g~~~~~~~~C~~c~C~~~Gt~~~~~~C~~~tg~C~C~~g~~G~~C~~C 826 (1873)
-..|+|.||+++.|++|++|++|||||+..|+.||.+|.|++.||..+.+ ||+.||.|.||+.++|..|++|
T Consensus 425 -------lvaGqC~CK~~V~G~RCd~Ck~Gywgl~~~dp~GC~~C~CN~lGT~~~s~-CD~~TG~C~ckrlvTg~~cdqc 496 (1758)
T KOG0994|consen 425 -------LVAGQCRCKEHVAGRRCDRCKDGYWGLTSADPYGCRPCDCNPLGTRNGSG-CDPETGDCYCKRLVTGIDCDQC 496 (1758)
T ss_pred -------ccccccccccCcCccccchhccCcccCccCCCCCccccccccccccCCCC-CCCCCCceEeeccccCCCcccc
Confidence 01267889999999999999999999999999999999999999998866 9999999999999999999999
Q ss_pred CCCCccCcCCCCCCCccCcCCCCCcccccccCCCCCCCCCccccccCCCCceeeeeeeecCCCeeEEEEeecCCCCCCCC
Q psy12394 827 MDGTYALQDNNLFGCTECACDIGGSINNLCNKDLSALNSEELPLLNKDQPKLRFDMRITKPGPHVLVLSYVTPGPHTQDS 906 (1873)
Q Consensus 827 ~~g~~g~~~~~~~gC~~C~C~~gg~~~~~C~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~g~y~~~l~y~~~~~~~~~~ 906 (1873)
+|.+|||+ +.++||++|+||+||++.+.|+..+|++ +++++|.||+ +..+.+++|..+|+.+.++++..+.
T Consensus 497 lPeh~gLs-~~~~gc~~cdcd~GGs~d~sc~~~sGqC--~CRe~~~GR~------c~~~~~~yy~~~l~h~i~eAe~~~~ 567 (1758)
T KOG0994|consen 497 LPEHWGLS-NDLEGCRPCDCDQGGSYDNSCDLHSGQC--ECREHMLGRR------CEQVCPGYYSPVLDHYIYEAEDAGT 567 (1758)
T ss_pred CccccccC-CCCCCCcccccCCCCCCCcccccccCcc--cccccccccc------ccccCCcccccccchhhhhhhhccc
Confidence 99999998 5789999999999999999999999998 6777888875 4588999999999988777764310
Q ss_pred ceEEEeecccccccccceEeecCCCCCCcceeeecCCCceEEEEeccCceEEEEeccCCCCCCccceEEEEEeeccCccc
Q psy12394 907 AVIQLEASSQTTVERGNVRLHDCPYTTPCRATVLDKQGKVSVFEFDTNYISVELTADENPTNNASAAIQKIVAIPEAKWS 986 (1873)
Q Consensus 907 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~~~ 986 (1873)
.+ .+.+.. ...+.+. +
T Consensus 568 ~~-~~~v~~-----------------------------------------r~~~~~~-----------------~----- 583 (1758)
T KOG0994|consen 568 GV-EVNVKE-----------------------------------------RKVLKST-----------------K----- 583 (1758)
T ss_pred cc-eeeeee-----------------------------------------eeecccC-----------------C-----
Confidence 00 000000 0000000 0
Q ss_pred ccccCcceeeeecCCccccccCCCCCCcceEEeecCCCCccccCCCcccCCCCceEEecCCCceEEEeeccCCCccEEEE
Q psy12394 987 MDHIQPKTECVRKDGQCVQAMFPTSPETKKIEAESGLGPLATQLPGSLADNKTGLVYLDHKDAMVDIAGTVNNPGAYVFV 1066 (1873)
Q Consensus 987 ~~~~~~~~~~~~~~g~c~~~~~~~~p~~~~~~~~~~~~~~~~~lp~~~~~~~~~~v~l~~~~~~~~~~~~v~~~g~Yv~v 1066 (1873)
+| +|+ +.+|+++......+.+...||..+.|.++
T Consensus 584 -------------------------------------------~~-sft--G~gf~r~~e~~~l~f~~~~ip~sm~Ydv~ 617 (1758)
T KOG0994|consen 584 -------------------------------------------LP-SFT--GKGFVRVPEGTTLEFTVPIIPPSMEYDVL 617 (1758)
T ss_pred -------------------------------------------Cc-ccc--ccceeecCCCceeeeecCCCCcccccchh
Confidence 00 111 22334443222222233568888999999
Q ss_pred EEeecCCCCCcc--ceEEEec-CeeeeeccccccCCCCCCcceeEecCCCc--------------eeeeecc--ceEEEE
Q psy12394 1067 VHFYQPDFPEFD--MDVLIQN-GQFYEAQLPVKHCPARSGCRAVVQQTNGN--------------RMFTLEK--NIVATF 1127 (1873)
Q Consensus 1067 i~y~~~~~~~~~--~~v~~~~-~~~~~g~~~~~~c~~~~~Cr~vv~~~~~~--------------~~~~l~~--~~~~~l 1127 (1873)
|+|. +..+..+ +.++|+. ++ |....|...+..++.+ ..+-|+. .++++|
T Consensus 618 ir~~-~~~~~~wen~~itvqrp~~-----------p~~g~c~~~~~~dd~~~~sl~p~sRyvv~~~~vClE~G~~Yklri 685 (1758)
T KOG0994|consen 618 IRYD-PRTPKLWENAKITVQRPGQ-----------PSLGRCGMAIPKDDRIPFSLPPGSRYVVAPNPVCLEAGKVYKLRI 685 (1758)
T ss_pred eecc-CCCcchhhhheEEeecCCC-----------CcccccccccccccccccccCCCceeeecCCchhhccCcceEEEE
Confidence 9986 4444322 4444442 11 2334444444432210 1122222 334444
Q ss_pred eCCC------CceeEEEEEEEeeCcccchhhccccccchhhHHH-hhcCCCcccccCCcchhcccccccceeeccCCCcC
Q psy12394 1128 KEPN------HKSVWLDYILLIPANEFNENIINELPYSRAKEFI-DVCGKNHFYLDNSTSEFCKKATFSMTISFLHEALP 1200 (1873)
Q Consensus 1128 ~~~~------~~~~~ld~v~lip~~~~~~~~l~~~~~~~~~~f~-~~C~~~~~~i~~~~~~~c~~~~~~~~~~~~~~~~~ 1200 (1873)
..+. +...+||+|+|+|..+-...|- ...+....+|. .+|....+..+..+++.|....+++++.+++++.+
T Consensus 686 ~~~~~~~~~esp~aLiDSl~L~P~~~~l~iFq-g~~~a~~~~yerYqC~~sl~~~k~~~~e~C~~l~~~lsa~l~n~a~~ 764 (1758)
T KOG0994|consen 686 YFERKSHDVESPYALIDSLVLIPRIDVLPIFQ-GSVLADKKTYERYQCESSLSDMKTKSDEVCQNLDNSLSALLHNGASM 764 (1758)
T ss_pred EeccccCCcccchhhhhhhhhccccccccccc-cchhhhhHHHHHhhhhhcccccccCcchhhhhhhhhHHHHHhcCccc
Confidence 3321 1234899999999865443332 22222244555 37833333345566889999999999999999999
Q ss_pred ccccCCCCcceeecccCceecCCCCcccCCCCCCCCCccCCC--CCcCCCCCC----CccccCCCceEEecCCccCCCCC
Q psy12394 1201 CQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFP--DCHPCNCPF----TAVCDSYTGECICAARVIGKKCD 1274 (1873)
Q Consensus 1201 c~c~~~gs~~~~c~~~~~~C~C~~~~~G~~C~~C~~g~~~~~--~C~~C~C~~----~~~C~~~tg~C~C~~~~~G~~C~ 1274 (1873)
|+|+++||+|.+|++.+|||+|+|||+||+|++||||+|||. +|++|+|+. ...||+.||+|+|.+|+.|++|+
T Consensus 765 CnCnptGSlS~vCn~~GGqCqCkPnVVGR~CdqCApGtyGFGPsGCk~CdC~~~Gs~~~~Cd~~tGQC~C~~g~ygrqCn 844 (1758)
T KOG0994|consen 765 CNCNPTGSLSSVCNPNGGQCQCKPNVVGRRCDQCAPGTYGFGPSGCKACDCNSIGSLDKYCDKITGQCQCRPGTYGRQCN 844 (1758)
T ss_pred cccCCCccccccccCCCceecccCccccccccccCCcccCcCCccCccccccccccccccccccccceeeccccchhhcc
Confidence 999999999999999999999999999999999999999995 899999986 35899999999999999999999
Q ss_pred cCCCCCcCCCCCCCCccccCCCCCCCCCCcccCCCcee-eccCCcccCCCcccCCCcccCC------CCCCccccCCCc-
Q psy12394 1275 QCEPNTFGYDPIIGCEECNCHPHGVNGTQQCDLFDGSC-SCKENIVGRTCDHCVEGHWSFP------YCVPCECDLRGT- 1346 (1873)
Q Consensus 1275 ~C~~g~~g~~~~~~C~~C~C~~~gs~~~~~C~~~~G~C-~C~~~~~G~~C~~C~~G~~g~p------~C~~C~C~~~gs- 1346 (1873)
+|+|||||| ..|+||+||.|. ..||+.+|.| .|+..++|..||+|..||||+| .|+||+|+.+-.
T Consensus 845 qCqpG~WgF---PeCr~CqCNgHA----~~Cd~~tGaCi~CqD~T~G~~CdrCl~GyyGdP~lg~g~~CrPCpCP~gp~S 917 (1758)
T KOG0994|consen 845 QCQPGYWGF---PECRPCQCNGHA----DTCDPITGACIDCQDSTTGHSCDRCLDGYYGDPRLGSGIGCRPCPCPDGPAS 917 (1758)
T ss_pred ccCCCccCC---CcCccccccCcc----cccCccccccccccccccccchhhhhccccCCcccCCCCCCCCCCCCCCCcc
Confidence 999999998 479999999986 5999999999 6999999999999999999999 499999997532
Q ss_pred ---cccccCCC----CceeeccCccccCCCCcCCCCccccCCCCCCCCccccccCCCcccccCccccccccccccccccC
Q psy12394 1347 ---TIDICNQG----TAECYCKKNVYGAACDVCKEGTFDIQADNVDGCTRCFCFGKTTKCSSSNLYRSQLVYCKPCECSG 1419 (1873)
Q Consensus 1347 ---~~~~Cd~~----~G~C~C~~~~~G~~Cd~C~~g~~g~~~~~~~gC~~C~C~g~~~~C~~~~~~~~~~~~~~~~~~~~ 1419 (1873)
.++.|... .-.|.|++||.|.+|+.|+++|||.+.. -..|.+|.| ++
T Consensus 918 g~~~A~sC~~d~~t~~ivC~C~~GY~G~RCe~CA~~~fGnP~~-GGtCq~CeC-------------------------~~ 971 (1758)
T KOG0994|consen 918 GRQHADSCYLDTRTQQIVCHCQEGYSGSRCEICADNHFGNPSE-GGTCQKCEC-------------------------SN 971 (1758)
T ss_pred chhccccccccccccceeeecccCccccchhhhcccccCCccc-CCccccccc-------------------------cC
Confidence 24566443 5689999999999999999999998754 444665555 68
Q ss_pred CCCCCCCCCccCCCCceeccccCCCCCccEEcCCCCCcCCCCCCCcccCCCCCCcccCccccCCCCCCCcccccCCCccc
Q psy12394 1420 NINRTDPGSCDSVTGECTGCLFNSAGDSCQYCAPGYYGNAVSLKNCVKCNCNPEGVLKTFAGCGSLPAGELCECKPKVQG 1499 (1873)
Q Consensus 1420 ~~~~~~~~~cd~~tG~C~~c~~nt~G~~c~~c~pg~yG~~~~~~~c~~c~c~~~~~~~~~~~~~~~~~~~~c~C~~~v~G 1499 (1873)
||+..+|++||+.||+||+|+|+|+|++|+.|++|||||++ ..+|+.|.|+-.|++.+ ++|+ ..+|||+|++||+|
T Consensus 972 NiD~~d~~aCD~~TG~CLkCL~hTeG~hCe~Ck~Gf~GdA~-~q~CqrC~Cn~LGTn~~-~~CD--r~tGQCpClpNv~G 1047 (1758)
T KOG0994|consen 972 NIDLYDPGACDVATGACLKCLYHTEGDHCEHCKDGFYGDAL-RQNCQRCVCNFLGTNST-CHCD--RFTGQCPCLPNVQG 1047 (1758)
T ss_pred CcCccCCCccchhhchhhhhhhcccccchhhccccchhHHH-HhhhhhheccccccCCc-cccc--cccCcCCCCccccc
Confidence 99999999999999999999999999999999999999998 56899999999999877 8888 78899999999999
Q ss_pred ccccccCCCCcCCCCCCCCCCccCCCCCCCCcCCcccccCCCCcccccCCCCcCCccccCCCccccCCCCcCCccccccC
Q psy12394 1500 RICDECRPLYWNLKASNPDGCEDCDCYTLGTIGGIKNCNPKSGQCVCKATAMNRKCDACVDGTYALQDNNLFGCTECACD 1579 (1873)
Q Consensus 1500 ~~Cd~C~~~y~~~~~~~~~~C~~C~C~~~~s~~g~~~c~~~tgqC~C~~g~~g~~Cd~C~~g~~~~~~~~~~gc~~c~C~ 1579 (1873)
.+||+|++++|++.. ++||++|+||+.+ + .+|+.+||||+|||||.||.|++|++-||++|++ +|.+|+|+
T Consensus 1048 ~~CDqCA~N~w~laS--G~GCe~C~Cd~~~---~-pqCN~ftGQCqCkpGfGGR~C~qCqel~WGdP~~---~C~aCdCd 1118 (1758)
T KOG0994|consen 1048 VRCDQCAENHWNLAS--GEGCEPCNCDPIG---G-PQCNEFTGQCQCKPGFGGRTCSQCQELYWGDPNE---KCRACDCD 1118 (1758)
T ss_pred ccccccccchhcccc--CCCCCccCCCccC---C-ccccccccceeccCCCCCcchhHHHHhhcCCCCC---CceecCCC
Confidence 999999999999964 8999999997632 2 5899999999999999999999999999999975 67777665
Q ss_pred C
Q psy12394 1580 I 1580 (1873)
Q Consensus 1580 ~ 1580 (1873)
+
T Consensus 1119 ~ 1119 (1758)
T KOG0994|consen 1119 P 1119 (1758)
T ss_pred C
Confidence 4
No 2
>KOG1836|consensus
Probab=100.00 E-value=5.8e-108 Score=1101.43 Aligned_cols=1306 Identities=28% Similarity=0.555 Sum_probs=932.4
Q ss_pred CCCCCCCCceEEEeeccCC--------------------------------------------------eEEEccCCCCC
Q psy12394 1 MGNSPRPAVWALERSADNG--------------------------------------------------ITISLLDHRPS 30 (1873)
Q Consensus 1 ~~~sprp~~~~~ers~d~g--------------------------------------------------i~~s~~~~rp~ 30 (1873)
|||||||++|+||||+|.+ |+||+|++|||
T Consensus 142 ~~~sprp~s~~l~k~~~~~g~~~p~q~~s~s~~~~~~~~~~~~l~~~~~d~~~~Ct~e~S~i~PL~ng~i~~s~l~grps 221 (1705)
T KOG1836|consen 142 KANSPRPESFGLYKSTDEDGPWCPWQFCSGSCRDCLSRPDRQALRGGENDDAAICTTEFSDISPLENGEIAFSTLEGRPS 221 (1705)
T ss_pred ccCCCCCccceeecccccCCCcCCceeecccCccccccCCcccccCCCCCccceeccccccCcccccchhhhhhhcCCCc
Confidence 6999999999999999944 99999999999
Q ss_pred CCCCCCchhhhhheeeeeeeEeeccccccccccccccCC-CCCcceeeeEEeeeeeeeeeeccCCCCCcCccCCCCCCcc
Q psy12394 31 MKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQ-DPTTTRRYFYSIKDISIGGRCRCNGHADVCDILDPEDPYH 109 (1873)
Q Consensus 31 ~~~~~~s~~l~~~~~at~ir~~~~~~~t~~~~~~~~~~~-~~~~~~~~yYai~d~~v~grC~C~gHa~~C~~~~~~~~~~ 109 (1873)
+.+|..||+||||++||+|||||+|++||+.|||++... ||+|+|+|||||+||+|+|||+|||||++|+..++..+
T Consensus 222 a~~f~~S~~L~ef~tat~ir~~l~r~~T~~~~l~~~~~~~dp~v~~~yyyaisdi~vggrc~cnGha~~c~~~~~~~~-- 299 (1705)
T KOG1836|consen 222 AYNFETSPELQEFTTATNIRIRLQRLNTFGLHLMSDEIFKDPKVTRSYYYAISDISVGGRCKCNGHASECDESEPQNL-- 299 (1705)
T ss_pred ccccCCCHHHHhhhccchhhhhhhhhcccchhhcchhhhcCCceeeeeeeeHhhccccceEEEccchhhcCcccCCcc--
Confidence 999999999999999999999999999999999997644 99999999999999999999999999999987755433
Q ss_pred ceeecCCCCCCCCCCCCCCCccCCcCCcCCCCCCCCccCCCCCCCCCccccCccccccCcccccCcCcCCCceeCCCCCC
Q psy12394 110 RICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSCEPCNCHGHADKCVYDPMVDEKRLSVDIQGNYEGGGVCQECRDN 189 (1873)
Q Consensus 110 ~~C~C~h~t~G~~Ce~c~p~~~~~p~~~~~~~~~~~C~~C~C~~~~~~C~~d~~~~~~~~s~~~~g~~~~GG~C~~C~~~ 189 (1873)
++|+|+|||+|..||+|.|+|+++||++++....++|+.|+|+++|.+|+||++++++. .+||+|++|+++
T Consensus 300 lvc~c~hNT~g~~ce~c~p~fn~rpw~~~ts~~~~Ec~~cnc~g~S~ec~~d~~l~r~~---------~~gg~c~~c~en 370 (1705)
T KOG1836|consen 300 LVCRCQHNTCGLDCERCLPFFNDRPWARATSQTANECEACNCNGRSEECYFDRELDRRT---------GGGGHCLDCREN 370 (1705)
T ss_pred ceeecccccccccccccccchhcchhhhhhhcccCceeeccCCCchHhhhhcHHHHHhh---------cCCccccCcccc
Confidence 79999999999999999999999999999999999999999999999999999998764 289999999999
Q ss_pred CCCCCCCCCCCCCccCCCCCCCCCCCCccCCCCCCCCCCeeecCCCceecCCCCcCCCCcccCCcccCCCCCCCC-----
Q psy12394 190 TEGINCHQRVAGYYRPYGKHLNETDVCQPCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPC----- 264 (1873)
Q Consensus 190 ~~G~~Ce~C~~g~~~~~~~~~~~~~~C~~C~C~~~~n~g~C~~~~g~C~C~~G~~G~~Ce~C~~g~~g~~~C~~c----- 264 (1873)
++|.|||+|..+|||...++ .+++|.+|.|++.++.+.+.+..|+|.|+|||+|.+|++|++||++++.+...
T Consensus 371 tag~~CerC~~~f~R~~~~~--~~~~c~~C~c~~~gsl~~~~~~~g~c~c~P~v~g~~cD~ca~g~~~~~~~~~~~~~~~ 448 (1705)
T KOG1836|consen 371 TAGVHCERCLLGFYRSRQVT--EPNPCRPCICNSAGSLSAQCDDTGRCQCKPGVTGQKCDRCAPGFYGLPACGCQLNQVS 448 (1705)
T ss_pred ccCcchhhccccccccCCCC--CCCcCcccCCCCccchhhhhccCCcceecccccccccCccCcccccCccccccccccc
Confidence 99999999999999998776 78999999999999999998889999999999999999999999999876654
Q ss_pred -CCCCCCCCCceecCCCCCcccCCCCCccCCCccCCCCCCCCC-----CCCCCCcCCCCCCCCcccCCCcccccCCCccc
Q psy12394 265 -KCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFP-----TCSPCECNAVGSLSDLCEVDSGNCTCRNNFAG 338 (1873)
Q Consensus 265 -~C~~~gt~~~~C~~~~G~~C~C~~g~~G~~Ce~C~~Gf~g~~-----~C~~c~C~~~gs~~~~C~~~~g~C~C~~G~~G 338 (1873)
.|...|+ ...|+ .| +|.||++++|.+|++|++||+.+. .|.+|.|.++++.-..++..++.|.+..+|.+
T Consensus 449 ~~~~~~g~-~~~c~--~g-~c~cK~nveg~~ce~ckpgyfnl~~~n~~gc~~C~c~g~s~~c~~~~~~t~~~~~~s~f~~ 524 (1705)
T KOG1836|consen 449 CQCLPAGS-LDNCD--SG-RCLCKENVEGTRCERCKPGYFNLEAENPLGCTPCFCSGHSSECDSADGYTGVCVILSNFHQ 524 (1705)
T ss_pred cccccccC-ccccC--Cc-eeeeccCccceeccccCCcccccCcCCCCCCccceeeccccccccccCcceeEEEeccccc
Confidence 3444443 12344 46 899999999999999999999872 39999999987666666666778999999999
Q ss_pred CCCccCCCCCcCCCCCCcCCCCCCCC-CceecCCCCeeeeCCCccCCCCccCCCCccCCCCCCCCCCCCCcEeeeeccCC
Q psy12394 339 RTCDSCADGYYNYPRCTSCQCAFHYA-TGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPA 417 (1873)
Q Consensus 339 ~~Ce~C~~G~~g~~~C~~C~c~~c~n-~g~C~~~~g~C~C~~G~tG~~Ce~C~~g~~~~~~C~~~~C~n~gtc~~~cd~~ 417 (1873)
..++.+..++.+.+.+..+.+++-.. ...+......+.++.+|.|.++..+...+.....+..+.+.-.+.-...+..
T Consensus 525 ~s~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~a~flG~q~~sy~~~l~~~~~~~~~~~~~~~~~~~l~ga- 603 (1705)
T KOG1836|consen 525 DSCGWVAVQRFGSEDDQQWSENPSGAAPSAQDNEPVYFQAPAKFLGDQRVSYGSELNFTLRVDACDTDPSGADVILEGA- 603 (1705)
T ss_pred ccccceeecccCCcccccccccccccccccccccceeEecchhhhcchhhcccccceeEEEEecccCCCcccceEEecC-
Confidence 99999999988866666655554322 2234445679999999999999875554443333443333222221111221
Q ss_pred CCCeeeCCCCcccCCCCcCCCCcccCCCcccccCCCcceeeeeecccccceEEEEeeeeeeeeecceeEEEEEeeccccC
Q psy12394 418 SGQQCPCKENYAGDHCDTCAQGYYNFPTCSQITLPDVPVIRVLMATITTHAVLLVNVTRLVLCLTCVKLILAIVRAEITL 497 (1873)
Q Consensus 418 ~g~~C~C~~g~~G~~Ce~C~~g~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (1873)
+...|.++..+.|..|..+..+++.++......-
T Consensus 604 ~~~~~s~~~~~~g~~~~~~~~~~~~~~~~~~~~~---------------------------------------------- 637 (1705)
T KOG1836|consen 604 GKLNCSTPLQAKGNQCSEEAVGFYLFRLHEVTIY---------------------------------------------- 637 (1705)
T ss_pred CccccccccccccCCCcccccccceecccccccc----------------------------------------------
Confidence 2147888899999999887777776543211000
Q ss_pred CCcceeeeeeeeeeceeeEEeehhHHHHhhccccccCcccc--cccccccccccCCccccc-CCCCCcccccccCCCcee
Q psy12394 498 PDVPVIRVLMATITTHAVLFVIVTSEVQRLVSVIKPMDHVY--VRKDTRALAVTNARQVCN-CDIRGTEAGICDKTNGSC 574 (1873)
Q Consensus 498 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~C~-C~~~gt~~~~C~~~~g~C 574 (1873)
.+...+...++.+++..+..++.-. .......+....-..... +. .++..+.+.++|
T Consensus 638 ----------------~~~~~~~~~~~~~~l~~~~r~~i~~~~~~~~~~~~~~v~le~a~~~~~----~~~~~~~wve~c 697 (1705)
T KOG1836|consen 638 ----------------KWAPSLRLFDFRRLLQNLTRGRIRGTYSDACLGYLDNVTLESARPLGD----GAGATDTWVEQC 697 (1705)
T ss_pred ----------------ccccccChhhHhhhhccccccceEEEEcccccccccccchhcccccCC----CCCCccchhhhc
Confidence 0000011111222221111111000 000000000000000001 11 134566788899
Q ss_pred cCCCCCCCCCCccCCCCccCCC-------CCcccCCCCCCcCCccCCCC-CcccCCCCccCCCCCCCCCCcCCCC-----
Q psy12394 575 LCKEGYTGARCDQCKAGYYGYP-------DCKLCGCSAVGSSSTACDVS-GKCPCLVNFGGKTCSQCSPGFYQYP----- 641 (1873)
Q Consensus 575 ~C~~G~~G~~Ce~C~~g~~~~~-------~C~~c~C~~~Gt~~~~C~~~-g~C~C~~G~~G~~Ce~C~~g~~g~~----- 641 (1873)
.|++||+|.+||.|++||+++. .|.+|+|+++ ..+||.. |+|.|.+...|.+|++|..|||+.+
T Consensus 698 ~C~~g~tG~~Ce~C~~gfrr~~~~~~~~~~c~~C~cngh---~~~Cd~~tG~C~C~~~t~G~~C~~C~~GfYg~~~~~~~ 774 (1705)
T KOG1836|consen 698 TCPVGYTGQFCESCAPGFRRLSPQLGPFCPCIPCDCNGH---SNICDPRTGQCKCKHNTFGGQCAQCVDGFYGLPDLGTS 774 (1705)
T ss_pred cCCCCcccchhhhcchhhhcccccCCCCCcccccccCCc---cccccCCCCceecccCCCCCchhhhcCCCCCccccCCC
Confidence 9999999999999999999752 4677777777 5689975 9999999999999999999999976
Q ss_pred -CCccCCCCCCCCCCcccCC-Cccee-cCCCCCCCCCcccCCCccCCC--------CcccCCCCCCCCCC--cccCC-CC
Q psy12394 642 -QCKACNCDSHGNIGVSCDD-DGKCQ-CEKNFGGDRCERCKEGLYNFP--------ICEACNCDSHGNIG--VSCDD-DG 707 (1873)
Q Consensus 642 -~C~~c~C~~~~~~gg~C~~-~g~C~-C~~g~~G~~Ce~C~~g~~g~~--------~C~~C~C~~~g~~~--~~C~~-~g 707 (1873)
+|++|+|++.+..+.+++. ++.|. |++||+|.+|+.|.++|++.+ .|++|+|+.+..-. +.|+. +|
T Consensus 775 ~dC~~C~Cp~~~~~~~~~~~~~~iCk~Cp~gytG~rCe~c~dgyfg~p~~~~~~~~~c~~c~c~~n~dp~~~g~c~~~tg 854 (1705)
T KOG1836|consen 775 GDCQPCPCPNGGACGQTPEILEVVCKNCPPGYTGLRCEECADGYFGNPLGHDGDVRPCQSCQCNFNVDPNAFGNCNRLTG 854 (1705)
T ss_pred CCCccCCCCCChhhcCcCcccceecCCCCCCCcccccccCCCccccCCCCCCCCcccCccceeccccCcccccccccccc
Confidence 4999999997777777755 88997 999999999999999999886 48999998755433 67887 99
Q ss_pred ce-eeCCCcccCCCCcCCCCCccCC-------CCcCCCCCCCCCccCccccccCCCCCceecCCCcccCCccccCCCCcC
Q psy12394 708 KC-QCEKNFGGDRCERCKEGLYNFP-------ICEECNCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDECRPLYWN 779 (1873)
Q Consensus 708 ~C-~C~~g~~G~~Ce~C~~g~~g~p-------~C~~C~C~~~Gs~~~~~~C~~~~~~g~C~C~~g~~G~~C~~C~~g~~g 779 (1873)
.| .|..+.+|.+||.|+++|||++ .|..|.|.+.|+......|+..+ |+|.|+++++|..|..|.+||||
T Consensus 855 ~c~~ci~nT~g~~cd~c~~g~~gd~l~~~p~~~c~~c~c~p~gs~~~~~~c~~~t--GQcec~~~v~g~~c~~c~~g~fn 932 (1705)
T KOG1836|consen 855 ECLKCIHNTAGEYCDLCKEGYFGDPLAPNPEDKCFACGCVPAGSELPSLTCNPVT--GQCECKPNVEGRDCLYCFKGFFN 932 (1705)
T ss_pred ceeeccCCcccccccccccCccccccCCCcCCccccccCccCCcccccccCCCcc--cceeccCCCCccccccccccccc
Confidence 99 8999999999999999999987 48899999999986655688776 99999999999999999999999
Q ss_pred CCCCCCCCCCcCcCCCCCcccCCcccCCCCCceecCCCCccCCCCCCCCCCccCcCCCCCCCccCcCCCCCcccccccCC
Q psy12394 780 LKASNPDGCEDCDCYTLGTIGGIKNCNPKSGQCVCKATAMNRKCDACMDGTYALQDNNLFGCTECACDIGGSINNLCNKD 859 (1873)
Q Consensus 780 ~~~~~~~~C~~c~C~~~Gt~~~~~~C~~~tg~C~C~~g~~G~~C~~C~~g~~g~~~~~~~gC~~C~C~~gg~~~~~C~~~ 859 (1873)
++ ...+|.+|.|+..|+.+. .|+..+|||.|+++++|.+|++|.+.+|+++. .||..|.|+.-|+++.+|+..
T Consensus 933 l~--s~~gC~~c~c~~~gs~~~--~c~~~tGqc~c~~gVtgqrc~qc~~~~~~~~~---~gc~~c~c~~~Gs~~~qc~~~ 1005 (1705)
T KOG1836|consen 933 LN--SGVGCEPCNCDPTGSESS--DCDVGTGQCYCRPGVTGQRCDQCETYHFGFQT---EGCGLCECDPLGSRGFQCDPE 1005 (1705)
T ss_pred cC--CCCCcccccccccccccc--cccccCCceeeecCccccccCccccCcccccc---cCCcceecccCCcccceeccc
Confidence 98 457999999999999874 89999999999999999999999999999975 799999999999999999998
Q ss_pred CCCCCCCccccccCC---CCc------------------------eeeeeeeecCCCeeEEEEeecCCCCCCCCceEEEe
Q psy12394 860 LSALNSEELPLLNKD---QPK------------------------LRFDMRITKPGPHVLVLSYVTPGPHTQDSAVIQLE 912 (1873)
Q Consensus 860 ~~~~~~~~~~~~~~~---q~~------------------------~~~~~~~~~~g~y~~~l~y~~~~~~~~~~~~~~~~ 912 (1873)
+|++ ...+.+.++ ++. ..++..+...+.+.+.+.+........ .....+.
T Consensus 1006 ~G~c--~c~~~~~g~~c~~c~~~~~~~~~~~~~~~~c~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 1082 (1705)
T KOG1836|consen 1006 DGQC--PCRPGFEGRRCDQCEEGFFGNAQGCSPCPGCYALIQITVGQLKKRLPELDGYLVKIIDGSAEDPDT-EFEGGLK 1082 (1705)
T ss_pred CCee--eecCCCCCcccccccCCccccccCCCCCcceeeccchHHHHHhhhhhcccceeEeecccCCCCCCc-hhhcccC
Confidence 8764 111222111 000 001111222333333333322111000 0000000
Q ss_pred ecccccccccceEeecCCC-CCCcceeeecCCCceEEEEeccCceEEEEeccCCCCCCccceEEEEEeeccCcccccccC
Q psy12394 913 ASSQTTVERGNVRLHDCPY-TTPCRATVLDKQGKVSVFEFDTNYISVELTADENPTNNASAAIQKIVAIPEAKWSMDHIQ 991 (1873)
Q Consensus 913 ~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~~~~~~~~ 991 (1873)
.... .+..+...+..+++ ...++..+........+.... ....+..++.. ..++.++...++.......+..+
T Consensus 1083 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~----~~~~~l~~~n~l~~~~~~~e~~~ 1156 (1705)
T KOG1836|consen 1083 EADR-ALQDGLRAAHPCLGNATKTLGEQRKDVTGQCTSKQS-GLDGLKCDACQ----ASRFGLDAQNLLGCSETIIEQAS 1156 (1705)
T ss_pred CccH-HHHhhhhhccccccccccccceeecccccceeeecc-cccccccchhh----hhhhhhhhccccccccccccccC
Confidence 0000 00111111222222 111112221111111111110 00011111100 01122222222222221111111
Q ss_pred cceeeeecC--CccccccCCCCCCcceE-----Ee--ec-CCCC---------ccccCCCcccCCC--CceEEecCCCce
Q psy12394 992 PKTECVRKD--GQCVQAMFPTSPETKKI-----EA--ES-GLGP---------LATQLPGSLADNK--TGLVYLDHKDAM 1050 (1873)
Q Consensus 992 ~~~~~~~~~--g~c~~~~~~~~p~~~~~-----~~--~~-~~~~---------~~~~lp~~~~~~~--~~~v~l~~~~~~ 1050 (1873)
+...++... ..++...+........+ ++ +. .+.. ...+++.....+. ..++....-+..
T Consensus 1157 ~e~~~~~~sl~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1236 (1705)
T KOG1836|consen 1157 FELQCAKSSLSANLLLPQYDSGNQPNSLSDLAVEARALAESHKQEASEIQYMSGLALDPSTQASNLILAALVDGSKLGSQ 1236 (1705)
T ss_pred ccceehhhhhhhhccccCCCCCCCCcchhhccceeeccccccccccchhhhhcccccccccchhhhhHHhhcccccccee
Confidence 111222111 12222222211111110 00 00 0000 0001111111111 112222233556
Q ss_pred EEEeeccCCCccEEEEEEeecCCCCCccceEEEecCeeeeecc---------ccccCCCCCCcceeEecCCCc--eeeee
Q psy12394 1051 VDIAGTVNNPGAYVFVVHFYQPDFPEFDMDVLIQNGQFYEAQL---------PVKHCPARSGCRAVVQQTNGN--RMFTL 1119 (1873)
Q Consensus 1051 ~~~~~~v~~~g~Yv~vi~y~~~~~~~~~~~v~~~~~~~~~g~~---------~~~~c~~~~~Cr~vv~~~~~~--~~~~l 1119 (1873)
+.+.+.|+..+++.+.++.+.++.....++++|.+...++..+ +..+.++...|+.+.+..... ..+..
T Consensus 1237 ~~~~~~v~e~~~k~~~~~~~~~~~~~~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~l~~~~~ 1316 (1705)
T KOG1836|consen 1237 VPTKTKVPELGLKLFYVKGIQPDLTTANFEVLISADRVYQLALLSLVEVSRTPPEFDPSLLGCRALRRKERADNLSLLAK 1316 (1705)
T ss_pred cccccccccccceeEeeecccccccccchhhhhccchhhhhhhhhhhhhhcccccccccccccccccccchhhhccccch
Confidence 6667779999999999999999988888888888755554433 345777788888887763211 11111
Q ss_pred ccceEE--EEeCCCCceeEEEEEEEeeCcccchhhccccccchhhHHHhhcCCCcccccCCc-chhcccccccceeeccC
Q psy12394 1120 EKNIVA--TFKEPNHKSVWLDYILLIPANEFNENIINELPYSRAKEFIDVCGKNHFYLDNST-SEFCKKATFSMTISFLH 1196 (1873)
Q Consensus 1120 ~~~~~~--~l~~~~~~~~~ld~v~lip~~~~~~~~l~~~~~~~~~~f~~~C~~~~~~i~~~~-~~~c~~~~~~~~~~~~~ 1196 (1873)
.+...+ +........+|++.++.+|..............+.+.+++..+......+.... +-+.+...+.....+..
T Consensus 1317 ~~~~~~~~~~~~~~~~~~~~~~~l~~pe~~~~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 1396 (1705)
T KOG1836|consen 1317 ADLKTLTSTGGNSKKAPIWAQTLLQVPERQQPPSDQLLLRADLAREFAQPAVYAGLATSYEASSLLKKLEGFKLQFQFRK 1396 (1705)
T ss_pred hhHHHHHHHhcccccccchhhhhhhcccccCCccccccccccchhhhhhhhhhcccccchhhHHHHhhhhccccccccch
Confidence 111111 111112335567777778876654333323333444444444443333333333 34566666777777777
Q ss_pred CCcCccccCCCCcceeecccCceecCCCCcccCCCCCCCCCccCCCCC-cCCCCCCCccccCCCceEEecCCccCCCCCc
Q psy12394 1197 EALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDC-HPCNCPFTAVCDSYTGECICAARVIGKKCDQ 1275 (1873)
Q Consensus 1197 ~~~~c~c~~~gs~~~~c~~~~~~C~C~~~~~G~~C~~C~~g~~~~~~C-~~C~C~~~~~C~~~tg~C~C~~~~~G~~C~~ 1275 (1873)
.+..+.|...+..+..+..+...+.|+.+.+|+.|++|+.+||+++.+ ..+.|.....++..+++|.+++.+.+..|+.
T Consensus 1397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~k~~a~e~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 1476 (1705)
T KOG1836|consen 1397 DAASCACHGVGFSSQTCEDFGGLQLCAGRLLGRACERCAEGKYGAPEALHEVACGAERSAGRLVRDCNCPSSYEGNLCWE 1476 (1705)
T ss_pred hhcccccccccccccchhhhhhhhhhhhhhhcchhhhhhhhhccCcccceeeecccccccccccccccCCCCcccccccc
Confidence 777888888888888999999999999999999999999999999988 8899998899999999999999999999999
Q ss_pred CCCCCcCCCCCCCCccccCCCCCC--CCCCcccCCCceeeccCCcccCCCcccCCCcccCCCCCCccccCCCccccccCC
Q psy12394 1276 CEPNTFGYDPIIGCEECNCHPHGV--NGTQQCDLFDGSCSCKENIVGRTCDHCVEGHWSFPYCVPCECDLRGTTIDICNQ 1353 (1873)
Q Consensus 1276 C~~g~~g~~~~~~C~~C~C~~~gs--~~~~~C~~~~G~C~C~~~~~G~~C~~C~~G~~g~p~C~~C~C~~~gs~~~~Cd~ 1353 (1873)
|++..|+.++..|+..+.+..... .....|++..+++.+++.-.|+.|++|..|+.+++.|..+.|...+.....+++
T Consensus 1477 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1556 (1705)
T KOG1836|consen 1477 CQAPNYLGGPVEGCDECKCQEPDIQSFTGCLCDTQLGQAKCRSKSAGRSCDKCLEGLLGGLLCSGCGCHVVLNALGLLEP 1556 (1705)
T ss_pred ccccccccCCCCCchhhccccCCcccccccccchhcccccccccccCceecccccccccceeeccCCceeecccccccch
Confidence 999999999999998887774211 124688999999999999999999999999999999999999998888899999
Q ss_pred CCceeeccCccc---cCCCCcCCCCccccCCCCCCCCccccccCCCcccccCccccccccc
Q psy12394 1354 GTAECYCKKNVY---GAACDVCKEGTFDIQADNVDGCTRCFCFGKTTKCSSSNLYRSQLVY 1411 (1873)
Q Consensus 1354 ~~G~C~C~~~~~---G~~Cd~C~~g~~g~~~~~~~gC~~C~C~g~~~~C~~~~~~~~~~~~ 1411 (1873)
...++.++.++. +..+..+..+.+-+...++.+++.++++++...++++...+..+..
T Consensus 1557 ~~~~~~~~~~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~gi~~~~~s~~~~~~~~~~ 1617 (1705)
T KOG1836|consen 1557 AFALVFSERNVSSTGGLTHHLSKLGTELLVQENPIGVTEKFESGITDLSTSSTPIVSLLPG 1617 (1705)
T ss_pred hHHhhhcccccccCCCccccccccchHHhhhhcccccchhhhhhhhhhhhcchhhhhhcCC
Confidence 999999999999 9999999999999999999999999999999999998877665543
No 3
>KOG0994|consensus
Probab=100.00 E-value=3.2e-73 Score=695.03 Aligned_cols=503 Identities=34% Similarity=0.847 Sum_probs=426.6
Q ss_pred cccCceecCCCCcccCCCCCCCCCccCCCC----------CcCCCCCCCc-cccC-----------CCceEE-ecCCccC
Q psy12394 1214 EQFGGQCQCKPNVIGRRCEMCATGYYGFPD----------CHPCNCPFTA-VCDS-----------YTGECI-CAARVIG 1270 (1873)
Q Consensus 1214 ~~~~~~C~C~~~~~G~~C~~C~~g~~~~~~----------C~~C~C~~~~-~C~~-----------~tg~C~-C~~~~~G 1270 (1873)
+.+-|.|.|++|+.|.+||+|++-|...|| |+.|+|+.|+ +|+- ..|.|. |.+|+.|
T Consensus 296 ~mVHG~C~C~HNT~G~nCE~C~~fYnDlPWrpAeG~~~neCrkC~CNgHa~sCHFD~aV~~ASG~vSGGVCDdCqHNT~G 375 (1758)
T KOG0994|consen 296 HMVHGRCMCKHNTAGLNCEHCAPFYNDLPWRPAEGKTSNECRKCECNGHADTCHFDMAVYEASGNVSGGVCDDCQHNTEG 375 (1758)
T ss_pred ceecceeEeccCCCCCChHHhhHhhcCCCCCccCCCCcccccccCCCCCcccccccHHHHhhcCCcccccCccccccccc
Confidence 445689999999999999999999887774 9999999765 6652 356786 9999999
Q ss_pred CCCCcCCCCCcCCCC-----CCCCccccCCCCCCCCCC----cccCCC----ceeeccCCcccCCCcccCCCcccCC---
Q psy12394 1271 KKCDQCEPNTFGYDP-----IIGCEECNCHPHGVNGTQ----QCDLFD----GSCSCKENIVGRTCDHCVEGHWSFP--- 1334 (1873)
Q Consensus 1271 ~~C~~C~~g~~g~~~-----~~~C~~C~C~~~gs~~~~----~C~~~~----G~C~C~~~~~G~~C~~C~~G~~g~p--- 1334 (1873)
.+||+|.|.||.... ...|+||+|++.||.... .||+.+ |||.||+++.|++|++|++||||+.
T Consensus 376 ~~CE~CkP~fYRdprr~i~~p~vC~pC~CdP~GS~~~g~cds~~Dp~~GlvaGqC~CK~~V~G~RCd~Ck~Gywgl~~~d 455 (1758)
T KOG0994|consen 376 QNCERCKPFFYRDPRRDISDPDVCKPCECDPAGSQDGGICDSFCDPSTGLVAGQCRCKEHVAGRRCDRCKDGYWGLTSAD 455 (1758)
T ss_pred cchhhcCcccccCCCCCCCCccccccccCCCCcCcCCCccccccCccccccccccccccCcCccccchhccCcccCccCC
Confidence 999999999998421 235999999999994323 356666 9999999999999999999999986
Q ss_pred --CCCCccccCCCccccc-cCCCCceeeccCccccCCCCcCCCCccccCCCCCCCCccccccCCCcccccCccccccccc
Q psy12394 1335 --YCVPCECDLRGTTIDI-CNQGTAECYCKKNVYGAACDVCKEGTFDIQADNVDGCTRCFCFGKTTKCSSSNLYRSQLVY 1411 (1873)
Q Consensus 1335 --~C~~C~C~~~gs~~~~-Cd~~~G~C~C~~~~~G~~Cd~C~~g~~g~~~~~~~gC~~C~C~g~~~~C~~~~~~~~~~~~ 1411 (1873)
.|++|.|++.||.... ||+.||.|.||+.|+|..||+|.|.+|+|+. +++||.+|.|.....
T Consensus 456 p~GC~~C~CN~lGT~~~s~CD~~TG~C~ckrlvTg~~cdqclPeh~gLs~-~~~gc~~cdcd~GGs-------------- 520 (1758)
T KOG0994|consen 456 PYGCRPCDCNPLGTRNGSGCDPETGDCYCKRLVTGIDCDQCLPEHWGLSN-DLEGCRPCDCDQGGS-------------- 520 (1758)
T ss_pred CCCccccccccccccCCCCCCCCCCceEeeccccCCCccccCccccccCC-CCCCCcccccCCCCC--------------
Confidence 4999999999998766 9999999999999999999999999999985 689999999975421
Q ss_pred cccccccCCCCCCCCCCccCCCCceeccccCCCCCccEEcCCCCCcCCCC------------------------------
Q psy12394 1412 CKPCECSGNINRTDPGSCDSVTGECTGCLFNSAGDSCQYCAPGYYGNAVS------------------------------ 1461 (1873)
Q Consensus 1412 ~~~~~~~~~~~~~~~~~cd~~tG~C~~c~~nt~G~~c~~c~pg~yG~~~~------------------------------ 1461 (1873)
-..+|+..+|+| .|..++.|++|+.-.|+||--.+.
T Consensus 521 -------------~d~sc~~~sGqC-~CRe~~~GR~c~~~~~~yy~~~l~h~i~eAe~~~~~~~~~v~~r~~~~~~~~~s 586 (1758)
T KOG0994|consen 521 -------------YDNSCDLHSGQC-ECREHMLGRRCEQVCPGYYSPVLDHYIYEAEDAGTGVEVNVKERKVLKSTKLPS 586 (1758)
T ss_pred -------------CCcccccccCcc-ccccccccccccccCCcccccccchhhhhhhhccccceeeeeeeeecccCCCcc
Confidence 113688888888 888888888888888888721110
Q ss_pred --------------------------------------------------CC----------------------------
Q psy12394 1462 --------------------------------------------------LK---------------------------- 1463 (1873)
Q Consensus 1462 --------------------------------------------------~~---------------------------- 1463 (1873)
.|
T Consensus 587 ftG~gf~r~~e~~~l~f~~~~ip~sm~Ydv~ir~~~~~~~~wen~~itvqrp~~p~~g~c~~~~~~dd~~~~sl~p~sRy 666 (1758)
T KOG0994|consen 587 FTGKGFVRVPEGTTLEFTVPIIPPSMEYDVLIRYDPRTPKLWENAKITVQRPGQPSLGRCGMAIPKDDRIPFSLPPGSRY 666 (1758)
T ss_pred ccccceeecCCCceeeeecCCCCcccccchheeccCCCcchhhhheEEeecCCCCcccccccccccccccccccCCCcee
Confidence 00
Q ss_pred --------------------------------------------------------------------------------
Q psy12394 1464 -------------------------------------------------------------------------------- 1463 (1873)
Q Consensus 1464 -------------------------------------------------------------------------------- 1463 (1873)
T Consensus 667 vv~~~~vClE~G~~Yklri~~~~~~~~~esp~aLiDSl~L~P~~~~l~iFqg~~~a~~~~yerYqC~~sl~~~k~~~~e~ 746 (1758)
T KOG0994|consen 667 VVAPNPVCLEAGKVYKLRIYFERKSHDVESPYALIDSLVLIPRIDVLPIFQGSVLADKKTYERYQCESSLSDMKTKSDEV 746 (1758)
T ss_pred eecCCchhhccCcceEEEEEeccccCCcccchhhhhhhhhccccccccccccchhhhhHHHHHhhhhhcccccccCcchh
Confidence
Q ss_pred --------------CcccCCCCCCcccCccccCCCCCCCcccccCCCcccccccccCCCCcCCCCCCCCCCccCCCCCCC
Q psy12394 1464 --------------NCVKCNCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDECRPLYWNLKASNPDGCEDCDCYTLG 1529 (1873)
Q Consensus 1464 --------------~c~~c~c~~~~~~~~~~~~~~~~~~~~c~C~~~v~G~~Cd~C~~~y~~~~~~~~~~C~~C~C~~~~ 1529 (1873)
.=..|+|+|.|+....+ + +..|+|.|||||.|++||+|+||+|++. +.||++|+|+..+
T Consensus 747 C~~l~~~lsa~l~n~a~~CnCnptGSlS~vC--n--~~GGqCqCkPnVVGR~CdqCApGtyGFG---PsGCk~CdC~~~G 819 (1758)
T KOG0994|consen 747 CQNLDNSLSALLHNGASMCNCNPTGSLSSVC--N--PNGGQCQCKPNVVGRRCDQCAPGTYGFG---PSGCKACDCNSIG 819 (1758)
T ss_pred hhhhhhhHHHHHhcCccccccCCCccccccc--c--CCCceecccCccccccccccCCcccCcC---CccCccccccccc
Confidence 00124445544444332 2 6789999999999999999999999997 5699999999999
Q ss_pred CcCCcccccCCCCcccccCCCCcCCccccCCCccccCCCCcCCccccccCCCccccccccccccccccEEEeeeeecccc
Q psy12394 1530 TIGGIKNCNPKSGQCVCKATAMNRKCDACVDGTYALQDNNLFGCTECACDIGGSINNLCNKSLIWMSSFRMVSFTKLSSQ 1609 (1873)
Q Consensus 1530 s~~g~~~c~~~tgqC~C~~g~~g~~Cd~C~~g~~~~~~~~~~gc~~c~C~~~~s~~~~c~~~~~~~~~v~l~e~~~l~~~ 1609 (1873)
+.+. -||+.||||.|.+|+.|++|++|++|||+.|. |..|.|+.|-...+| .
T Consensus 820 s~~~--~Cd~~tGQC~C~~g~ygrqCnqCqpG~WgFPe-----Cr~CqCNgHA~~Cd~---~------------------ 871 (1758)
T KOG0994|consen 820 SLDK--YCDKITGQCQCRPGTYGRQCNQCQPGYWGFPE-----CRPCQCNGHADTCDP---I------------------ 871 (1758)
T ss_pred cccc--cccccccceeeccccchhhccccCCCccCCCc-----CccccccCcccccCc---c------------------
Confidence 9875 79999999999999999999999999999886 899999998744343 2
Q ss_pred cccccccceeecccccCCCccccceEeccCccccccccCCCCCCCCCccccCCCCCcCCCCCCCccccccccCCCCcCCC
Q psy12394 1610 SNIVLPGLVVEQFLNLCPTEFDMDVLIQNGQFYEAQLPDCQHNTLGDQCEQCQPGYHGNATQGTMADCLICACPLPITSN 1689 (1873)
Q Consensus 1610 ~~~~~~~~~~~~~~~~cp~~y~g~~~~~~g~~~g~c~~~C~~~t~G~~Ce~C~~gy~g~a~~g~~~~c~~c~c~~~~~~n 1689 (1873)
.|.|+ +|+..|+|++||+|..||||++..|.-..|++|+||-...+.
T Consensus 872 --------------------------------tGaCi-~CqD~T~G~~CdrCl~GyyGdP~lg~g~~CrPCpCP~gp~Sg 918 (1758)
T KOG0994|consen 872 --------------------------------TGACI-DCQDSTTGHSCDRCLDGYYGDPRLGSGIGCRPCPCPDGPASG 918 (1758)
T ss_pred --------------------------------ccccc-cccccccccchhhhhccccCCcccCCCCCCCCCCCCCCCccc
Confidence 27887 899999999999999999999999999999999999876554
Q ss_pred -ccccCccccCCCccccCCccccccCCCCCcCCCCCCCCCCCCccccc-------------CCCCCCCCCccccChhhhc
Q psy12394 1690 -NFASGCDVSEDGCHMNGTLNFYCEPTSGQQCPCKENYAGDHCDTCAQ-------------ACNCHGHADKCVYDPMVDE 1755 (1873)
Q Consensus 1690 -~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~C~C~~gy~G~sCe~Ca~-------------~c~c~g~~~~c~~~~~~~~ 1755 (1873)
-||.+|.+.... ..+.|.|++||+|.+||.||+ +|+|++|.|. +
T Consensus 919 ~~~A~sC~~d~~t--------------~~ivC~C~~GY~G~RCe~CA~~~fGnP~~GGtCq~CeC~~NiD~--~------ 976 (1758)
T KOG0994|consen 919 RQHADSCYLDTRT--------------QQIVCHCQEGYSGSRCEICADNHFGNPSEGGTCQKCECSNNIDL--Y------ 976 (1758)
T ss_pred hhccccccccccc--------------cceeeecccCccccchhhhcccccCCcccCCccccccccCCcCc--c------
Confidence 568888766432 358899999999999999999 6999999998 3
Q ss_pred ccccccccCccCCCeecCCCCCCCCCCCCcccCCCccccCCCCCCCCC--------------Cc---ceeeeecCCCCCC
Q psy12394 1756 KRLSVDIQGNYEGGGVCQECRDNTEGINCHQCVAGYYRPYGKHLNETD--------------VC---QRQCLCQPRVTGQ 1818 (1873)
Q Consensus 1756 ~~~~c~~~~~~~~~g~c~~C~~nt~G~~C~~C~~g~~~~~~~~~~~~~--------------~c---~g~c~c~~~~~g~ 1818 (1873)
+.++| |..||.|++|+|+|+|.||+.|++||| |||+.+.. .| ||||.|.|+|.|.
T Consensus 977 d~~aC-----D~~TG~CLkCL~hTeG~hCe~Ck~Gf~---GdA~~q~CqrC~Cn~LGTn~~~~CDr~tGQCpClpNv~G~ 1048 (1758)
T KOG0994|consen 977 DPGAC-----DVATGACLKCLYHTEGDHCEHCKDGFY---GDALRQNCQRCVCNFLGTNSTCHCDRFTGQCPCLPNVQGV 1048 (1758)
T ss_pred CCCcc-----chhhchhhhhhhcccccchhhccccch---hHHHHhhhhhheccccccCCccccccccCcCCCCcccccc
Confidence 46789 899999999999999999999999999 99987553 34 9999999999999
Q ss_pred CCCCCCcCCCCCccCCCCCCCCCCCccCCCCc
Q psy12394 1819 TCNQPLQAHYYPTLHHYQFEIEDGHTPAFSPS 1850 (1873)
Q Consensus 1819 ~c~~c~~~~~~~~~~~~~~~~~~~c~~c~~~~ 1850 (1873)
+|||||+ .||...++.+|.||+|..
T Consensus 1049 ~CDqCA~-------N~w~laSG~GCe~C~Cd~ 1073 (1758)
T KOG0994|consen 1049 RCDQCAE-------NHWNLASGEGCEPCNCDP 1073 (1758)
T ss_pred ccccccc-------chhccccCCCCCccCCCc
Confidence 9999999 999999999999999976
No 4
>KOG1836|consensus
Probab=100.00 E-value=1e-56 Score=606.18 Aligned_cols=685 Identities=29% Similarity=0.675 Sum_probs=505.4
Q ss_pred cccCCCCccCCCCCCCCCCcCCC----------CCCccCCCCCCCCCCcccCC----------Ccce-ecCCCCCCCCCc
Q psy12394 618 KCPCLVNFGGKTCSQCSPGFYQY----------PQCKACNCDSHGNIGVSCDD----------DGKC-QCEKNFGGDRCE 676 (1873)
Q Consensus 618 ~C~C~~G~~G~~Ce~C~~g~~g~----------~~C~~c~C~~~~~~gg~C~~----------~g~C-~C~~g~~G~~Ce 676 (1873)
+|.|.+++.|..||+|.+.|... .+|..|+|.+++ -.|.- -|.| .|+.++.|.+||
T Consensus 301 vc~c~hNT~g~~ce~c~p~fn~rpw~~~ts~~~~Ec~~cnc~g~S---~ec~~d~~l~r~~~~gg~c~~c~entag~~Ce 377 (1705)
T KOG1836|consen 301 VCRCQHNTCGLDCERCLPFFNDRPWARATSQTANECEACNCNGRS---EECYFDRELDRRTGGGGHCLDCRENTAGVHCE 377 (1705)
T ss_pred eeecccccccccccccccchhcchhhhhhhcccCceeeccCCCch---HhhhhcHHHHHhhcCCccccCccccccCcchh
Confidence 89999999999999999987543 379999999854 34422 2467 589999999999
Q ss_pred ccCCCccCCC------CcccCCCCCCCCCCcccCCCCceeeCCCcccCCCCcCCCCCccCCCC--cC----CCCCCCCCc
Q psy12394 677 RCKEGLYNFP------ICEACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCERCKEGLYNFPIC--EE----CNCNPEGVL 744 (1873)
Q Consensus 677 ~C~~g~~g~~------~C~~C~C~~~g~~~~~C~~~g~C~C~~g~~G~~Ce~C~~g~~g~p~C--~~----C~C~~~Gs~ 744 (1873)
+|..+||... .|++|.|+..++.+..|+++|+|.|+|+++|.+||+|++|||+.+.+ +. |.|.+.|+.
T Consensus 378 rC~~~f~R~~~~~~~~~c~~C~c~~~gsl~~~~~~~g~c~c~P~v~g~~cD~ca~g~~~~~~~~~~~~~~~~~~~~~g~~ 457 (1705)
T KOG1836|consen 378 RCLLGFYRSRQVTEPNPCRPCICNSAGSLSAQCDDTGRCQCKPGVTGQKCDRCAPGFYGLPACGCQLNQVSCQCLPAGSL 457 (1705)
T ss_pred hccccccccCCCCCCCcCcccCCCCccchhhhhccCCcceecccccccccCccCcccccCccccccccccccccccccCc
Confidence 9999999766 49999999999999999999999999999999999999999999854 43 678888876
Q ss_pred cCccccccCCCCCceecCCCcccCCccccCCCCcCCCCCCCCCCCcCcCCCCCcccCCcccCCCCCceecCCCCccCCCC
Q psy12394 745 KTFAGCGSLPAGELCECKPKVQGRICDECRPLYWNLKASNPDGCEDCDCYTLGTIGGIKNCNPKSGQCVCKATAMNRKCD 824 (1873)
Q Consensus 745 ~~~~~C~~~~~~g~C~C~~g~~G~~C~~C~~g~~g~~~~~~~~C~~c~C~~~Gt~~~~~~C~~~tg~C~C~~g~~G~~C~ 824 (1873)
.. |+ .++|.||++++|.+|++|++|||++...|..+|.+|.|..++.. ...++..+++|.+...|.+..++
T Consensus 458 ~~---c~----~g~c~cK~nveg~~ce~ckpgyfnl~~~n~~gc~~C~c~g~s~~--c~~~~~~t~~~~~~s~f~~~s~~ 528 (1705)
T KOG1836|consen 458 DN---CD----SGRCLCKENVEGTRCERCKPGYFNLEAENPLGCTPCFCSGHSSE--CDSADGYTGVCVILSNFHQDSCG 528 (1705)
T ss_pred cc---cC----CceeeeccCccceeccccCCcccccCcCCCCCCccceeeccccc--cccccCcceeEEEeccccccccc
Confidence 54 43 47899999999999999999999999999999999999987532 23455677789999999999998
Q ss_pred CCCCCCccCcCCCCCCCccCcCCCCCcccccccCCCCCCCCCccccccCCCCceeeeeeeecCCCeeEEEEeecCCCCCC
Q psy12394 825 ACMDGTYALQDNNLFGCTECACDIGGSINNLCNKDLSALNSEELPLLNKDQPKLRFDMRITKPGPHVLVLSYVTPGPHTQ 904 (1873)
Q Consensus 825 ~C~~g~~g~~~~~~~gC~~C~C~~gg~~~~~C~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~g~y~~~l~y~~~~~~~~ 904 (1873)
.+..++++.... ..+.+...++.. +...
T Consensus 529 ~~a~~~~~~~~~-----~~~~~~~~~~~~----------------------------------------------~~~~- 556 (1705)
T KOG1836|consen 529 WVAVQRFGSEDD-----QQWSENPSGAAP----------------------------------------------SAQD- 556 (1705)
T ss_pred ceeecccCCccc-----cccccccccccc----------------------------------------------cccc-
Confidence 888777764321 111111111000 0000
Q ss_pred CCceEEEeecccccccccceEeecCCCCCCcceeeecCCCceEEEEeccCceEEEEeccCCCCCCccceEEEEEeeccCc
Q psy12394 905 DSAVIQLEASSQTTVERGNVRLHDCPYTTPCRATVLDKQGKVSVFEFDTNYISVELTADENPTNNASAAIQKIVAIPEAK 984 (1873)
Q Consensus 905 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~ 984 (1873)
.+...+..++.
T Consensus 557 ---------------------------------------~~~v~~~a~a~------------------------------ 567 (1705)
T KOG1836|consen 557 ---------------------------------------NEPVYFQAPAK------------------------------ 567 (1705)
T ss_pred ---------------------------------------ccceeEecchh------------------------------
Confidence 00000000000
Q ss_pred ccccccCcceeeeecCCccccccCCCCCCcceEEeecCCCCccccCCCcccCCCCceEEecCCCceEEEeeccCCCccEE
Q psy12394 985 WSMDHIQPKTECVRKDGQCVQAMFPTSPETKKIEAESGLGPLATQLPGSLADNKTGLVYLDHKDAMVDIAGTVNNPGAYV 1064 (1873)
Q Consensus 985 ~~~~~~~~~~~~~~~~g~c~~~~~~~~p~~~~~~~~~~~~~~~~~lp~~~~~~~~~~v~l~~~~~~~~~~~~v~~~g~Yv 1064 (1873)
|-.+. +. .....+.
T Consensus 568 flG~q----------------------------------------~~--------------------------sy~~~l~ 581 (1705)
T KOG1836|consen 568 FLGDQ----------------------------------------RV--------------------------SYGSELN 581 (1705)
T ss_pred hhcch----------------------------------------hh--------------------------cccccce
Confidence 00000 00 0000000
Q ss_pred EEEEeecCCCCCccceEEEecCeeeeeccccccCCCCCCcceeEecCCCceeeeeccceEEEEeCCCCceeEEEEEEEee
Q psy12394 1065 FVVHFYQPDFPEFDMDVLIQNGQFYEAQLPVKHCPARSGCRAVVQQTNGNRMFTLEKNIVATFKEPNHKSVWLDYILLIP 1144 (1873)
Q Consensus 1065 ~vi~y~~~~~~~~~~~v~~~~~~~~~g~~~~~~c~~~~~Cr~vv~~~~~~~~~~l~~~~~~~l~~~~~~~~~ld~v~lip 1144 (1873)
|.+.|..-+...-.+++.+.+.. .++. .++ +...+ .. ..+ .....+...+..++
T Consensus 582 ~~~~~~~~~~~~~~~~~~l~ga~----~~~~-s~~--------~~~~g--~~--~~~---------~~~~~~~~~~~~~~ 635 (1705)
T KOG1836|consen 582 FTLRVDACDTDPSGADVILEGAG----KLNC-STP--------LQAKG--NQ--CSE---------EAVGFYLFRLHEVT 635 (1705)
T ss_pred eEEEEecccCCCcccceEEecCC----cccc-ccc--------ccccc--CC--Ccc---------cccccceecccccc
Confidence 00000000000000011111100 0000 000 00000 00 000 00000111111111
Q ss_pred CcccchhhccccccchhhHHHhhcCCCcccccCCcchhcccccccceeeccCCCcCccccCCCCcceeecccCceecCCC
Q psy12394 1145 ANEFNENIINELPYSRAKEFIDVCGKNHFYLDNSTSEFCKKATFSMTISFLHEALPCQCDIDGSKSFECEQFGGQCQCKP 1224 (1873)
Q Consensus 1145 ~~~~~~~~l~~~~~~~~~~f~~~C~~~~~~i~~~~~~~c~~~~~~~~~~~~~~~~~c~c~~~gs~~~~c~~~~~~C~C~~ 1224 (1873)
...|. ..+...+.....++.++.
T Consensus 636 ~~~~~---------------------------------------------------------~~~~~~~~~~~l~~~~r~ 658 (1705)
T KOG1836|consen 636 IYKWA---------------------------------------------------------PSLRLFDFRRLLQNLTRG 658 (1705)
T ss_pred ccccc---------------------------------------------------------cccChhhHhhhhcccccc
Confidence 11111 111112222234566677
Q ss_pred CcccCCCCCCCCCccCCCCCcCCC-CCCCccccCCCceEEecCCccCCCCCcCCCCCcCCCCC----CCCccccCCCCCC
Q psy12394 1225 NVIGRRCEMCATGYYGFPDCHPCN-CPFTAVCDSYTGECICAARVIGKKCDQCEPNTFGYDPI----IGCEECNCHPHGV 1299 (1873)
Q Consensus 1225 ~~~G~~C~~C~~g~~~~~~C~~C~-C~~~~~C~~~tg~C~C~~~~~G~~C~~C~~g~~g~~~~----~~C~~C~C~~~gs 1299 (1873)
...|..++.+.+..+.|+.+.... ++.....+.+..+|.|++||+|++||.|+++|+...+. ..|-+|+|+.+
T Consensus 659 ~i~~~~~~~~~~~~~~v~le~a~~~~~~~~~~~~wve~c~C~~g~tG~~Ce~C~~gfrr~~~~~~~~~~c~~C~cngh-- 736 (1705)
T KOG1836|consen 659 RIRGTYSDACLGYLDNVTLESARPLGDGAGATDTWVEQCTCPVGYTGQFCESCAPGFRRLSPQLGPFCPCIPCDCNGH-- 736 (1705)
T ss_pred ceEEEEcccccccccccchhcccccCCCCCCccchhhhccCCCCcccchhhhcchhhhcccccCCCCCcccccccCCc--
Confidence 777888888888788888888777 87777888888889999999999999999999997543 33667777766
Q ss_pred CCCCcccCCCceeeccCCcccCCCcccCCCcccCC------CCCCccccCCCccccccCCCCceee-ccCccccCCCCcC
Q psy12394 1300 NGTQQCDLFDGSCSCKENIVGRTCDHCVEGHWSFP------YCVPCECDLRGTTIDICNQGTAECY-CKKNVYGAACDVC 1372 (1873)
Q Consensus 1300 ~~~~~C~~~~G~C~C~~~~~G~~C~~C~~G~~g~p------~C~~C~C~~~gs~~~~Cd~~~G~C~-C~~~~~G~~Cd~C 1372 (1873)
+..||+.||+|.|++++.|++|++|++||||+| +|++|+|+..+.....++..+++|. ||++|+|.+|++|
T Consensus 737 --~~~Cd~~tG~C~C~~~t~G~~C~~C~~GfYg~~~~~~~~dC~~C~Cp~~~~~~~~~~~~~~iCk~Cp~gytG~rCe~c 814 (1705)
T KOG1836|consen 737 --SNICDPRTGQCKCKHNTFGGQCAQCVDGFYGLPDLGTSGDCQPCPCPNGGACGQTPEILEVVCKNCPPGYTGLRCEEC 814 (1705)
T ss_pred --cccccCCCCceecccCCCCCchhhhcCCCCCccccCCCCCCccCCCCCChhhcCcCcccceecCCCCCCCcccccccC
Confidence 359999999999999999999999999999998 3999999999988888888899998 9999999999999
Q ss_pred CCCccccCCCCCCCCccccccCCCcccccCccccccccccccccccCCCCCCCCCCccCCCCceeccccCCCCCccEEcC
Q psy12394 1373 KEGTFDIQADNVDGCTRCFCFGKTTKCSSSNLYRSQLVYCKPCECSGNINRTDPGSCDSVTGECTGCLFNSAGDSCQYCA 1452 (1873)
Q Consensus 1373 ~~g~~g~~~~~~~gC~~C~C~g~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cd~~tG~C~~c~~nt~G~~c~~c~ 1452 (1873)
.+|||+++..+- .++..|++|.|+++++....+.||+.+|+|+.|++||+|.+|+.|+
T Consensus 815 ~dgyfg~p~~~~----------------------~~~~~c~~c~c~~n~dp~~~g~c~~~tg~c~~ci~nT~g~~cd~c~ 872 (1705)
T KOG1836|consen 815 ADGYFGNPLGHD----------------------GDVRPCQSCQCNFNVDPNAFGNCNRLTGECLKCIHNTAGEYCDLCK 872 (1705)
T ss_pred CCccccCCCCCC----------------------CCcccCccceeccccCccccccccccccceeeccCCcccccccccc
Confidence 999999764321 3455677888899999999999999999999999999999999999
Q ss_pred CCCCcCCCC---CCCcccCCCCCCcccCccccCCCCCCCcccccCCCcccccccccCCCCcCCCCCCCCCCccCCCCCCC
Q psy12394 1453 PGYYGNAVS---LKNCVKCNCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDECRPLYWNLKASNPDGCEDCDCYTLG 1529 (1873)
Q Consensus 1453 pg~yG~~~~---~~~c~~c~c~~~~~~~~~~~~~~~~~~~~c~C~~~v~G~~Cd~C~~~y~~~~~~~~~~C~~C~C~~~~ 1529 (1873)
+|||||++. ...|..|+|+|.++......|+ +.+|||.|+++|+|+.|..|.++||++. +..+|++|.|++.+
T Consensus 873 ~g~~gd~l~~~p~~~c~~c~c~p~gs~~~~~~c~--~~tGQcec~~~v~g~~c~~c~~g~fnl~--s~~gC~~c~c~~~g 948 (1705)
T KOG1836|consen 873 EGYFGDPLAPNPEDKCFACGCVPAGSELPSLTCN--PVTGQCECKPNVEGRDCLYCFKGFFNLN--SGVGCEPCNCDPTG 948 (1705)
T ss_pred cCccccccCCCcCCccccccCccCCcccccccCC--CcccceeccCCCCccccccccccccccC--CCCCcccccccccc
Confidence 999999996 3459999999988765433344 7889999999999999999999999998 35689999999999
Q ss_pred CcCCcccccCCCCcccccCCCCcCCccccCCCccccCCCCcCCccccccCCCccccccccccccccccEEEeeeeecccc
Q psy12394 1530 TIGGIKNCNPKSGQCVCKATAMNRKCDACVDGTYALQDNNLFGCTECACDIGGSINNLCNKSLIWMSSFRMVSFTKLSSQ 1609 (1873)
Q Consensus 1530 s~~g~~~c~~~tgqC~C~~g~~g~~Cd~C~~g~~~~~~~~~~gc~~c~C~~~~s~~~~c~~~~~~~~~v~l~e~~~l~~~ 1609 (1873)
++.. .|+..||||.|++||+|++||+|..++|+.. ..||..|+|++.+++..+|+...
T Consensus 949 s~~~--~c~~~tGqc~c~~gVtgqrc~qc~~~~~~~~---~~gc~~c~c~~~Gs~~~qc~~~~----------------- 1006 (1705)
T KOG1836|consen 949 SESS--DCDVGTGQCYCRPGVTGQRCDQCETYHFGFQ---TEGCGLCECDPLGSRGFQCDPED----------------- 1006 (1705)
T ss_pred cccc--cccccCCceeeecCccccccCccccCccccc---ccCCcceecccCCcccceecccC-----------------
Confidence 9874 9999999999999999999999999999754 48999999999999888887753
Q ss_pred cccccccceeecccccCCCccccceEeccCccccccccCCCCCCCCCccccCCCCCcCCCCC
Q psy12394 1610 SNIVLPGLVVEQFLNLCPTEFDMDVLIQNGQFYEAQLPDCQHNTLGDQCEQCQPGYHGNATQ 1671 (1873)
Q Consensus 1610 ~~~~~~~~~~~~~~~~cp~~y~g~~~~~~g~~~g~c~~~C~~~t~G~~Ce~C~~gy~g~a~~ 1671 (1873)
|+|. |..+++|.+|.+|.+++++++..
T Consensus 1007 ---------------------------------G~c~--c~~~~~g~~c~~c~~~~~~~~~~ 1033 (1705)
T KOG1836|consen 1007 ---------------------------------GQCP--CRPGFEGRRCDQCEEGFFGNAQG 1033 (1705)
T ss_pred ---------------------------------Ceee--ecCCCCCcccccccCCccccccC
Confidence 7775 89999999999999999998864
No 5
>KOG3512|consensus
Probab=100.00 E-value=1.1e-53 Score=491.13 Aligned_cols=276 Identities=37% Similarity=0.736 Sum_probs=242.1
Q ss_pred CCCCCceEEEeeccCC--------------------------------------------------eEEEccCCCCCCCC
Q psy12394 4 SPRPAVWALERSADNG--------------------------------------------------ITISLLDHRPSMKN 33 (1873)
Q Consensus 4 sprp~~~~~ers~d~g--------------------------------------------------i~~s~~~~rp~~~~ 33 (1873)
|+||++|+||||+|+| |+|+.|++||++.+
T Consensus 147 S~rPdsmaL~KS~D~GrTWqPfQFYss~C~~~fgr~~~~a~isk~n~~Ea~Ct~s~~~~~~~~~~~~af~~l~~Rps~~d 226 (592)
T KOG3512|consen 147 SGRPDSMALEKSLDYGRTWQPFQFYSSDCRKAFGRSPRRADISKSNEQEALCTESYSDGAGSGGGKIAFFELEDRPSAFD 226 (592)
T ss_pred cCCCceeeeeeccccCCcccccchhHHHHHHHhCCCCcccccccCCccceeeccccccCCCCCCceEEeeeecCCccccc
Confidence 8999999999999999 99999999999999
Q ss_pred CCCchhhhhheeeeeeeEeeccccccccccccccCCCCCcceeeeEEeeeeeeeeeeccCCCCCcCccCCCCCCccceee
Q psy12394 34 FFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICR 113 (1873)
Q Consensus 34 ~~~s~~l~~~~~at~ir~~~~~~~t~~~~~~~~~~~~~~~~~~~yYai~d~~v~grC~C~gHa~~C~~~~~~~~~~~~C~ 113 (1873)
|++|++||||+|||+|||+|+|+++++++. .|...+.+|||||+||.|+|||+|||||+.|... ...+++|+
T Consensus 227 ldss~vLqDwvTaTDiRvvl~Rp~s~G~~~-----dde~~l~rYfYAisdl~VgGRCKCNgHAs~Cv~d---~~~~ltCd 298 (592)
T KOG3512|consen 227 LDSSPVLQDWVTATDIRVVLLRPASLGEEY-----DDEANLARYFYAISDLAVGGRCKCNGHASRCVMD---ESSHLTCD 298 (592)
T ss_pred cccchhhhhheeeeeeEEEEechhhcCCcc-----hhhhhhhhhheecccceeeeeeeecCccceeeec---cCCceEEe
Confidence 999999999999999999999999988765 4556778899999999999999999999999754 24579999
Q ss_pred cCCCCCCCCCCCCCCCccCCcCCcCCCCCCCCccCCCCCCCCCccccCccccccCcccccCcCcCCCceeCCCCCCCCCC
Q psy12394 114 CQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSCEPCNCHGHADKCVYDPMVDEKRLSVDIQGNYEGGGVCQECRDNTEGI 193 (1873)
Q Consensus 114 C~h~t~G~~Ce~c~p~~~~~p~~~~~~~~~~~C~~C~C~~~~~~C~~d~~~~~~~~s~~~~g~~~~GG~C~~C~~~~~G~ 193 (1873)
|+|||+|+.|++|+|+|.++||++++....++|.+|+||+|+.+|.++.++++. +|.+ +||||++|+|||+|.
T Consensus 299 C~HNTaGPdCgrCKpfy~dRPW~raT~~~a~~c~ac~Cn~harrcrfn~Ely~l------Sgr~-SggvClnCrHnTaGr 371 (592)
T KOG3512|consen 299 CEHNTAGPDCGRCKPFYYDRPWGRATALPANECVACNCNGHARRCRFNMELYRL------SGRR-SGGVCLNCRHNTAGR 371 (592)
T ss_pred cccCCCCCCcccccccccCCCccccccCCCccccccccchhhhhcccchhhhcc------cCcc-ccceEeecccCCCCc
Confidence 999999999999999999999999999999999999999999999999999874 5766 789999999999999
Q ss_pred CCCCCCCCCccCCCCCCCCCCCCccCCCCCCCC-CCeeecCCCceecCCCCcCCCCcccCCcccCCCC----CCCCCCCC
Q psy12394 194 NCHQRVAGYYRPYGKHLNETDVCQPCQCAFHYA-TGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPN----CEPCKCHM 268 (1873)
Q Consensus 194 ~Ce~C~~g~~~~~~~~~~~~~~C~~C~C~~~~n-~g~C~~~~g~C~C~~G~~G~~Ce~C~~g~~g~~~----C~~c~C~~ 268 (1873)
+|+.|++||||+.+.++++..+|..|.|+|.++ +.+|...+|+|.|++|.+|..|++|++||+-.-. |..+|=..
T Consensus 372 hChyCreGyyRd~s~pl~hrkaCk~CdChpVGs~gktCNq~tGqCpCkeGvtG~tCnrCa~gyqqsrs~vapcik~p~~~ 451 (592)
T KOG3512|consen 372 HCHYCREGYYRDGSKPLTHRKACKACDCHPVGSAGKTCNQTTGQCPCKEGVTGLTCNRCAPGYQQSRSPVAPCIKIPTDA 451 (592)
T ss_pred ccccccCccccCCCCCCchhhhhhhcCCcccccccccccccCCcccCCCCCcccccccccchhhcccCCCcCceecCCCC
Confidence 999999999999999999999999999999987 4589999999999999999999999999976422 22222211
Q ss_pred --CCCCCceecCCCCCcccCCCCCccCCCcc
Q psy12394 269 --NGTLDFYCEPASGQQCPCKENYAGDHCDT 297 (1873)
Q Consensus 269 --~gt~~~~C~~~~G~~C~C~~g~~G~~Ce~ 297 (1873)
.++++.+ ...+.+.|+.++.|.++++
T Consensus 452 ~~~~~s~ve---~qd~~s~Ck~~~~~~r~n~ 479 (592)
T KOG3512|consen 452 PTLGSSGVE---PQDQCSKCKASPGGKRLNQ 479 (592)
T ss_pred ccccCCCCc---chhccccCCCCCcceeccc
Confidence 0111111 1123567999998888875
No 6
>KOG3512|consensus
Probab=99.90 E-value=1.5e-24 Score=251.53 Aligned_cols=103 Identities=42% Similarity=0.890 Sum_probs=91.9
Q ss_pred CcCCCCCCCCCCCCccccc-------------------CCCCCCCCCccccChhhhcccccccccCccCCCeecCCCCCC
Q psy12394 1718 QQCPCKENYAGDHCDTCAQ-------------------ACNCHGHADKCVYDPMVDEKRLSVDIQGNYEGGGVCQECRDN 1778 (1873)
Q Consensus 1718 ~~C~C~~gy~G~sCe~Ca~-------------------~c~c~g~~~~c~~~~~~~~~~~~c~~~~~~~~~g~c~~C~~n 1778 (1873)
.+|.|++|.+|+-|++|.| +|+||+|+..|+|++|+|..++.+ ++|||+||+||
T Consensus 295 ltCdC~HNTaGPdCgrCKpfy~dRPW~raT~~~a~~c~ac~Cn~harrcrfn~Ely~lSgr~-------SggvClnCrHn 367 (592)
T KOG3512|consen 295 LTCDCEHNTAGPDCGRCKPFYYDRPWGRATALPANECVACNCNGHARRCRFNMELYRLSGRR-------SGGVCLNCRHN 367 (592)
T ss_pred eEEecccCCCCCCcccccccccCCCccccccCCCccccccccchhhhhcccchhhhcccCcc-------ccceEeecccC
Confidence 4666777777777777766 699999999999999999999866 78999999999
Q ss_pred CCCCCCcccCCCccccCCCCCCCCC---------------Cc---ceeeeecCCCCCCCCCCCCcCC
Q psy12394 1779 TEGINCHQCVAGYYRPYGKHLNETD---------------VC---QRQCLCQPRVTGQTCNQPLQAH 1827 (1873)
Q Consensus 1779 t~G~~C~~C~~g~~~~~~~~~~~~~---------------~c---~g~c~c~~~~~g~~c~~c~~~~ 1827 (1873)
|+|+||++|++||||+.+.|+++.. +| ||||.||+||||..|+|||++|
T Consensus 368 TaGrhChyCreGyyRd~s~pl~hrkaCk~CdChpVGs~gktCNq~tGqCpCkeGvtG~tCnrCa~gy 434 (592)
T KOG3512|consen 368 TAGRHCHYCREGYYRDGSKPLTHRKACKACDCHPVGSAGKTCNQTTGQCPCKEGVTGLTCNRCAPGY 434 (592)
T ss_pred CCCcccccccCccccCCCCCCchhhhhhhcCCcccccccccccccCCcccCCCCCcccccccccchh
Confidence 9999999999999999999998775 45 8999999999999999999943
No 7
>KOG4289|consensus
Probab=99.82 E-value=2.7e-19 Score=225.33 Aligned_cols=118 Identities=30% Similarity=0.831 Sum_probs=95.7
Q ss_pred CCCcccCCCCCCcCCccCC-CCCcccCCCCccCCCCCC-----CCCCcCCCCCCccCCCCCCCCCCcccCC-CcceecCC
Q psy12394 596 PDCKLCGCSAVGSSSTACD-VSGKCPCLVNFGGKTCSQ-----CSPGFYQYPQCKACNCDSHGNIGVSCDD-DGKCQCEK 668 (1873)
Q Consensus 596 ~~C~~c~C~~~Gt~~~~C~-~~g~C~C~~G~~G~~Ce~-----C~~g~~g~~~C~~c~C~~~~~~gg~C~~-~g~C~C~~ 668 (1873)
+.|.-.+|.|.|+|...=- ..|+|.|++||+|++||. |+.||||+|.|-+|.|.-+.-....|+. +|+|+|+.
T Consensus 1717 ~vC~lnpc~~~g~Cv~sp~a~GY~C~C~~g~~G~~Ce~~~dq~CPrGWWG~P~CgpC~CavsKgfdp~CnKt~G~CqCKe 1796 (2531)
T KOG4289|consen 1717 DVCSLNPCENQGTCVRSPGAHGYTCECPPGYTGPYCELRADQPCPRGWWGFPTCGPCNCAVSKGFDPDCNKTNGQCQCKE 1796 (2531)
T ss_pred chhcccccccCceeecCCCCCceeEECCCcccCcchhhhccCCCCCcccCCCCccCccccccCCCCCCccccCcceeecc
Confidence 3566678888884321111 228999999999999984 9999999999999999976656678988 99999988
Q ss_pred CCCCCCCcccCCCccCCCCcccCCCCCCCCCCcccCCCCceeeCCCcccCCCCcCCC
Q psy12394 669 NFGGDRCERCKEGLYNFPICEACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCERCKE 725 (1873)
Q Consensus 669 g~~G~~Ce~C~~g~~g~~~C~~C~C~~~g~~~~~C~~~g~C~C~~g~~G~~Ce~C~~ 725 (1873)
++.-. ...|.+|.|- +|+....|+.+|+|.|++|-.|++|++|..
T Consensus 1797 ~hy~~-----------~~~Cl~CdC~-~Gs~Sr~C~adGqC~C~pgaiGRqCdrCd~ 1841 (2531)
T KOG4289|consen 1797 NHYRP-----------IGSCLPCDCY-FGSDSRECDADGQCPCKPGAIGRQCDRCDN 1841 (2531)
T ss_pred ccccC-----------CCcceeeccc-cCCCcccccCCCcCCCCCccccccccccCC
Confidence 76431 2348899998 788888999999999999999999999864
No 8
>smart00136 LamNT Laminin N-terminal domain (domain VI). N-terminal domain of laminins and laminin-related protein such as Unc-6/ netrins.
Probab=99.81 E-value=1.7e-20 Score=214.04 Aligned_cols=83 Identities=55% Similarity=0.955 Sum_probs=77.8
Q ss_pred CCCCCCCCceEEEeeccCC-------------------------------------------------eEEEccCCCCCC
Q psy12394 1 MGNSPRPAVWALERSADNG-------------------------------------------------ITISLLDHRPSM 31 (1873)
Q Consensus 1 ~~~sprp~~~~~ers~d~g-------------------------------------------------i~~s~~~~rp~~ 31 (1873)
|+ ||||++|||||| |+| |+||+|++||++
T Consensus 107 F~-s~RPa~~i~erS-d~G~tW~p~qyfa~dC~~~f~~~~~~~~~~~n~~~v~Ct~~ys~~~P~~~g~V~fs~l~~rps~ 184 (238)
T smart00136 107 FC-SPRPSLWILERS-DFGKTWQPWQYFSSDCRRTFGRPPRGPITKGNEDEVICTSEYSDIVPLEGGEIAFSLLEGRPSA 184 (238)
T ss_pred ec-CCCCceEEEeec-CCCCCCcEeeeeecchhhhcCCCCCCCCCCCCCCccEECCCCCCCcCCCCCEEEEEecCCCCCC
Confidence 56 999999999999 988 999999999999
Q ss_pred CCCCCchhhhhheeeeeeeEeeccccccccccccccCCCCCcceeeeEEeeeeeeee
Q psy12394 32 KNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIKDISIGG 88 (1873)
Q Consensus 32 ~~~~~s~~l~~~~~at~ir~~~~~~~t~~~~~~~~~~~~~~~~~~~yYai~d~~v~g 88 (1873)
.+|.+|++||||++||||||+|+|++|++++++. ..++++++|||||+||.|||
T Consensus 185 ~~~~~S~~LQd~vtaTdiRi~l~rl~t~g~~~~~---~~~~~~~~yyYAIsdi~VgG 238 (238)
T smart00136 185 TDFDNSPVLQEWVTATNIRVRLTRLRTLGDELMD---DRPEVTRRYYYAISDIAVGG 238 (238)
T ss_pred cCCCCCHHHHhheeeeEEEEEEEccCcCCccccc---cccccccceeEEEEeeEecC
Confidence 9999999999999999999999999999999874 23788999999999999997
No 9
>KOG4289|consensus
Probab=99.81 E-value=1.6e-18 Score=218.56 Aligned_cols=129 Identities=26% Similarity=0.534 Sum_probs=89.2
Q ss_pred ccccCCCcccCCCccCCCCCcCCCCCCcCCCCCCCCCceec--CCCCeeeeCCCccCCCCccCCCCccCCCCCCCCCCCC
Q psy12394 329 NCTCRNNFAGRTCDSCADGYYNYPRCTSCQCAFHYATGNCA--EGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHM 406 (1873)
Q Consensus 329 ~C~C~~G~~G~~Ce~C~~G~~g~~~C~~C~c~~c~n~g~C~--~~~g~C~C~~G~tG~~Ce~C~~g~~~~~~C~~~~C~n 406 (1873)
.|.|++||+|..||+ .-..|...||.|+|.|. +++|+|.|++||+|.+||.-. ...-|.+..|.|
T Consensus 1223 rCrCPpGFTgd~CeT---------eiDlCYs~pC~nng~C~srEggYtCeCrpg~tGehCEvs~----~agrCvpGvC~n 1289 (2531)
T KOG4289|consen 1223 RCRCPPGFTGDYCET---------EIDLCYSGPCGNNGRCRSREGGYTCECRPGFTGEHCEVSA----RAGRCVPGVCKN 1289 (2531)
T ss_pred eEeCCCCCCcccccc---------hhHhhhcCCCCCCCceEEecCceeEEecCCccccceeeec----ccCccccceecC
Confidence 899999999999986 23446778999999996 567799999999999999311 134577888999
Q ss_pred CcEeeeeccCCCCCeeeCCCC-cccCCCCcCCCCc-----ccCCCcccccCCCcceeeeeecccccceEEEEeee
Q psy12394 407 NGTLDFYCEPASGQQCPCKEN-YAGDHCDTCAQGY-----YNFPTCSQITLPDVPVIRVLMATITTHAVLLVNVT 475 (1873)
Q Consensus 407 ~gtc~~~cd~~~g~~C~C~~g-~~G~~Ce~C~~g~-----~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (1873)
+|||.. +...|+.|.||.| |++.+|+.-...| ..+.... -.-.....+.+++...++.|++|+.
T Consensus 1290 ggtC~~--~~nggf~c~Cp~ge~e~prC~v~trSFp~~sfv~frglr---qRfh~TlslsfaT~~~nGlL~ynGn 1359 (2531)
T KOG4289|consen 1290 GGTCVN--LLNGGFCCHCPYGEFEDPRCEVTTRSFPPESFVTFRGLR---QRFHFTLSLSFATIERNGLLLYNGN 1359 (2531)
T ss_pred CCEEee--cCCCceeccCCCcccCCCceEEEeeccCchheEEEeccc---cceEEEEEEEEEEeeecceEEecCC
Confidence 999863 5567789999987 7888998422222 1110000 0001112333566677778888764
No 10
>PF00055 Laminin_N: Laminin N-terminal (Domain VI); InterPro: IPR008211 Laminin is a large molecular weight glycoprotein present only in basement membranes in almost every animal tissue. Laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components []. Each laminin is a heterotrimer assembled from alpha, beta and gamma chain subunits, secreted and incorporated into cell-associated extracellular matrices []. Basement membrane assembly is a cooperative process in which laminins polymerise through their N-terminal domain (LN or domain VI) and anchor to the cell surface through their G domains. Netrins may also associate with this network through heterotypic LN domain interactions []. This leads to cell signalling through integrins and dystroglycan (and possibly other receptors) recruited to the adherent laminin. This LN domain dependent self-assembly is considered to be crucial for the integrity of basement membranes, as highlighted by genetic forms of muscular dystrophy containing the deletion of the LN module from the alpha 2 laminin chain []. The laminin N-terminal domain is found in all laminin and netrin subunits except laminin alpha 3A, alpha 4 and gamma 2. ; PDB: 3TBD_A 3ZYG_B 3ZYI_B 3ZYJ_D 2Y38_A.
Probab=99.81 E-value=1.2e-20 Score=216.00 Aligned_cols=84 Identities=49% Similarity=0.826 Sum_probs=69.2
Q ss_pred CCCCCCCCceEEEeeccCC-------------------------------------------------eEEEccCCCCCC
Q psy12394 1 MGNSPRPAVWALERSADNG-------------------------------------------------ITISLLDHRPSM 31 (1873)
Q Consensus 1 ~~~sprp~~~~~ers~d~g-------------------------------------------------i~~s~~~~rp~~ 31 (1873)
|+ ||||++||||||+|+| |+|++|+|||++
T Consensus 105 F~-spRP~~miierS~D~gtW~p~qYfA~~C~~~f~~~~~~~~~~~~~~~~v~Ct~~yS~~~P~~~g~V~f~~l~grP~~ 183 (237)
T PF00055_consen 105 FC-SPRPAAMIIERSSDFGTWQPWQYFASDCSRTFGMPPNGPPPKFANPDEVICTSRYSDIEPLTGGEVIFSLLEGRPSA 183 (237)
T ss_dssp ES-S---SEEEEEEESSTTSEEEEEEEESSHHHHCS--BTTGGG-STSTT---EESTTTTSSSTSTTEEEEESHHCCCCC
T ss_pred Ec-CCCCCeEEEEEccCCCceeEeHHhhcCChhhcCCcccccccccCCCCcCeecCcCCCCcCccccceeeeeccCCCCC
Confidence 45 9999999999999999 999999999999
Q ss_pred CCCCCchhhhhheeeeeeeEeeccccccccccccccCCCCCcceeeeEEeeeeeeee
Q psy12394 32 KNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIKDISIGG 88 (1873)
Q Consensus 32 ~~~~~s~~l~~~~~at~ir~~~~~~~t~~~~~~~~~~~~~~~~~~~yYai~d~~v~g 88 (1873)
.+|++|++||||++||||||+|+|++|+++++++. |+.++++|||||+||.|+|
T Consensus 184 ~~~~~S~~Lq~~~~aT~lRi~l~~~~t~~~~~~~~---~~~~~~~yyYAI~di~V~G 237 (237)
T PF00055_consen 184 NDFDPSPELQDWVTATNLRIRLTRLHTLGDELMDR---DPKVLRSYYYAISDIQVGG 237 (237)
T ss_dssp TTHHHSHHHHHHCEEEEEEEEEEE----TTSSCHH----TTTGGG---EEEEEEEEE
T ss_pred CcCCCCHHHHhhhceeEEEEEEeeeccCCCcccCc---CcccCccccEEEEEEEEeC
Confidence 99999999999999999999999999999998753 8899999999999999998
No 11
>KOG3509|consensus
Probab=99.53 E-value=1.1e-12 Score=170.67 Aligned_cols=588 Identities=19% Similarity=0.312 Sum_probs=322.5
Q ss_pred eecCCCCcccCCCCCCCCCccCC--CCCcCCCCC-CCccccCCCceEE-e-cCCccCCCCC---cCCCCCcCCC---CCC
Q psy12394 1219 QCQCKPNVIGRRCEMCATGYYGF--PDCHPCNCP-FTAVCDSYTGECI-C-AARVIGKKCD---QCEPNTFGYD---PII 1287 (1873)
Q Consensus 1219 ~C~C~~~~~G~~C~~C~~g~~~~--~~C~~C~C~-~~~~C~~~tg~C~-C-~~~~~G~~C~---~C~~g~~g~~---~~~ 1287 (1873)
.+.|.++..++.+..+.+-.... +.|.-|.+. ..+.|.+.+++|+ + +.+..+.+|+ +|..+.+.+. ...
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 115 (964)
T KOG3509|consen 36 EFKCNNPRCVQPEALLDADSTCGPNSTPSGCNAKPSASDCKPTETQCRDRLRCNPQSFQCDGTNDCKDGSDEVGCKSDAL 115 (964)
T ss_pred hhccCCccccCchhhhccccccCCCCCcCCccccccccccCCcccccccchhcCCccccccCCCCCCccchhcccccccc
Confidence 34455555566555443322211 134445554 3467888999997 4 6778888998 8999988763 234
Q ss_pred CCccccCCCCCCCC--CCcc----cCCCceeeccCCcccCCCcccCCCcccCCCCCCccccCC-CccccccCCCC--ce-
Q psy12394 1288 GCEECNCHPHGVNG--TQQC----DLFDGSCSCKENIVGRTCDHCVEGHWSFPYCVPCECDLR-GTTIDICNQGT--AE- 1357 (1873)
Q Consensus 1288 ~C~~C~C~~~gs~~--~~~C----~~~~G~C~C~~~~~G~~C~~C~~G~~g~p~C~~C~C~~~-gs~~~~Cd~~~--G~- 1357 (1873)
...+|.|+..-..+ ..+| ....-.+....+....+|++|.+.++|-|.+.++.|-.. -....+|+..+ |.
T Consensus 116 ~~~~~tc~~~~~~~~~~~~c~~~~~~~~t~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~tC~~~~~~~~~ 195 (964)
T KOG3509|consen 116 VDPGVTCPQVPAGRASSSTCKADTVGEPTIDWRLNAEPVCECKRCCPTSEGGPGTEPIHCAQPVCQGGATCEVRNGKGYS 195 (964)
T ss_pred cCCCCCCCCcccccccccchhhhccCCcchhhhccccccccchhcCcccCCCCccccccccCcccccceeEEecCCccee
Confidence 56677777653211 2233 333445678888899999999999999998877776542 11134554432 22
Q ss_pred eeccCccccCCCCcCCCCccccCCCCCCCCccccccCCCcccccCcccccccc--ccc---cccccCCCCCCC--CCCcc
Q psy12394 1358 CYCKKNVYGAACDVCKEGTFDIQADNVDGCTRCFCFGKTTKCSSSNLYRSQLV--YCK---PCECSGNINRTD--PGSCD 1430 (1873)
Q Consensus 1358 C~C~~~~~G~~Cd~C~~g~~g~~~~~~~gC~~C~C~g~~~~C~~~~~~~~~~~--~~~---~~~~~~~~~~~~--~~~cd 1430 (1873)
+.|+..-.+..|+.|++..|-+....+.||++|||++++--+.++.+....+. +++ .|....-....+ ...+-
T Consensus 196 ~~~~~~~~~~~c~~~~~r~~~~f~~~~~g~~~~~~~~vp~~~e~S~~~~~~~h~~~~~~~~~~~~~~~s~~~~~~~~~~~ 275 (964)
T KOG3509|consen 196 LECPDCKVRVVCEACKPRAFCPFEKSVEGCLKCFCFGVPRPSESSLHAFRAIHGATLHVDSLGVFFSDSEHRDILGNFLF 275 (964)
T ss_pred eeccccccceehhhccCceecccccccccccceeecCCCccccchhhhHhhhccchhccchheeeccccccccccccccc
Confidence 34555555556999999999999999999999999999998888766532111 010 111000000000 00000
Q ss_pred CCCCceecccc---CCCCCc-------------------------cEEcCCCCC--cCCC-------------------C
Q psy12394 1431 SVTGECTGCLF---NSAGDS-------------------------CQYCAPGYY--GNAV-------------------S 1461 (1873)
Q Consensus 1431 ~~tG~C~~c~~---nt~G~~-------------------------c~~c~pg~y--G~~~-------------------~ 1461 (1873)
..-.....++. .+.|.. +++ -.+.. |.++ -
T Consensus 276 ~~~~~~f~~lt~~~g~~g~~~~~~~~~~~~~~~~~~~~~E~~~~~i~r-~s~~~~~g~~~~l~g~~~~~~~~i~~ee~v~ 354 (964)
T KOG3509|consen 276 SSFKDGFRALTLDGGTDGVRYDCGLPQREDRLDVTSYIGEWRFGIIFR-GSGLSVSGHKGVLQGNSNILVSRITNEESVF 354 (964)
T ss_pred cccccceeeeccCCCCccccccccCcchhhhhccccccceeeeeEeee-cccccccCcceeecccccccccceeeccccc
Confidence 00000000000 000000 000 00000 0000 0
Q ss_pred CCCcccCCCC------C-----------------------C-cccCcc---------------ccCCCCCCCcccccCCC
Q psy12394 1462 LKNCVKCNCN------P-----------------------E-GVLKTF---------------AGCGSLPAGELCECKPK 1496 (1873)
Q Consensus 1462 ~~~c~~c~c~------~-----------------------~-~~~~~~---------------~~~~~~~~~~~c~C~~~ 1496 (1873)
+++...-... + . .+.... ..+.......+|.|.++
T Consensus 355 lg~i~ni~~l~~~~~~~eGf~gci~~~~~~~k~l~~~~~~~~~v~~~~~c~g~~c~~~p~~~~g~c~p~~~~~~c~c~~g 434 (964)
T KOG3509|consen 355 LGGIINIETLQHNLPLPEGFAGCIRDLVMNLKDLRVTLQRASYVAAQGTCLGDVCWRIPCQHDGPCLQTLEGKQCLCPPG 434 (964)
T ss_pred CCceeeeccccccCCCccCccceehhhhhhccccccccccccccccccccCCCccccccCCCCccccccccccceecccc
Confidence 0000000000 0 0 000000 00111255678999999
Q ss_pred cccccccccCCCCcCCCCC---------CCCCCccCCCCCCCCcCCcccccCCCCcccccCCCCcCCccccCCCccccCC
Q psy12394 1497 VQGRICDECRPLYWNLKAS---------NPDGCEDCDCYTLGTIGGIKNCNPKSGQCVCKATAMNRKCDACVDGTYALQD 1567 (1873)
Q Consensus 1497 v~G~~Cd~C~~~y~~~~~~---------~~~~C~~C~C~~~~s~~g~~~c~~~tgqC~C~~g~~g~~Cd~C~~g~~~~~~ 1567 (1873)
+.|..|..|..++...+.. .+++|+.|. ++ ++. .....-|++.|+.-..+..+..+++-+++...
T Consensus 435 ~~G~~c~d~~~~~~~~~~g~y~~t~~~~~~~~~~~c~---pg-~g~--~~~~~lg~~~~~a~~s~~s~~~~~~~~f~~~~ 508 (964)
T KOG3509|consen 435 YTGDSCEDCMNGCDRSPNGSYLGTCVPIQGKRCEYCG---PG-AGA--PTAGALGQCGCKASASGPSTSRCMPHHFGISP 508 (964)
T ss_pred ccCchhhccCccccccCCccccceEeccCCCcceeec---CC-CCC--ccchhccccCccceeccccccccccccCCccc
Confidence 9999999988877554321 123444443 44 432 34445789999999999999999999998888
Q ss_pred CCcCCccccccCCCccccccccccccccccEEEee---------eee--ccccccccccc----------ceeec----c
Q psy12394 1568 NNLFGCTECACDIGGSINNLCNKSLIWMSSFRMVS---------FTK--LSSQSNIVLPG----------LVVEQ----F 1622 (1873)
Q Consensus 1568 ~~~~gc~~c~C~~~~s~~~~c~~~~~~~~~v~l~e---------~~~--l~~~~~~~~~~----------~~~~~----~ 1622 (1873)
....++-.|+|...+ .+|...+.|..++.... |.. |......+++. ++... -
T Consensus 509 t~~~~~~~c~~~~~~---~s~s~~~~~~~s~~~~~~~~~~~~i~~~~~~l~~r~~~l~~~~~i~~~~s~~v~a~~~~~~~ 585 (964)
T KOG3509|consen 509 TNHQGCLPCFCSELT---LSISSSTYRCSSVSIDYARGQFDLIELLRPDLRQRYASLGRDQLINQAISFSVSAEAGGLLL 585 (964)
T ss_pred ccccccccccchhcc---cccccccccccchheecccchhhhhhhccccccccccccceeeeccccceeeeeeeccceEE
Confidence 889999999887655 55555554444443211 111 00000001111 11000 1
Q ss_pred cccCCCccccceEeccCccccccccCCCCCCCCCcc-cc----CCC-------------C-CcC----------CCCCCC
Q psy12394 1623 LNLCPTEFDMDVLIQNGQFYEAQLPDCQHNTLGDQC-EQ----CQP-------------G-YHG----------NATQGT 1673 (1873)
Q Consensus 1623 ~~~cp~~y~g~~~~~~g~~~g~c~~~C~~~t~G~~C-e~----C~~-------------g-y~g----------~a~~g~ 1673 (1873)
..+.|..+.++.+..+|.-+.+-. .+.+..- |. -.. + +.. .+.+..
T Consensus 586 ~~~~P~~~vad~vs~~g~~~~~~~-----s~~~~gs~e~~~~~v~~~~~~l~~~~~~~sl~~~d~~~~vk~~~~~a~~~~ 660 (964)
T KOG3509|consen 586 RWSLPAKPVADKVSPLGGALSQTH-----SYKGNGSSERSADSVPRNDPALQVLHRAPSLADNDNKSAVKKIEGSAHRVD 660 (964)
T ss_pred EecCCCCCCcceeccccceeeeee-----ccCcCCCcccccccccccccccccccccCccccccchhhhccccccccccc
Confidence 226788888888887776444421 1110000 00 000 0 000 111100
Q ss_pred --------ccccccccCCCCcCCCccccCccc-cCCCccccCCcc---cccc--CCCCCcCCCCCCCCCCCCccccc---
Q psy12394 1674 --------MADCLICACPLPITSNNFASGCDV-SEDGCHMNGTLN---FYCE--PTSGQQCPCKENYAGDHCDTCAQ--- 1736 (1873)
Q Consensus 1674 --------~~~c~~c~c~~~~~~n~f~~~c~~-~~~~~~~~~~~~---~~~~--~~~~~~C~C~~gy~G~sCe~Ca~--- 1736 (1873)
..+-..-+.-+.+ ..++++.+.. ....+.+.+++. ...+ +..|++|+|+++|.|++||.|++
T Consensus 661 ~~~~~~~~~~m~~a~~~~~l~-~st~~~~~~p~~~~~~~~~ga~~~~~g~~~~~~~~~~~C~c~~g~~G~~ce~c~e~~~ 739 (964)
T KOG3509|consen 661 GIRARGQHILMTVADTTTVLI-KSTVSTDCTPSECSSANLEGALCYGGGKTDIIAAEVEQCQCPKGLVGTSCEDCAEGYT 739 (964)
T ss_pred ceecCCceeccccccccceee-eecccCCCChHHhhhhccCcccccCCCCCchhhhhccccccCccccCccccccccccc
Confidence 0000000111111 1112222211 111112222110 0111 34589999999999999999999
Q ss_pred -------------CCCCCCCCCccccChhhhcccccccccCccCCCeecCCCCCCCCCCCCcccCCCccccCCCCCCCCC
Q psy12394 1737 -------------ACNCHGHADKCVYDPMVDEKRLSVDIQGNYEGGGVCQECRDNTEGINCHQCVAGYYRPYGKHLNETD 1803 (1873)
Q Consensus 1737 -------------~c~c~g~~~~c~~~~~~~~~~~~c~~~~~~~~~g~c~~C~~nt~G~~C~~C~~g~~~~~~~~~~~~~ 1803 (1873)
.|.|+.|++.| ....+.|.+|+|||+|.+|+.|.+||| +|+..++.
T Consensus 740 ls~t~~~~~~~~~~c~~~~h~~~c------------------~~~~~~nt~~q~~~~~~~~~~~~~g~~---~da~~g~~ 798 (964)
T KOG3509|consen 740 LSTTGGLYPGLCEDCECNSHISQC------------------EDDLGYNTDCQNNTEGDRCELCSPGTY---GDARRGTP 798 (964)
T ss_pred ccccCCcCcccCcccccCCCcccc------------------cccccccccccccCccceeeecCCCcc---ccCccCCc
Confidence 39999999985 455789999999999999999999999 77776553
Q ss_pred -----------C------c-------ceee-eecCCCCCCCCCCCCcCCCCCccCCCCCCCC---CCCccCCCCc
Q psy12394 1804 -----------V------C-------QRQC-LCQPRVTGQTCNQPLQAHYYPTLHHYQFEIE---DGHTPAFSPS 1850 (1873)
Q Consensus 1804 -----------~------c-------~g~c-~c~~~~~g~~c~~c~~~~~~~~~~~~~~~~~---~~c~~c~~~~ 1850 (1873)
+ . .-.| .|.+|.+|.+|++++. +|++|..- ..|.++...+
T Consensus 799 ~D~~p~~~l~~~~~~~~r~~l~~~~~~~~~~~~p~~~~g~~~~~~~~-------~~~~~atdgS~~~~~~~~~~~ 866 (964)
T KOG3509|consen 799 EDCRPATALTIQCSCNNRSPLSCDGFGPGCLLCPHNTEGTTCERVKA-------GYYGFATDGSPYDCSPCLLRG 866 (964)
T ss_pred ccCCccchhhhhhhhcccCccccccCCCCcccCCCCccccchhhhcc-------ccccccCcCCccccccccCcc
Confidence 1 1 1256 4889999999999999 89998443 3677765543
No 12
>KOG3509|consensus
Probab=99.08 E-value=5.5e-09 Score=136.86 Aligned_cols=410 Identities=23% Similarity=0.374 Sum_probs=231.3
Q ss_pred CCceEEecCCccCCCCCcCCCCCcCCCCCCCCccccCCCCCCCCCCcccCCCceeeccCCcccCCCcccCCCcccCCCCC
Q psy12394 1258 YTGECICAARVIGKKCDQCEPNTFGYDPIIGCEECNCHPHGVNGTQQCDLFDGSCSCKENIVGRTCDHCVEGHWSFPYCV 1337 (1873)
Q Consensus 1258 ~tg~C~C~~~~~G~~C~~C~~g~~g~~~~~~C~~C~C~~~gs~~~~~C~~~~G~C~C~~~~~G~~C~~C~~G~~g~p~C~ 1337 (1873)
...+|.|++++.|..|+.|..++.- .++|+. ..+|.+..+ +.|+.|.+| +|.|
T Consensus 425 ~~~~c~c~~g~~G~~c~d~~~~~~~------------~~~g~y-~~t~~~~~~----------~~~~~c~pg-~g~~--- 477 (964)
T KOG3509|consen 425 EGKQCLCPPGYTGDSCEDCMNGCDR------------SPNGSY-LGTCVPIQG----------KRCEYCGPG-AGAP--- 477 (964)
T ss_pred cccceeccccccCchhhccCccccc------------cCCccc-cceEeccCC----------CcceeecCC-CCCc---
Confidence 4668899999999999988876543 344442 235544333 788889988 7732
Q ss_pred CccccCCCccccccCCCCceeeccCccccCCCCcCCCCccccCCCCCCCCccccccCCCcccccCccccccccccc----
Q psy12394 1338 PCECDLRGTTIDICNQGTAECYCKKNVYGAACDVCKEGTFDIQADNVDGCTRCFCFGKTTKCSSSNLYRSQLVYCK---- 1413 (1873)
Q Consensus 1338 ~C~C~~~gs~~~~Cd~~~G~C~C~~~~~G~~Cd~C~~g~~g~~~~~~~gC~~C~C~g~~~~C~~~~~~~~~~~~~~---- 1413 (1873)
+. ..-|++.|+.-+.+..+.++++..|+....++.++.+|+|+..+..|+++.++...+..-.
T Consensus 478 ---~~----------~~lg~~~~~a~~s~~s~~~~~~~~f~~~~t~~~~~~~c~~~~~~~s~s~~~~~~~s~~~~~~~~~ 544 (964)
T KOG3509|consen 478 ---TA----------GALGQCGCKASASGPSTSRCMPHHFGISPTNHQGCLPCFCSELTLSISSSTYRCSSVSIDYARGQ 544 (964)
T ss_pred ---cc----------hhccccCccceeccccccccccccCCcccccccccccccchhcccccccccccccchheecccch
Confidence 11 1457899999999999999999999999999999999999999999999877665431100
Q ss_pred ----cccccCCCCCCCCCCccCCCCceecccc--CCCCCccEEcCCCC-CcCCCCC--------------------CCcc
Q psy12394 1414 ----PCECSGNINRTDPGSCDSVTGECTGCLF--NSAGDSCQYCAPGY-YGNAVSL--------------------KNCV 1466 (1873)
Q Consensus 1414 ----~~~~~~~~~~~~~~~cd~~tG~C~~c~~--nt~G~~c~~c~pg~-yG~~~~~--------------------~~c~ 1466 (1873)
.|.-+.-.-...+...+...++=..... ...|..-+|-.|-- -+++++. .+.+
T Consensus 545 ~~~i~~~~~~l~~r~~~l~~~~~i~~~~s~~v~a~~~~~~~~~~~P~~~vad~vs~~g~~~~~~~s~~~~gs~e~~~~~v 624 (964)
T KOG3509|consen 545 FDLIELLRPDLRQRYASLGRDQLINQAISFSVSAEAGGLLLRWSLPAKPVADKVSPLGGALSQTHSYKGNGSSERSADSV 624 (964)
T ss_pred hhhhhhccccccccccccceeeeccccceeeeeeeccceEEEecCCCCCCcceeccccceeeeeeccCcCCCcccccccc
Confidence 1111111011111112221111000000 11123334444422 2443310 0000
Q ss_pred cCCCCC--------CcccCc----------cccCCCCCCCcccccCCCcccccccccCCCCcCCCCCCCCCCccCCCCCC
Q psy12394 1467 KCNCNP--------EGVLKT----------FAGCGSLPAGELCECKPKVQGRICDECRPLYWNLKASNPDGCEDCDCYTL 1528 (1873)
Q Consensus 1467 ~c~c~~--------~~~~~~----------~~~~~~~~~~~~c~C~~~v~G~~Cd~C~~~y~~~~~~~~~~C~~C~C~~~ 1528 (1873)
+=+-.+ .+.... +.++.-..+.+-..-+..+.+..=-..+..+-.. .++..|..+.+...
T Consensus 625 ~~~~~~l~~~~~~~sl~~~d~~~~vk~~~~~a~~~~~~~~~~~~~~m~~a~~~~~l~~st~~~~--~~p~~~~~~~~~ga 702 (964)
T KOG3509|consen 625 PRNDPALQVLHRAPSLADNDNKSAVKKIEGSAHRVDGIRARGQHILMTVADTTTVLIKSTVSTD--CTPSECSSANLEGA 702 (964)
T ss_pred cccccccccccccCccccccchhhhcccccccccccceecCCceeccccccccceeeeecccCC--CChHHhhhhccCcc
Confidence 000000 000000 0110000000001111111111100011111000 11223444555333
Q ss_pred CCcCCc--ccccCCCCcccccCCCCcCCccccCCCcccc--CCCCcCCccccccCCCccccccccccccccccEEEeeee
Q psy12394 1529 GTIGGI--KNCNPKSGQCVCKATAMNRKCDACVDGTYAL--QDNNLFGCTECACDIGGSINNLCNKSLIWMSSFRMVSFT 1604 (1873)
Q Consensus 1529 ~s~~g~--~~c~~~tgqC~C~~g~~g~~Cd~C~~g~~~~--~~~~~~gc~~c~C~~~~s~~~~c~~~~~~~~~v~l~e~~ 1604 (1873)
..+.+. ..++..+.||+|.+++.|++|..|.+++-.. ..-.+..+..|.|..|.+ .|
T Consensus 703 ~~~~~g~~~~~~~~~~~C~c~~g~~G~~ce~c~e~~~ls~t~~~~~~~~~~c~~~~h~~---~c---------------- 763 (964)
T KOG3509|consen 703 LCYGGGKTDIIAAEVEQCQCPKGLVGTSCEDCAEGYTLSTTGGLYPGLCEDCECNSHIS---QC---------------- 763 (964)
T ss_pred cccCCCCCchhhhhccccccCccccCcccccccccccccccCCcCcccCcccccCCCcc---cc----------------
Confidence 222221 1236788899999999999999999998721 234445555554433321 11
Q ss_pred ecccccccccccceeecccccCCCccccceEeccCccccccccCCCCCCCCCccccCCCCCcCCCCCCCccccccccCCC
Q psy12394 1605 KLSSQSNIVLPGLVVEQFLNLCPTEFDMDVLIQNGQFYEAQLPDCQHNTLGDQCEQCQPGYHGNATQGTMADCLICACPL 1684 (1873)
Q Consensus 1605 ~l~~~~~~~~~~~~~~~~~~~cp~~y~g~~~~~~g~~~g~c~~~C~~~t~G~~Ce~C~~gy~g~a~~g~~~~c~~c~c~~ 1684 (1873)
..-++++. +|+|+|.|++|+.|.+|++++++++++.|+++ ++++
T Consensus 764 ----------------------------------~~~~~~nt-~~q~~~~~~~~~~~~~g~~~da~~g~~~D~~p-~~~l 807 (964)
T KOG3509|consen 764 ----------------------------------EDDLGYNT-DCQNNTEGDRCELCSPGTYGDARRGTPEDCRP-ATAL 807 (964)
T ss_pred ----------------------------------cccccccc-cccccCccceeeecCCCccccCccCCcccCCc-cchh
Confidence 11235564 89999999999999999999999999999999 7766
Q ss_pred CcCCCccccCccccCCCccccCCccccccCCCCCcC-CCCCCCCCCCCcccccC---------------CCCCCCCCccc
Q psy12394 1685 PITSNNFASGCDVSEDGCHMNGTLNFYCEPTSGQQC-PCKENYAGDHCDTCAQA---------------CNCHGHADKCV 1748 (1873)
Q Consensus 1685 ~~~~n~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~C-~C~~gy~G~sCe~Ca~~---------------c~c~g~~~~c~ 1748 (1873)
.+..+-+ ...+++..+ ....| .||+|++|+.||+++++ +...+
T Consensus 808 ~~~~~~~-~r~~l~~~~--------------~~~~~~~~p~~~~g~~~~~~~~~~~~~atdgS~~~~~~~~~~~------ 866 (964)
T KOG3509|consen 808 TIQCSCN-NRSPLSCDG--------------FGPGCLLCPHNTEGTTCERVKAGYYGFATDGSPYDCSPCLLRG------ 866 (964)
T ss_pred hhhhhhc-ccCcccccc--------------CCCCcccCCCCccccchhhhccccccccCcCCccccccccCcc------
Confidence 6653222 222333222 12356 69999999999999882 33333
Q ss_pred cChhhhcccccccccCccCCCeecCCCCCCCCCCCCcccCCCcccc
Q psy12394 1749 YDPMVDEKRLSVDIQGNYEGGGVCQECRDNTEGINCHQCVAGYYRP 1794 (1873)
Q Consensus 1749 ~~~~~~~~~~~c~~~~~~~~~g~c~~C~~nt~G~~C~~C~~g~~~~ 1794 (1873)
.+.|.+.+..+ .-.|.-....+.|++...|..++|++
T Consensus 867 --------~~~~~~~~r~p-~~~~~~~p~~~q~~~~~~e~~~~~~~ 903 (964)
T KOG3509|consen 867 --------ASDCIVSGRGP-QVTCRIPPQGLQGRNQNEEATGYYRD 903 (964)
T ss_pred --------ccceeeccCCC-CCCCCCCCccccccccccccCccccc
Confidence 22355555554 34677788889999999999999943
No 13
>KOG1225|consensus
Probab=98.90 E-value=4.3e-09 Score=131.36 Aligned_cols=168 Identities=29% Similarity=0.737 Sum_probs=114.2
Q ss_pred CCceecCCCCCCCCCCcc--CCCCccCCCCCcccCCCCCCcCCccCCCCCcccCCCCccCCCCCC--CCCCcCCCCCCcc
Q psy12394 570 TNGSCLCKEGYTGARCDQ--CKAGYYGYPDCKLCGCSAVGSSSTACDVSGKCPCLVNFGGKTCSQ--CSPGFYQYPQCKA 645 (1873)
Q Consensus 570 ~~g~C~C~~G~~G~~Ce~--C~~g~~~~~~C~~c~C~~~Gt~~~~C~~~g~C~C~~G~~G~~Ce~--C~~g~~g~~~C~~ 645 (1873)
..+.+.+..+++|..|.+ +..-++...-+...++...+- ...+.|.|..+|+|..|+. |+.+-++
T Consensus 190 ~~~~~l~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-----~~~~ic~c~~~~~g~~c~~~~C~~~c~~------ 258 (525)
T KOG1225|consen 190 YFGNCLSGISASGETCNQLGCNDDCFRTGRCREGRCFCTAG-----FFDGICECPEGYFGPLCSTIYCPGGCTG------ 258 (525)
T ss_pred eecccccccCcchhhhhcccCCccceeccccccCccccccc-----ccCceeecCCceeCCccccccCCCCCcc------
Confidence 357899999999998864 333223222333333221110 0125889999999998874 5444322
Q ss_pred CCCCCCCCCCcccCCCcceecCCCCCCCCCcc--cCCCccCCCCcccCCCCCCCCCCcccCCCCceeeCCCcccCCCCc-
Q psy12394 646 CNCDSHGNIGVSCDDDGKCQCEKNFGGDRCER--CKEGLYNFPICEACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCER- 722 (1873)
Q Consensus 646 c~C~~~~~~gg~C~~~g~C~C~~g~~G~~Ce~--C~~g~~g~~~C~~C~C~~~g~~~~~C~~~g~C~C~~g~~G~~Ce~- 722 (1873)
++.|. .|+|+|++||+|.+|++ |... |++ ++.+ .+++|+|.+||+|..|+.
T Consensus 259 ---------~g~c~-~G~CIC~~Gf~G~dC~e~~Cp~~-----------cs~----~g~~-~~g~CiC~~g~~G~dCs~~ 312 (525)
T KOG1225|consen 259 ---------RGQCV-EGRCICPPGFTGDDCDELVCPVD-----------CSG----GGVC-VDGECICNPGYSGKDCSIR 312 (525)
T ss_pred ---------cceEe-CCeEeCCCCCcCCCCCcccCCcc-----------cCC----Ccee-cCCEeecCCCccccccccc
Confidence 46666 69999999999999987 4332 322 3333 356999999999999986
Q ss_pred -CCCCCccCCCCcCCCCCCCCCccCccccccCCCCCceecCCCcccCCccccCCCCcCCCCCCCCCCCcCcCCCCCcccC
Q psy12394 723 -CKEGLYNFPICEECNCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDECRPLYWNLKASNPDGCEDCDCYTLGTIGG 801 (1873)
Q Consensus 723 -C~~g~~g~p~C~~C~C~~~Gs~~~~~~C~~~~~~g~C~C~~g~~G~~C~~C~~g~~g~~~~~~~~C~~c~C~~~Gt~~~ 801 (1873)
|.. +|.+.|.|. .+.|.|.+||+|..|++ + .|.++
T Consensus 313 ~cpa-----------dC~g~G~Ci----------~G~C~C~~Gy~G~~C~~------------~------~C~~~----- 348 (525)
T KOG1225|consen 313 RCPA-----------DCSGHGKCI----------DGECLCDEGYTGELCIQ------------R------ACSGG----- 348 (525)
T ss_pred cCCc-----------cCCCCCccc----------CCceEeCCCCcCCcccc------------c------ccCCC-----
Confidence 543 677777753 27899999999999976 1 24444
Q ss_pred CcccCCCCCceecCCCCccCC
Q psy12394 802 IKNCNPKSGQCVCKATAMNRK 822 (1873)
Q Consensus 802 ~~~C~~~tg~C~C~~g~~G~~ 822 (1873)
+.| +.| |.|+.||.|.+
T Consensus 349 -g~c--v~g-C~C~~Gw~G~d 365 (525)
T KOG1225|consen 349 -GQC--VNG-CKCKKGWRGPD 365 (525)
T ss_pred -cee--ccC-ceeccCccCCC
Confidence 355 457 99999999987
No 14
>KOG1225|consensus
Probab=98.81 E-value=1.2e-08 Score=127.33 Aligned_cols=131 Identities=33% Similarity=0.813 Sum_probs=95.2
Q ss_pred ceecCCCCcCCCCcccCCcccCCCCCCCCCCCCCCCCCceecCCCCCcccCCCCCccCCCccCCCCCCCCCCCCCCCcCC
Q psy12394 236 KCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFPTCSPCECNA 315 (1873)
Q Consensus 236 ~C~C~~G~~G~~Ce~C~~g~~g~~~C~~c~C~~~gt~~~~C~~~~G~~C~C~~g~~G~~Ce~C~~Gf~g~~~C~~c~C~~ 315 (1873)
.|.|..+|+|+.|+. -.|.++.+..+.|. .| +|+|++||+|.+|+. ..|..- |.+
T Consensus 235 ic~c~~~~~g~~c~~-------------~~C~~~c~~~g~c~--~G-~CIC~~Gf~G~dC~e--------~~Cp~~-cs~ 289 (525)
T KOG1225|consen 235 ICECPEGYFGPLCST-------------IYCPGGCTGRGQCV--EG-RCICPPGFTGDDCDE--------LVCPVD-CSG 289 (525)
T ss_pred eeecCCceeCCcccc-------------ccCCCCCcccceEe--CC-eEeCCCCCcCCCCCc--------ccCCcc-cCC
Confidence 566666666666653 34444444456675 46 999999999999986 334322 544
Q ss_pred CCCCCCcccCCCcccccCCCcccCCCccCCCCCcCCCCCCcCCCCCCCCCceecCCCCeeeeCCCccCCCCccCCCCccC
Q psy12394 316 VGSLSDLCEVDSGNCTCRNNFAGRTCDSCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFG 395 (1873)
Q Consensus 316 ~gs~~~~C~~~~g~C~C~~G~~G~~Ce~C~~G~~g~~~C~~C~c~~c~n~g~C~~~~g~C~C~~G~tG~~Ce~C~~g~~~ 395 (1873)
++ .+ ..++|+|++||+|..|++ ..|. ..|.+.|.|. .++|.|.+||+|..|+.
T Consensus 290 ~g----~~--~~g~CiC~~g~~G~dCs~--------~~cp----adC~g~G~Ci--~G~C~C~~Gy~G~~C~~------- 342 (525)
T KOG1225|consen 290 GG----VC--VDGECICNPGYSGKDCSI--------RRCP----ADCSGHGKCI--DGECLCDEGYTGELCIQ------- 342 (525)
T ss_pred Cc----ee--cCCEeecCCCcccccccc--------ccCC----ccCCCCCccc--CCceEeCCCCcCCcccc-------
Confidence 32 22 467999999999999985 2222 3466788898 88999999999999996
Q ss_pred CCCCCCCCCCCCcEeeeeccCCCCCeeeCCCCcccCC
Q psy12394 396 YPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDH 432 (1873)
Q Consensus 396 ~~~C~~~~C~n~gtc~~~cd~~~g~~C~C~~g~~G~~ 432 (1873)
. +|.+++.| +++ |.|+.||.|.+
T Consensus 343 ~------~C~~~g~c------v~g--C~C~~Gw~G~d 365 (525)
T KOG1225|consen 343 R------ACSGGGQC------VNG--CKCKKGWRGPD 365 (525)
T ss_pred c------ccCCCcee------ccC--ceeccCccCCC
Confidence 1 38888876 345 99999999988
No 15
>KOG1219|consensus
Probab=98.70 E-value=1.6e-08 Score=134.35 Aligned_cols=110 Identities=21% Similarity=0.547 Sum_probs=0.0
Q ss_pred CCCCCCCcCCCCCCCCcccCCCcccccCCCcccCCCccCCCCCcCCCCCCcCCCCCCCCCceecCCCC--eeeeCCCccC
Q psy12394 306 PTCSPCECNAVGSLSDLCEVDSGNCTCRNNFAGRTCDSCADGYYNYPRCTSCQCAFHYATGNCAEGTG--KCECRPEYTK 383 (1873)
Q Consensus 306 ~~C~~c~C~~~gs~~~~C~~~~g~C~C~~G~~G~~Ce~C~~G~~g~~~C~~C~c~~c~n~g~C~~~~g--~C~C~~G~tG 383 (1873)
+.|...+|+++|++... ....++|.|++-|+|.+||. .-++|..+||.+||+|....+ .|.|+.||||
T Consensus 3865 d~C~~npCqhgG~C~~~-~~ggy~CkCpsqysG~~CEi---------~~epC~snPC~~GgtCip~~n~f~CnC~~gyTG 3934 (4289)
T KOG1219|consen 3865 DPCNDNPCQHGGTCISQ-PKGGYKCKCPSQYSGNHCEI---------DLEPCASNPCLTGGTCIPFYNGFLCNCPNGYTG 3934 (4289)
T ss_pred cccccCcccCCCEecCC-CCCceEEeCcccccCccccc---------ccccccCCCCCCCCEEEecCCCeeEeCCCCccC
Q ss_pred CCCc-cCCCCccCCCCCCCCCCCCCcEeeeeccCCCCCeeeCCCCcccCCCC
Q psy12394 384 PDCN-SCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCD 434 (1873)
Q Consensus 384 ~~Ce-~C~~g~~~~~~C~~~~C~n~gtc~~~cd~~~g~~C~C~~g~~G~~Ce 434 (1873)
.+|| . |+++|+..+|.++|.| .+-...|.|.|.+||.|..|.
T Consensus 3935 ~~Ce~~------Gi~eCs~n~C~~gg~C---~n~~gsf~CncT~g~~gr~c~ 3977 (4289)
T KOG1219|consen 3935 KRCEAR------GISECSKNVCGTGGQC---INIPGSFHCNCTPGILGRTCC 3977 (4289)
T ss_pred ceeecc------cccccccccccCCcee---eccCCceEeccChhHhcccCc
No 16
>KOG1219|consensus
Probab=98.60 E-value=4.7e-08 Score=130.26 Aligned_cols=108 Identities=30% Similarity=0.754 Sum_probs=0.0
Q ss_pred CCCCccCCCCCCCCCCeeecCCC---ceecCCCCcCCCCcccCCcccCCCCCCCCCCCCCCCCCceecCC-CCCcccCCC
Q psy12394 213 TDVCQPCQCAFHYATGNCAEGTG---KCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPA-SGQQCPCKE 288 (1873)
Q Consensus 213 ~~~C~~C~C~~~~n~g~C~~~~g---~C~C~~G~~G~~Ce~C~~g~~g~~~C~~c~C~~~gt~~~~C~~~-~G~~C~C~~ 288 (1873)
+++|..-+|+ ++|+|...+. +|.|++.|+|.+||. +...|.+.||. .|++|+.. +||.|.|+.
T Consensus 3864 ~d~C~~npCq---hgG~C~~~~~ggy~CkCpsqysG~~CEi------~~epC~snPC~----~GgtCip~~n~f~CnC~~ 3930 (4289)
T KOG1219|consen 3864 TDPCNDNPCQ---HGGTCISQPKGGYKCKCPSQYSGNHCEI------DLEPCASNPCL----TGGTCIPFYNGFLCNCPN 3930 (4289)
T ss_pred ccccccCccc---CCCEecCCCCCceEEeCcccccCccccc------ccccccCCCCC----CCCEEEecCCCeeEeCCC
Q ss_pred CCccCCCccCCCCCCCCCCCCCCCcCCCCCCCCcccCCCc--ccccCCCcccCCCc
Q psy12394 289 NYAGDHCDTCAQGYYNFPTCSPCECNAVGSLSDLCEVDSG--NCTCRNNFAGRTCD 342 (1873)
Q Consensus 289 g~~G~~Ce~C~~Gf~g~~~C~~c~C~~~gs~~~~C~~~~g--~C~C~~G~~G~~Ce 342 (1873)
||||.+||. .|..+|+...|.+ ++.|.+..| .|.|.+||.|+.|.
T Consensus 3931 gyTG~~Ce~-----~Gi~eCs~n~C~~----gg~C~n~~gsf~CncT~g~~gr~c~ 3977 (4289)
T KOG1219|consen 3931 GYTGKRCEA-----RGISECSKNVCGT----GGQCINIPGSFHCNCTPGILGRTCC 3977 (4289)
T ss_pred CccCceeec-----ccccccccccccC----CceeeccCCceEeccChhHhcccCc
No 17
>KOG1217|consensus
Probab=98.40 E-value=1.1e-05 Score=103.84 Aligned_cols=209 Identities=28% Similarity=0.669 Sum_probs=125.2
Q ss_pred eeCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCc--cCCCCCCCCCCeeecCC--CceecCCCCcCCCCcc-------
Q psy12394 182 VCQECRDNTEGINCHQRVAGYYRPYGKHLNETDVCQ--PCQCAFHYATGNCAEGT--GKCECRPEYTKPDCNS------- 250 (1873)
Q Consensus 182 ~C~~C~~~~~G~~Ce~C~~g~~~~~~~~~~~~~~C~--~C~C~~~~n~g~C~~~~--g~C~C~~G~~G~~Ce~------- 250 (1873)
.| .|..+|.|..|+. ..+.|. +..|. ++++|.+.. +.|.|+++|+|..|+.
T Consensus 153 ~c-~C~~g~~~~~~~~--------------~~~~C~~~~~~c~---~~~~C~~~~~~~~C~c~~~~~~~~~~~~~~~~~c 214 (487)
T KOG1217|consen 153 RC-SCTEGYEGEPCET--------------DLDECIQYSSPCQ---NGGTCVNTGGSYLCSCPPGYTGSTCETTGNGGTC 214 (487)
T ss_pred ee-eeCCCcccccccc--------------cccccccCCCCcC---CCcccccCCCCeeEeCCCCccCCcCcCCCCCceE
Confidence 45 5677777776652 113443 22233 667776654 3688888888887763
Q ss_pred -------cCCcccCCCCCCC-CCCCCCCCCCceecCC-CCCcccCCCCCccCCCccCCCCCCCCCCCCCCC-cCCCCCCC
Q psy12394 251 -------CAFGYFGYPNCEP-CKCHMNGTLDFYCEPA-SGQQCPCKENYAGDHCDTCAQGYYNFPTCSPCE-CNAVGSLS 320 (1873)
Q Consensus 251 -------C~~g~~g~~~C~~-c~C~~~gt~~~~C~~~-~G~~C~C~~g~~G~~Ce~C~~Gf~g~~~C~~c~-C~~~gs~~ 320 (1873)
+.+++.+...... ..|... . +.|... .+|+|.|++||++..+..| ..++.|..-. |.++
T Consensus 215 ~~~~~~~~~~g~~~~~c~~~~~~~~~~--~-~~c~~~~~~~~C~~~~g~~~~~~~~~----~~~~~C~~~~~c~~~---- 283 (487)
T KOG1217|consen 215 VDSVACSCPPGARGPECEVSIVECASG--D-GTCVNTVGSYTCRCPEGYTGDACVTC----VDVDSCALIASCPNG---- 283 (487)
T ss_pred ecceeccCCCCCCCCCcccccccccCC--C-CcccccCCceeeeCCCCcccccccee----eeccccCCCCccCCC----
Confidence 2333332221111 122211 1 344433 4579999999999985110 0125566543 6664
Q ss_pred CcccCCC--cccccCCCcccCCCccCCCCCcCCCCCCc-CCCCCCCCCceecC----CCCeeeeCCCccCCCCccCCCCc
Q psy12394 321 DLCEVDS--GNCTCRNNFAGRTCDSCADGYYNYPRCTS-CQCAFHYATGNCAE----GTGKCECRPEYTKPDCNSCAFGY 393 (1873)
Q Consensus 321 ~~C~~~~--g~C~C~~G~~G~~Ce~C~~G~~g~~~C~~-C~c~~c~n~g~C~~----~~g~C~C~~G~tG~~Ce~C~~g~ 393 (1873)
.+|.... +.|.|++||+|..|..+. ....|.. -...+|.++++|.. ....|.|.++|+|..|+.
T Consensus 284 ~~C~~~~~~~~C~C~~g~~g~~~~~~~----~~~~C~~~~~~~~c~~g~~C~~~~~~~~~~C~c~~~~~g~~C~~----- 354 (487)
T KOG1217|consen 284 GTCVNVPGSYRCTCPPGFTGRLCTECV----DVDECSPRNAGGPCANGGTCNTLGSFGGFRCACGPGFTGRRCED----- 354 (487)
T ss_pred CeeecCCCcceeeCCCCCCCCCCcccc----ccccccccccCCcCCCCcccccCCCCCCCCcCCCCCCCCCcccc-----
Confidence 3554443 689999999999981111 0012221 12345778888832 234799999999999995
Q ss_pred cCCCCCCCCCCCCCcEeeeeccCCCCCeeeCCCCcccC
Q psy12394 394 FGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGD 431 (1873)
Q Consensus 394 ~~~~~C~~~~C~n~gtc~~~cd~~~g~~C~C~~g~~G~ 431 (1873)
..+.|...+|.++++|... ....+.|.|+.+|.|.
T Consensus 355 -~~~~C~~~~~~~~~~c~~~--~~~~~~c~~~~~~~~~ 389 (487)
T KOG1217|consen 355 -SNDECASSPCCPGGTCVNE--TPGSYRCACPAGFAGK 389 (487)
T ss_pred -CCccccCCccccCCEeccC--CCCCeEecCCCccccC
Confidence 1147888889999997421 3556899999999986
No 18
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=98.40 E-value=2.8e-07 Score=78.80 Aligned_cols=40 Identities=43% Similarity=1.120 Sum_probs=36.9
Q ss_pred ccCCCCCCCCCCcccCCCceeeccCCcccCCCcccCCCccc
Q psy12394 1292 CNCHPHGVNGTQQCDLFDGSCSCKENIVGRTCDHCVEGHWS 1332 (1873)
Q Consensus 1292 C~C~~~gs~~~~~C~~~~G~C~C~~~~~G~~C~~C~~G~~g 1332 (1873)
|+|++.|+. +..|++.+|||.|+++++|++||+|++||||
T Consensus 1 C~C~~~G~~-~~~C~~~~G~C~C~~~~~G~~C~~C~~g~~g 40 (46)
T smart00180 1 CDCDPGGSA-SGTCDPDTGQCECKPNVTGRRCDRCAPGYYG 40 (46)
T ss_pred CcCCCCCCC-CCcccCCCCEEECCCCCCCCCCCcCCCCcCC
Confidence 689988875 3789999999999999999999999999999
No 19
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=98.39 E-value=2.7e-07 Score=80.45 Aligned_cols=43 Identities=44% Similarity=1.070 Sum_probs=40.0
Q ss_pred cccCCCCCCCCCCcccCCCceeeccCCcccCCCcccCCCcccCC
Q psy12394 1291 ECNCHPHGVNGTQQCDLFDGSCSCKENIVGRTCDHCVEGHWSFP 1334 (1873)
Q Consensus 1291 ~C~C~~~gs~~~~~C~~~~G~C~C~~~~~G~~C~~C~~G~~g~p 1334 (1873)
+|+|+++|+. +..|++.+|+|.|+++++|++||+|++|||++|
T Consensus 1 ~C~C~~~g~~-~~~C~~~~G~C~C~~~~~G~~C~~C~~g~~~~~ 43 (50)
T cd00055 1 PCDCNGHGSL-SGQCDPGTGQCECKPNTTGRRCDRCAPGYYGLP 43 (50)
T ss_pred CCcCcCCCCC-CccccCCCCEEeCCCcCCCCCCCCCCCCCccCC
Confidence 5899999975 478999999999999999999999999999987
No 20
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=98.37 E-value=1.9e-07 Score=81.10 Aligned_cols=43 Identities=42% Similarity=1.095 Sum_probs=38.0
Q ss_pred ccCCCCCCCCCCcccCCCceeeccCCcccCCCcccCCCcccCCC
Q psy12394 1292 CNCHPHGVNGTQQCDLFDGSCSCKENIVGRTCDHCVEGHWSFPY 1335 (1873)
Q Consensus 1292 C~C~~~gs~~~~~C~~~~G~C~C~~~~~G~~C~~C~~G~~g~p~ 1335 (1873)
|+|+++++. +..|++.+|+|.|+++|+|++||+|++|||++|.
T Consensus 1 C~C~~~~~~-~~~C~~~~G~C~C~~~~~G~~C~~C~~g~~~~~~ 43 (49)
T PF00053_consen 1 CDCNPHGSS-SQTCDPSTGQCVCKPGTTGPRCDQCKPGYFGLPS 43 (49)
T ss_dssp ESSTTCCBC-CSSEEETCEEESBSTTEESTTS-EE-TTEECSTT
T ss_pred CcCcCCCCC-CCcccCCCCEEeccccccCCcCcCCCCccccccC
Confidence 689999875 5899999999999999999999999999999986
No 21
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=98.33 E-value=5.2e-07 Score=78.74 Aligned_cols=49 Identities=37% Similarity=0.980 Sum_probs=43.4
Q ss_pred CccccCCCccccccCCCCceeeccCccccCCCCcCCCCccccCCCCCCCC
Q psy12394 1338 PCECDLRGTTIDICNQGTAECYCKKNVYGAACDVCKEGTFDIQADNVDGC 1387 (1873)
Q Consensus 1338 ~C~C~~~gs~~~~Cd~~~G~C~C~~~~~G~~Cd~C~~g~~g~~~~~~~gC 1387 (1873)
+|.|+..|+....|++.+|+|.|+++|+|++||+|++|||+++.. +.+|
T Consensus 1 ~C~C~~~g~~~~~C~~~~G~C~C~~~~~G~~C~~C~~g~~~~~~~-~~~C 49 (50)
T cd00055 1 PCDCNGHGSLSGQCDPGTGQCECKPNTTGRRCDRCAPGYYGLPSQ-GGGC 49 (50)
T ss_pred CCcCcCCCCCCccccCCCCEEeCCCcCCCCCCCCCCCCCccCCCC-CCCC
Confidence 588999998888999999999999999999999999999998754 4444
No 22
>KOG1217|consensus
Probab=98.33 E-value=1.8e-05 Score=101.80 Aligned_cols=148 Identities=29% Similarity=0.727 Sum_probs=95.8
Q ss_pred CCceecCCCCcCCCCcc---cCCcccCCCCCCCCCCCCCCCCCceecC----CCCCcccCCCCCccCCCccCCCCCCCCC
Q psy12394 234 TGKCECRPEYTKPDCNS---CAFGYFGYPNCEPCKCHMNGTLDFYCEP----ASGQQCPCKENYAGDHCDTCAQGYYNFP 306 (1873)
Q Consensus 234 ~g~C~C~~G~~G~~Ce~---C~~g~~g~~~C~~c~C~~~gt~~~~C~~----~~G~~C~C~~g~~G~~Ce~C~~Gf~g~~ 306 (1873)
.+.|.|++||.|..|+. |...-. .+. ..+.|.. ...|.|.|..||.|..|+... .
T Consensus 109 ~~~c~c~~g~~~~~~~~~~~C~~~~~--------~~~----~~~~c~~~~~~~~~~~c~C~~g~~~~~~~~~~------~ 170 (487)
T KOG1217|consen 109 SYECTCPPGYQGTPCEGECECVTGPG--------VCC----IDGSCSNGPGSVGPFRCSCTEGYEGEPCETDL------D 170 (487)
T ss_pred CceeeCCCccccCcCCcceeecCCCC--------Cee----CchhhcCCCCCCCceeeeeCCCcccccccccc------c
Confidence 45899999999999986 433211 011 1223332 234789999999999998511 3
Q ss_pred CCC--CCCcCCCCCCCCcccCCCcccccCCCcccCCCccCCCCCcCCCCCCcCCCCCCCCCceecCCCCeeeeCCCccCC
Q psy12394 307 TCS--PCECNAVGSLSDLCEVDSGNCTCRNNFAGRTCDSCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCECRPEYTKP 384 (1873)
Q Consensus 307 ~C~--~c~C~~~gs~~~~C~~~~g~C~C~~G~~G~~Ce~C~~G~~g~~~C~~C~c~~c~n~g~C~~~~g~C~C~~G~tG~ 384 (1873)
.|. ...|.+++++... ...+.|.|+++|.|..|+.- .++++|... ..|.+.++|.+.
T Consensus 171 ~C~~~~~~c~~~~~C~~~--~~~~~C~c~~~~~~~~~~~~------------------~~~~~c~~~-~~~~~~~g~~~~ 229 (487)
T KOG1217|consen 171 ECIQYSSPCQNGGTCVNT--GGSYLCSCPPGYTGSTCETT------------------GNGGTCVDS-VACSCPPGARGP 229 (487)
T ss_pred ccccCCCCcCCCcccccC--CCCeeEeCCCCccCCcCcCC------------------CCCceEecc-eeccCCCCCCCC
Confidence 455 3347765543322 12368999999999999862 234555444 678999999999
Q ss_pred CCccCCCCccCCCCCCCCCCCCCcEeeeeccCCCCCeeeCCCCcccCCC
Q psy12394 385 DCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHC 433 (1873)
Q Consensus 385 ~Ce~C~~g~~~~~~C~~~~C~n~gtc~~~cd~~~g~~C~C~~g~~G~~C 433 (1873)
.|+. ....|... + ++|. +...++.|.|++||++..+
T Consensus 230 ~c~~------~~~~~~~~---~-~~c~---~~~~~~~C~~~~g~~~~~~ 265 (487)
T KOG1217|consen 230 ECEV------SIVECASG---D-GTCV---NTVGSYTCRCPEGYTGDAC 265 (487)
T ss_pred Cccc------ccccccCC---C-Cccc---ccCCceeeeCCCCcccccc
Confidence 9884 22333322 3 5552 4455689999999999874
No 23
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=98.32 E-value=2.2e-07 Score=80.82 Aligned_cols=48 Identities=35% Similarity=0.916 Sum_probs=40.8
Q ss_pred ccccCCCccccccCCCCceeeccCccccCCCCcCCCCccccCCCCCCC
Q psy12394 1339 CECDLRGTTIDICNQGTAECYCKKNVYGAACDVCKEGTFDIQADNVDG 1386 (1873)
Q Consensus 1339 C~C~~~gs~~~~Cd~~~G~C~C~~~~~G~~Cd~C~~g~~g~~~~~~~g 1386 (1873)
|+|+..++....|++.+|+|.|+++|+|++||+|+++||+++...+.+
T Consensus 1 C~C~~~~~~~~~C~~~~G~C~C~~~~~G~~C~~C~~g~~~~~~~~~~~ 48 (49)
T PF00053_consen 1 CDCNPHGSSSQTCDPSTGQCVCKPGTTGPRCDQCKPGYFGLPSDPPCG 48 (49)
T ss_dssp ESSTTCCBCCSSEEETCEEESBSTTEESTTS-EE-TTEECSTTSGCCS
T ss_pred CcCcCCCCCCCcccCCCCEEeccccccCCcCcCCCCccccccCCCCCC
Confidence 679999988899999999999999999999999999999997644444
No 24
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=98.27 E-value=7.7e-07 Score=76.13 Aligned_cols=40 Identities=40% Similarity=1.000 Sum_probs=37.6
Q ss_pred ccccCCCccccccCCCCceeeccCccccCCCCcCCCCccc
Q psy12394 1339 CECDLRGTTIDICNQGTAECYCKKNVYGAACDVCKEGTFD 1378 (1873)
Q Consensus 1339 C~C~~~gs~~~~Cd~~~G~C~C~~~~~G~~Cd~C~~g~~g 1378 (1873)
|+|++.|+....|++.+|+|.||++|+|++||+|++|||+
T Consensus 1 C~C~~~G~~~~~C~~~~G~C~C~~~~~G~~C~~C~~g~~g 40 (46)
T smart00180 1 CDCDPGGSASGTCDPDTGQCECKPNVTGRRCDRCAPGYYG 40 (46)
T ss_pred CcCCCCCCCCCcccCCCCEEECCCCCCCCCCCcCCCCcCC
Confidence 6788888877899999999999999999999999999998
No 25
>KOG1226|consensus
Probab=98.21 E-value=7.7e-06 Score=103.76 Aligned_cols=85 Identities=25% Similarity=0.593 Sum_probs=47.4
Q ss_pred CceecCCCcccCCccccCCCCcCCCCCCCCCCCcCcCCCCCcccCCcccCCCCCceecCCC-CccCCCCCCCCCCccCcC
Q psy12394 757 ELCECKPKVQGRICDECRPLYWNLKASNPDGCEDCDCYTLGTIGGIKNCNPKSGQCVCKAT-AMNRKCDACMDGTYALQD 835 (1873)
Q Consensus 757 g~C~C~~g~~G~~C~~C~~g~~g~~~~~~~~C~~c~C~~~Gt~~~~~~C~~~tg~C~C~~g-~~G~~C~~C~~g~~g~~~ 835 (1873)
|+|+|.+||+|..|+ |. ...+.|.+ .+++.|++.+.| .-|.|.|-.. |.|..||.|..-.-- +
T Consensus 566 G~CvC~~GwtG~~C~-C~--------~std~C~~---~~G~iCSGrG~C--~Cg~C~C~~~~~sG~~CE~cptc~~~--C 629 (783)
T KOG1226|consen 566 GRCVCNPGWTGSACN-CP--------LSTDTCES---SDGQICSGRGTC--ECGRCKCTDPPYSGEFCEKCPTCPDP--C 629 (783)
T ss_pred CcEEcCCCCccCCCC-CC--------CCCccccC---CCCceeCCCcee--eCCceEcCCCCcCcchhhcCCCCCCc--c
Confidence 678888888888874 22 12233433 133445555566 3578888776 999999987643211 2
Q ss_pred CCCCCCccCcCCCCCccccccc
Q psy12394 836 NNLFGCTECACDIGGSINNLCN 857 (1873)
Q Consensus 836 ~~~~gC~~C~C~~gg~~~~~C~ 857 (1873)
....-|.+|.=...|.....|.
T Consensus 630 ~~~~~CveC~~~~~g~~~~~C~ 651 (783)
T KOG1226|consen 630 AENKSCVECQAFETGPVGDTCV 651 (783)
T ss_pred cccccchhhcccccccccchHH
Confidence 3333344444444444444443
No 26
>KOG1226|consensus
Probab=97.75 E-value=9.8e-05 Score=94.11 Aligned_cols=131 Identities=30% Similarity=0.866 Sum_probs=80.6
Q ss_pred CCcccCCCCCccCCCccCCCCCCCC----CCCCCC----CcCCCCCCCCcccCCCcccccCCCcc----cCCCccCCCCC
Q psy12394 281 GQQCPCKENYAGDHCDTCAQGYYNF----PTCSPC----ECNAVGSLSDLCEVDSGNCTCRNNFA----GRTCDSCADGY 348 (1873)
Q Consensus 281 G~~C~C~~g~~G~~Ce~C~~Gf~g~----~~C~~c----~C~~~gs~~~~C~~~~g~C~C~~G~~----G~~Ce~C~~G~ 348 (1873)
| +|.|.+||.|.+|| |..+-+.. ..|+.- .|.+. +.|. =|+|.|.+... |.+||- ..
T Consensus 478 G-~C~C~~G~~G~~CE-C~~~~~ss~~~~~~Cr~~~~~~vCSgr----G~C~--CGqC~C~~~~~~~i~G~fCEC-Dn-- 546 (783)
T KOG1226|consen 478 G-QCRCDEGWLGKKCE-CSTDELSSSEEEDKCRENSDSPVCSGR----GDCV--CGQCVCHKPDNGKIYGKFCEC-DN-- 546 (783)
T ss_pred c-ceecCCCCCCCccc-CCccccCcHhHHhhccCCCCCCCcCCC----CcEe--CCceEecCCCCCceeeeeeec-cC--
Confidence 5 89999999999998 44433332 236532 45443 3443 47899987766 888863 00
Q ss_pred cCCCCCCcCCCCCCCCCceecCCCCeeeeCCCccCCCCccCCCCccCCCCCCCC---CCCCCcEeeeeccCCCCCeeeCC
Q psy12394 349 YNYPRCTSCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPC---KCHMNGTLDFYCEPASGQQCPCK 425 (1873)
Q Consensus 349 ~g~~~C~~C~c~~c~n~g~C~~~~g~C~C~~G~tG~~Ce~C~~g~~~~~~C~~~---~C~n~gtc~~~cd~~~g~~C~C~ 425 (1873)
-.|..=.-..|...|.|. -|+|+|.+||+|..|+- + ...+.|.+. -|...|+|. | | .|.|.
T Consensus 547 ---fsC~r~~g~lC~g~G~C~--CG~CvC~~GwtG~~C~C-~---~std~C~~~~G~iCSGrG~C~--C----g-~C~C~ 610 (783)
T KOG1226|consen 547 ---FSCERHKGVLCGGHGRCE--CGRCVCNPGWTGSACNC-P---LSTDTCESSDGQICSGRGTCE--C----G-RCKCT 610 (783)
T ss_pred ---cccccccCcccCCCCeEe--CCcEEcCCCCccCCCCC-C---CCCccccCCCCceeCCCceee--C----C-ceEcC
Confidence 012211111233445543 47999999999999982 1 123444432 366667763 3 2 78998
Q ss_pred CC-cccCCCCcCCC
Q psy12394 426 EN-YAGDHCDTCAQ 438 (1873)
Q Consensus 426 ~g-~~G~~Ce~C~~ 438 (1873)
.. |.|..||.|+.
T Consensus 611 ~~~~sG~~CE~cpt 624 (783)
T KOG1226|consen 611 DPPYSGEFCEKCPT 624 (783)
T ss_pred CCCcCcchhhcCCC
Confidence 77 99999997653
No 27
>KOG1218|consensus
Probab=97.65 E-value=0.0032 Score=76.97 Aligned_cols=165 Identities=30% Similarity=0.731 Sum_probs=92.9
Q ss_pred CeeecCCCceecCCCCcCC-CCcccCCcccCCCCCCCCCCCCCCCCCceecCCCCCcccCCCCCccCCCcc-CCCCCCCC
Q psy12394 228 GNCAEGTGKCECRPEYTKP-DCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDT-CAQGYYNF 305 (1873)
Q Consensus 228 g~C~~~~g~C~C~~G~~G~-~Ce~C~~g~~g~~~C~~c~C~~~gt~~~~C~~~~G~~C~C~~g~~G~~Ce~-C~~Gf~g~ 305 (1873)
..+....+.|.|.++|+|. .++. .-........+++ ....+ .|.++.+|.|..|+. +..+..+
T Consensus 8 ~~~~~~~~~c~c~~~~~g~~~~~~---~~~~~~~~~~~~~----------~~~~~-~~~~~~~~~~~~c~~~~~~~~~~- 72 (316)
T KOG1218|consen 8 LKCLGGSGQCFCDPGYTGRLQCEH---QAVTSACSGICPC----------EVNSG-ECGLGYGFVGSVCRIECVCGNAG- 72 (316)
T ss_pred cccCCCCCceecCCCccccccccC---CCCCccccccCCc----------cCCce-eEecccccCCCccccccccCCCC-
Confidence 3455567899999999996 3322 1112222223333 22345 899999999999874 4433333
Q ss_pred CCCC-CCCcCCCCCCCCcccCCCcccccCCCcccCCCcc-CCCCCcCCCCCCcCCCCCCCCCceecCCCCeeeeCCCccC
Q psy12394 306 PTCS-PCECNAVGSLSDLCEVDSGNCTCRNNFAGRTCDS-CADGYYNYPRCTSCQCAFHYATGNCAEGTGKCECRPEYTK 383 (1873)
Q Consensus 306 ~~C~-~c~C~~~gs~~~~C~~~~g~C~C~~G~~G~~Ce~-C~~G~~g~~~C~~C~c~~c~n~g~C~~~~g~C~C~~G~tG 383 (1873)
..|. .+.|..+. .++..++.|. ..+|.|..|+. ++-+.. |.+ -+|......|.+..+|.+
T Consensus 73 ~~c~~~~~c~~~~----~~~~~~~~~~-~~~~~g~~C~~~~~~~~~------------c~~-~~C~~~~~~c~~~~~~~~ 134 (316)
T KOG1218|consen 73 GGCSQPCRCKNGG----TCVSSTGYCH-LNGYEGPQCESPCPCGDG------------CAE-KTCANPRRECRCGGGYIG 134 (316)
T ss_pred CcccCccccCCCC----cccCCCCccc-CCCCCcccccCCCCcCCc------------ccc-cccCCCccceecCCcCcc
Confidence 2332 23344432 3333445555 78888888874 221111 112 344433336788888888
Q ss_pred CCCccCCCCccCCCCCCCCCCCCCcEeeeeccCCCCCeeeCCCCcccCCCC
Q psy12394 384 PDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCD 434 (1873)
Q Consensus 384 ~~Ce~C~~g~~~~~~C~~~~C~n~gtc~~~cd~~~g~~C~C~~g~~G~~Ce 434 (1873)
..|.. .++++...-..+ .+... ++..++ .|.|++||.|.+|.
T Consensus 135 ~~C~~--~~~~g~~C~~~c--~~~~~----~~~~~~-~c~c~~g~~g~~~~ 176 (316)
T KOG1218|consen 135 EQCGE--ENLVGLKCQRDC--QCTGG----CDCKNG-ICTCQPGFVGVFCV 176 (316)
T ss_pred ccccc--cCCCCCCccCCC--CCccc----cCCCCC-ceeccCCccccccc
Confidence 88775 445544433333 22222 344445 89999999999986
No 28
>KOG1218|consensus
Probab=97.64 E-value=0.0034 Score=76.77 Aligned_cols=165 Identities=29% Similarity=0.764 Sum_probs=97.4
Q ss_pred eecCCCCCCCCCCccCCCCccCCCCCc-ccCCCCCCcCCccCCC-CCcccCCCCccCCCCCCCCCCcCCCCCCc-cCCCC
Q psy12394 573 SCLCKEGYTGARCDQCKAGYYGYPDCK-LCGCSAVGSSSTACDV-SGKCPCLVNFGGKTCSQCSPGFYQYPQCK-ACNCD 649 (1873)
Q Consensus 573 ~C~C~~G~~G~~Ce~C~~g~~~~~~C~-~c~C~~~Gt~~~~C~~-~g~C~C~~G~~G~~Ce~C~~g~~g~~~C~-~c~C~ 649 (1873)
.|.+..+|.+..|.. .++++. .|. .+ .+.+ .++. .+.|.|++||.|.+|+.-... |. .+.|.
T Consensus 125 ~c~~~~~~~~~~C~~--~~~~g~-~C~~~c--~~~~----~~~~~~~~c~c~~g~~g~~~~~~~~~------c~~~~~~~ 189 (316)
T KOG1218|consen 125 ECRCGGGYIGEQCGE--ENLVGL-KCQRDC--QCTG----GCDCKNGICTCQPGFVGVFCVESCSG------CSPLTACE 189 (316)
T ss_pred ceecCCcCccccccc--cCCCCC-CccCCC--CCcc----ccCCCCCceeccCCcccccccccCCC------cCCCcccC
Confidence 467777777777765 344442 222 22 1111 3443 489999999999999862211 21 34455
Q ss_pred CCCCCCcccCC-CcceecCCCCCCCCCcccCCCccCCCCcccCCCCCCCCCCcccCC---CCceeeCCCcccCCCCc-CC
Q psy12394 650 SHGNIGVSCDD-DGKCQCEKNFGGDRCERCKEGLYNFPICEACNCDSHGNIGVSCDD---DGKCQCEKNFGGDRCER-CK 724 (1873)
Q Consensus 650 ~~~~~gg~C~~-~g~C~C~~g~~G~~Ce~C~~g~~g~~~C~~C~C~~~g~~~~~C~~---~g~C~C~~g~~G~~Ce~-C~ 724 (1873)
+ ++.|+. .+.+.+.+.+.+ .|+.++.+...-..+.|.. +..+.. .+.|.+..+|.+..+.. ..
T Consensus 190 ~----g~~C~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~c~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (316)
T KOG1218|consen 190 N----GAKCNRSTGSCLCYPGPSG----ACKGGFHGCACLRMCDCNE----GYPCVNDCGPGICGCVLGEGETVCLRERP 257 (316)
T ss_pred C----CCeeeccccccccCCCCcc----cccCCccCCcCcccccccC----CCcccCCcCCceeEeCcccccccccccCc
Confidence 4 568888 888888888877 5566666655555566654 222322 67788888888777776 44
Q ss_pred CCCccCCCCcCCCCCCCCCccCccccccCCCCCceecCCCcccCCccc
Q psy12394 725 EGLYNFPICEECNCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDE 772 (1873)
Q Consensus 725 ~g~~g~p~C~~C~C~~~Gs~~~~~~C~~~~~~g~C~C~~g~~G~~C~~ 772 (1873)
.++.+...=..+.|..+-.+ .. ....|.+.+++++..+..
T Consensus 258 ~~~~~~~~~~~c~c~~g~~~------~~--~~~~~~~~~~~~~~~~~~ 297 (316)
T KOG1218|consen 258 KGSLGGSCFQRCQCGGGLVC------RP--GKGSCRCSPGAALATCQK 297 (316)
T ss_pred cceecCccccceeeCCCCcc------cc--ccccccCCCccccccccc
Confidence 44433322233444443332 22 236678888888877654
No 29
>KOG4260|consensus
Probab=97.58 E-value=6.6e-05 Score=84.15 Aligned_cols=55 Identities=45% Similarity=1.001 Sum_probs=44.8
Q ss_pred CCCCCCCCCCCCCCCCCccCCCCCCCCCCCCccCCCCCCCCCCeee-----cCCCceecCCCCcCCCCcccCCcccCC
Q psy12394 186 CRDNTEGINCHQRVAGYYRPYGKHLNETDVCQPCQCAFHYATGNCA-----EGTGKCECRPEYTKPDCNSCAFGYFGY 258 (1873)
Q Consensus 186 C~~~~~G~~Ce~C~~g~~~~~~~~~~~~~~C~~C~C~~~~n~g~C~-----~~~g~C~C~~G~~G~~Ce~C~~g~~g~ 258 (1873)
|++|+.|++|..|+-|--++ |. .+|.|. ..+|+|.|.+||+|+.|..|.++||..
T Consensus 132 Cp~gtyGpdCl~Cpggser~-------------C~-----GnG~C~GdGsR~GsGkCkC~~GY~Gp~C~~Cg~eyfes 191 (350)
T KOG4260|consen 132 CPDGTYGPDCLQCPGGSERP-------------CF-----GNGSCHGDGSREGSGKCKCETGYTGPLCRYCGIEYFES 191 (350)
T ss_pred cCCCCcCCccccCCCCCcCC-------------cC-----CCCcccCCCCCCCCCcccccCCCCCccccccchHHHHh
Confidence 89999999999988776543 11 456664 346899999999999999999999875
No 30
>KOG4260|consensus
Probab=97.18 E-value=0.0006 Score=76.74 Aligned_cols=154 Identities=25% Similarity=0.584 Sum_probs=91.0
Q ss_pred CCCCCCCCCCccCCCCccCCCCCcccCCCCCCcCCcc--CCCCCcccCCCCccCCCCCCCCCCcCCCC------CCccCC
Q psy12394 576 CKEGYTGARCDQCKAGYYGYPDCKLCGCSAVGSSSTA--CDVSGKCPCLVNFGGKTCSQCSPGFYQYP------QCKACN 647 (1873)
Q Consensus 576 C~~G~~G~~Ce~C~~g~~~~~~C~~c~C~~~Gt~~~~--C~~~g~C~C~~G~~G~~Ce~C~~g~~g~~------~C~~c~ 647 (1873)
||+|..|++|.+|+.|.-. +|.+.|++... =..+|.|.|.+||+|..|..|..+||... -|..|.
T Consensus 132 Cp~gtyGpdCl~Cpggser-------~C~GnG~C~GdGsR~GsGkCkC~~GY~Gp~C~~Cg~eyfes~Rne~~lvCt~Ch 204 (350)
T KOG4260|consen 132 CPDGTYGPDCLQCPGGSER-------PCFGNGSCHGDGSREGSGKCKCETGYTGPLCRYCGIEYFESSRNEQHLVCTACH 204 (350)
T ss_pred cCCCCcCCccccCCCCCcC-------CcCCCCcccCCCCCCCCCcccccCCCCCccccccchHHHHhhcccccchhhhhh
Confidence 8999999999999876544 57777743221 11348999999999999999999998532 133321
Q ss_pred CCCCCCCCcccCC--Ccce-ecCCCCCCCCCcccCCCccCCCCcc--cCCCCCCCCCCcccCC---CCceeeCCCcccC-
Q psy12394 648 CDSHGNIGVSCDD--DGKC-QCEKNFGGDRCERCKEGLYNFPICE--ACNCDSHGNIGVSCDD---DGKCQCEKNFGGD- 718 (1873)
Q Consensus 648 C~~~~~~gg~C~~--~g~C-~C~~g~~G~~Ce~C~~g~~g~~~C~--~C~C~~~g~~~~~C~~---~g~C~C~~g~~G~- 718 (1873)
. ...+.|.. +-.| .|+.||.-. |. +..+.+.|+ +-+|.. ..-|.+ +++|.+++||.+.
T Consensus 205 --~--~C~~~Csg~~~k~C~kCkkGW~ld--e~---gCvDvnEC~~ep~~c~~----~qfCvNteGSf~C~dk~Gy~~g~ 271 (350)
T KOG4260|consen 205 --E--GCLGVCSGESSKGCSKCKKGWKLD--EE---GCVDVNECQNEPAPCKA----HQFCVNTEGSFKCEDKEGYKKGV 271 (350)
T ss_pred --h--hhhcccCCCCCCChhhhcccceec--cc---ccccHHHHhcCCCCCCh----hheeecCCCceEecccccccCCh
Confidence 1 11234544 3345 477777543 21 111222332 223332 234544 6789889888873
Q ss_pred -CCCcCCCCCccCCCCcCCCCCCCCCccCccccccCCCCCceecCCCc
Q psy12394 719 -RCERCKEGLYNFPICEECNCNPEGVLKTFAGCGSLPAGELCECKPKV 765 (1873)
Q Consensus 719 -~Ce~C~~g~~g~p~C~~C~C~~~Gs~~~~~~C~~~~~~g~C~C~~g~ 765 (1873)
.|+.|+..+-+. +..|.+.++.+.|+|..+.
T Consensus 272 d~C~~~~d~~~~k----------------n~~c~ni~~~~r~v~f~~~ 303 (350)
T KOG4260|consen 272 DECQFCADVCASK----------------NRPCMNIDGQYRCVCFSGL 303 (350)
T ss_pred HHhhhhhhhcccC----------------CCCcccCCccEEEEecccc
Confidence 355555543221 2235566666778877553
No 31
>KOG1388|consensus
Probab=96.33 E-value=0.0048 Score=68.52 Aligned_cols=79 Identities=30% Similarity=0.915 Sum_probs=62.9
Q ss_pred CCCccccCCCCCCCCCCcccCCCcee-eccCCcccCCCcccCCCcccCC---CCCCccccCCCccccccCCCCceeecc-
Q psy12394 1287 IGCEECNCHPHGVNGTQQCDLFDGSC-SCKENIVGRTCDHCVEGHWSFP---YCVPCECDLRGTTIDICNQGTAECYCK- 1361 (1873)
Q Consensus 1287 ~~C~~C~C~~~gs~~~~~C~~~~G~C-~C~~~~~G~~C~~C~~G~~g~p---~C~~C~C~~~gs~~~~Cd~~~G~C~C~- 1361 (1873)
..|..|+|++++ .|.. .-.| .|+.+.+|..|++|++||||+- .|+||.|+.. ...|.+.+++|+|+
T Consensus 47 l~cP~~~cNGh~-----~c~t-~~v~~~~~N~~~g~~c~kc~~g~~GdtN~g~c~~~~~~g~---~~~~~~~~~~c~c~~ 117 (217)
T KOG1388|consen 47 LFCPLCQCNGHS-----DCNT-QHVCWRCENGTTGAHCEKCIVGFYGDTNGGKCQPCDCNGG---ASACVTLTGKCFCTT 117 (217)
T ss_pred hcChHHHhcCCC-----Cccc-ceeeeeccCccccccCCceEEEEEecCCCCccCHhhhcCC---eeeeeccCCcccccc
Confidence 468899999655 3332 1223 5899999999999999999953 4999999986 45788999999995
Q ss_pred CccccCCCCcCCC
Q psy12394 1362 KNVYGAACDVCKE 1374 (1873)
Q Consensus 1362 ~~~~G~~Cd~C~~ 1374 (1873)
.+|+|..|++|..
T Consensus 118 kgvvgd~c~~~e~ 130 (217)
T KOG1388|consen 118 KGVVGDLCPKCEV 130 (217)
T ss_pred ceEecccCccccc
Confidence 5999999998754
No 32
>KOG1214|consensus
Probab=96.29 E-value=0.06 Score=69.04 Aligned_cols=130 Identities=24% Similarity=0.562 Sum_probs=77.7
Q ss_pred CCCCCCCCCccCCCCCCCCCCCCccCCCCCCCCCCeeecCCC--ceecCCCC--cCC--CCcccCCcccCCCCCC--CCC
Q psy12394 194 NCHQRVAGYYRPYGKHLNETDVCQPCQCAFHYATGNCAEGTG--KCECRPEY--TKP--DCNSCAFGYFGYPNCE--PCK 265 (1873)
Q Consensus 194 ~Ce~C~~g~~~~~~~~~~~~~~C~~C~C~~~~n~g~C~~~~g--~C~C~~G~--~G~--~Ce~C~~g~~g~~~C~--~c~ 265 (1873)
.| .|..||-+.. +...++++|..+. +.++.+..|.+.++ +|.|..|| .++ +|-.=.+. .-.+.|. ...
T Consensus 717 tc-ecs~g~~gdg-r~c~d~~eca~~~-~~CGp~s~Cin~pg~~rceC~~gy~F~dd~~tCV~i~~p-ap~n~Ce~g~h~ 792 (1289)
T KOG1214|consen 717 TC-ECSSGYQGDG-RNCVDENECATGF-HRCGPNSVCINLPGSYRCECRSGYEFADDRHTCVLITPP-APANPCEDGSHT 792 (1289)
T ss_pred EE-EEeeccCCCC-CCCCChhhhccCC-CCCCCCceeecCCCceeEEEeecceeccCCcceEEecCC-CCCCccccCccc
Confidence 45 3666666653 3345777887655 12346788987655 88888775 443 45310000 0112232 234
Q ss_pred CCCCCCCCceecCCC--CCcccCCCCCccCC--CccCCCCCCCCCCCCCCCcCCCCCCCCcccCC--CcccccCCCcccC
Q psy12394 266 CHMNGTLDFYCEPAS--GQQCPCKENYAGDH--CDTCAQGYYNFPTCSPCECNAVGSLSDLCEVD--SGNCTCRNNFAGR 339 (1873)
Q Consensus 266 C~~~gt~~~~C~~~~--G~~C~C~~g~~G~~--Ce~C~~Gf~g~~~C~~c~C~~~gs~~~~C~~~--~g~C~C~~G~~G~ 339 (1873)
|..+|. ..|.... .|.|.|.+||.|+- |.. + ++|++..|.+ .+.|.+. +..|.|++||.|.
T Consensus 793 C~i~g~--a~c~~hGgs~y~C~CLPGfsGDG~~c~d------v-DeC~psrChp----~A~CyntpgsfsC~C~pGy~GD 859 (1289)
T KOG1214|consen 793 CAIAGQ--ARCVHHGGSTYSCACLPGFSGDGHQCTD------V-DECSPSRCHP----AATCYNTPGSFSCRCQPGYYGD 859 (1289)
T ss_pred cCcCCc--eEEEecCCceEEEeecCCccCCcccccc------c-cccCccccCC----CceEecCCCcceeecccCccCC
Confidence 554432 3454433 38999999999863 322 2 7899888988 4566554 4489999999874
Q ss_pred C
Q psy12394 340 T 340 (1873)
Q Consensus 340 ~ 340 (1873)
-
T Consensus 860 G 860 (1289)
T KOG1214|consen 860 G 860 (1289)
T ss_pred C
Confidence 3
No 33
>KOG1388|consensus
Probab=96.23 E-value=0.0026 Score=70.61 Aligned_cols=120 Identities=20% Similarity=0.481 Sum_probs=87.9
Q ss_pred CccCCCCCcCCCCCCCccccCCCceEEecCCccCCCCCcCCCCCcCCCCCCCCccccCCCCCCCCCCcccCCCceeecc-
Q psy12394 1237 GYYGFPDCHPCNCPFTAVCDSYTGECICAARVIGKKCDQCEPNTFGYDPIIGCEECNCHPHGVNGTQQCDLFDGSCSCK- 1315 (1873)
Q Consensus 1237 g~~~~~~C~~C~C~~~~~C~~~tg~C~C~~~~~G~~C~~C~~g~~g~~~~~~C~~C~C~~~gs~~~~~C~~~~G~C~C~- 1315 (1873)
--|.|-.|..|+|+.++.|.....-=.|..+++|..|++|..+|||......|+||+|+... .-|.+.+|+|.|+
T Consensus 42 ~~W~fl~cP~~~cNGh~~c~t~~v~~~~~N~~~g~~c~kc~~g~~GdtN~g~c~~~~~~g~~----~~~~~~~~~c~c~~ 117 (217)
T KOG1388|consen 42 EIWRFLFCPLCQCNGHSDCNTQHVCWRCENGTTGAHCEKCIVGFYGDTNGGKCQPCDCNGGA----SACVTLTGKCFCTT 117 (217)
T ss_pred chhhhhcChHHHhcCCCCcccceeeeeccCccccccCCceEEEEEecCCCCccCHhhhcCCe----eeeeccCCcccccc
Confidence 35677788889999777776443322388999999999999999995223459999999866 3788999999994
Q ss_pred CCcccCCCcccCCC--cccCCCCCCccccCCCccccccCCCCceee---ccCccccCCCCcCCCCcccc
Q psy12394 1316 ENIVGRTCDHCVEG--HWSFPYCVPCECDLRGTTIDICNQGTAECY---CKKNVYGAACDVCKEGTFDI 1379 (1873)
Q Consensus 1316 ~~~~G~~C~~C~~G--~~g~p~C~~C~C~~~gs~~~~Cd~~~G~C~---C~~~~~G~~Cd~C~~g~~g~ 1379 (1873)
.+++|+.|++|..- |.+ ++..|.|. +.++....++.++.++|+..
T Consensus 118 kgvvgd~c~~~e~~N~~r~-------------------~~~kgtcyy~l~id~~ftf~l~~~d~~fv~s 167 (217)
T KOG1388|consen 118 KGVVGDLCPKCEVPNRYRG-------------------KPLKGTCYYELLIDGQFTFHLLQEDDGFVTS 167 (217)
T ss_pred ceEecccCccccccccccc-------------------CccccceeeeeecccccccceeecCCCceee
Confidence 59999999997632 333 12334464 44566666777777887754
No 34
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=95.58 E-value=0.0053 Score=48.42 Aligned_cols=32 Identities=31% Similarity=0.742 Sum_probs=25.5
Q ss_pred CCCCCCCCCcEeeeeccCCCCCeeeCCCCcccCC
Q psy12394 399 CEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDH 432 (1873)
Q Consensus 399 C~~~~C~n~gtc~~~cd~~~g~~C~C~~g~~G~~ 432 (1873)
|.+.||+|+|+|... ...+|.|.|++||+|++
T Consensus 1 C~~~~C~n~g~C~~~--~~~~y~C~C~~G~~G~~ 32 (32)
T PF00008_consen 1 CSSNPCQNGGTCIDL--PGGGYTCECPPGYTGKR 32 (32)
T ss_dssp TTTTSSTTTEEEEEE--STSEEEEEEBTTEESTT
T ss_pred CCCCcCCCCeEEEeC--CCCCEEeECCCCCccCC
Confidence 556799999998632 13779999999999974
No 35
>KOG1214|consensus
Probab=95.46 E-value=0.27 Score=63.40 Aligned_cols=128 Identities=22% Similarity=0.583 Sum_probs=70.1
Q ss_pred CCceecCCCCcCC--CCcccCCcccCCCCCCCCCCCCCCCCCceecCC-CCCcccCCCCCccCCCccCCCCCCCCCCCCC
Q psy12394 234 TGKCECRPEYTKP--DCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPA-SGQQCPCKENYAGDHCDTCAQGYYNFPTCSP 310 (1873)
Q Consensus 234 ~g~C~C~~G~~G~--~Ce~C~~g~~g~~~C~~c~C~~~gt~~~~C~~~-~G~~C~C~~g~~G~~Ce~C~~Gf~g~~~C~~ 310 (1873)
++.|.|-|||.|+ .|.+ .++|.+..|+.+. .|... +.|.|.|++||.|+-= +|.|+-..+..|+.
T Consensus 808 ~y~C~CLPGfsGDG~~c~d-------vDeC~psrChp~A----~CyntpgsfsC~C~pGy~GDGf-~CVP~~~~~T~C~~ 875 (1289)
T KOG1214|consen 808 TYSCACLPGFSGDGHQCTD-------VDECSPSRCHPAA----TCYNTPGSFSCRCQPGYYGDGF-QCVPDTSSLTPCEQ 875 (1289)
T ss_pred eEEEeecCCccCCcccccc-------ccccCccccCCCc----eEecCCCcceeecccCccCCCc-eecCCCccCCcccc
Confidence 4599999999987 3433 3789999998654 47554 4589999999998742 24454223233542
Q ss_pred -----CCcCCCCCCCCcc-cCCCcccccCCCccc---CCCccCCCCCcCCCCCCcCCCCCCCCCceecCCCCeeeeCC
Q psy12394 311 -----CECNAVGSLSDLC-EVDSGNCTCRNNFAG---RTCDSCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCECRP 379 (1873)
Q Consensus 311 -----c~C~~~gs~~~~C-~~~~g~C~C~~G~~G---~~Ce~C~~G~~g~~~C~~C~c~~c~n~g~C~~~~g~C~C~~ 379 (1873)
-.|.....+ -.| ++..++|.|+++-.| .+|+.=+. ..|..|+-+.+..--.|+..++.|.|..
T Consensus 876 er~hpl~chg~t~~-~~~~Dp~~~e~p~~~~ppG~~~~~c~~~~~-----~~vp~Cd~hgh~ap~qchG~~~~CwCvd 947 (1289)
T KOG1214|consen 876 ERFHPLQCHGSTGF-CWCVDPDGHEVPGTQTPPGSTPPHCGPSPE-----QYVPQCDDHGHFAPLQCHGKSDFCWCVD 947 (1289)
T ss_pred ccccceeeccccce-eEeeCCCcccCCCCCCCCCCCCCCCCCccc-----ccCCCccccccccccccCCCcceeEEec
Confidence 123321000 012 334457888777666 34432111 1222233222222233445566777765
No 36
>smart00051 DSL delta serrate ligand.
Probab=94.03 E-value=0.061 Score=49.43 Aligned_cols=44 Identities=27% Similarity=0.659 Sum_probs=31.9
Q ss_pred ccCCCCccCCCCCC-CCCCcCCCCCCccCCCCCCCCCCcccCCCcceecCCCCCCCCC
Q psy12394 619 CPCLVNFGGKTCSQ-CSPGFYQYPQCKACNCDSHGNIGVSCDDDGKCQCEKNFGGDRC 675 (1873)
Q Consensus 619 C~C~~G~~G~~Ce~-C~~g~~g~~~C~~c~C~~~~~~gg~C~~~g~C~C~~g~~G~~C 675 (1873)
=.|.++|.|..|+. |.+. +....+.+|+.+|.|+|.+||+|.+|
T Consensus 19 v~C~~~~yG~~C~~~C~~~-------------~d~~~~~~Cd~~G~~~C~~Gw~G~~C 63 (63)
T smart00051 19 VTCDENYYGEGCNKFCRPR-------------DDFFGHYTCDENGNKGCLEGWMGPYC 63 (63)
T ss_pred eeCCCCCcCCccCCEeCcC-------------ccccCCccCCcCCCEecCCCCcCCCC
Confidence 36778888888875 4321 11112578988999999999999887
No 37
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=93.79 E-value=0.04 Score=43.50 Aligned_cols=29 Identities=31% Similarity=0.635 Sum_probs=23.8
Q ss_pred CCCCCCCCCceecCC---CCeeeeCCCccCCC
Q psy12394 357 CQCAFHYATGNCAEG---TGKCECRPEYTKPD 385 (1873)
Q Consensus 357 C~c~~c~n~g~C~~~---~g~C~C~~G~tG~~ 385 (1873)
|..+||+|+|+|.+. .+.|.|++||+|.+
T Consensus 1 C~~~~C~n~g~C~~~~~~~y~C~C~~G~~G~~ 32 (32)
T PF00008_consen 1 CSSNPCQNGGTCIDLPGGGYTCECPPGYTGKR 32 (32)
T ss_dssp TTTTSSTTTEEEEEESTSEEEEEEBTTEESTT
T ss_pred CCCCcCCCCeEEEeCCCCCEEeECCCCCccCC
Confidence 456799999999754 46999999999974
No 38
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=92.70 E-value=0.14 Score=41.75 Aligned_cols=36 Identities=25% Similarity=0.724 Sum_probs=28.5
Q ss_pred CCCCCC-CCCCCCcEeeeeccCCCCCeeeCCCCcc-cCCCC
Q psy12394 396 YPNCEP-CKCHMNGTLDFYCEPASGQQCPCKENYA-GDHCD 434 (1873)
Q Consensus 396 ~~~C~~-~~C~n~gtc~~~cd~~~g~~C~C~~g~~-G~~Ce 434 (1873)
+++|.. .+|.++++|. +...+|.|.|++||+ |..|+
T Consensus 2 ~~~C~~~~~C~~~~~C~---~~~g~~~C~C~~g~~~g~~C~ 39 (39)
T smart00179 2 IDECASGNPCQNGGTCV---NTVGSYRCECPPGYTDGRNCE 39 (39)
T ss_pred cccCcCCCCcCCCCEeE---CCCCCeEeECCCCCccCCcCC
Confidence 456666 6899999874 455678999999999 98884
No 39
>smart00051 DSL delta serrate ligand.
Probab=92.58 E-value=0.13 Score=47.31 Aligned_cols=45 Identities=24% Similarity=0.723 Sum_probs=32.3
Q ss_pred ceecCCCCCCCCCcc-cCCCccCCCCcccCCCCCCCCCCcccCCCCceeeCCCcccCCC
Q psy12394 663 KCQCEKNFGGDRCER-CKEGLYNFPICEACNCDSHGNIGVSCDDDGKCQCEKNFGGDRC 720 (1873)
Q Consensus 663 ~C~C~~g~~G~~Ce~-C~~g~~g~~~C~~C~C~~~g~~~~~C~~~g~C~C~~g~~G~~C 720 (1873)
+-.|.++|.|..|+. |.+ .+.-..+..|+..|.|.|.+||+|.+|
T Consensus 18 rv~C~~~~yG~~C~~~C~~-------------~~d~~~~~~Cd~~G~~~C~~Gw~G~~C 63 (63)
T smart00051 18 RVTCDENYYGEGCNKFCRP-------------RDDFFGHYTCDENGNKGCLEGWMGPYC 63 (63)
T ss_pred EeeCCCCCcCCccCCEeCc-------------CccccCCccCCcCCCEecCCCCcCCCC
Confidence 346888888888875 332 111112567888999999999999987
No 40
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=92.56 E-value=0.11 Score=40.94 Aligned_cols=23 Identities=43% Similarity=1.154 Sum_probs=21.7
Q ss_pred CCCeeecCCCceecCCCCcCCCC
Q psy12394 226 ATGNCAEGTGKCECRPEYTKPDC 248 (1873)
Q Consensus 226 n~g~C~~~~g~C~C~~G~~G~~C 248 (1873)
+.|+|+...++|+|.+||+|+.|
T Consensus 10 ~~G~C~~~~g~C~C~~g~~G~~C 32 (32)
T PF07974_consen 10 GHGTCVSPCGRCVCDSGYTGPDC 32 (32)
T ss_pred CCCEEeCCCCEEECCCCCcCCCC
Confidence 89999988999999999999987
No 41
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=92.40 E-value=0.13 Score=40.69 Aligned_cols=26 Identities=38% Similarity=0.993 Sum_probs=23.5
Q ss_pred CCCCCceecCCCCeeeeCCCccCCCC
Q psy12394 361 FHYATGNCAEGTGKCECRPEYTKPDC 386 (1873)
Q Consensus 361 ~c~n~g~C~~~~g~C~C~~G~tG~~C 386 (1873)
.|.+.|+|...+++|+|.+||+|+.|
T Consensus 7 ~C~~~G~C~~~~g~C~C~~g~~G~~C 32 (32)
T PF07974_consen 7 ICSGHGTCVSPCGRCVCDSGYTGPDC 32 (32)
T ss_pred ccCCCCEEeCCCCEEECCCCCcCCCC
Confidence 46789999988999999999999987
No 42
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=92.01 E-value=0.068 Score=33.38 Aligned_cols=13 Identities=46% Similarity=1.472 Sum_probs=10.9
Q ss_pred ceecCCCCcCCCC
Q psy12394 236 KCECRPEYTKPDC 248 (1873)
Q Consensus 236 ~C~C~~G~~G~~C 248 (1873)
+|+|++||+|++|
T Consensus 1 ~C~C~~G~~G~~C 13 (13)
T PF12661_consen 1 TCQCPPGWTGPNC 13 (13)
T ss_dssp EEEE-TTEETTTT
T ss_pred CccCcCCCcCCCC
Confidence 5999999999987
No 43
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=91.04 E-value=0.12 Score=32.36 Aligned_cols=13 Identities=46% Similarity=1.472 Sum_probs=10.8
Q ss_pred eeeeCCCccCCCC
Q psy12394 374 KCECRPEYTKPDC 386 (1873)
Q Consensus 374 ~C~C~~G~tG~~C 386 (1873)
+|.|++||+|.+|
T Consensus 1 ~C~C~~G~~G~~C 13 (13)
T PF12661_consen 1 TCQCPPGWTGPNC 13 (13)
T ss_dssp EEEE-TTEETTTT
T ss_pred CccCcCCCcCCCC
Confidence 5899999999987
No 44
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=90.99 E-value=0.29 Score=39.30 Aligned_cols=36 Identities=25% Similarity=0.732 Sum_probs=27.6
Q ss_pred CCCCCC-CCCCCCcEeeeeccCCCCCeeeCCCCcccCCCC
Q psy12394 396 YPNCEP-CKCHMNGTLDFYCEPASGQQCPCKENYAGDHCD 434 (1873)
Q Consensus 396 ~~~C~~-~~C~n~gtc~~~cd~~~g~~C~C~~g~~G~~Ce 434 (1873)
++.|.. .+|.++++|. +...+|.|.|++||.|..|+
T Consensus 2 ~~~C~~~~~C~~~~~C~---~~~~~~~C~C~~g~~g~~C~ 38 (38)
T cd00054 2 IDECASGNPCQNGGTCV---NTVGSYRCSCPPGYTGRNCE 38 (38)
T ss_pred cccCCCCCCcCCCCEeE---CCCCCeEeECCCCCcCCcCC
Confidence 345665 6888888874 45567899999999998874
No 45
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=89.99 E-value=18 Score=45.94 Aligned_cols=49 Identities=24% Similarity=0.560 Sum_probs=30.5
Q ss_pred ccccccCCCCcCCCCCCCCCCccCCCCCCCCcCCcccccCCCCcccccCCCCcCCccccCCCccccC
Q psy12394 1500 RICDECRPLYWNLKASNPDGCEDCDCYTLGTIGGIKNCNPKSGQCVCKATAMNRKCDACVDGTYALQ 1566 (1873)
Q Consensus 1500 ~~Cd~C~~~y~~~~~~~~~~C~~C~C~~~~s~~g~~~c~~~tgqC~C~~g~~g~~Cd~C~~g~~~~~ 1566 (1873)
-.|.+|..+||-.. ++|..- ..+.|+..|... -.+..|..|.+||+..+
T Consensus 205 G~Ct~C~~~yFl~~----GGCY~~-----~~~PG~~vC~~~---------~~~~~C~~~~~GY~~~~ 253 (397)
T PF03302_consen 205 GTCTSCTDGYFLYK----GGCYST-----SKAPGNSVCKDA---------SDGGTCTACAPGYFLNP 253 (397)
T ss_pred Ccccccccchhhhc----Cccccc-----ccCCCcchhccc---------ccccccccccccccccC
Confidence 35889999999874 343332 333444445444 33447999999998543
No 46
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=89.19 E-value=0.49 Score=38.52 Aligned_cols=34 Identities=38% Similarity=1.028 Sum_probs=24.7
Q ss_pred CCCCcc-CCCCCCCCCCeeecCCC--ceecCCCCc-CCCCc
Q psy12394 213 TDVCQP-CQCAFHYATGNCAEGTG--KCECRPEYT-KPDCN 249 (1873)
Q Consensus 213 ~~~C~~-C~C~~~~n~g~C~~~~g--~C~C~~G~~-G~~Ce 249 (1873)
+++|.. -+|. ++++|.+..+ +|.|++||+ |..|+
T Consensus 2 ~~~C~~~~~C~---~~~~C~~~~g~~~C~C~~g~~~g~~C~ 39 (39)
T smart00179 2 IDECASGNPCQ---NGGTCVNTVGSYRCECPPGYTDGRNCE 39 (39)
T ss_pred cccCcCCCCcC---CCCEeECCCCCeEeECCCCCccCCcCC
Confidence 345554 3344 7789987654 899999999 98885
No 47
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=86.10 E-value=0.94 Score=36.29 Aligned_cols=24 Identities=38% Similarity=1.088 Sum_probs=20.0
Q ss_pred CCCeeecCCC--ceecCCCCcCCCCc
Q psy12394 226 ATGNCAEGTG--KCECRPEYTKPDCN 249 (1873)
Q Consensus 226 n~g~C~~~~g--~C~C~~G~~G~~Ce 249 (1873)
+++.|.+..+ .|.|++||.|..|+
T Consensus 13 ~~~~C~~~~~~~~C~C~~g~~g~~C~ 38 (38)
T cd00054 13 NGGTCVNTVGSYRCSCPPGYTGRNCE 38 (38)
T ss_pred CCCEeECCCCCeEeECCCCCcCCcCC
Confidence 7788987654 89999999998875
No 48
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=85.88 E-value=0.98 Score=35.60 Aligned_cols=31 Identities=29% Similarity=0.734 Sum_probs=24.2
Q ss_pred CCCCCCCcEeeeeccCCCCCeeeCCCCcccC-CCC
Q psy12394 401 PCKCHMNGTLDFYCEPASGQQCPCKENYAGD-HCD 434 (1873)
Q Consensus 401 ~~~C~n~gtc~~~cd~~~g~~C~C~~g~~G~-~Ce 434 (1873)
..+|.+++.|. +...+|.|.|+.||.|. .|+
T Consensus 5 ~~~C~~~~~C~---~~~~~~~C~C~~g~~g~~~C~ 36 (36)
T cd00053 5 SNPCSNGGTCV---NTPGSYRCVCPPGYTGDRSCE 36 (36)
T ss_pred CCCCCCCCEEe---cCCCCeEeECCCCCcccCCcC
Confidence 56788888874 34467899999999998 663
No 49
>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates. In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.
Probab=83.97 E-value=0.35 Score=44.57 Aligned_cols=46 Identities=28% Similarity=0.595 Sum_probs=23.7
Q ss_pred CcccCCCCccCCCCCC-CCCCcCCCCCCccCCCCCCCCCCcccCCCcceecCCCCCCCCC
Q psy12394 617 GKCPCLVNFGGKTCSQ-CSPGFYQYPQCKACNCDSHGNIGVSCDDDGKCQCEKNFGGDRC 675 (1873)
Q Consensus 617 g~C~C~~G~~G~~Ce~-C~~g~~g~~~C~~c~C~~~~~~gg~C~~~g~C~C~~g~~G~~C 675 (1873)
.+-.|..+|.|..|+. |.+.-- ....-+|+.+|.=+|.+||+|++|
T Consensus 17 ~rv~C~~nyyG~~C~~~C~~~~d-------------~~ghy~Cd~~G~~~C~~Gw~G~~C 63 (63)
T PF01414_consen 17 IRVVCDENYYGPNCSKFCKPRDD-------------SFGHYTCDSNGNKVCLPGWTGPNC 63 (63)
T ss_dssp ------TTEETTTT-EE---EEE-------------TTEEEEE-SS--EEE-TTEESTTS
T ss_pred EEEECCCCCCCccccCCcCCCcC-------------CcCCcccCCCCCCCCCCCCcCCCC
Confidence 5668899999999986 654300 001357888899999999999987
No 50
>smart00181 EGF Epidermal growth factor-like domain.
Probab=80.73 E-value=2 Score=34.22 Aligned_cols=29 Identities=24% Similarity=0.661 Sum_probs=22.2
Q ss_pred CCCCCCcEeeeeccCCCCCeeeCCCCccc-CCCC
Q psy12394 402 CKCHMNGTLDFYCEPASGQQCPCKENYAG-DHCD 434 (1873)
Q Consensus 402 ~~C~n~gtc~~~cd~~~g~~C~C~~g~~G-~~Ce 434 (1873)
.+|.++ +|. +..++|.|.|++||.| ..|+
T Consensus 6 ~~C~~~-~C~---~~~~~~~C~C~~g~~g~~~C~ 35 (35)
T smart00181 6 GPCSNG-TCI---NTPGSYTCSCPPGYTGDKRCE 35 (35)
T ss_pred CCCCCC-EEE---CCCCCeEeECCCCCccCCccC
Confidence 478887 764 3456789999999999 7663
No 51
>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates. In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.
Probab=75.78 E-value=0.94 Score=41.78 Aligned_cols=47 Identities=23% Similarity=0.512 Sum_probs=23.0
Q ss_pred CCceecCCCcccCCccc-cCCCCcCCCCCCCCCCCcCcCCCCCcccCCcccCCCCCceecCCCCccCCC
Q psy12394 756 GELCECKPKVQGRICDE-CRPLYWNLKASNPDGCEDCDCYTLGTIGGIKNCNPKSGQCVCKATAMNRKC 823 (1873)
Q Consensus 756 ~g~C~C~~g~~G~~C~~-C~~g~~g~~~~~~~~C~~c~C~~~Gt~~~~~~C~~~tg~C~C~~g~~G~~C 823 (1873)
...-.|.++|.|..|+. |.+ .-...+.-+|+ .+|+=.|.+||+|..|
T Consensus 16 ~~rv~C~~nyyG~~C~~~C~~--------------------~~d~~ghy~Cd-~~G~~~C~~Gw~G~~C 63 (63)
T PF01414_consen 16 RIRVVCDENYYGPNCSKFCKP--------------------RDDSFGHYTCD-SNGNKVCLPGWTGPNC 63 (63)
T ss_dssp -------TTEETTTT-EE-----------------------EEETTEEEEE--SS--EEE-TTEESTTS
T ss_pred EEEEECCCCCCCccccCCcCC--------------------CcCCcCCcccC-CCCCCCCCCCCcCCCC
Confidence 35678889999998876 443 21112245688 4899999999999887
No 52
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=74.61 E-value=3.9 Score=32.07 Aligned_cols=24 Identities=33% Similarity=0.912 Sum_probs=19.4
Q ss_pred CCCeeecC--CCceecCCCCcCC-CCc
Q psy12394 226 ATGNCAEG--TGKCECRPEYTKP-DCN 249 (1873)
Q Consensus 226 n~g~C~~~--~g~C~C~~G~~G~-~Ce 249 (1873)
+++.|.+. .++|.|+.||.|. .|+
T Consensus 10 ~~~~C~~~~~~~~C~C~~g~~g~~~C~ 36 (36)
T cd00053 10 NGGTCVNTPGSYRCVCPPGYTGDRSCE 36 (36)
T ss_pred CCCEEecCCCCeEeECCCCCcccCCcC
Confidence 67889875 4599999999998 663
No 53
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=74.16 E-value=1.1 Score=36.55 Aligned_cols=27 Identities=30% Similarity=0.562 Sum_probs=19.5
Q ss_pred CCccCccccccCCCCCceecCCCcccC
Q psy12394 742 GVLKTFAGCGSLPAGELCECKPKVQGR 768 (1873)
Q Consensus 742 Gs~~~~~~C~~~~~~g~C~C~~g~~G~ 768 (1873)
+.|+.++.|....+.+.|.|++||+|+
T Consensus 6 ~~C~~nA~C~~~~~~~~C~C~~Gy~Gd 32 (36)
T PF12947_consen 6 GGCHPNATCTNTGGSYTCTCKPGYEGD 32 (36)
T ss_dssp GGS-TTCEEEE-TTSEEEEE-CEEECC
T ss_pred CCCCCCcEeecCCCCEEeECCCCCccC
Confidence 445556678888788999999999997
No 54
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=73.84 E-value=52 Score=41.93 Aligned_cols=14 Identities=36% Similarity=0.968 Sum_probs=10.5
Q ss_pred CccEEcCCCCCcCC
Q psy12394 1446 DSCQYCAPGYYGNA 1459 (1873)
Q Consensus 1446 ~~c~~c~pg~yG~~ 1459 (1873)
..|..|.++||..+
T Consensus 37 ~~Ct~C~~~~~lt~ 50 (397)
T PF03302_consen 37 EVCTECNSGYYLTP 50 (397)
T ss_pred CccCcCCCCCcCCC
Confidence 56788888888654
No 55
>PTZ00214 high cysteine membrane protein Group 4; Provisional
Probab=72.70 E-value=70 Score=44.26 Aligned_cols=120 Identities=25% Similarity=0.656 Sum_probs=55.7
Q ss_pred CCCcccCCcccCCCC--CCCCCCCCCCCCCceecCC-CCCccc-CCCCCcc--------CCC---ccCCCCCCCCC-CCC
Q psy12394 246 PDCNSCAFGYFGYPN--CEPCKCHMNGTLDFYCEPA-SGQQCP-CKENYAG--------DHC---DTCAQGYYNFP-TCS 309 (1873)
Q Consensus 246 ~~Ce~C~~g~~g~~~--C~~c~C~~~gt~~~~C~~~-~G~~C~-C~~g~~G--------~~C---e~C~~Gf~g~~-~C~ 309 (1873)
..|..|..|||-.+. |.+| ..+. ..|... .. +|. |+.+|.= ..| ..|.+|||... .|.
T Consensus 559 g~Ct~C~~GYyl~~~~~C~~C--d~~C---~~C~~~~~~-~C~sC~~g~yL~~~~~~~~g~Cv~~~~C~~GYY~d~~~C~ 632 (800)
T PTZ00214 559 GKCTTTKKGYGISPDGKLLEC--DPTC---LACTAPGPG-RCTRCPSDKLLKRASGAATGSCVDPGACVDGYYADGDACL 632 (800)
T ss_pred CcccccccCcccCCCCccccc--cchh---hhccCCCCC-cceECCCCCEeccccccccccccCcccCCCCcccCCCccc
Confidence 467788888875432 4433 2111 134332 23 563 6666631 124 36888887632 255
Q ss_pred CCCcCCCCCCCCcccCCCcccccCCCcccCCCccCCCCCcCCCCCCcCC--CCCCCCCceecCCCCeeeeCCCcc----C
Q psy12394 310 PCECNAVGSLSDLCEVDSGNCTCRNNFAGRTCDSCADGYYNYPRCTSCQ--CAFHYATGNCAEGTGKCECRPEYT----K 383 (1873)
Q Consensus 310 ~c~C~~~gs~~~~C~~~~g~C~C~~G~~G~~Ce~C~~G~~g~~~C~~C~--c~~c~n~g~C~~~~g~C~C~~G~t----G 383 (1873)
+|.= . .|. . |. ....|..|..+||-..+-..|. |.....-+.-.....+|+|..||. +
T Consensus 633 ~C~~-~------~C~----t--C~---~~~~C~~C~~~~~ls~~~~~C~~~C~~~~~~~~~~~~~~~C~C~~g~~p~~~~ 696 (800)
T PTZ00214 633 PCAT-P------GCK----T--CG---HASFCTECAGELFVSLDGQSCLEECTGDKVVGEVSGGVRRCWCERGFLPALDR 696 (800)
T ss_pred cCCc-c------ccc----c--cc---CCCCcCcCCCCceecCcCCchhhcCCCccccccccCCcceeEecCCcccccCC
Confidence 4420 0 010 1 11 2235777777776422212121 111000011111234799999986 5
Q ss_pred CCCc
Q psy12394 384 PDCN 387 (1873)
Q Consensus 384 ~~Ce 387 (1873)
..|.
T Consensus 697 ~~C~ 700 (800)
T PTZ00214 697 SGCV 700 (800)
T ss_pred Cccc
Confidence 6676
No 56
>KOG0196|consensus
Probab=71.83 E-value=4.3 Score=53.67 Aligned_cols=20 Identities=35% Similarity=0.949 Sum_probs=16.9
Q ss_pred CCcCCCCCCCC----CCCCccccc
Q psy12394 1717 GQQCPCKENYA----GDHCDTCAQ 1736 (1873)
Q Consensus 1717 ~~~C~C~~gy~----G~sCe~Ca~ 1736 (1873)
++.|.|++||. |..|+.|.+
T Consensus 258 iG~C~C~aGye~~~~~~~C~aCp~ 281 (996)
T KOG0196|consen 258 IGGCVCKAGYEEAENGKACQACPP 281 (996)
T ss_pred cCceeecCCCCcccCCCcceeCCC
Confidence 68999999994 688998877
No 57
>smart00281 LamB Laminin B domain.
Probab=66.30 E-value=2.2 Score=45.23 Aligned_cols=93 Identities=14% Similarity=0.089 Sum_probs=58.2
Q ss_pred CCCCcCCCCCCCCCCccCCCCCCCCcCCcccccCCCCcccccCCCCcCCccccCCCccccCCCCcCCccccccCCCcccc
Q psy12394 1506 RPLYWNLKASNPDGCEDCDCYTLGTIGGIKNCNPKSGQCVCKATAMNRKCDACVDGTYALQDNNLFGCTECACDIGGSIN 1585 (1873)
Q Consensus 1506 ~~~y~~~~~~~~~~C~~C~C~~~~s~~g~~~c~~~tgqC~C~~g~~g~~Cd~C~~g~~~~~~~~~~gc~~c~C~~~~s~~ 1585 (1873)
.+-||..|....+ |...||+|.++.+.. +.+. +. ......|||++.|...- +.+....
T Consensus 3 ~~~Yw~aP~~flG-------n~~~SYGg~L~ytl~---------~~~~--~~--g~~~~~pdViL~G~~~~--l~~~~~~ 60 (127)
T smart00281 3 EPVYWVAPEQFLG-------DKVTSYGGKLRYTLS---------FDGR--RG--GTHVSAPDVILEGNGLR--ISHPAEG 60 (127)
T ss_pred cccEEECChHHcC-------cceeccCCEEEEEEE---------EEcc--CC--CccCCCCCEEEECCCeE--EEEeecC
Confidence 3578999875443 358999999988877 3332 00 11225689999997654 3333222
Q ss_pred ccccccccccccEEEee--e--------------eecccccccccccceeec
Q psy12394 1586 NLCNKSLIWMSSFRMVS--F--------------TKLSSQSNIVLPGLVVEQ 1621 (1873)
Q Consensus 1586 ~~c~~~~~~~~~v~l~e--~--------------~~l~~~~~~~~~~~~~~~ 1621 (1873)
++ .+...++.++.|+| | +-|++|+.|+||+.|+..
T Consensus 61 ~~-~p~~~~~~~v~~~e~~~~~~~g~p~tr~~fm~vLanl~~i~IRaty~~~ 111 (127)
T smart00281 61 PP-LPDELTTVEVRFREENWQYFGGRPVTREDLMMVLANLTAILIRATYSQQ 111 (127)
T ss_pred CC-CCCcceEEEEEEEecccCcCCCCCcCHHHHHHHHhCccEEEEEEEeecC
Confidence 22 22233445666666 2 128999999999999875
No 58
>smart00181 EGF Epidermal growth factor-like domain.
Probab=65.82 E-value=7.7 Score=30.79 Aligned_cols=23 Identities=30% Similarity=0.826 Sum_probs=17.9
Q ss_pred CCCeeecC--CCceecCCCCcC-CCCc
Q psy12394 226 ATGNCAEG--TGKCECRPEYTK-PDCN 249 (1873)
Q Consensus 226 n~g~C~~~--~g~C~C~~G~~G-~~Ce 249 (1873)
++ .|.+. .++|.|++||.| ..|+
T Consensus 10 ~~-~C~~~~~~~~C~C~~g~~g~~~C~ 35 (35)
T smart00181 10 NG-TCINTPGSYTCSCPPGYTGDKRCE 35 (35)
T ss_pred CC-EEECCCCCeEeECCCCCccCCccC
Confidence 55 78765 449999999999 7664
No 59
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=65.22 E-value=4.1 Score=34.30 Aligned_cols=31 Identities=29% Similarity=0.698 Sum_probs=21.3
Q ss_pred CCCCccCCCCCCCCCCeeecCCC--ceecCCCCc
Q psy12394 213 TDVCQPCQCAFHYATGNCAEGTG--KCECRPEYT 244 (1873)
Q Consensus 213 ~~~C~~C~C~~~~n~g~C~~~~g--~C~C~~G~~ 244 (1873)
+|+|..-. +.+..++.|.+..| +|.|++||.
T Consensus 2 idEC~~~~-~~C~~~~~C~N~~Gsy~C~C~~Gy~ 34 (42)
T PF07645_consen 2 IDECAEGP-HNCPENGTCVNTEGSYSCSCPPGYE 34 (42)
T ss_dssp SSTTTTTS-SSSSTTSEEEEETTEEEEEESTTEE
T ss_pred ccccCCCC-CcCCCCCEEEcCCCCEEeeCCCCcE
Confidence 56665322 11227899988765 999999998
No 60
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=64.11 E-value=3.3 Score=34.85 Aligned_cols=31 Identities=26% Similarity=0.621 Sum_probs=23.7
Q ss_pred CCCCCC--CCCCCCcEeeeeccCCCCCeeeCCCCcc
Q psy12394 396 YPNCEP--CKCHMNGTLDFYCEPASGQQCPCKENYA 429 (1873)
Q Consensus 396 ~~~C~~--~~C~n~gtc~~~cd~~~g~~C~C~~g~~ 429 (1873)
+++|.. ..|..+++|. +...+|.|.|++||.
T Consensus 2 idEC~~~~~~C~~~~~C~---N~~Gsy~C~C~~Gy~ 34 (42)
T PF07645_consen 2 IDECAEGPHNCPENGTCV---NTEGSYSCSCPPGYE 34 (42)
T ss_dssp SSTTTTTSSSSSTTSEEE---EETTEEEEEESTTEE
T ss_pred ccccCCCCCcCCCCCEEE---cCCCCEEeeCCCCcE
Confidence 455654 3588888884 567789999999998
No 61
>KOG0196|consensus
Probab=62.95 E-value=9.2 Score=50.79 Aligned_cols=42 Identities=31% Similarity=0.661 Sum_probs=34.7
Q ss_pred CCceEEecCCcc----CCCCCcCCCCCcCCCC-CCCCccccCCCCCC
Q psy12394 1258 YTGECICAARVI----GKKCDQCEPNTFGYDP-IIGCEECNCHPHGV 1299 (1873)
Q Consensus 1258 ~tg~C~C~~~~~----G~~C~~C~~g~~g~~~-~~~C~~C~C~~~gs 1299 (1873)
-.|.|.|++||+ |..|+.|.+|+|.... ...|.+|+=|.+.+
T Consensus 257 piG~C~C~aGye~~~~~~~C~aCp~G~yK~~~~~~~C~~CP~~S~s~ 303 (996)
T KOG0196|consen 257 PIGGCVCKAGYEEAENGKACQACPPGTYKASQGDSLCLPCPPNSHSS 303 (996)
T ss_pred EcCceeecCCCCcccCCCcceeCCCCcccCCCCCCCCCCCCCCCCCC
Confidence 378999999984 6889999999999765 56799999887763
No 62
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=47.24 E-value=10 Score=31.06 Aligned_cols=27 Identities=37% Similarity=0.787 Sum_probs=18.6
Q ss_pred CCCCCcEeeeeccCCCCCeeeCCCCcccCC
Q psy12394 403 KCHMNGTLDFYCEPASGQQCPCKENYAGDH 432 (1873)
Q Consensus 403 ~C~n~gtc~~~cd~~~g~~C~C~~g~~G~~ 432 (1873)
.|+.+++|. +....|.|.|++||.|+-
T Consensus 7 ~C~~nA~C~---~~~~~~~C~C~~Gy~GdG 33 (36)
T PF12947_consen 7 GCHPNATCT---NTGGSYTCTCKPGYEGDG 33 (36)
T ss_dssp GS-TTCEEE---E-TTSEEEEE-CEEECCS
T ss_pred CCCCCcEee---cCCCCEEeECCCCCccCC
Confidence 577888875 334478999999999963
No 63
>PHA02887 EGF-like protein; Provisional
Probab=45.22 E-value=17 Score=37.14 Aligned_cols=31 Identities=29% Similarity=0.567 Sum_probs=23.3
Q ss_pred CCCCCcEeeeeccCCCCCeeeCCCCcccCCCCc
Q psy12394 403 KCHMNGTLDFYCEPASGQQCPCKENYAGDHCDT 435 (1873)
Q Consensus 403 ~C~n~gtc~~~cd~~~g~~C~C~~g~~G~~Ce~ 435 (1873)
-|. +|+|.+. .......|.|..||+|.+|+.
T Consensus 93 YCi-HG~C~yI-~dL~epsCrC~~GYtG~RCE~ 123 (126)
T PHA02887 93 FCI-NGECMNI-IDLDEKFCICNKGYTGIRCDE 123 (126)
T ss_pred Eee-CCEEEcc-ccCCCceeECCCCcccCCCCc
Confidence 466 4688753 334556999999999999984
No 64
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=43.36 E-value=18 Score=37.59 Aligned_cols=31 Identities=23% Similarity=0.530 Sum_probs=23.7
Q ss_pred CCCCCcEeeeeccCCCCCeeeCCCCcccCCCCc
Q psy12394 403 KCHMNGTLDFYCEPASGQQCPCKENYAGDHCDT 435 (1873)
Q Consensus 403 ~C~n~gtc~~~cd~~~g~~C~C~~g~~G~~Ce~ 435 (1873)
-|.|| +|.+. ...+.+.|.|..||+|.+||.
T Consensus 52 YClHG-~C~yI-~dl~~~~CrC~~GYtGeRCEh 82 (139)
T PHA03099 52 YCLHG-DCIHA-RDIDGMYCRCSHGYTGIRCQH 82 (139)
T ss_pred EeECC-EEEee-ccCCCceeECCCCcccccccc
Confidence 46675 78653 345567999999999999984
No 65
>cd00185 TNFR Tumor necrosis factor receptor (TNFR) domain; superfamily of TNF-like receptor domains. When bound to TNF-like cytokines, TNFRs trigger multiple signal transduction pathways, they are involved in inflammation response, apoptosis, autoimmunity and organogenesis. TNFRs domains are elongated with generally three tandem repeats of cysteine-rich domains (CRDs). They fit in the grooves between protomers within the ligand trimer. Some TNFRs, such as NGFR and HveA, bind ligands with no structural similarity to TNF and do not bind ligand trimers.
Probab=41.34 E-value=73 Score=32.11 Aligned_cols=18 Identities=22% Similarity=0.617 Sum_probs=12.0
Q ss_pred eccCCCCCeeeCCCCccc
Q psy12394 413 YCEPASGQQCPCKENYAG 430 (1873)
Q Consensus 413 ~cd~~~g~~C~C~~g~~G 430 (1873)
.|.....-.|.|++||.=
T Consensus 68 ~ct~t~dt~C~C~~G~y~ 85 (98)
T cd00185 68 PCTATRNTVCGCKPGFYC 85 (98)
T ss_pred cCCCCCCCeEeCCCCCEe
Confidence 355555558888888753
No 66
>PHA02887 EGF-like protein; Provisional
Probab=38.20 E-value=27 Score=35.85 Aligned_cols=19 Identities=21% Similarity=0.630 Sum_probs=16.4
Q ss_pred CccceeecCCCCCCCCCCC
Q psy12394 107 PYHRICRCQHNTCGHNCEV 125 (1873)
Q Consensus 107 ~~~~~C~C~h~t~G~~Ce~ 125 (1873)
.....|.|+.||+|++||.
T Consensus 105 L~epsCrC~~GYtG~RCE~ 123 (126)
T PHA02887 105 LDEKFCICNKGYTGIRCDE 123 (126)
T ss_pred CCCceeECCCCcccCCCCc
Confidence 3457899999999999995
No 67
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=33.92 E-value=27 Score=36.38 Aligned_cols=27 Identities=22% Similarity=0.557 Sum_probs=20.9
Q ss_pred CCCCCceec----CCCCeeeeCCCccCCCCcc
Q psy12394 361 FHYATGNCA----EGTGKCECRPEYTKPDCNS 388 (1873)
Q Consensus 361 ~c~n~g~C~----~~~g~C~C~~G~tG~~Ce~ 388 (1873)
-|.|| +|- .....|.|..||+|.+||.
T Consensus 52 YClHG-~C~yI~dl~~~~CrC~~GYtGeRCEh 82 (139)
T PHA03099 52 YCLHG-DCIHARDIDGMYCRCSHGYTGIRCQH 82 (139)
T ss_pred EeECC-EEEeeccCCCceeECCCCcccccccc
Confidence 35565 784 3456899999999999994
No 68
>PF00052 Laminin_B: Laminin B (Domain IV); InterPro: IPR000034 Laminins represent a distinct family of extracellular matrix proteins present only in basement membranes in almost every animal tissue. They are heterotrimeric molecules composed of alpha, beta and gamma subunits (formerly A, B1, and B2, respectively []) and form a cruciform structure consisting of 3 short arms, each formed by a different chain, and a long arm composed of all 3 chains, [, ]. Most of the globular domains of the short arms correspond to one of two different motifs, the 200-residue laminin N-terminal (domain VI) (LN) module and the 250-residue laminin domain IV (L4) module []. All alpha chains share a unique C-terminal G domain which consists of five laminin G modules. The laminins can self-assemble, bind to other matrix macromolecules, and have unique and shared cell interactions mediated by integrins, dystroglycan, and other receptors. There are at least 14 laminin isoforms that regulate a variety of cellular functions including cell adhesion, migration, proliferation, signalling and differentiation [, , ]. The laminin B domain (also known as domain IV) is an extracellular module of unknown function. It is found in a number of different proteins that include, heparan sulphate proteoglycan from basement membrane, a laminin-like protein from Caenorhabditis elegans and laminin. Laminin IV domain is not found in short laminin chains (alpha4 or beta3).
Probab=33.39 E-value=16 Score=39.11 Aligned_cols=86 Identities=14% Similarity=0.045 Sum_probs=0.0
Q ss_pred CcCCCCCCCCCCccCCCCCCCCcCCcccccCCCCcccccCCCCcCCccccCCCccccCCCCcCCccccccCCCccccccc
Q psy12394 1509 YWNLKASNPDGCEDCDCYTLGTIGGIKNCNPKSGQCVCKATAMNRKCDACVDGTYALQDNNLFGCTECACDIGGSINNLC 1588 (1873)
Q Consensus 1509 y~~~~~~~~~~C~~C~C~~~~s~~g~~~c~~~tgqC~C~~g~~g~~Cd~C~~g~~~~~~~~~~gc~~c~C~~~~s~~~~c 1588 (1873)
||.+|....+. ...+|+|.+..+.. +.+ .......||+++.|...- .......++-
T Consensus 1 Yw~aP~~flGn-------~l~SYGg~L~ytl~---------~~~------~~~~~~~~dViL~G~~~~--l~~~~~~~~~ 56 (136)
T PF00052_consen 1 YWSAPESFLGN-------KLTSYGGYLRYTLS---------YDG------SGSSPSAPDVILEGNGLT--LSYRYSEQPF 56 (136)
T ss_pred CccCChhHcCC-------CceecCCeEEEEEE---------Eec------CCCcCCCCCEEEEeCCeE--EEEEeeccCC
Q ss_pred cc--cccccccEEEee-----------------eeecccccccccccce
Q psy12394 1589 NK--SLIWMSSFRMVS-----------------FTKLSSQSNIVLPGLV 1618 (1873)
Q Consensus 1589 ~~--~~~~~~~v~l~e-----------------~~~l~~~~~~~~~~~~ 1618 (1873)
.. ....+..+.|.| .+-|++|+.|+||+.|
T Consensus 57 ~~p~~~~~~~~v~l~E~~w~~~~~~~~~tr~~fm~vL~nl~~i~Ira~y 105 (136)
T PF00052_consen 57 PIPSDEPTTYTVRLHESNWRFHSSGGPVTREEFMMVLANLTAILIRASY 105 (136)
T ss_pred cCCCCccEEEEEEEeecccccccCCCCCCHHHHHHHHhCccEEEEEEEe
No 69
>PF03944 Endotoxin_C: delta endotoxin; InterPro: IPR005638 This family contains insecticidal toxins produced by Bacillus species of bacteria. During spore formation the bacteria produce crystals of this protein. When an insect ingests these proteins, they are activated by proteolytic cleavage. The N terminus is cleaved in all of the proteins and a C-terminal extension is cleaved in some members. Once activated, the endotoxin binds to the gut epithelium and causes cell lysis by the formation of cation-selective channels, which leads to death. The activated region of the delta toxin is composed of three distinct structural domains: an N-terminal helical bundle domain (IPR005639 from INTERPRO) involved in membrane insertion and pore formation; a beta-sheet central domain (IPR001178 from INTERPRO) involved in receptor binding; and a C-terminal beta-sandwich domain that interacts with the N-terminal domain to form a channel [, ]. This entry represents the conserved C-terminal domain.; PDB: 1DLC_A 1JI6_A 1W99_A 1CIY_A 1I5P_A 2C9K_A 3EB7_A.
Probab=31.02 E-value=2.9e+02 Score=29.89 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=22.6
Q ss_pred CCceEEecCCCce-EEEeec--cCCCccEEEEEEeecCC
Q psy12394 1038 KTGLVYLDHKDAM-VDIAGT--VNNPGAYVFVVHFYQPD 1073 (1873)
Q Consensus 1038 ~~~~v~l~~~~~~-~~~~~~--v~~~g~Yv~vi~y~~~~ 1073 (1873)
+..+|.|...+.. +.+... .+.+.+|.|.|+|+...
T Consensus 26 GGdlv~l~~~~~~~~~~~v~~~~~~~~~YrIRiRYAs~~ 64 (143)
T PF03944_consen 26 GGDLVKLSNSGSLSIKIRVTINNSSSQKYRIRIRYASNS 64 (143)
T ss_dssp SS-EEEESSSCEECEEEEEEESSSSTEEEEEEEEEEESS
T ss_pred CCcEEEEcCCCceEEEEEEEecCCCCceEEEEEEEEECC
Confidence 3456666655433 344433 56778999999998643
No 70
>PTZ00214 high cysteine membrane protein Group 4; Provisional
Probab=29.17 E-value=3.3e+02 Score=37.94 Aligned_cols=16 Identities=31% Similarity=0.775 Sum_probs=11.7
Q ss_pred CceeeCCCcc----cCCCCc
Q psy12394 707 GKCQCEKNFG----GDRCER 722 (1873)
Q Consensus 707 g~C~C~~g~~----G~~Ce~ 722 (1873)
.+|+|..||. |..|+.
T Consensus 682 ~~C~C~~g~~p~~~~~~C~~ 701 (800)
T PTZ00214 682 RRCWCERGFLPALDRSGCVL 701 (800)
T ss_pred ceeEecCCcccccCCCcccc
Confidence 4688888886 666764
No 71
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=26.95 E-value=41 Score=27.16 Aligned_cols=18 Identities=44% Similarity=0.855 Sum_probs=14.7
Q ss_pred eccCCCCCeeeCCCCccc
Q psy12394 413 YCEPASGQQCPCKENYAG 430 (1873)
Q Consensus 413 ~cd~~~g~~C~C~~g~~G 430 (1873)
.||+.+.++|.|++||.=
T Consensus 11 ~CDpn~~~~C~CPeGyIl 28 (34)
T PF09064_consen 11 DCDPNSPGQCFCPEGYIL 28 (34)
T ss_pred ccCCCCCCceeCCCceEe
Confidence 478877789999999963
No 72
>KOG4611|consensus
Probab=24.81 E-value=81 Score=37.80 Aligned_cols=55 Identities=31% Similarity=0.907 Sum_probs=35.4
Q ss_pred CCCCcCCCCCcCCCCCCCCccccCCCCCCCCCCcccCCCceeeccCC-------------cccCCCcccCCCcccCC--C
Q psy12394 1271 KKCDQCEPNTFGYDPIIGCEECNCHPHGVNGTQQCDLFDGSCSCKEN-------------IVGRTCDHCVEGHWSFP--Y 1335 (1873)
Q Consensus 1271 ~~C~~C~~g~~g~~~~~~C~~C~C~~~gs~~~~~C~~~~G~C~C~~~-------------~~G~~C~~C~~G~~g~p--~ 1335 (1873)
+.|+.|+.|+...+...||.-|+ .|.|.|+.. ..-..|-.|+.|||.+. .
T Consensus 50 ptceecpegtlsspdqtgclncn---------------ngtchcpsqstlifrdasgnlltndafcgncasgfyrndngy 114 (747)
T KOG4611|consen 50 PTCEECPEGTLSSPDQTGCLNCN---------------NGTCHCPSQSTLIFRDASGNLLTNDAFCGNCASGFYRNDNGY 114 (747)
T ss_pred CccccCCCcccCCCccCCceecC---------------CCccCCCCcceEEEEcCCCCeeccccccccccccceECCCcc
Confidence 67999999998866667886443 223333221 11346778999999875 3
Q ss_pred CCCcc
Q psy12394 1336 CVPCE 1340 (1873)
Q Consensus 1336 C~~C~ 1340 (1873)
|..|.
T Consensus 115 ctkce 119 (747)
T KOG4611|consen 115 CTKCE 119 (747)
T ss_pred ccccc
Confidence 66553
Done!