Query psy12394
Match_columns 1873
No_of_seqs 738 out of 3765
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 18:05:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12394.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12394hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aqs_A Laminin subunit beta-1; 100.0 2.5E-53 8.6E-58 546.4 16.8 329 3-343 124-525 (525)
2 2y38_A Laminin subunit alpha-5 100.0 3.7E-48 1.3E-52 468.2 13.7 220 1-220 127-396 (403)
3 4aqt_A Laminin subunit gamma-1 100.0 9.4E-41 3.2E-45 403.5 11.2 198 4-222 123-370 (375)
4 3zyj_B Netrin-G1; cell adhesio 100.0 1.2E-37 4E-42 377.1 9.0 199 3-243 153-420 (426)
5 3tbd_A Netrin-G2, laminet-2; l 100.0 1.1E-29 3.9E-34 298.0 7.1 128 2-140 124-316 (338)
6 1klo_A Laminin; glycoprotein; 99.8 5.4E-22 1.9E-26 215.1 7.2 141 1247-1389 1-162 (162)
7 4aqs_A Laminin subunit beta-1; 99.8 9.6E-20 3.3E-24 234.4 11.9 225 617-874 279-521 (525)
8 1klo_A Laminin; glycoprotein; 99.8 2.7E-20 9.2E-25 201.8 5.6 145 691-843 1-162 (162)
9 2gy5_A Angiopoietin-1 receptor 99.6 2.6E-15 9E-20 186.5 11.4 140 226-388 207-350 (423)
10 2gy5_A Angiopoietin-1 receptor 99.6 3.6E-15 1.2E-19 185.3 11.2 143 1212-1366 210-378 (423)
11 2ygq_A WIF-1, WNT inhibitory f 99.6 2.1E-15 7.3E-20 181.3 8.5 153 226-436 157-309 (324)
12 2ygq_A WIF-1, WNT inhibitory f 99.5 5.4E-15 1.8E-19 177.8 8.1 155 563-775 157-311 (324)
13 2y38_A Laminin subunit alpha-5 99.5 2.7E-15 9.1E-20 182.0 4.3 108 1642-1805 285-392 (403)
14 2vj2_A Jagged-1; signalling, p 99.5 1.9E-14 6.4E-19 157.4 5.4 149 234-434 16-168 (169)
15 2vj2_A Jagged-1; signalling, p 99.4 7.7E-14 2.6E-18 152.5 4.2 151 571-772 16-169 (169)
16 4fbr_A Lectin, myxobacterial h 99.4 3.3E-16 1.1E-20 179.3 -16.7 149 226-434 42-201 (267)
17 3fcs_B Integrin beta-3; beta p 99.3 4.5E-12 1.5E-16 164.9 12.5 162 174-388 452-628 (690)
18 3fcs_B Integrin beta-3; beta p 99.3 6.6E-12 2.3E-16 163.3 13.0 164 226-434 444-627 (690)
19 4aqt_A Laminin subunit gamma-1 99.2 1.4E-12 4.9E-17 157.9 3.2 108 1280-1390 243-367 (375)
20 3k6s_B Integrin beta-2; cell r 99.2 5.2E-12 1.8E-16 163.7 7.7 150 226-411 439-607 (687)
21 4fbr_A Lectin, myxobacterial h 99.2 6.8E-15 2.3E-19 168.4 -17.4 192 156-431 53-265 (267)
22 3k6s_B Integrin beta-2; cell r 99.2 1.7E-11 5.8E-16 158.9 9.3 161 655-858 440-623 (687)
23 4d90_A EGF-like repeat and dis 99.0 2.8E-10 9.4E-15 120.8 8.1 116 307-435 2-133 (143)
24 2vj3_A Neurogenic locus notch 99.0 3.4E-10 1.1E-14 119.0 7.5 109 212-343 4-119 (135)
25 2vj3_A Neurogenic locus notch 99.0 6.7E-10 2.3E-14 116.7 8.4 107 306-434 6-118 (135)
26 1z1y_A Ookinete surface protei 98.9 2.3E-10 7.9E-15 127.0 0.2 141 261-435 8-175 (186)
27 4d90_A EGF-like repeat and dis 98.8 3.9E-09 1.3E-13 111.9 7.6 112 215-343 2-133 (143)
28 1z1y_A Ookinete surface protei 98.8 5.9E-10 2E-14 123.8 -0.6 135 228-388 16-175 (186)
29 3zyj_B Netrin-G1; cell adhesio 98.8 2E-09 6.9E-14 131.1 3.0 108 1244-1364 294-420 (426)
30 1tpg_A T-plasminogen activator 98.6 1.9E-08 6.4E-13 98.1 3.9 85 327-435 1-86 (91)
31 1tpg_A T-plasminogen activator 98.3 1.6E-07 5.5E-12 91.5 3.4 81 282-388 2-86 (91)
32 2p28_B Integrin beta-2; hybrid 98.1 9.1E-07 3.1E-11 99.8 4.1 97 321-435 102-214 (217)
33 2bou_A EGF-like module contain 98.1 1.8E-06 6.2E-11 91.4 4.6 105 312-434 8-133 (143)
34 2p28_B Integrin beta-2; hybrid 98.0 1.4E-06 4.7E-11 98.3 3.0 98 226-343 100-214 (217)
35 2bou_A EGF-like module contain 98.0 3.3E-06 1.1E-10 89.3 4.5 112 700-828 12-138 (143)
36 1uzk_A Fibrillin-1; glycoprote 98.0 1E-06 3.4E-11 95.5 -0.1 35 212-250 2-43 (162)
37 1yo8_A Thrombospondin-2; EGF, 97.9 8.4E-06 2.9E-10 104.9 5.9 113 212-343 2-146 (634)
38 1yo8_A Thrombospondin-2; EGF, 97.8 9.3E-06 3.2E-10 104.5 5.7 111 306-434 4-145 (634)
39 2w86_A Fibrillin-1, fibrillin1 97.8 1.5E-06 5.2E-11 92.5 -1.9 49 373-432 88-141 (147)
40 3u7u_G Neuregulin 1; signaling 97.8 1.1E-05 3.7E-10 70.4 3.5 47 383-435 1-49 (55)
41 1dx5_I Thrombomodulin; serine 97.7 4.9E-06 1.7E-10 85.1 -0.3 99 306-432 5-112 (118)
42 2wg3_C Hedgehog-interacting pr 97.6 9.2E-06 3.1E-10 102.5 -0.0 78 573-677 378-455 (463)
43 1dx5_I Thrombomodulin; serine 97.6 1.1E-05 3.6E-10 82.6 0.2 99 211-339 2-111 (118)
44 2c4f_L Coagulation factor VII 97.6 4E-05 1.4E-09 81.0 4.5 76 212-297 46-129 (142)
45 2c4f_L Coagulation factor VII 97.5 3.8E-05 1.3E-09 81.1 3.3 70 356-434 49-128 (142)
46 2wg3_C Hedgehog-interacting pr 97.4 3.6E-05 1.2E-09 97.1 1.2 77 619-722 379-455 (463)
47 1x7a_L Coagulation factor IX, 97.3 0.00016 5.5E-09 76.7 4.7 67 356-434 50-125 (146)
48 1x7a_L Coagulation factor IX, 97.2 0.00026 8.8E-09 75.1 5.2 70 212-297 47-126 (146)
49 3u7u_G Neuregulin 1; signaling 97.1 0.00014 4.8E-09 63.4 2.2 43 245-297 1-49 (55)
50 3tbd_A Netrin-G2, laminet-2; l 97.1 0.00012 3.9E-09 86.8 1.5 45 1737-1801 269-313 (338)
51 2w86_A Fibrillin-1, fibrillin1 97.1 3.3E-05 1.1E-09 82.1 -3.4 126 640-822 4-141 (147)
52 1uzk_A Fibrillin-1; glycoprote 97.0 3.7E-05 1.3E-09 83.1 -3.1 131 641-822 4-156 (162)
53 1emn_A Fibrillin; extracellula 97.0 0.00046 1.6E-08 65.6 4.2 61 360-432 12-77 (82)
54 1nfu_B Coagulation factor XA, 97.0 0.00014 4.8E-09 80.5 0.5 69 356-435 44-121 (195)
55 1aut_L Activated protein C; se 96.9 0.00054 1.9E-08 69.4 4.6 98 255-369 3-107 (114)
56 1nfu_B Coagulation factor XA, 96.9 0.00014 4.9E-09 80.4 0.3 71 212-297 41-121 (195)
57 1edm_B Factor IX; epidermal gr 96.8 0.00057 1.9E-08 55.2 3.1 37 395-434 2-38 (39)
58 2vh0_B Activated factor XA lig 96.8 0.00023 7.9E-09 74.3 0.5 68 356-434 44-120 (134)
59 3h5c_B Vitamin K-dependent pro 96.8 0.0012 4.2E-08 79.1 6.8 67 355-432 6-77 (317)
60 1aut_L Activated protein C; se 96.8 0.0009 3.1E-08 67.8 4.8 61 362-431 22-86 (114)
61 2vh0_B Activated factor XA lig 96.8 0.00023 7.7E-09 74.4 0.3 71 212-297 41-121 (134)
62 1emn_A Fibrillin; extracellula 96.8 0.00089 3E-08 63.6 4.4 67 212-294 4-77 (82)
63 1n7d_A LDL receptor, low-densi 96.7 0.064 2.2E-06 71.3 23.3 54 322-387 187-250 (699)
64 3h5c_B Vitamin K-dependent pro 96.6 0.0015 5.3E-08 78.2 6.0 68 212-294 4-77 (317)
65 3ca7_A Protein spitz; argos, E 96.4 0.0004 1.4E-08 60.0 -0.8 44 374-435 4-48 (52)
66 1a3p_A Epidermal growth factor 96.3 0.0026 8.9E-08 53.1 3.6 37 398-435 2-41 (45)
67 1edm_B Factor IX; epidermal gr 96.2 0.0035 1.2E-07 50.5 4.1 36 212-250 2-39 (39)
68 1egf_A Epidermal growth factor 96.2 0.0038 1.3E-07 54.1 4.4 39 396-435 3-44 (53)
69 1z6c_A Vitamin K-dependent pro 96.2 0.0019 6.5E-08 62.1 2.5 59 362-434 13-77 (87)
70 1n7d_A LDL receptor, low-densi 96.0 0.064 2.2E-06 71.2 17.1 156 227-431 185-365 (699)
71 1k36_A Epiregulin; EGF-like fo 96.0 0.0027 9.1E-08 53.3 2.4 38 396-435 3-43 (46)
72 1lmj_A Fibrillin 1; EGF, calci 96.0 0.0019 6.5E-08 61.9 1.7 67 212-294 2-80 (86)
73 1lmj_A Fibrillin 1; EGF, calci 96.0 0.0018 6E-08 62.1 1.2 59 362-432 13-80 (86)
74 1z6c_A Vitamin K-dependent pro 95.8 0.0035 1.2E-07 60.1 2.4 68 212-297 2-78 (87)
75 3ca7_A Protein spitz; argos, E 95.4 0.0017 5.8E-08 56.1 -1.1 29 360-388 14-48 (52)
76 1hae_A Heregulin-alpha; growth 95.4 0.0044 1.5E-07 55.7 1.4 39 397-435 7-47 (63)
77 2k2s_B Micronemal protein 6; m 95.3 0.0033 1.1E-07 56.0 0.2 36 396-434 11-49 (61)
78 1hae_A Heregulin-alpha; growth 95.2 0.0048 1.7E-07 55.4 1.0 36 353-388 5-47 (63)
79 2w2n_E LDL receptor, low-densi 95.2 0.0072 2.5E-07 60.4 2.3 54 367-432 42-101 (107)
80 2w2n_E LDL receptor, low-densi 95.0 0.0086 2.9E-07 59.8 2.4 54 228-294 41-101 (107)
81 1nql_B Epidermal growth factor 94.9 0.0083 2.8E-07 51.9 1.5 34 401-435 11-44 (53)
82 1egf_A Epidermal growth factor 94.8 0.024 8.1E-07 49.0 4.3 36 212-250 2-44 (53)
83 3m0c_C LDL receptor, low-densi 94.2 0.039 1.3E-06 74.1 6.5 85 331-434 257-350 (791)
84 1k36_A Epiregulin; EGF-like fo 94.2 0.02 6.8E-07 48.0 2.3 28 360-388 12-43 (46)
85 1a3p_A Epidermal growth factor 94.1 0.033 1.1E-06 46.4 3.5 25 226-250 13-41 (45)
86 1nql_B Epidermal growth factor 94.0 0.03 1E-06 48.4 3.0 35 354-388 6-44 (53)
87 2k2s_B Micronemal protein 6; m 92.9 0.03 1E-06 49.8 1.4 36 212-250 10-50 (61)
88 2fd6_A Urokinase-type plasmino 92.1 0.091 3.1E-06 53.7 3.9 54 226-297 5-63 (122)
89 3m0c_C LDL receptor, low-densi 92.0 0.18 6.3E-06 67.5 7.8 53 367-431 325-383 (791)
90 3ltf_D Protein spitz; receptor 91.9 0.045 1.5E-06 48.2 1.2 33 403-435 15-48 (58)
91 2fd6_A Urokinase-type plasmino 91.9 0.087 3E-06 53.8 3.4 56 361-434 2-62 (122)
92 3ltf_D Protein spitz; receptor 91.6 0.049 1.7E-06 48.0 1.1 28 361-388 15-48 (58)
93 3p5b_L Low density lipoprotein 90.9 0.15 5.1E-06 62.9 4.9 64 357-432 3-72 (400)
94 3p5b_L Low density lipoprotein 90.8 0.17 5.7E-06 62.5 5.2 55 226-293 10-71 (400)
95 3v65_B Low-density lipoprotein 90.0 0.082 2.8E-06 64.9 1.3 67 212-296 2-82 (386)
96 3v65_B Low-density lipoprotein 88.4 0.12 4E-06 63.6 1.1 57 366-434 15-82 (386)
97 2ddu_A Reelin; beta-jelly-roll 88.0 0.16 5.5E-06 61.0 1.9 96 8-125 99-224 (387)
98 1q4g_A Prostaglandin G/H synth 87.3 0.19 6.6E-06 64.3 2.1 37 396-435 2-40 (553)
99 3nt1_A Prostaglandin-endoperox 85.8 0.3 1E-05 62.7 2.6 37 397-435 2-39 (587)
100 1g1s_A P-selectin; selectin, l 85.6 0.31 1E-05 52.0 2.3 36 397-435 120-155 (162)
101 2i9a_A Urokinase-type plasmino 82.5 1.1 3.7E-05 47.1 4.8 58 219-297 13-75 (145)
102 1iox_A Betacellulin; EGF-like 82.0 0.63 2.2E-05 39.6 2.2 32 402-435 14-45 (50)
103 3e50_C Protransforming growth 82.0 0.88 3E-05 38.7 3.1 32 402-435 14-45 (50)
104 2ygo_A WIF-1, WNT inhibitory f 81.6 0.82 2.8E-05 49.5 3.5 23 655-677 158-180 (188)
105 1g1s_A P-selectin; selectin, l 80.9 0.55 1.9E-05 50.0 1.9 32 357-388 122-155 (162)
106 1xdt_R Hbegf, heparin-binding 80.0 0.76 2.6E-05 42.8 2.2 32 401-434 45-76 (79)
107 3urf_Z Tumor necrosis factor r 78.6 0.99 3.4E-05 48.7 3.0 48 1271-1319 39-91 (171)
108 2rnl_A Amphiregulin; AR, color 77.8 1.6 5.4E-05 37.2 3.3 31 402-434 18-48 (50)
109 3e50_C Protransforming growth 77.8 1.2 4.1E-05 37.9 2.6 28 360-388 14-45 (50)
110 1jma_B Herpesvirus entry media 76.9 0.88 3E-05 49.0 2.0 44 1228-1292 13-58 (167)
111 2i9a_A Urokinase-type plasmino 75.7 1.5 5.2E-05 46.0 3.3 35 400-435 11-46 (145)
112 3qd6_R CD40L receptor, tumor n 73.8 2.9 9.8E-05 45.4 5.0 27 1364-1390 118-144 (177)
113 2ygo_A WIF-1, WNT inhibitory f 73.4 2 6.9E-05 46.5 3.6 24 699-722 157-180 (188)
114 1sg1_X Tumor necrosis factor r 73.4 2.3 8E-05 45.3 4.1 25 1366-1390 115-139 (161)
115 3u3p_A Tumor necrosis factor r 73.3 2.3 7.8E-05 49.9 4.3 97 1271-1390 45-148 (313)
116 1iox_A Betacellulin; EGF-like 72.7 1.3 4.5E-05 37.6 1.6 28 360-388 14-45 (50)
117 3urf_Z Tumor necrosis factor r 72.7 3.9 0.00013 44.1 5.7 27 1445-1471 118-146 (171)
118 3me4_A Tumor necrosis factor r 72.5 1.1 3.8E-05 50.2 1.4 26 1365-1390 146-171 (216)
119 3fl7_A Ephrin receptor; ATP-bi 72.1 1.6 5.5E-05 55.7 3.0 64 1249-1318 252-318 (536)
120 2w47_A Lipolytic enzyme, G-D-S 71.6 26 0.00089 36.3 11.6 95 1046-1147 37-133 (144)
121 3nt1_A Prostaglandin-endoperox 71.3 1.6 5.4E-05 56.0 2.6 34 214-250 2-39 (587)
122 1xdt_R Hbegf, heparin-binding 69.2 2.3 7.7E-05 39.7 2.4 29 359-388 45-77 (79)
123 1q4g_A Prostaglandin G/H synth 68.4 2.3 7.8E-05 54.4 3.1 34 214-250 3-40 (553)
124 3fl7_A Ephrin receptor; ATP-bi 68.1 2.1 7.1E-05 54.7 2.7 55 1304-1363 257-317 (536)
125 3alq_R Tumor necrosis factor r 67.4 1.9 6.4E-05 46.7 1.8 23 1367-1389 127-149 (173)
126 3me4_A Tumor necrosis factor r 67.3 4.5 0.00015 45.3 4.8 26 1499-1524 147-172 (216)
127 3k51_B Decoy receptor 3; DCR3, 66.6 3.2 0.00011 45.0 3.4 45 1321-1365 41-93 (176)
128 3qd6_R CD40L receptor, tumor n 66.5 9.7 0.00033 41.2 7.2 26 1499-1524 120-145 (177)
129 2bgo_A Endo-B1,4-mannanase 5C; 65.2 23 0.0008 36.5 9.1 91 1044-1147 31-124 (140)
130 1g1t_A E-selectin; EGF, adhesi 64.4 2.1 7.1E-05 45.1 1.4 36 397-435 120-155 (157)
131 3cfw_A L-selectin; EGF, cell a 63.8 2.9 0.0001 44.3 2.4 35 398-435 121-155 (164)
132 2uwi_A CRME protein; receptor, 62.5 1.5 5E-05 46.0 -0.3 43 1230-1293 16-60 (142)
133 2rnl_A Amphiregulin; AR, color 61.0 3.8 0.00013 34.8 2.1 28 360-388 18-49 (50)
134 3u3p_A Tumor necrosis factor r 60.0 9.5 0.00033 44.7 5.9 27 1445-1471 124-152 (313)
135 2p26_A Integrin beta-2; hybrid 57.9 4.8 0.00016 46.8 3.0 57 757-819 207-263 (280)
136 3asi_A Neurexin-1-alpha; beta- 57.7 5.1 0.00018 49.3 3.4 37 396-435 185-222 (410)
137 1jma_B Herpesvirus entry media 57.6 7 0.00024 41.9 4.0 46 1320-1390 13-58 (167)
138 2e26_A Reelin, reeler protein; 57.6 1.4 4.9E-05 56.9 -1.6 46 574-632 520-565 (725)
139 2w3j_A Carbohydrate binding mo 56.4 43 0.0015 34.8 9.8 92 1045-1146 35-130 (145)
140 4d8m_A Pesticidal crystal prot 54.6 39 0.0013 42.8 10.4 102 1038-1145 476-585 (587)
141 2w87_A Esterase D, XYL-CBM35; 54.0 57 0.0019 33.6 10.1 41 1046-1086 36-76 (139)
142 2p26_A Integrin beta-2; hybrid 53.8 6.4 0.00022 45.8 3.1 16 706-721 206-221 (280)
143 2e26_A Reelin, reeler protein; 52.8 2.6 9E-05 54.6 -0.4 42 710-772 521-565 (725)
144 1sg1_X Tumor necrosis factor r 49.5 25 0.00086 37.2 6.7 60 1450-1524 80-140 (161)
145 2wz8_A Cellulosome protein doc 48.8 52 0.0018 34.7 8.9 89 1048-1146 46-150 (156)
146 1g1t_A E-selectin; EGF, adhesi 48.4 5.8 0.0002 41.6 1.5 31 358-388 123-155 (157)
147 3cfw_A L-selectin; EGF, cell a 48.0 9 0.00031 40.5 2.9 29 360-388 125-155 (164)
148 1ext_A Tumor necrosis factor r 47.1 11 0.00037 40.2 3.4 63 1656-1736 40-106 (162)
149 3k51_B Decoy receptor 3; DCR3, 46.0 18 0.00063 39.0 5.0 25 1500-1524 121-145 (176)
150 2w47_A Lipolytic enzyme, G-D-S 44.2 71 0.0024 32.9 9.1 96 875-985 39-134 (144)
151 2vzp_A Aocbm35, EXO-beta-D-glu 42.4 1.1E+02 0.0038 30.6 10.0 40 1046-1085 36-75 (127)
152 3alq_R Tumor necrosis factor r 41.8 14 0.0005 39.6 3.4 24 1500-1523 127-150 (173)
153 1skz_A Antistasin; factor XA i 41.3 11 0.00038 37.8 2.1 92 1243-1343 7-110 (119)
154 2hey_R Tumor necrosis factor r 40.0 15 0.0005 38.4 3.0 64 1229-1292 38-120 (146)
155 1skz_A Antistasin; factor XA i 37.7 22 0.00077 35.6 3.7 92 1287-1394 6-110 (119)
156 3qcw_A Neurexin-1-alpha; synap 36.9 14 0.00049 52.1 3.0 36 397-435 1018-1054(1245)
157 1apq_A Complement protease C1R 36.7 16 0.00054 30.8 2.1 25 402-431 20-44 (53)
158 2uwi_A CRME protein; receptor, 36.3 7.8 0.00027 40.4 0.1 64 1654-1736 34-103 (142)
159 3f2z_A Uncharacterized protein 33.7 60 0.002 33.9 6.6 64 5-89 81-148 (159)
160 1apq_A Complement protease C1R 31.3 27 0.00092 29.3 2.7 19 228-246 24-44 (53)
161 1gl4_A Nidogen-1, entactin; im 30.4 14 0.00047 42.9 0.9 8 1052-1059 169-176 (285)
162 1ext_A Tumor necrosis factor r 30.0 13 0.00045 39.5 0.6 25 1552-1576 39-63 (162)
163 1gl4_A Nidogen-1, entactin; im 29.5 13 0.00045 43.0 0.5 34 395-431 4-39 (285)
164 3qcw_A Neurexin-1-alpha; synap 28.8 22 0.00074 50.2 2.7 37 396-435 619-656 (1245)
165 2hey_R Tumor necrosis factor r 28.6 42 0.0014 34.9 4.2 51 1445-1497 37-89 (146)
166 1mox_A Epidermal growth factor 25.8 41 0.0014 42.4 4.1 76 1310-1390 222-305 (501)
167 3ggl_A Putative chitobiase; X- 25.0 1.2E+02 0.0041 31.9 7.1 65 4-89 90-158 (169)
168 3asi_A Neurexin-1-alpha; beta- 24.4 37 0.0013 41.5 3.3 34 214-250 186-222 (410)
169 1n1i_A Merozoite surface prote 23.4 32 0.0011 33.6 1.9 23 746-768 20-43 (105)
170 2kl7_A Fibulin-4; secreted, ca 20.7 44 0.0015 30.3 2.2 33 395-430 2-37 (71)
No 1
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}
Probab=100.00 E-value=2.5e-53 Score=546.39 Aligned_cols=329 Identities=32% Similarity=0.765 Sum_probs=249.7
Q ss_pred CCCCCCceEEEeeccCC-----------------------------------------------eEEEccCCCCCCCCCC
Q psy12394 3 NSPRPAVWALERSADNG-----------------------------------------------ITISLLDHRPSMKNFF 35 (1873)
Q Consensus 3 ~sprp~~~~~ers~d~g-----------------------------------------------i~~s~~~~rp~~~~~~ 35 (1873)
+||||++||||||+|+| |+|++|++||++.+ .
T Consensus 124 ~s~rP~~~~ieks~d~g~tw~p~qy~a~~C~~~f~~~~~~~~~~~~~v~Ct~~~s~~~p~~~g~v~~~~~~~~~~~~~-~ 202 (525)
T 4aqs_A 124 KTFRPAAMLIERSSDFGKAWGVYRYFAYDCESSFPGISTGPMKKVDDIICDSRYSDIEPSTEGEVIFRALDPAFKIED-P 202 (525)
T ss_dssp SSCCCSEEEEEEESSTTSSCEEEEEEESSTTTTSSSSCCSCCSSTTCCCEECTTCCSCSTTTCEEEEESSCSSSCCSC-T
T ss_pred ECCCCCeEEEEEecCCCCCCcceeeehhhhhhhcCCCCCCCCCCCCcceecccCCCCCCCCCCeEEEEecCCCcccCC-C
Confidence 79999999999999988 99999999999865 5
Q ss_pred CchhhhhheeeeeeeEeeccccccccccccccCCCCCcceeeeEEeeeeeeeeeeccCCCCCcCccCCC-----CCCccc
Q psy12394 36 NSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIKDISIGGRCRCNGHADVCDILDP-----EDPYHR 110 (1873)
Q Consensus 36 ~s~~l~~~~~at~ir~~~~~~~t~~~~~~~~~~~~~~~~~~~yYai~d~~v~grC~C~gHa~~C~~~~~-----~~~~~~ 110 (1873)
+|++||||++||||||||+|++||++++|+ .++.++++|||||+||+|+|||+|||||++|++.+. .+..++
T Consensus 203 ~s~~l~~~~~~t~iri~~~~~~~~~~~~~~---~~~~~~~~~~Yai~di~v~grC~CnGHa~~C~p~~g~~~~~~g~~~g 279 (525)
T 4aqs_A 203 YSPRIQNLLKITNLRIKFVKLHTLGDNLLD---SRMEIREKYYYAVYDMVVRGNCFCYGHASECAPVDGVNEEVEGMVHG 279 (525)
T ss_dssp TSHHHHHHHEEEEEEEEEEECCCTTCCCTT---CCHHHHTTCCCEEEEEEEEEECCCTTBCSCEECC------CCSCCCC
T ss_pred CChhhhhhhhhhhhhhheeccccccccccc---ccccccccccEEEEeeEECeEeccCCccccCCCcCCcccCCCCCcCc
Confidence 699999999999999999999999999875 567788999999999999999999999999987542 345678
Q ss_pred eeecCCCCCCCCCCCCCCCccCCcCCcCCCCCCCCccCCCCCCCCCccccCccccccCcccccCcCcCCCceeCCCCCCC
Q psy12394 111 ICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSCEPCNCHGHADKCVYDPMVDEKRLSVDIQGNYEGGGVCQECRDNT 190 (1873)
Q Consensus 111 ~C~C~h~t~G~~Ce~c~p~~~~~p~~~~~~~~~~~C~~C~C~~~~~~C~~d~~~~~~~~s~~~~g~~~~GG~C~~C~~~~ 190 (1873)
+|+|+|||+|++||+|+|+|++.||++++....+.+..|+|++|+..|.++...... ..+.+||+|.+|.++|
T Consensus 280 ~C~C~~G~~G~~Ce~C~~g~~~~p~~~~~c~~~~~~~~C~C~~~~~~C~~d~~~c~~-------~~~~~gg~C~~C~~g~ 352 (525)
T 4aqs_A 280 HCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEHSSSCHFDMAVFLA-------TGNVSGGVCDNCQHNT 352 (525)
T ss_dssp EECCCTTEESSSSCEECTTCCSSCCCCCBTTBCCCCCCCCCTTSCSEEEECHHHHHH-------TTSSCCEEEESCCTTE
T ss_pred cccCcCCCcCCCCcCCCCccCCCccCCCcccCCCcccccccCCCCCCCCCCcccccc-------cCccCCCcccCCCCCC
Confidence 999999999999999999999999999999899999999999999999998876543 3456899999999999
Q ss_pred CCCCCCCCCCCCccCCCCCCCCCCCCccCCCCCCC--CCCeeec--------CCCceecCCCCcCCCCcccCCcccCCC-
Q psy12394 191 EGINCHQRVAGYYRPYGKHLNETDVCQPCQCAFHY--ATGNCAE--------GTGKCECRPEYTKPDCNSCAFGYFGYP- 259 (1873)
Q Consensus 191 ~G~~Ce~C~~g~~~~~~~~~~~~~~C~~C~C~~~~--n~g~C~~--------~~g~C~C~~G~~G~~Ce~C~~g~~g~~- 259 (1873)
+|.+|++|.++|++.+.......+.+.+|.|++.. ++..|.. ..+.|.|+++|.|.+|++|++||++.+
T Consensus 353 ~G~~Ce~C~~g~~~~~~~~~~~~~~~~~C~C~~~~~~~~~~C~~~~~~~~~~~~~~C~C~~g~~G~~C~~C~~Gy~G~~c 432 (525)
T 4aqs_A 353 MGRNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSA 432 (525)
T ss_dssp ESTTSCEECTTEEECSSSCTTCTTCEEECCCCTTTBSGGGCCCCSCBGGGTBCSSCCCBCTTEETTTTCEECTTEECCCT
T ss_pred CCCCcccccCcccccCCCCCCCCCCCcCCCCCCCCCCCCccccCCCCCCcCCCCCccCCCCCCCCCcccCCCCCCcCCCC
Confidence 99999999999999998888888888899887654 2344432 346899999999999999999999865
Q ss_pred ----CCCCCCCCCCCCC--CceecCCCCCcccCCCCCccCCCccCCCCCCCC----CCCCCCCcCCCCCCCCcccCCCcc
Q psy12394 260 ----NCEPCKCHMNGTL--DFYCEPASGQQCPCKENYAGDHCDTCAQGYYNF----PTCSPCECNAVGSLSDLCEVDSGN 329 (1873)
Q Consensus 260 ----~C~~c~C~~~gt~--~~~C~~~~G~~C~C~~g~~G~~Ce~C~~Gf~g~----~~C~~c~C~~~gs~~~~C~~~~g~ 329 (1873)
.|.+++|++.|+. ++.|+..+| +|.|++||+|.+||+|++||+++ ..|++|+|+++|+.+..|+..+|+
T Consensus 433 ~~~~~C~~C~C~~~gtc~~~~~Cd~~tg-~C~C~~g~~G~~Ce~C~~G~~g~~~~~~~C~~C~C~~~gs~~~~C~~~tG~ 511 (525)
T 4aqs_A 433 EDPYGCKSCACNPLGTIPGGNPCDSETG-YCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQ 511 (525)
T ss_dssp TSTTSSEECCCCTTTBCCSSCCBCTTTC-CBCBCTTCCSTTTCC------------------------------------
T ss_pred CCCCCCccCCCCCCceecCCCcccCCCC-EEECCCCCcCCCcccCCCCccCCCCCCCCCcCCCCCCCCccCCccCCCCCe
Confidence 4888999988764 457888778 99999999999999999999986 349999999999999999999999
Q ss_pred cccCCCcccCCCcc
Q psy12394 330 CTCRNNFAGRTCDS 343 (1873)
Q Consensus 330 C~C~~G~~G~~Ce~ 343 (1873)
|.|++||+|.+||+
T Consensus 512 C~C~~G~~G~~Ceq 525 (525)
T 4aqs_A 512 CSCLPHMIGRQCNE 525 (525)
T ss_dssp --------------
T ss_pred eECCCCCcCCCCCC
Confidence 99999999999984
No 2
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.7e-48 Score=468.17 Aligned_cols=220 Identities=53% Similarity=1.102 Sum_probs=207.4
Q ss_pred CCCCCCCCceEEEeeccCC--------------------------------------------------eEEEccCCCCC
Q psy12394 1 MGNSPRPAVWALERSADNG--------------------------------------------------ITISLLDHRPS 30 (1873)
Q Consensus 1 ~~~sprp~~~~~ers~d~g--------------------------------------------------i~~s~~~~rp~ 30 (1873)
|+|||||++||||||+|+| |+||||+|||+
T Consensus 127 F~~spRP~~m~ierS~D~G~tW~p~qyfa~~~~dC~~~fg~~~~~~~~~~~~viCt~~ys~~~P~~~g~v~f~~l~gRP~ 206 (403)
T 2y38_A 127 FANSPRPDLWVLERSTDFGHTYQPWQFFASSKRDCLERFGPRTLERITQDDDVICTTEYSRIVPLENGEIVVSLVNGRPG 206 (403)
T ss_dssp ECSSCCCSEEEEEEESSSSSSEEEEEEECSSHHHHHHHTCTTTTSCCCSTTCCCEECSTTCSSSCSSCEEEEESSSSSGG
T ss_pred ecCCCCCCeEEEEeccCCCCCccceecccCCccchhhhcCCCCCCCCCCCCceeeeccCCCCcCCCCCeEEEEecCCCCC
Confidence 6799999999999999988 99999999999
Q ss_pred CCCCCCchhhhhheeeeeeeEeeccccccccccccccCCCCCcceeeeEEeeeeeeeeeeccCCCCCcCccCCCCCCccc
Q psy12394 31 MKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHR 110 (1873)
Q Consensus 31 ~~~~~~s~~l~~~~~at~ir~~~~~~~t~~~~~~~~~~~~~~~~~~~yYai~d~~v~grC~C~gHa~~C~~~~~~~~~~~ 110 (1873)
+.+|.+|++||||++||||||||+|++||++++|....+||.+.++|||||+||.|+|+|+|||||++|+..++.++..+
T Consensus 207 ~~~~~~s~~lq~~~~aT~iRi~~~~~~t~~~~l~~~~~~~~~~~~~yyyai~~~~vgg~C~CnGHA~~C~~~~~~~~~~g 286 (403)
T 2y38_A 207 ALNFSYSPLLRDFTKATNIRLRFLRTNTLLGHLMGKALRDPTVTRRYYYSIKDISIGGRCVCHGHADVCDAKDPLDPFRL 286 (403)
T ss_dssp GTTGGGCHHHHHHHEEEEEEEEEEECCCCTTCHHHHHHTCTTTGGGCCCEEEEEEEEEECCCTTBCSCEEESCTTSTTCE
T ss_pred cccCCcCHHHHhhhccceEEEEEEecCcccccccccccccccccccceeecccCccccccccCCCccccCCCCCCCccce
Confidence 99999999999999999999999999999999998778899999999999999999999999999999987655555678
Q ss_pred eeecCCCCCCCCCCCCCCCccCCcCCcCCCCCCCCccCCCCCCCCCccccCccccccCcccccCcCcCCCceeCCCCCCC
Q psy12394 111 ICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSCEPCNCHGHADKCVYDPMVDEKRLSVDIQGNYEGGGVCQECRDNT 190 (1873)
Q Consensus 111 ~C~C~h~t~G~~Ce~c~p~~~~~p~~~~~~~~~~~C~~C~C~~~~~~C~~d~~~~~~~~s~~~~g~~~~GG~C~~C~~~~ 190 (1873)
+|.|+|||+|++||+|+|+|+++||++++...++.|++|+||+|+.+|+||+.++....+.++.+...++|+|++|++||
T Consensus 287 ~C~C~hnT~G~~CErC~pGy~g~p~~~at~~~~~~C~pC~Cnghs~~C~~d~~~~~~~~s~~~~~~~~~~G~C~~C~~nt 366 (403)
T 2y38_A 287 QCACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVCLDCQHHT 366 (403)
T ss_dssp EECCCTTEESSSCCEECTTCCSSCCCCCCSSCCCCCCCCCCTTSCSCEEECHHHHHTTCCCCTTSCSCCCEEESSCCSSE
T ss_pred EeECcCcCcCCCCCCCCccccCCcccccccCCCccccccccCCCCcccccCcccccccccccccccCCCCCCCCCCcCcC
Confidence 89999999999999999999999999999999999999999999999999999888778888888888899998899999
Q ss_pred CCCCCCCCCCCCccCCCCCCCCCCCCccCC
Q psy12394 191 EGINCHQRVAGYYRPYGKHLNETDVCQPCQ 220 (1873)
Q Consensus 191 ~G~~Ce~C~~g~~~~~~~~~~~~~~C~~C~ 220 (1873)
+|.+||+|++||||++.+.++++++|++-.
T Consensus 367 ~G~~CErC~~GYyg~p~~~~~~~~~C~~~~ 396 (403)
T 2y38_A 367 TGINCERCLPGFFRAPDQPLDSPHVCRPAA 396 (403)
T ss_dssp ESTTSCEECTTCEECTTSCTTSTTSEECCC
T ss_pred cCCCCCcCCCCccCCCCCCCCCCCcccccc
Confidence 999999999999999999999999998754
No 3
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}
Probab=100.00 E-value=9.4e-41 Score=403.53 Aligned_cols=198 Identities=35% Similarity=0.828 Sum_probs=179.0
Q ss_pred CCCCCceEEEeeccCC--------------------------------------------------eEEEccCCCCCCCC
Q psy12394 4 SPRPAVWALERSADNG--------------------------------------------------ITISLLDHRPSMKN 33 (1873)
Q Consensus 4 sprp~~~~~ers~d~g--------------------------------------------------i~~s~~~~rp~~~~ 33 (1873)
||||++||||||+|+| |+|++|++||++.+
T Consensus 123 ~~rP~~m~Iers~d~G~tw~p~qyfa~~C~~~f~~~~~~~~~~~~~~~~viCt~~ys~~~p~~~g~v~~~~l~~rp~~~~ 202 (375)
T 4aqt_A 123 TSRPESFAIYKRTREDGPWIPYQYYSGSCENTYSKANRGFIRTGGDEQQALCTDEFSDISPLTGGNVAFSTLEGRPSAYN 202 (375)
T ss_dssp SSCCSEEEEEEESSSSSCCEEEEEEETTHHHHHSCCTTCCCCTTSCTTCCEEESTTCSCCSSSCEEEEEETTTTCTTGGG
T ss_pred CCCCCcEEEEEecCCCCCccceeeeecchhHhcCCCCCCCcCCCCCCCeeEeCCcCCCCcCCcCCeEEEEeccCCCCccc
Confidence 7899999999999998 99999999999999
Q ss_pred CCCchhhhhheeeeeeeEeeccccccccccccccCCCCCcceeeeEEeeeeeeeeeeccCCCCCcCccCCCCCCccceee
Q psy12394 34 FFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICR 113 (1873)
Q Consensus 34 ~~~s~~l~~~~~at~ir~~~~~~~t~~~~~~~~~~~~~~~~~~~yYai~d~~v~grC~C~gHa~~C~~~~~~~~~~~~C~ 113 (1873)
|++|++||||++||||||+|+|++||+++++ .||+++++|||||+||+|+|||+|||||+.|... +.....|.
T Consensus 203 ~~~s~~lq~~~~at~iRi~l~~~~~~~~~~~----~~~~~~~~yyYai~di~v~g~C~Cngh~s~c~~~---~~~~~~C~ 275 (375)
T 4aqt_A 203 FDNSPVLQEWVTATDIRVTLNRLNTFGDEVF----NEPKVLKSYYYAISDFAVGGRCKCNGHASECVKN---EFDKLMCN 275 (375)
T ss_dssp GGGCHHHHHHTEEEEEEEEEEECCCCSGGGS----CCHHHHTTCCCEEEEEEEEEEECCTTSCSCEEEC---TTSCEEEC
T ss_pred CCcCHHHhhhhhheeeeeeecccccCccccc----ccccccccceeeecccccCceecCCCCCcccCCC---CCCCeeee
Confidence 9999999999999999999999999999886 5788999999999999999999999999999653 34568899
Q ss_pred cCCCCCCCCCCCCCCCccCCcCCcCCCCCCCCccCCCCCCCCCccccCccccccCcccccCcCcCCCceeCCCCCCCCCC
Q psy12394 114 CQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSCEPCNCHGHADKCVYDPMVDEKRLSVDIQGNYEGGGVCQECRDNTEGI 193 (1873)
Q Consensus 114 C~h~t~G~~Ce~c~p~~~~~p~~~~~~~~~~~C~~C~C~~~~~~C~~d~~~~~~~~s~~~~g~~~~GG~C~~C~~~~~G~ 193 (1873)
|+|||+|.+||+|+|+|++.||++++..+++.|++|+|++|+..|.++...... +.++|+|.+|++||+|.
T Consensus 276 C~~nt~G~~Ce~C~~gy~~~p~~~g~~~~~~~C~~C~Cn~~g~~C~~d~~~~~c---------~~~~G~C~~C~~n~~G~ 346 (375)
T 4aqt_A 276 CKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRS---------TGHGGHCTNCRDNTDGA 346 (375)
T ss_dssp CCTTEESTTSCEECTTCCSSCCCCCCSSCCCCCCCCCGGGSCSCEEECHHHHHH---------SSCCEEECSCTTTEEST
T ss_pred CcCCCcCCCcccCCCCCcCCCCCCCccCCCCCCCCCcCcCCCCCcccccccCcc---------CCCCCCCCCCCCCCcCC
Confidence 999999999999999999999999999999999999999999999998876431 34789998899999999
Q ss_pred CCCCCCCCCccCCCCCCCCCCCCccCCCC
Q psy12394 194 NCHQRVAGYYRPYGKHLNETDVCQPCQCA 222 (1873)
Q Consensus 194 ~Ce~C~~g~~~~~~~~~~~~~~C~~C~C~ 222 (1873)
+||+|++||||.. ..+.|+||.=+
T Consensus 347 ~Ce~C~~Gyyg~~-----~~~~C~pCaA~ 370 (375)
T 4aqt_A 347 KCERCRENFFRLG-----NTEACSPAAAH 370 (375)
T ss_dssp TSCEECSSEECCT-----TCSSCEEC---
T ss_pred CCCCCCcCcccCc-----CCCCCcCCcCc
Confidence 9999999999974 34678888643
No 4
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=100.00 E-value=1.2e-37 Score=377.09 Aligned_cols=199 Identities=30% Similarity=0.606 Sum_probs=122.9
Q ss_pred CCCCCCceEEEeeccCC---------------------------------------------------eEEEc------c
Q psy12394 3 NSPRPAVWALERSADNG---------------------------------------------------ITISL------L 25 (1873)
Q Consensus 3 ~sprp~~~~~ers~d~g---------------------------------------------------i~~s~------~ 25 (1873)
+||||++||||||+|+| |+|++ +
T Consensus 153 ~spRP~am~ierS~D~G~tW~p~qYfA~dC~~~Fg~~~~~~~~~~~~~~~~viCt~~yS~~~P~~~GeV~f~~~~~f~~~ 232 (426)
T 3zyj_B 153 ESGRPDQMILEKSLDYGRTWQPYQYYATDCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYTTNSKIIHFEIKDRFAFF 232 (426)
T ss_dssp SSCCCSEEEEEEESSTTSSCEEEEEEESSHHHHTSCCCCCGGGCCSSCSSCCCEECTTTCSSSTTTTEEEECSHHHHHHH
T ss_pred CCCCCCeEEEEeccCCCCCceehHHHhhhhHHhcCCCcccccccCCCCCCcceeCCCCCCCCCCCCCEEEEEeccccccc
Confidence 79999999999999987 78775 4
Q ss_pred CCCCCCCCC-------CCchhhhhheeeeeeeEeeccccccccccccccCCCCCcceeeeEEeeeeeeeeeeccCCCCCc
Q psy12394 26 DHRPSMKNF-------FNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIKDISIGGRCRCNGHADV 98 (1873)
Q Consensus 26 ~~rp~~~~~-------~~s~~l~~~~~at~ir~~~~~~~t~~~~~~~~~~~~~~~~~~~yYai~d~~v~grC~C~gHa~~ 98 (1873)
+| |++.+| ++|++||||++||||||||+|++|++. | .|+.++++|||||+||.|+|||.|||||+.
T Consensus 233 ~g-P~~~~~~~~y~~~~~S~~Lqd~~taT~iRi~l~r~~t~~~--~----~~~~~~~~yyYAI~d~~v~g~C~CnGHas~ 305 (426)
T 3zyj_B 233 AG-PRLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEI--F----VDELHLARYFYAISDIKVRGRCKCNLHATV 305 (426)
T ss_dssp HC-SSCCCHHHHHHHHHHCHHHHHHSEEEEEEEEEEECCCSSS--S----CCSSCGGGCCCEEEEEECEEEECCSSSCSC
T ss_pred cC-CCcccccccccccccCHHHHhhhcceeEEEEEeccccCCc--c----ccccccceecceeecccccccCcCCCchhh
Confidence 56 998874 579999999999999999999998642 2 457889999999999999999999999999
Q ss_pred CccCCCCCCccceeecCCCCCCCCCCCCCCCccCCcCCcCCC-----CCCCCccCCCCCCCCCccccCccccccCccccc
Q psy12394 99 CDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQS-----NKPFSCEPCNCHGHADKCVYDPMVDEKRLSVDI 173 (1873)
Q Consensus 99 C~~~~~~~~~~~~C~C~h~t~G~~Ce~c~p~~~~~p~~~~~~-----~~~~~C~~C~C~~~~~~C~~d~~~~~~~~s~~~ 173 (1873)
|++.. +.++|+|+|||+|++||+|.|+|+++||++|+. ..+++|++|+|++|+..|. +.
T Consensus 306 C~~~~----g~~~C~C~~~ttG~~CE~C~pgy~~~P~~~gt~~p~~~g~~~~C~pC~Cn~~g~~CD--~~---------- 369 (426)
T 3zyj_B 306 CVYDN----SKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCD--NE---------- 369 (426)
T ss_dssp EEEET----TEEEECCCTTEESSSSCEECTTCCSSCCCCCBCCSSSSCBCCCCCCCCC----------------------
T ss_pred cCCCC----CCceeeCCCCCcCCCccccccccccCcccCCcccccCCCCCCcccCCCCCCCcCccc--cC----------
Confidence 97642 458999999999999999999999999999863 6789999999999998883 32
Q ss_pred CcCcCCCceeCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCccCCCCCCCCCCeeecCCCceecCCCC
Q psy12394 174 QGNYEGGGVCQECRDNTEGINCHQRVAGYYRPYGKHLNETDVCQPCQCAFHYATGNCAEGTGKCECRPEY 243 (1873)
Q Consensus 174 ~g~~~~GG~C~~C~~~~~G~~Ce~C~~g~~~~~~~~~~~~~~C~~C~C~~~~n~g~C~~~~g~C~C~~G~ 243 (1873)
.++|+|||+| .++. .| +|++||+|.. |..|.|+ ++|+|++.+|+|.=+.|.
T Consensus 370 t~~C~ngg~C---~~~~---~C-~C~~G~~G~~---------Ce~c~C~---~~g~C~~~~Gqc~~~~~~ 420 (426)
T 3zyj_B 370 LLHCQNGGTC---HNNV---RC-LCPAAYTGIL---------CEKLRCE---EAGSCGSDSGQGAPPHGT 420 (426)
T ss_dssp ----------------------------------------------------------------------
T ss_pred cccCCCCCCc---CCCC---CC-cCCCCCcCCC---------CcCCCCC---CCCcccCCCCccCCCCCc
Confidence 2689999998 3444 89 8999999853 7778888 789999999998766654
No 5
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI, LE-domain, N neuronal cell adhesion molecule, netrin G ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens} PDB: 3zyg_A* 3zyi_B*
Probab=99.95 E-value=1.1e-29 Score=298.00 Aligned_cols=128 Identities=34% Similarity=0.718 Sum_probs=107.6
Q ss_pred CCCCCCCceEEEeeccCC----------------------------------------------------eEEEccCCC-
Q psy12394 2 GNSPRPAVWALERSADNG----------------------------------------------------ITISLLDHR- 28 (1873)
Q Consensus 2 ~~sprp~~~~~ers~d~g----------------------------------------------------i~~s~~~~r- 28 (1873)
.+||||++||||||+|+| |+|++ ++|
T Consensus 124 F~spRP~sm~ierS~D~G~tW~P~QYfA~dC~~~Fg~~~~~~~~~~~~~~~eviCt~~yS~~~P~~~gg~v~f~v-~~r~ 202 (338)
T 3tbd_A 124 FEYGRPTVMVLEKSLDNGRTWQPYQFYAEDCMEAFGMSARRARDMSSSSAHRVLCTEEYSRWAGSKKEKHVRFEV-RDRF 202 (338)
T ss_dssp ESSCCCSEEEEEEESSTTSSCEEEEEEESSHHHHHSCCBCCGGGCCGGGTTCCCEECTTTTTTTSSCCCEEEECS-HHHH
T ss_pred cCCCCCCeEEEEeccCCCCCceeehhhhhhhHHhcCCCCccccCccCCCCCccEECCCCCCCCCCCCCceEEEEe-cccc
Confidence 369999999999999988 44443 222
Q ss_pred -----CCCCCC-------CCchhhhhheeeeeeeEeeccccccccccccccCCCCCcceeeeEEeeeeeeeeeeccCCCC
Q psy12394 29 -----PSMKNF-------FNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIKDISIGGRCRCNGHA 96 (1873)
Q Consensus 29 -----p~~~~~-------~~s~~l~~~~~at~ir~~~~~~~t~~~~~~~~~~~~~~~~~~~yYai~d~~v~grC~C~gHa 96 (1873)
|++.+| ++|++||||++||||||||+|++++ +.+. +..++++|||||+||+|+|||+|||||
T Consensus 203 ~~~~gP~~~~~~~~y~~~~~s~~Lqd~~taT~iRi~l~r~~~~-~~~~-----~~~~~~~yyYAI~di~v~G~C~CnGHA 276 (338)
T 3tbd_A 203 AIFAGPDLRNMDNLYTRLESAKGLKEFFTLTDLRMRLLRPALG-GTYV-----QRENLYKYFYAISNIEVIGRCKCNLHA 276 (338)
T ss_dssp HHHHTTTTCCHHHHHHHHHHSTTHHHHTEEEEEEEEEEECCCT-TSCC-----CTTCGGGCCCEEEEEECEEEECCTTBC
T ss_pred cccCCCccccccccccccccCHHHHHhhhheeeeeEeeccccC-cccc-----cccccceeEEEeecceeeccccccCCc
Confidence 777764 4589999999999999999999854 3221 234569999999999999999999999
Q ss_pred CcCccCCCCCCccceeecCCCCCCCCCCCCCCCccCCcCCcCCC
Q psy12394 97 DVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQS 140 (1873)
Q Consensus 97 ~~C~~~~~~~~~~~~C~C~h~t~G~~Ce~c~p~~~~~p~~~~~~ 140 (1873)
++|++. .+.++|.|+|||+|++||+|+|+|+++||++|+.
T Consensus 277 ~~C~~~----~g~~~C~C~HnT~G~~Ce~C~p~y~~~pw~pg~~ 316 (338)
T 3tbd_A 277 NLCSMR----EGSLQCECEHNTTGPDCGKCKKNFRTRSWRAGSY 316 (338)
T ss_dssp SCEEEE----TTEEEECCCTTEESTTSCEECTTCBSSCCCCCBC
T ss_pred CccCCC----CCCceecCCCCCCCCCCcccCccccCCCCCCCCc
Confidence 999864 2567899999999999999999999999999975
No 6
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A
Probab=99.85 E-value=5.4e-22 Score=215.13 Aligned_cols=141 Identities=33% Similarity=0.800 Sum_probs=121.6
Q ss_pred CCCCCCccccCCC----ceE-EecCCccCCCCCcCCCCCcCCCCC-----CCCccccCCCCCCCC-CCcccCCCcee-ec
Q psy12394 1247 CNCPFTAVCDSYT----GEC-ICAARVIGKKCDQCEPNTFGYDPI-----IGCEECNCHPHGVNG-TQQCDLFDGSC-SC 1314 (1873)
Q Consensus 1247 C~C~~~~~C~~~t----g~C-~C~~~~~G~~C~~C~~g~~g~~~~-----~~C~~C~C~~~gs~~-~~~C~~~~G~C-~C 1314 (1873)
|+|+++++|+..+ ++| .|+++|+|++||+|+++||+.+.. ..|++|+|+.+++.. ...|++.+|+| .|
T Consensus 1 C~C~~~g~C~~~~~~g~~~C~~C~~g~~G~~Ce~C~~g~~g~~~~~~~~~~~C~~C~C~~~~~~~~~~~C~~~tG~C~~C 80 (162)
T 1klo_A 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKC 80 (162)
T ss_dssp CCSCTTCCEEECSSSCCEEECSCCTTEESTTSCEECTTEEEETTCTTSSCEEEEECCSTTCBCTTCSCCBCTTTCCBCCB
T ss_pred CcCcCcCcccccCCCCCEEeCCCCCCCcCCCCcCCCCCCcCCcccccCCCCCCeeCcCCCCCCcccCCcccCCCCcccCC
Confidence 6799999998765 589 599999999999999999995432 359999999886421 24799999999 59
Q ss_pred cCCcccCCCcccCCCcccCC-------CCCCccccCCCcccc--ccCCCCceeeccCccccCCCCcCCCCccccCCCCCC
Q psy12394 1315 KENIVGRTCDHCVEGHWSFP-------YCVPCECDLRGTTID--ICNQGTAECYCKKNVYGAACDVCKEGTFDIQADNVD 1385 (1873)
Q Consensus 1315 ~~~~~G~~C~~C~~G~~g~p-------~C~~C~C~~~gs~~~--~Cd~~~G~C~C~~~~~G~~Cd~C~~g~~g~~~~~~~ 1385 (1873)
+++|+|++||+|++||||++ .|++|+|++.|+... .||+.+|+|.||++|+|++||+|++|||+++. ..
T Consensus 81 ~~g~~G~~Ce~C~~Gy~g~~~~~~~~~~C~~C~C~~~Gs~~~~~~Cd~~tG~C~C~~g~~G~~Cd~C~~g~~g~~~--~~ 158 (162)
T 1klo_A 81 IYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQS--GQ 158 (162)
T ss_dssp CTTEETTTTCEECTTEEECTTCSSGGGSEEECCCCTTTBGGGCCCCCTTTCCCCBCTTEESTTCCEECTTCBCGGG--SS
T ss_pred CCCCcCCCcCcCchhhcCCccccCCCCCCeeccCCCCCccCCCCCCCCCCCEeECCCCCcCCCCCCCCCCcccCCC--CC
Confidence 99999999999999999986 478999999998755 89999999999999999999999999999875 24
Q ss_pred CCcc
Q psy12394 1386 GCTR 1389 (1873)
Q Consensus 1386 gC~~ 1389 (1873)
||++
T Consensus 159 GC~~ 162 (162)
T 1klo_A 159 GCER 162 (162)
T ss_dssp CCBC
T ss_pred CcCC
Confidence 6653
No 7
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}
Probab=99.79 E-value=9.6e-20 Score=234.36 Aligned_cols=225 Identities=33% Similarity=0.788 Sum_probs=129.6
Q ss_pred CcccCCCCccCCCCCCCCCCcCCCCCCccCCCCCCCCCCcccCC---CcceecCCCCCCCCCcccCCCccCCCCcccCCC
Q psy12394 617 GKCPCLVNFGGKTCSQCSPGFYQYPQCKACNCDSHGNIGVSCDD---DGKCQCEKNFGGDRCERCKEGLYNFPICEACNC 693 (1873)
Q Consensus 617 g~C~C~~G~~G~~Ce~C~~g~~g~~~C~~c~C~~~~~~gg~C~~---~g~C~C~~g~~G~~Ce~C~~g~~g~~~C~~C~C 693 (1873)
++|.|++||+|.+||+|.++|++.+. .+ ++|.. ...|.|.. .+..|+. ....+....
T Consensus 279 g~C~C~~G~~G~~Ce~C~~g~~~~p~------~~-----~~c~~~~~~~~C~C~~--~~~~C~~------d~~~c~~~~- 338 (525)
T 4aqs_A 279 GHCMCRHNTKGLNCELCMDFYHDLPW------RP-----AEGRNSNACKKCNCNE--HSSSCHF------DMAVFLATG- 338 (525)
T ss_dssp CEECCCTTEESSSSCEECTTCCSSCC------CC-----CBTTBCCCCCCCCCTT--SCSEEEE------CHHHHHHTT-
T ss_pred ccccCcCCCcCCCCcCCCCccCCCcc------CC-----CcccCCCcccccccCC--CCCCCCC------CcccccccC-
Confidence 78999999999999999998887432 11 22322 23444532 2333332 000010001
Q ss_pred CCCCCCCcccCCCCce-eeCCCcccCCCCcCCCCCccCCC--------CcCCCCCCCCCccCcccccc------CCCCCc
Q psy12394 694 DSHGNIGVSCDDDGKC-QCEKNFGGDRCERCKEGLYNFPI--------CEECNCNPEGVLKTFAGCGS------LPAGEL 758 (1873)
Q Consensus 694 ~~~g~~~~~C~~~g~C-~C~~g~~G~~Ce~C~~g~~g~p~--------C~~C~C~~~Gs~~~~~~C~~------~~~~g~ 758 (1873)
+...+.| .|.+||+|.+|+.|.++|++.+. +.+|.|...+.... ..|.. ....+.
T Consensus 339 ---------~~~gg~C~~C~~g~~G~~Ce~C~~g~~~~~~~~~~~~~~~~~C~C~~~~~~~~-~~C~~~~~~~~~~~~~~ 408 (525)
T 4aqs_A 339 ---------NVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENG-GICDGYTDFSVGLIAGQ 408 (525)
T ss_dssp ---------SSCCEEEESCCTTEESTTSCEECTTEEECSSSCTTCTTCEEECCCCTTTBSGG-GCCCCSCBGGGTBCSSC
T ss_pred ---------ccCCCcccCCCCCCCCCCcccccCcccccCCCCCCCCCCCcCCCCCCCCCCCC-ccccCCCCCCcCCCCCc
Confidence 1124455 69999999999999999998762 34566665443221 11222 223578
Q ss_pred eecCCCcccCCccccCCCCcCCCCCCCCCCCcCcCCCCCcccCCcccCCCCCceecCCCCccCCCCCCCCCCccCcCCCC
Q psy12394 759 CECKPKVQGRICDECRPLYWNLKASNPDGCEDCDCYTLGTIGGIKNCNPKSGQCVCKATAMNRKCDACMDGTYALQDNNL 838 (1873)
Q Consensus 759 C~C~~g~~G~~C~~C~~g~~g~~~~~~~~C~~c~C~~~Gt~~~~~~C~~~tg~C~C~~g~~G~~C~~C~~g~~g~~~~~~ 838 (1873)
|.|+++|.|.+|++|++||+|..+.++.+|.+|+|++.|++.+.+.|+..+|+|.|++||+|.+|++|++||||+. .+.
T Consensus 409 C~C~~g~~G~~C~~C~~Gy~G~~c~~~~~C~~C~C~~~gtc~~~~~Cd~~tg~C~C~~g~~G~~Ce~C~~G~~g~~-~~~ 487 (525)
T 4aqs_A 409 CRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLS-NDL 487 (525)
T ss_dssp CCBCTTEETTTTCEECTTEECCCTTSTTSSEECCCCTTTBCCSSCCBCTTTCCBCBCTTCCSTTTCC-------------
T ss_pred cCCCCCCCCCcccCCCCCCcCCCCCCCCCCccCCCCCCceecCCCcccCCCCEEECCCCCcCCCcccCCCCccCCC-CCC
Confidence 9999999999999999999999999999999999999999998899999999999999999999999999999987 467
Q ss_pred CCCccCcCCCCCcccccccCCCCCCCCCccccccCC
Q psy12394 839 FGCTECACDIGGSINNLCNKDLSALNSEELPLLNKD 874 (1873)
Q Consensus 839 ~gC~~C~C~~gg~~~~~C~~~~~~~~~~~~~~~~~~ 874 (1873)
.+|++|.|+.+|+....|+..++++ ...+.+.|+
T Consensus 488 ~~C~~C~C~~~gs~~~~C~~~tG~C--~C~~G~~G~ 521 (525)
T 4aqs_A 488 DGCRPCDCDLGGALNNSCSEDSGQC--SCLPHMIGR 521 (525)
T ss_dssp ------------------------------------
T ss_pred CCCcCCCCCCCCccCCccCCCCCee--ECCCCCcCC
Confidence 8999999999999988898887765 344445444
No 8
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A
Probab=99.79 E-value=2.7e-20 Score=201.83 Aligned_cols=145 Identities=33% Similarity=0.837 Sum_probs=121.5
Q ss_pred CCCCCCCCCCcccCC-----CCce-eeCCCcccCCCCcCCCCCccCC--------CCcCCCCCCCCCccCccccccCCCC
Q psy12394 691 CNCDSHGNIGVSCDD-----DGKC-QCEKNFGGDRCERCKEGLYNFP--------ICEECNCNPEGVLKTFAGCGSLPAG 756 (1873)
Q Consensus 691 C~C~~~g~~~~~C~~-----~g~C-~C~~g~~G~~Ce~C~~g~~g~p--------~C~~C~C~~~Gs~~~~~~C~~~~~~ 756 (1873)
|+|.+ +++|+. .++| .|++||+|.+||+|+++||++| .|++|.|++.++....+.|+.. +
T Consensus 1 C~C~~----~g~C~~~~~~g~~~C~~C~~g~~G~~Ce~C~~g~~g~~~~~~~~~~~C~~C~C~~~~~~~~~~~C~~~--t 74 (162)
T 1klo_A 1 CPCPG----GSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRL--T 74 (162)
T ss_dssp CCSCT----TCCEEECSSSCCEEECSCCTTEESTTSCEECTTEEEETTCTTSSCEEEEECCSTTCBCTTCSCCBCTT--T
T ss_pred CcCcC----cCcccccCCCCCEEeCCCCCCCcCCCCcCCCCCCcCCcccccCCCCCCeeCcCCCCCCcccCCcccCC--C
Confidence 46766 456653 3689 7999999999999999999976 4789999988765444557654 4
Q ss_pred Ccee-cCCCcccCCccccCCCCcCCCCC--CCCCCCcCcCCCCCcccCCcccCCCCCceecCCCCccCCCCCCCCCCccC
Q psy12394 757 ELCE-CKPKVQGRICDECRPLYWNLKAS--NPDGCEDCDCYTLGTIGGIKNCNPKSGQCVCKATAMNRKCDACMDGTYAL 833 (1873)
Q Consensus 757 g~C~-C~~g~~G~~C~~C~~g~~g~~~~--~~~~C~~c~C~~~Gt~~~~~~C~~~tg~C~C~~g~~G~~C~~C~~g~~g~ 833 (1873)
++|. |+++|+|.+|++|++||||..+. ....|++|.|++.|+.+..+.|++.+|+|.|+++|+|++||+|+++|||+
T Consensus 75 G~C~~C~~g~~G~~Ce~C~~Gy~g~~~~~~~~~~C~~C~C~~~Gs~~~~~~Cd~~tG~C~C~~g~~G~~Cd~C~~g~~g~ 154 (162)
T 1klo_A 75 GECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNL 154 (162)
T ss_dssp CCBCCBCTTEETTTTCEECTTEEECTTCSSGGGSEEECCCCTTTBGGGCCCCCTTTCCCCBCTTEESTTCCEECTTCBCG
T ss_pred CcccCCCCCCcCCCcCcCchhhcCCccccCCCCCCeeccCCCCCccCCCCCCCCCCCEeECCCCCcCCCCCCCCCCcccC
Confidence 8995 99999999999999999998775 33679999999999887667899999999999999999999999999999
Q ss_pred cCCCCCCCcc
Q psy12394 834 QDNNLFGCTE 843 (1873)
Q Consensus 834 ~~~~~~gC~~ 843 (1873)
+.. .||++
T Consensus 155 ~~~--~GC~~ 162 (162)
T 1klo_A 155 QSG--QGCER 162 (162)
T ss_dssp GGS--SCCBC
T ss_pred CCC--CCcCC
Confidence 753 46653
No 9
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Probab=99.58 E-value=2.6e-15 Score=186.49 Aligned_cols=140 Identities=26% Similarity=0.727 Sum_probs=108.3
Q ss_pred CCCeeecCCCceecCCCCcCCCCcc-cCCcccCCCCCC-CCCCCCCCCCCceecCCCCCcccCCCCCccCCCcc-CCCCC
Q psy12394 226 ATGNCAEGTGKCECRPEYTKPDCNS-CAFGYFGYPNCE-PCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDT-CAQGY 302 (1873)
Q Consensus 226 n~g~C~~~~g~C~C~~G~~G~~Ce~-C~~g~~g~~~C~-~c~C~~~gt~~~~C~~~~G~~C~C~~g~~G~~Ce~-C~~Gf 302 (1873)
++|+|.+.+|+|.|++||+|.+|+. |.++|++.. |. +|.+.+...+++.|+..+ |+|.|++||+|.+|+. |.+||
T Consensus 207 ~~G~C~~~~g~C~C~~G~~G~~Ce~~C~~g~~g~~-C~~~C~~~~~C~~~g~C~~~~-~~C~C~~G~~G~~C~~~C~~G~ 284 (423)
T 2gy5_A 207 NNGVCHEDTGECICPPGFMGRTCEKACELHTFGRT-CKERCSGQEGCKSYVFCLPDP-YGCSCATGWKGLQCNEACHPGF 284 (423)
T ss_dssp TTCEECTTTCCEECCTTEESTTSCEECCTTEESTT-SCEECCSTTTTTTCCEEETTT-TEEECCBTCBSGGGCBCCCTTB
T ss_pred CCCEEECCCCcEeCCCCccCCCcccccCCCCCCCC-cCccCCCCCCCCCCCEECCCC-CeEEeCCCcccccccCccCCCC
Confidence 8999999899999999999999996 999999863 44 344433344456787544 4999999999999996 99999
Q ss_pred CCCCCCC-CCCcCCCCCCCCcccCCCcccccCCCcccCCCccCCCCCcCCCCCCcCCCCCCCCCceecCCCCeeeeCCCc
Q psy12394 303 YNFPTCS-PCECNAVGSLSDLCEVDSGNCTCRNNFAGRTCDSCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCECRPEY 381 (1873)
Q Consensus 303 ~g~~~C~-~c~C~~~gs~~~~C~~~~g~C~C~~G~~G~~Ce~C~~G~~g~~~C~~C~c~~c~n~g~C~~~~g~C~C~~G~ 381 (1873)
+| +.|+ +|+|.++| +|+...+ |.|++||+|.+|+++..-... .........|.|.+||
T Consensus 285 ~G-~~C~~~C~C~ngg----~C~~~~~-C~C~~G~~G~~Ce~~~~~~~~---------------~~~~~~~~~~~c~~g~ 343 (423)
T 2gy5_A 285 YG-PDCKLRCSCNNGE----MCDRFQG-CLCSPGWQGLQCEREGIPRMT---------------PKIVDLPDHIEVNSGK 343 (423)
T ss_dssp CS-BTTCCBCCCTTCC----EEETTTE-EECCTTCBSTTSCBCSSCCCC---------------CEECSCCSBCCEESEE
T ss_pred cC-CcccccccCCCCC----EecCCCc-eECCCCCcCCCCccCccCCcC---------------cceecCCCeEEeCCCc
Confidence 99 8887 67898854 6776555 999999999999985321111 1122345678999999
Q ss_pred cCCCCcc
Q psy12394 382 TKPDCNS 388 (1873)
Q Consensus 382 tG~~Ce~ 388 (1873)
.|..|+.
T Consensus 344 ~g~~C~~ 350 (423)
T 2gy5_A 344 FNPICKA 350 (423)
T ss_dssp ECCEEEE
T ss_pred cCCcccc
Confidence 9988874
No 10
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Probab=99.57 E-value=3.6e-15 Score=185.26 Aligned_cols=143 Identities=27% Similarity=0.692 Sum_probs=110.7
Q ss_pred eecccCceecCCCCcccCCCCC-CCCCccCCCCCc-CCC----CCCCccccCCCceEEecCCccCCCCCc-CCCCCcCCC
Q psy12394 1212 ECEQFGGQCQCKPNVIGRRCEM-CATGYYGFPDCH-PCN----CPFTAVCDSYTGECICAARVIGKKCDQ-CEPNTFGYD 1284 (1873)
Q Consensus 1212 ~c~~~~~~C~C~~~~~G~~C~~-C~~g~~~~~~C~-~C~----C~~~~~C~~~tg~C~C~~~~~G~~C~~-C~~g~~g~~ 1284 (1873)
.|+..+++|.|++||.|.+|+. |.++||+.+ |. +|. |.+++.|++.+++|.|+++|.|.+|+. |.+||+|.
T Consensus 210 ~C~~~~g~C~C~~G~~G~~Ce~~C~~g~~g~~-C~~~C~~~~~C~~~g~C~~~~~~C~C~~G~~G~~C~~~C~~G~~G~- 287 (423)
T 2gy5_A 210 VCHEDTGECICPPGFMGRTCEKACELHTFGRT-CKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGP- 287 (423)
T ss_dssp EECTTTCCEECCTTEESTTSCEECCTTEESTT-SCEECCSTTTTTTCCEEETTTTEEECCBTCBSGGGCBCCCTTBCSB-
T ss_pred EEECCCCcEeCCCCccCCCcccccCCCCCCCC-cCccCCCCCCCCCCCEECCCCCeEEeCCCcccccccCccCCCCcCC-
Confidence 6888789999999999999996 999999974 43 454 555678988999999999999999996 99999994
Q ss_pred CCCCCc-cccCCCCCCCCCCcccCCCceeeccCCcccCCCccc------------------CCCcccCCCCCCccccCCC
Q psy12394 1285 PIIGCE-ECNCHPHGVNGTQQCDLFDGSCSCKENIVGRTCDHC------------------VEGHWSFPYCVPCECDLRG 1345 (1873)
Q Consensus 1285 ~~~~C~-~C~C~~~gs~~~~~C~~~~G~C~C~~~~~G~~C~~C------------------~~G~~g~p~C~~C~C~~~g 1345 (1873)
.|. +|.|+..| .|+..++ |.|++||+|++||++ .+|||| |.|..+.|+...
T Consensus 288 ---~C~~~C~C~ngg-----~C~~~~~-C~C~~G~~G~~Ce~~~~~~~~~~~~~~~~~~~c~~g~~g-~~C~~~~~~~~~ 357 (423)
T 2gy5_A 288 ---DCKLRCSCNNGE-----MCDRFQG-CLCSPGWQGLQCEREGIPRMTPKIVDLPDHIEVNSGKFN-PICKASGWPLPT 357 (423)
T ss_dssp ---TTCCBCCCTTCC-----EEETTTE-EECCTTCBSTTSCBCSSCCCCCEECSCCSBCCEESEEEC-CEEEEECTTCCC
T ss_pred ---cccccccCCCCC-----EecCCCc-eECCCCCcCCCCccCccCCcCcceecCCCeEEeCCCccC-CcccccCCcCCC
Confidence 454 67887644 7988777 999999999999987 456676 667666664322
Q ss_pred ccccccCCCCceeeccCcccc
Q psy12394 1346 TTIDICNQGTAECYCKKNVYG 1366 (1873)
Q Consensus 1346 s~~~~Cd~~~G~C~C~~~~~G 1366 (1873)
......+..+|+|+++.++.+
T Consensus 358 ~~~~~~~~~~G~cl~~~~~~~ 378 (423)
T 2gy5_A 358 NEEMTLVKPDGTVLHPKDFNH 378 (423)
T ss_dssp GGGEEEECTTSCEECCSEEEE
T ss_pred CceEEEECCCeEEEeCCCcCc
Confidence 222222445677777766554
No 11
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Probab=99.56 E-value=2.1e-15 Score=181.30 Aligned_cols=153 Identities=31% Similarity=0.822 Sum_probs=68.0
Q ss_pred CCCeeecCCCceecCCCCcCCCCcccCCcccCCCCCCCCCCCCCCCCCceecCCCCCcccCCCCCccCCCccCCCCCCCC
Q psy12394 226 ATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNF 305 (1873)
Q Consensus 226 n~g~C~~~~g~C~C~~G~~G~~Ce~C~~g~~g~~~C~~c~C~~~gt~~~~C~~~~G~~C~C~~g~~G~~Ce~C~~Gf~g~ 305 (1873)
|+|+|.+ .++|.|++||+|.+|+. +.|.+ +|.++ +.|.. .+ .|.|++||+|.+|+.
T Consensus 157 ~~G~C~~-~~~C~C~~G~~G~~C~~--------~~C~~-~C~~~----G~C~~-~~-~C~C~~G~~G~~C~~-------- 212 (324)
T 2ygq_A 157 NGGFCNE-RRICECPDGFHGPHCEK--------ALCTP-RCMNG----GLCVT-PG-FCICPPGFYGVNCDK-------- 212 (324)
T ss_dssp SSCEECT-TSCEECCTTEESSSSCE--------ESSSS-CCCTT----CEECS-SC-CEECCTTCBTTTTCB--------
T ss_pred CCCEECC-CCeEECCCCCcCCCCCC--------CCCCC-CCCCC----CEEcC-CC-EEeCCCCccCCCccc--------
Confidence 8999986 68999999999999986 23442 57644 46865 34 999999999999986
Q ss_pred CCCCCCCcCCCCCCCCcccCCCcccccCCCcccCCCccCCCCCcCCCCCCcCCCCCCCCCceecCCCCeeeeCCCccCCC
Q psy12394 306 PTCSPCECNAVGSLSDLCEVDSGNCTCRNNFAGRTCDSCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCECRPEYTKPD 385 (1873)
Q Consensus 306 ~~C~~c~C~~~gs~~~~C~~~~g~C~C~~G~~G~~Ce~C~~G~~g~~~C~~C~c~~c~n~g~C~~~~g~C~C~~G~tG~~ 385 (1873)
+.|. .+|.++| +|.. +++|.|++||+|..|+. ..|. .+|.++|+|.. .++|.|++||+|..
T Consensus 213 ~~C~-~~C~~~G----~C~~-~~~C~C~~G~~G~~C~~--------~~C~----~~C~~~g~C~~-~~~C~C~~G~~G~~ 273 (324)
T 2ygq_A 213 ANCS-TTCFNGG----TCFY-PGKCICPPGLEGEQCEI--------SKCP----QPCRNGGKCIG-KSKCKCSKGYQGDL 273 (324)
T ss_dssp CCCS-SCCCSSC----CBSC-SSCBCCCTTCCTTTTC-------------------------------------------
T ss_pred CcCC-CCCCCCC----eeCC-CCeeeCCCCccCCCCCc--------CcCC----CcCCCCCEECC-CCEEECCCCCcCCC
Confidence 4464 4677754 5543 58999999999999985 2343 57889999974 58999999999999
Q ss_pred CccCCCCccCCCCCCCCCCCCCcEeeeeccCCCCCeeeCCCCcccCCCCcC
Q psy12394 386 CNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTC 436 (1873)
Q Consensus 386 Ce~C~~g~~~~~~C~~~~C~n~gtc~~~cd~~~g~~C~C~~g~~G~~Ce~C 436 (1873)
|+. +.|. .+|.++|+|. . .+.|.|++||+|.+|+..
T Consensus 274 C~~--------~~C~-~~C~~~g~C~----~--~~~C~C~~G~~G~~C~~~ 309 (324)
T 2ygq_A 274 CSK--------PVCE-PGCGAHGTCH----E--PNKCQCQEGWHGRHCNKR 309 (324)
T ss_dssp ---------------------------------------------------
T ss_pred CcC--------CCCC-CCCCCCCEEC----C--CCEeECCCCCcCCCCCCC
Confidence 983 3454 4799999963 2 469999999999999853
No 12
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Probab=99.53 E-value=5.4e-15 Score=177.78 Aligned_cols=155 Identities=32% Similarity=0.860 Sum_probs=69.6
Q ss_pred ccccccCCCceecCCCCCCCCCCccCCCCccCCCCCcccCCCCCCcCCccCCCCCcccCCCCccCCCCCCCCCCcCCCCC
Q psy12394 563 EAGICDKTNGSCLCKEGYTGARCDQCKAGYYGYPDCKLCGCSAVGSSSTACDVSGKCPCLVNFGGKTCSQCSPGFYQYPQ 642 (1873)
Q Consensus 563 ~~~~C~~~~g~C~C~~G~~G~~Ce~C~~g~~~~~~C~~c~C~~~Gt~~~~C~~~g~C~C~~G~~G~~Ce~C~~g~~g~~~ 642 (1873)
..+.|+. .++|.|++||+|..|+. ..|.+ +|.++| +|...++|.|++||+|.+|+. +.
T Consensus 157 ~~G~C~~-~~~C~C~~G~~G~~C~~--------~~C~~-~C~~~G----~C~~~~~C~C~~G~~G~~C~~--------~~ 214 (324)
T 2ygq_A 157 NGGFCNE-RRICECPDGFHGPHCEK--------ALCTP-RCMNGG----LCVTPGFCICPPGFYGVNCDK--------AN 214 (324)
T ss_dssp SSCEECT-TSCEECCTTEESSSSCE--------ESSSS-CCCTTC----EECSSCCEECCTTCBTTTTCB--------CC
T ss_pred CCCEECC-CCeEECCCCCcCCCCCC--------CCCCC-CCCCCC----EEcCCCEEeCCCCccCCCccc--------Cc
Confidence 3456765 68999999999999986 12332 688888 677779999999999999986 22
Q ss_pred CccCCCCCCCCCCcccCCCcceecCCCCCCCCCcccCCCccCCCCcccCCCCCCCCCCcccCCCCceeeCCCcccCCCCc
Q psy12394 643 CKACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCERCKEGLYNFPICEACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCER 722 (1873)
Q Consensus 643 C~~c~C~~~~~~gg~C~~~g~C~C~~g~~G~~Ce~C~~g~~g~~~C~~C~C~~~g~~~~~C~~~g~C~C~~g~~G~~Ce~ 722 (1873)
|. .+|.+ +|+|...++|.|++||+|.+|+. +.|. -+|.+ ++.|...++|.|++||+|..|+.
T Consensus 215 C~-~~C~~----~G~C~~~~~C~C~~G~~G~~C~~--------~~C~-~~C~~----~g~C~~~~~C~C~~G~~G~~C~~ 276 (324)
T 2ygq_A 215 CS-TTCFN----GGTCFYPGKCICPPGLEGEQCEI--------SKCP-QPCRN----GGKCIGKSKCKCSKGYQGDLCSK 276 (324)
T ss_dssp CS-SCCCS----SCCBSCSSCBCCCTTCCTTTTC----------------------------------------------
T ss_pred CC-CCCCC----CCeeCCCCeeeCCCCccCCCCCc--------CcCC-CcCCC----CCEECCCCEEECCCCCcCCCCcC
Confidence 32 35665 68998889999999999999985 1121 24554 56788789999999999999985
Q ss_pred CCCCCccCCCCcCCCCCCCCCccCccccccCCCCCceecCCCcccCCccccCC
Q psy12394 723 CKEGLYNFPICEECNCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDECRP 775 (1873)
Q Consensus 723 C~~g~~g~p~C~~C~C~~~Gs~~~~~~C~~~~~~g~C~C~~g~~G~~C~~C~~ 775 (1873)
+.|. ..|.++|+|. . .++|.|++||+|.+|++..+
T Consensus 277 --------~~C~-~~C~~~g~C~------~---~~~C~C~~G~~G~~C~~~~~ 311 (324)
T 2ygq_A 277 --------PVCE-PGCGAHGTCH------E---PNKCQCQEGWHGRHCNKRYE 311 (324)
T ss_dssp -----------------------------------------------------
T ss_pred --------CCCC-CCCCCCCEEC------C---CCEeECCCCCcCCCCCCCCc
Confidence 1232 1566677653 2 37899999999999987544
No 13
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}
Probab=99.52 E-value=2.7e-15 Score=182.02 Aligned_cols=108 Identities=42% Similarity=0.981 Sum_probs=87.7
Q ss_pred ccccccCCCCCCCCCccccCCCCCcCCCCCCCccccccccCCCCcCCCccccCccccCCCccccCCccccccCCCCCcCC
Q psy12394 1642 YEAQLPDCQHNTLGDQCEQCQPGYHGNATQGTMADCLICACPLPITSNNFASGCDVSEDGCHMNGTLNFYCEPTSGQQCP 1721 (1873)
Q Consensus 1642 ~g~c~~~C~~~t~G~~Ce~C~~gy~g~a~~g~~~~c~~c~c~~~~~~n~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~C~ 1721 (1873)
.+.| +|+|||.|.+||+|++||+|++++.. .. + +
T Consensus 285 ~g~C--~C~hnT~G~~CErC~pGy~g~p~~~a------------------------t~-~--------------~----- 318 (403)
T 2y38_A 285 RLQC--ACQHNTCGGSCDRCCPGFNQQPWKPA------------------------TT-D--------------S----- 318 (403)
T ss_dssp CEEE--CCCTTEESSSCCEECTTCCSSCCCCC------------------------CS-S--------------C-----
T ss_pred ceEe--ECcCcCcCCCCCCCCccccCCccccc------------------------cc-C--------------C-----
Confidence 3456 59999999999999999999986410 00 0 0
Q ss_pred CCCCCCCCCCcccccCCCCCCCCCccccChhhhcccccccccCccCCCeecCCCCCCCCCCCCcccCCCccccCCCCCCC
Q psy12394 1722 CKENYAGDHCDTCAQACNCHGHADKCVYDPMVDEKRLSVDIQGNYEGGGVCQECRDNTEGINCHQCVAGYYRPYGKHLNE 1801 (1873)
Q Consensus 1722 C~~gy~G~sCe~Ca~~c~c~g~~~~c~~~~~~~~~~~~c~~~~~~~~~g~c~~C~~nt~G~~C~~C~~g~~~~~~~~~~~ 1801 (1873)
...| .+|+||||++.|+||++++..+++-++++.+..+|+|++|+|||+|++||+|++||||++..+...
T Consensus 319 ------~~~C----~pC~Cnghs~~C~~d~~~~~~~~s~~~~~~~~~~G~C~~C~~nt~G~~CErC~~GYyg~p~~~~~~ 388 (403)
T 2y38_A 319 ------ANEC----QSCNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVCLDCQHHTTGINCERCLPGFFRAPDQPLDS 388 (403)
T ss_dssp ------CCCC----CCCCCTTSCSCEEECHHHHHTTCCCCTTSCSCCCEEESSCCSSEESTTSCEECTTCEECTTSCTTS
T ss_pred ------Cccc----cccccCCCCcccccCcccccccccccccccCCCCCCCCCCcCcCcCCCCCcCCCCccCCCCCCCCC
Confidence 0123 289999999999999999988777666677789999999999999999999999999888888877
Q ss_pred CCCc
Q psy12394 1802 TDVC 1805 (1873)
Q Consensus 1802 ~~~c 1805 (1873)
++.|
T Consensus 389 ~~~C 392 (403)
T 2y38_A 389 PHVC 392 (403)
T ss_dssp TTSE
T ss_pred CCcc
Confidence 7766
No 14
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A
Probab=99.47 E-value=1.9e-14 Score=157.42 Aligned_cols=149 Identities=25% Similarity=0.661 Sum_probs=106.2
Q ss_pred CCceecCCCCcCCCCcccCCcccCCCCCCC-CCCCCCCCCCceecCCCCCcccCCCCCccCCCccCCCCCCCCCCCCCCC
Q psy12394 234 TGKCECRPEYTKPDCNSCAFGYFGYPNCEP-CKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFPTCSPCE 312 (1873)
Q Consensus 234 ~g~C~C~~G~~G~~Ce~C~~g~~g~~~C~~-c~C~~~gt~~~~C~~~~G~~C~C~~g~~G~~Ce~C~~Gf~g~~~C~~c~ 312 (1873)
.++|.|++||+|..|+. .|.+ .+|. .++.|+. ++ +|.|++||+|..|+. +.|.. .
T Consensus 16 ~~~c~C~~g~~G~~C~~---------~C~~~~~c~----~~g~C~~-~g-~C~C~~G~~G~~C~~--------~~C~~-~ 71 (169)
T 2vj2_A 16 RSAVTCDDYYYGFGCNK---------FCRPRDDFF----GHYACDQ-NG-NKTCMEGWMGPECNR--------AICRQ-G 71 (169)
T ss_dssp -----CCTTEETTTTCE---------ECCCEEETT----EEEEECS-SC-CEEECTTEESTTSCE--------ECCCT-T
T ss_pred CeeeeCCCcCcCCCccc---------ccCCCCCcC----CCCEeCC-CC-eeECCCCCcCCCCCC--------CCCCC-C
Confidence 46899999999999985 1222 1344 3456864 56 999999999999986 33432 2
Q ss_pred cC-CCCCCCCcccCCCcccccCCCcccCCCccCCCCCcCCCCCCcCCCCC-CCCCceecCCCCeeeeCCCccCCCCccCC
Q psy12394 313 CN-AVGSLSDLCEVDSGNCTCRNNFAGRTCDSCADGYYNYPRCTSCQCAF-HYATGNCAEGTGKCECRPEYTKPDCNSCA 390 (1873)
Q Consensus 313 C~-~~gs~~~~C~~~~g~C~C~~G~~G~~Ce~C~~G~~g~~~C~~C~c~~-c~n~g~C~~~~g~C~C~~G~tG~~Ce~C~ 390 (1873)
|. . ++.|.. +++|.|++||+|..|++|.. .+ |.|+ +|. ..++|.|++||+|.+|+.
T Consensus 72 C~~~----~g~C~~-~~~C~C~~G~~G~~C~~C~~-------------~~~C~~g-~C~-~~~~C~C~~G~~G~~C~~-- 129 (169)
T 2vj2_A 72 CSPK----HGSCKL-PGDCRCQYGWQGLYCDKCIP-------------HPGCVHG-ICN-EPWQCLCETNWGGQLCDK-- 129 (169)
T ss_dssp CCTT----TEECSS-TTCCEECTTEESSSSCEECC-------------CTTCSSE-ECS-STTCCEECTTEETTTTCE--
T ss_pred CCCC----CcccCC-CCeeECCCCCCCCCcccCCC-------------CCCCCCC-CcC-CCCEEeCCCCCCCCcccC--
Confidence 32 2 234654 68999999999999987532 22 4444 887 578999999999999984
Q ss_pred CCccCCCCCCC-CCCCCCcEeeeeccCCCCCeeeCCCCcccCCCC
Q psy12394 391 FGYFGYPNCEP-CKCHMNGTLDFYCEPASGQQCPCKENYAGDHCD 434 (1873)
Q Consensus 391 ~g~~~~~~C~~-~~C~n~gtc~~~cd~~~g~~C~C~~g~~G~~Ce 434 (1873)
.++.|.. .+|.++|+|.. ....+|+|.|++||+|++||
T Consensus 130 ----~~~~C~~~~~C~~~g~C~~--~~~~~~~C~C~~G~~G~~Ce 168 (169)
T 2vj2_A 130 ----DLNYCGTHQPCLNGGTCSN--TGPDKYQCSCPEGYSGPNCE 168 (169)
T ss_dssp ----ESCHHHHTCCCCTTCEEEE--CSTTCEEEECCTTCCSTTSC
T ss_pred ----CCCCCCCCCCCCCCCEEcC--CCCCCcEeECCCCCcCcCcC
Confidence 3567764 79999999742 12456899999999999997
No 15
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A
Probab=99.40 E-value=7.7e-14 Score=152.54 Aligned_cols=151 Identities=27% Similarity=0.726 Sum_probs=106.4
Q ss_pred CceecCCCCCCCCCCcc-CCCCccCCCCCcccCCCCCCcCCccCCCCCcccCCCCccCCCCCCCCCCcCCCCCCccCCCC
Q psy12394 571 NGSCLCKEGYTGARCDQ-CKAGYYGYPDCKLCGCSAVGSSSTACDVSGKCPCLVNFGGKTCSQCSPGFYQYPQCKACNCD 649 (1873)
Q Consensus 571 ~g~C~C~~G~~G~~Ce~-C~~g~~~~~~C~~c~C~~~Gt~~~~C~~~g~C~C~~G~~G~~Ce~C~~g~~g~~~C~~c~C~ 649 (1873)
...|.|++||+|..|+. |.+ ...|.++| +|+.+++|.|++||+|..|+. +.|.. .|.
T Consensus 16 ~~~c~C~~g~~G~~C~~~C~~---------~~~c~~~g----~C~~~g~C~C~~G~~G~~C~~--------~~C~~-~C~ 73 (169)
T 2vj2_A 16 RSAVTCDDYYYGFGCNKFCRP---------RDDFFGHY----ACDQNGNKTCMEGWMGPECNR--------AICRQ-GCS 73 (169)
T ss_dssp -----CCTTEETTTTCEECCC---------EEETTEEE----EECSSCCEEECTTEESTTSCE--------ECCCT-TCC
T ss_pred CeeeeCCCcCcCCCcccccCC---------CCCcCCCC----EeCCCCeeECCCCCcCCCCCC--------CCCCC-CCC
Confidence 56899999999999985 432 12566776 677789999999999999985 11221 232
Q ss_pred CCCCCCcccCCCcceecCCCCCCCCCcccCCCccCCCCcccCCCCCCCCCCcccCCCCceeeCCCcccCCCCcCCCCCcc
Q psy12394 650 SHGNIGVSCDDDGKCQCEKNFGGDRCERCKEGLYNFPICEACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCERCKEGLYN 729 (1873)
Q Consensus 650 ~~~~~gg~C~~~g~C~C~~g~~G~~Ce~C~~g~~g~~~C~~C~C~~~g~~~~~C~~~g~C~C~~g~~G~~Ce~C~~g~~g 729 (1873)
. ..|+|.++++|.|++||+|.+|++|... + .|. .++|...++|.|++||+|.+|++-
T Consensus 74 ~---~~g~C~~~~~C~C~~G~~G~~C~~C~~~----~-----~C~-----~g~C~~~~~C~C~~G~~G~~C~~~------ 130 (169)
T 2vj2_A 74 P---KHGSCKLPGDCRCQYGWQGLYCDKCIPH----P-----GCV-----HGICNEPWQCLCETNWGGQLCDKD------ 130 (169)
T ss_dssp T---TTEECSSTTCCEECTTEESSSSCEECCC----T-----TCS-----SEECSSTTCCEECTTEETTTTCEE------
T ss_pred C---CCcccCCCCeeECCCCCCCCCcccCCCC----C-----CCC-----CCCcCCCCEEeCCCCCCCCcccCC------
Confidence 1 1367988899999999999999986542 1 133 237877899999999999999841
Q ss_pred CCCCcC-CCCCCCCCccCccccccC-CCCCceecCCCcccCCccc
Q psy12394 730 FPICEE-CNCNPEGVLKTFAGCGSL-PAGELCECKPKVQGRICDE 772 (1873)
Q Consensus 730 ~p~C~~-C~C~~~Gs~~~~~~C~~~-~~~g~C~C~~g~~G~~C~~ 772 (1873)
...|.. .+|.++|+ |... .++++|.|++||+|.+|++
T Consensus 131 ~~~C~~~~~C~~~g~------C~~~~~~~~~C~C~~G~~G~~Ce~ 169 (169)
T 2vj2_A 131 LNYCGTHQPCLNGGT------CSNTGPDKYQCSCPEGYSGPNCEI 169 (169)
T ss_dssp SCHHHHTCCCCTTCE------EEECSTTCEEEECCTTCCSTTSCC
T ss_pred CCCCCCCCCCCCCCE------EcCCCCCCcEeECCCCCcCcCcCC
Confidence 112322 36777776 4443 4679999999999999973
No 16
>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*
Probab=99.38 E-value=3.3e-16 Score=179.32 Aligned_cols=149 Identities=11% Similarity=0.001 Sum_probs=110.4
Q ss_pred CCCeeecC--CCceecCCCCcCCCCcccCCcccCCCC------CCCCCCCCCCCCCceecCCCCCcccCCCCCccCCCcc
Q psy12394 226 ATGNCAEG--TGKCECRPEYTKPDCNSCAFGYFGYPN------CEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDT 297 (1873)
Q Consensus 226 n~g~C~~~--~g~C~C~~G~~G~~Ce~C~~g~~g~~~------C~~c~C~~~gt~~~~C~~~~G~~C~C~~g~~G~~Ce~ 297 (1873)
|+|+|.+. ++.|.|++||+|.+||. ++++ |.+.||++.+ +| |+|.+|+.
T Consensus 42 ngG~C~~g~~~y~C~Cp~Gf~G~~Ce~------ni~ec~~~~~c~s~pC~ngg------------tc-----~~G~~c~~ 98 (267)
T 4fbr_A 42 DGGKTLKGTMTYNGEGPIGFRGTLSSA------NNYTVENQWGGTSAPWQPGG------------VW-----VLGARDKQ 98 (267)
T ss_dssp STTSEEEEEEEETTSCCEEEEEEECST------TEEEEEEESSSTTSCEEEEE------------EE-----ECCCCSSC
T ss_pred CCCeecCCCCCeEEeCCCCcccccccc------cccccccccCcCCCcccCCC------------ee-----eccCcccc
Confidence 99999886 46999999999999997 5554 7788888533 22 56888875
Q ss_pred CCCCCCCCCCCCCCCcCCCCCCCCcccCCCcccccCCCcccCCCccCCCCCcCCCCCCc---CCCCCCCCCceecCCCCe
Q psy12394 298 CAQGYYNFPTCSPCECNAVGSLSDLCEVDSGNCTCRNNFAGRTCDSCADGYYNYPRCTS---CQCAFHYATGNCAEGTGK 374 (1873)
Q Consensus 298 C~~Gf~g~~~C~~c~C~~~gs~~~~C~~~~g~C~C~~G~~G~~Ce~C~~G~~g~~~C~~---C~c~~c~n~g~C~~~~g~ 374 (1873)
. .+|.+-+|.++|.+.. ...+++|.|++||+|.+|+. ....|+. |...||.++++|
T Consensus 99 ------~-~eC~s~pC~ngG~C~~--~~~sy~C~C~~Gf~G~~Ce~------~~d~C~n~~~c~s~pC~ngg~c------ 157 (267)
T 4fbr_A 99 ------N-IVAVSIKSNDGGKTLT--GTTTYNGEGPIGFKSEVTDG------DTYSVENQWGGSAAPWHSGGVW------ 157 (267)
T ss_dssp ------C-EEEEEEECSSTTSEEE--EEEEETTSCCEEEEEEECCC------CEEEEEEECSSTTSCCEEEEEE------
T ss_pred ------c-cccCCCCCCCCCEEec--CCccEEeeCCCCccccCCCC------CcccccccCCcCCccccCCcce------
Confidence 2 4688888999764332 12367999999999999986 1112221 445566666655
Q ss_pred eeeCCCccCCCCccCCCCccCCCCCCCCCCCCCcEeeeeccCCCCCeeeCCCCcccCCCC
Q psy12394 375 CECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCD 434 (1873)
Q Consensus 375 C~C~~G~tG~~Ce~C~~g~~~~~~C~~~~C~n~gtc~~~cd~~~g~~C~C~~g~~G~~Ce 434 (1873)
|.|.+|+. ...|.+.+|.|+|+|. +.++.|+|.|++||+|.+|+
T Consensus 158 ------~~G~~c~~-------~i~c~~~~c~ngg~C~---dg~~~y~C~Cp~Gf~G~~c~ 201 (267)
T 4fbr_A 158 ------VLGTRGKQ-------NVINVDAKSNDGGKTL---SGTMTYNGEGPIGFRGTLTS 201 (267)
T ss_dssp ------ECCSSTTS-------CEEEEEEECSSTTSEE---EEEEEETTSCCEEEEEEEEE
T ss_pred ------eccccccc-------ccccCCCCCCCCCEee---CCCCCeEEeCCCCccccccc
Confidence 46888885 2346678999999984 67778999999999999986
No 17
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=99.30 E-value=4.5e-12 Score=164.89 Aligned_cols=162 Identities=30% Similarity=0.719 Sum_probs=115.4
Q ss_pred CcCcCCCceeCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCccCC----CCCCCCCCeeecCCCceecC----CCCcC
Q psy12394 174 QGNYEGGGVCQECRDNTEGINCHQRVAGYYRPYGKHLNETDVCQPCQ----CAFHYATGNCAEGTGKCECR----PEYTK 245 (1873)
Q Consensus 174 ~g~~~~GG~C~~C~~~~~G~~Ce~C~~g~~~~~~~~~~~~~~C~~C~----C~~~~n~g~C~~~~g~C~C~----~G~~G 245 (1873)
+|.|. -|+| .|.+||+|.+|| |..+++... ..+.|.+.+ |. ++|+|. .|+|.|+ +||+|
T Consensus 452 ~G~~~-~G~C-~C~~Gy~G~~Ce-~~~~~~~~~-----~~~~C~~~~~~~~Cs---~~G~C~--~g~C~C~~~~~~Gy~G 518 (690)
T 3fcs_B 452 NGTFE-CGVC-RCGPGWLGSQCE-CSEEDYRPS-----QQDECSPREGQPVCS---QRGECL--CGQCVCHSSDFGKITG 518 (690)
T ss_dssp SEEEE-TTEE-EECTTCCSSSSC-CSCC-----------CCCCSSSSSSCGGG---GSEEEC--SSSEEECCCSSCCCBS
T ss_pred CCeEe-CCce-EeCCCccCCcee-eccCccCCc-----cCCcCCCCCCCCCCC---CCCEEE--CCeeEeecCCCCCeeC
Confidence 45553 5678 899999999995 566655432 335566422 44 889998 4899999 99999
Q ss_pred CCCcccCCcccCCCCCCC---CCCCCCCCCCceecCCCCCcccCCCCCccCCCccCCCCCCCCCCCCC---CCcCCCCCC
Q psy12394 246 PDCNSCAFGYFGYPNCEP---CKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFPTCSP---CECNAVGSL 319 (1873)
Q Consensus 246 ~~Ce~C~~g~~g~~~C~~---c~C~~~gt~~~~C~~~~G~~C~C~~g~~G~~Ce~C~~Gf~g~~~C~~---c~C~~~gs~ 319 (1873)
.+||. ....|.. .+|.+ ++.|.. + +|.|++||+|.+|+ |+. ....|.. .+|.++|
T Consensus 519 ~~Ce~------~~~~C~~~~~~~C~~----~G~C~~--g-~C~C~~Gy~G~~Ce-C~~---~~~~C~~~~g~~C~~~G-- 579 (690)
T 3fcs_B 519 KYCEC------DDFSCVRYKGEMCSG----HGQCSC--G-DCLCDSDWTGYYCN-CTT---RTDTCMSSNGLLCSGRG-- 579 (690)
T ss_dssp TTSCB------CSSCCCBSSSSBGGG----SEEEET--T-EEEECTTEESSSSC-EEC---CCTTTBCTTSSBTSSSC--
T ss_pred CCcCc------ccCcCcCCCCCCCCC----CCEecC--C-eeECcCCCcCCCCc-cCC---CCCcccCCCCCCCCCCC--
Confidence 99985 3445654 36764 446865 4 99999999999998 221 1245654 5677754
Q ss_pred CCcccCCCccccc-CCCcccCCCccCCCCCcCCCCCCcCCCCCCCCCceecCCCCeeeeCCCccCCCCcc
Q psy12394 320 SDLCEVDSGNCTC-RNNFAGRTCDSCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCECRPEYTKPDCNS 388 (1873)
Q Consensus 320 ~~~C~~~~g~C~C-~~G~~G~~Ce~C~~G~~g~~~C~~C~c~~c~n~g~C~~~~g~C~C~~G~tG~~Ce~ 388 (1873)
.|. .++|.| ++||+|.+|+.|+ .| ..+|.++++|.. |.++|+|..|+.
T Consensus 580 --~C~--~g~C~C~~~Gy~G~~Ce~C~-------~C----~~~C~~~g~Cv~------C~~g~tG~~C~~ 628 (690)
T 3fcs_B 580 --KCE--CGSCVCIQPGSYGDTCEKCP-------TC----PDACTFKKECVE------CKKFDRGALHDE 628 (690)
T ss_dssp --EEE--TTEEECCSTTCBSTTSCBCT-------TS----CCTTTSCCGGGT------TTTTCCSSSSSS
T ss_pred --EEe--CCEEECCCCCccCCCcCcCC-------CC----CCCCCCCCCccc------CCCCCccCCCCc
Confidence 564 379999 9999999999853 23 257888999976 999999998873
No 18
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=99.29 E-value=6.6e-12 Score=163.30 Aligned_cols=164 Identities=27% Similarity=0.734 Sum_probs=114.5
Q ss_pred CCCeeecC-----CCceecCCCCcCCCCcccCCcccCC---CCCCCC----CCCCCCCCCceecCCCCCcccCC----CC
Q psy12394 226 ATGNCAEG-----TGKCECRPEYTKPDCNSCAFGYFGY---PNCEPC----KCHMNGTLDFYCEPASGQQCPCK----EN 289 (1873)
Q Consensus 226 n~g~C~~~-----~g~C~C~~G~~G~~Ce~C~~g~~g~---~~C~~c----~C~~~gt~~~~C~~~~G~~C~C~----~g 289 (1873)
|+++|.+. .|.|.|++||+|.+|+ |..++++. +.|... +|.+ ++.|. .| +|.|+ +|
T Consensus 444 n~~~C~~g~G~~~~G~C~C~~Gy~G~~Ce-~~~~~~~~~~~~~C~~~~~~~~Cs~----~G~C~--~g-~C~C~~~~~~G 515 (690)
T 3fcs_B 444 NSHRCNNGNGTFECGVCRCGPGWLGSQCE-CSEEDYRPSQQDECSPREGQPVCSQ----RGECL--CG-QCVCHSSDFGK 515 (690)
T ss_dssp TCTTTTTTSEEEETTEEEECTTCCSSSSC-CSCC------CCCCSSSSSSCGGGG----SEEEC--SS-SEEECCCSSCC
T ss_pred CCCcccCCCCeEeCCceEeCCCccCCcee-eccCccCCccCCcCCCCCCCCCCCC----CCEEE--CC-eeEeecCCCCC
Confidence 66666643 4569999999999997 34443332 346543 3664 45686 35 99999 99
Q ss_pred CccCCCccCCCCCCCCCCCCC---CCcCCCCCCCCcccCCCcccccCCCcccCCCccCCCCCcCCCCCCcCCCCCCCCCc
Q psy12394 290 YAGDHCDTCAQGYYNFPTCSP---CECNAVGSLSDLCEVDSGNCTCRNNFAGRTCDSCADGYYNYPRCTSCQCAFHYATG 366 (1873)
Q Consensus 290 ~~G~~Ce~C~~Gf~g~~~C~~---c~C~~~gs~~~~C~~~~g~C~C~~G~~G~~Ce~C~~G~~g~~~C~~C~c~~c~n~g 366 (1873)
|+|.+||. ....|.. ..|.++| .|.. |+|.|++||+|..|+ |+.. ...|..-.-.+|.++|
T Consensus 516 y~G~~Ce~------~~~~C~~~~~~~C~~~G----~C~~--g~C~C~~Gy~G~~Ce-C~~~---~~~C~~~~g~~C~~~G 579 (690)
T 3fcs_B 516 ITGKYCEC------DDFSCVRYKGEMCSGHG----QCSC--GDCLCDSDWTGYYCN-CTTR---TDTCMSSNGLLCSGRG 579 (690)
T ss_dssp CBSTTSCB------CSSCCCBSSSSBGGGSE----EEET--TEEEECTTEESSSSC-EECC---CTTTBCTTSSBTSSSC
T ss_pred eeCCCcCc------ccCcCcCCCCCCCCCCC----EecC--CeeECcCCCcCCCCc-cCCC---CCcccCCCCCCCCCCC
Confidence 99999984 2244653 3576644 5643 899999999999998 2211 1234321225788999
Q ss_pred eecCCCCeeee-CCCccCCCCccCCCCccCCCCCCCCCCCCCcEeeeeccCCCCCeeeCCCCcccCCCC
Q psy12394 367 NCAEGTGKCEC-RPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCD 434 (1873)
Q Consensus 367 ~C~~~~g~C~C-~~G~tG~~Ce~C~~g~~~~~~C~~~~C~n~gtc~~~cd~~~g~~C~C~~g~~G~~Ce 434 (1873)
+|.. ++|.| ++||+|.+|+.|. .| +.+|.++|+|. .|+.+|+|..|+
T Consensus 580 ~C~~--g~C~C~~~Gy~G~~Ce~C~-------~C-~~~C~~~g~Cv-----------~C~~g~tG~~C~ 627 (690)
T 3fcs_B 580 KCEC--GSCVCIQPGSYGDTCEKCP-------TC-PDACTFKKECV-----------ECKKFDRGALHD 627 (690)
T ss_dssp EEET--TEEECCSTTCBSTTSCBCT-------TS-CCTTTSCCGGG-----------TTTTTCCSSSSS
T ss_pred EEeC--CEEECCCCCccCCCcCcCC-------CC-CCCCCCCCCcc-----------cCCCCCccCCCC
Confidence 9965 69999 9999999999752 24 46899999863 289999999775
No 19
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}
Probab=99.25 E-value=1.4e-12 Score=157.93 Aligned_cols=108 Identities=25% Similarity=0.648 Sum_probs=86.3
Q ss_pred CcCCCCCCCCccccCCCCCCCCCCcccCCCceeeccCCcccCCCcccCCCcccCC----------CCCCccccCCCcc--
Q psy12394 1280 TFGYDPIIGCEECNCHPHGVNGTQQCDLFDGSCSCKENIVGRTCDHCVEGHWSFP----------YCVPCECDLRGTT-- 1347 (1873)
Q Consensus 1280 ~~g~~~~~~C~~C~C~~~gs~~~~~C~~~~G~C~C~~~~~G~~C~~C~~G~~g~p----------~C~~C~C~~~gs~-- 1347 (1873)
||.+..+.....|.|+.|++. ...++..+++|.|++||+|++||+|++||||+| .|++|+|+..|+.
T Consensus 243 yYai~di~v~g~C~Cngh~s~-c~~~~~~~~~C~C~~nt~G~~Ce~C~~gy~~~p~~~g~~~~~~~C~~C~Cn~~g~~C~ 321 (375)
T 4aqt_A 243 YYAISDFAVGGRCKCNGHASE-CVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECY 321 (375)
T ss_dssp CCEEEEEEEEEEECCTTSCSC-EEECTTSCEEECCCTTEESTTSCEECTTCCSSCCCCCCSSCCCCCCCCCGGGSCSCEE
T ss_pred eeeecccccCceecCCCCCcc-cCCCCCCCeeeeCcCCCcCCCcccCCCCCcCCCCCCCccCCCCCCCCCcCcCCCCCcc
Confidence 444333334557889999863 234455678899999999999999999999997 4999999988763
Q ss_pred ----ccccCCCCceee-ccCccccCCCCcCCCCccccCCCCCCCCccc
Q psy12394 1348 ----IDICNQGTAECY-CKKNVYGAACDVCKEGTFDIQADNVDGCTRC 1390 (1873)
Q Consensus 1348 ----~~~Cd~~~G~C~-C~~~~~G~~Cd~C~~g~~g~~~~~~~gC~~C 1390 (1873)
...|+..+|+|. |++||+|++||+|++|||+++ +.++|++|
T Consensus 322 ~d~~~~~c~~~~G~C~~C~~n~~G~~Ce~C~~Gyyg~~--~~~~C~pC 367 (375)
T 4aqt_A 322 FDPELYRSTGHGGHCTNCRDNTDGAKCERCRENFFRLG--NTEACSPA 367 (375)
T ss_dssp ECHHHHHHSSCCEEECSCTTTEESTTSCEECSSEECCT--TCSSCEEC
T ss_pred cccccCccCCCCCCCCCCCCCCcCCCCCCCCcCcccCc--CCCCCcCC
Confidence 134677899995 999999999999999999986 46788887
No 20
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=99.23 E-value=5.2e-12 Score=163.73 Aligned_cols=150 Identities=27% Similarity=0.669 Sum_probs=107.0
Q ss_pred CCCeeecCCCceecCCCCcCCCCcccCCcccCCC----CCCCCC----CCCCCCCCceecCCCCCcccCC------CCCc
Q psy12394 226 ATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYP----NCEPCK----CHMNGTLDFYCEPASGQQCPCK------ENYA 291 (1873)
Q Consensus 226 n~g~C~~~~g~C~C~~G~~G~~Ce~C~~g~~g~~----~C~~c~----C~~~gt~~~~C~~~~G~~C~C~------~g~~ 291 (1873)
++|+|. .|.|.|++||+|.+|| |..++++.. .|.+.+ |.+ ++.|. .| +|.|+ +||+
T Consensus 439 ~~G~C~--~g~C~C~~Gy~G~~Ce-c~~~~~~~~~~~~~C~~~~~~~~Cs~----~G~C~--~G-~C~C~~~~~~~~G~~ 508 (687)
T 3k6s_B 439 GKGFLE--CGICRCDTGYIGKNCE-CQTQGRSSQELEGSCRKDNNSIICSG----LGDCV--CG-QCLCHTSDVPGKLIY 508 (687)
T ss_dssp GSEEES--SSSEEECSSEESTTSC-EESSSCCCSGGGSTTSSSTTSCGGGS----SEEEE--TT-EEEECCCCSTTCCEE
T ss_pred CCCEEe--CCEeEcCCCCcCCccc-ccCCcCCccccCCCCCCCCCCCcCCC----CCEEe--CC-EEEcCCCCCCCCCcc
Confidence 678887 5899999999999999 666655433 366543 664 45687 46 99999 9999
Q ss_pred cCCCccCCCCCCCCCCCCC---CCcCC--CCCCCCcccCCCcccccCCCcccCCCccCCCCCcCCCCCCcCCCCCCCCCc
Q psy12394 292 GDHCDTCAQGYYNFPTCSP---CECNA--VGSLSDLCEVDSGNCTCRNNFAGRTCDSCADGYYNYPRCTSCQCAFHYATG 366 (1873)
Q Consensus 292 G~~Ce~C~~Gf~g~~~C~~---c~C~~--~gs~~~~C~~~~g~C~C~~G~~G~~Ce~C~~G~~g~~~C~~C~c~~c~n~g 366 (1873)
|.+||. ....|.. -.|.+ +| .|. .|+|.|++||+|..|+ |+... ..|..-.-.+|.++|
T Consensus 509 G~~Ce~------~~~~C~~~~~~~C~~~~~G----~C~--~g~C~C~~G~~G~~Ce-c~~~~---~~C~~~~g~~Cs~~G 572 (687)
T 3k6s_B 509 GQYCEC------DTINCERYNGQVCGGPGRG----LCF--CGKCRCHPGFEGSACQ-CERTT---EGCLNPRRVECSGRG 572 (687)
T ss_dssp STTSCE------ESSCSCEETTEETSHHHHE----EEE--TTEEEECTTCCSTTSC-SCCSS---CTTBCTTCSBTSSSC
T ss_pred cccccc------ccccccCCCCcCcCCCCCC----eEE--CCEEEcCCCCcCCCCc-cCCCC---CCCCCCCCCCCCCCC
Confidence 999983 1133442 23554 43 454 4799999999999998 33211 234332223788899
Q ss_pred eecCCCCeeeeCCCccCCCCccCCCCccCCCCCCCCCCCCCcEee
Q psy12394 367 NCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLD 411 (1873)
Q Consensus 367 ~C~~~~g~C~C~~G~tG~~Ce~C~~g~~~~~~C~~~~C~n~gtc~ 411 (1873)
+|.. ++|.|++||+|.+|+.|+ .| +.+|.++++|.
T Consensus 573 ~C~~--g~C~C~~Gy~G~~Ce~c~-------~C-~~~C~~~g~Cv 607 (687)
T 3k6s_B 573 RCRC--NVCECHSGYQLPLCQECP-------GC-PSPCGKYISCA 607 (687)
T ss_dssp CBCS--SCBCCSTTCCTTTTCCCT-------TS-CCCCTTTHHHH
T ss_pred cCCC--CEEECCCCCcCCCCCCCC-------CC-CcccCCCCCCC
Confidence 9976 899999999999999753 34 35899999864
No 21
>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*
Probab=99.23 E-value=6.8e-15 Score=168.45 Aligned_cols=192 Identities=13% Similarity=-0.006 Sum_probs=128.6
Q ss_pred CccccCccccccCccccc----------CcCcCCCceeCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCccCCCCCCC
Q psy12394 156 DKCVYDPMVDEKRLSVDI----------QGNYEGGGVCQECRDNTEGINCHQRVAGYYRPYGKHLNETDVCQPCQCAFHY 225 (1873)
Q Consensus 156 ~~C~~d~~~~~~~~s~~~----------~g~~~~GG~C~~C~~~~~G~~Ce~C~~g~~~~~~~~~~~~~~C~~C~C~~~~ 225 (1873)
+.|.+.++|.+..|+.+| +.+|++||+| +.|.+|+. .++|.+-+|.
T Consensus 53 y~C~Cp~Gf~G~~Ce~ni~ec~~~~~c~s~pC~nggtc------~~G~~c~~---------------~~eC~s~pC~--- 108 (267)
T 4fbr_A 53 YNGEGPIGFRGTLSSANNYTVENQWGGTSAPWQPGGVW------VLGARDKQ---------------NIVAVSIKSN--- 108 (267)
T ss_dssp ETTSCCEEEEEEECSTTEEEEEEESSSTTSCEEEEEEE------ECCCCSSC---------------CEEEEEEECS---
T ss_pred eEEeCCCCcccccccccccccccccCcCCCcccCCCee------eccCcccc---------------ccccCCCCCC---
Confidence 444444555555554443 4688899998 68999973 3578766665
Q ss_pred CCCeeecC--CCceecCCCCcCCCCcccCCcccCCCC------CCCCCCCCCCCCCceecCCCCCcccCCCCCccCCCcc
Q psy12394 226 ATGNCAEG--TGKCECRPEYTKPDCNSCAFGYFGYPN------CEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDT 297 (1873)
Q Consensus 226 n~g~C~~~--~g~C~C~~G~~G~~Ce~C~~g~~g~~~------C~~c~C~~~gt~~~~C~~~~G~~C~C~~g~~G~~Ce~ 297 (1873)
|+|+|.+. +++|+|++||+|.+|+. +++. |.+.||++.+ . .+.|.+|++
T Consensus 109 ngG~C~~~~~sy~C~C~~Gf~G~~Ce~------~~d~C~n~~~c~s~pC~ngg------------~-----c~~G~~c~~ 165 (267)
T 4fbr_A 109 DGGKTLTGTTTYNGEGPIGFKSEVTDG------DTYSVENQWGGSAAPWHSGG------------V-----WVLGTRGKQ 165 (267)
T ss_dssp STTSEEEEEEEETTSCCEEEEEEECCC------CEEEEEEECSSTTSCCEEEE------------E-----EECCSSTTS
T ss_pred CCCEEecCCccEEeeCCCCccccCCCC------CcccccccCCcCCccccCCc------------c-----eeccccccc
Confidence 99999876 56999999999999996 4444 5555555321 2 245778876
Q ss_pred CCCCCCCCCCCCCCCcCCCCCCCCcccCCCcccccCCCcccCCCccCCCCCcCCCCCC---cCCCCCCCCCceecCCCCe
Q psy12394 298 CAQGYYNFPTCSPCECNAVGSLSDLCEVDSGNCTCRNNFAGRTCDSCADGYYNYPRCT---SCQCAFHYATGNCAEGTGK 374 (1873)
Q Consensus 298 C~~Gf~g~~~C~~c~C~~~gs~~~~C~~~~g~C~C~~G~~G~~Ce~C~~G~~g~~~C~---~C~c~~c~n~g~C~~~~g~ 374 (1873)
. ..|...+|.++|++.+ ...++.|.|++||+|.+|+. ....|. .|...||.+++++ .
T Consensus 166 ~-------i~c~~~~c~ngg~C~d--g~~~y~C~Cp~Gf~G~~c~~------~i~ec~~~~~c~~~~c~~gG~~-----~ 225 (267)
T 4fbr_A 166 N-------VINVDAKSNDGGKTLS--GTMTYNGEGPIGFRGTLTSP------DTYTVENQWGGSTAPWNPGGFW-----M 225 (267)
T ss_dssp C-------EEEEEEECSSTTSEEE--EEEEETTSCCEEEEEEEEET------TEEEEEEECSCTTSCCEEEEEE-----E
T ss_pred c-------cccCCCCCCCCCEeeC--CCCCeEEeCCCCcccccccc------ccceeccCCCccCCcccCCCeE-----E
Confidence 2 2355567888654322 12357899999999999975 101111 1444556666554 3
Q ss_pred eeeCCCccCCCCccCCCCccCCCCCCCCCCCCCcEeeeeccCCCCCeeeCCCCcccC
Q psy12394 375 CECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGD 431 (1873)
Q Consensus 375 C~C~~G~tG~~Ce~C~~g~~~~~~C~~~~C~n~gtc~~~cd~~~g~~C~C~~g~~G~ 431 (1873)
+.|+.++.+..|+. ||.|+|+| .|.+..|.|.|++||+|+
T Consensus 226 ~~C~~g~n~~~c~~--------------~c~ngGtC---~dg~~sy~CeCp~GF~G~ 265 (267)
T 4fbr_A 226 IGARNGQNVVALNV--------------ASSDGGKT---LAGTMIYNGEGPIGFRAR 265 (267)
T ss_dssp CCCCTTCCEEEEEE--------------ECSSTTSE---EEEEEEETTSCCEEEEEE
T ss_pred EecCCCCccccCCc--------------CCCCCCEe---eCCCcceeecCCCCcccc
Confidence 45777776665553 78899998 466778999999999996
No 22
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=99.19 E-value=1.7e-11 Score=158.94 Aligned_cols=161 Identities=26% Similarity=0.644 Sum_probs=111.0
Q ss_pred CcccCCCcceecCCCCCCCCCcccCCCccCCC----CcccCC----CCCCCCCCcccCCCCceeeC------CCcccCCC
Q psy12394 655 GVSCDDDGKCQCEKNFGGDRCERCKEGLYNFP----ICEACN----CDSHGNIGVSCDDDGKCQCE------KNFGGDRC 720 (1873)
Q Consensus 655 gg~C~~~g~C~C~~g~~G~~Ce~C~~g~~g~~----~C~~C~----C~~~g~~~~~C~~~g~C~C~------~g~~G~~C 720 (1873)
+|+|. .|+|.|++||+|.+|| |..++++.. .|...+ |++ ++.|. .|+|.|. +||+|.+|
T Consensus 440 ~G~C~-~g~C~C~~Gy~G~~Ce-c~~~~~~~~~~~~~C~~~~~~~~Cs~----~G~C~-~G~C~C~~~~~~~~G~~G~~C 512 (687)
T 3k6s_B 440 KGFLE-CGICRCDTGYIGKNCE-CQTQGRSSQELEGSCRKDNNSIICSG----LGDCV-CGQCLCHTSDVPGKLIYGQYC 512 (687)
T ss_dssp SEEES-SSSEEECSSEESTTSC-EESSSCCCSGGGSTTSSSTTSCGGGS----SEEEE-TTEEEECCCCSTTCCEESTTS
T ss_pred CCEEe-CCEeEcCCCCcCCccc-ccCCcCCccccCCCCCCCCCCCcCCC----CCEEe-CCEEEcCCCCCCCCCcccccc
Confidence 57777 6899999999999999 555544433 254432 554 56777 5899999 99999999
Q ss_pred Cc----CCCCCccCCCCcCCCCCC--CCCccCccccccCCCCCceecCCCcccCCccccCCCCcCCCCCCCCCCCc---C
Q psy12394 721 ER----CKEGLYNFPICEECNCNP--EGVLKTFAGCGSLPAGELCECKPKVQGRICDECRPLYWNLKASNPDGCED---C 791 (1873)
Q Consensus 721 e~----C~~g~~g~p~C~~C~C~~--~Gs~~~~~~C~~~~~~g~C~C~~g~~G~~C~~C~~g~~g~~~~~~~~C~~---c 791 (1873)
|. |... . .-.|.+ +|+ |.. ++|.|++||+|..|+ |.. +...|.. .
T Consensus 513 e~~~~~C~~~-~------~~~C~~~~~G~------C~~----g~C~C~~G~~G~~Ce-c~~--------~~~~C~~~~g~ 566 (687)
T 3k6s_B 513 ECDTINCERY-N------GQVCGGPGRGL------CFC----GKCRCHPGFEGSACQ-CER--------TTEGCLNPRRV 566 (687)
T ss_dssp CEESSCSCEE-T------TEETSHHHHEE------EET----TEEEECTTCCSTTSC-SCC--------SSCTTBCTTCS
T ss_pred ccccccccCC-C------CcCcCCCCCCe------EEC----CEEEcCCCCcCCCCc-cCC--------CCCCCCCCCCC
Confidence 83 4431 0 013544 455 442 689999999999997 332 1233433 2
Q ss_pred cCCCCCcccCCcccCCCCCceecCCCCccCCCCCCCCCCccCcCCCCCCCccCcCCCCCcccccccC
Q psy12394 792 DCYTLGTIGGIKNCNPKSGQCVCKATAMNRKCDACMDGTYALQDNNLFGCTECACDIGGSINNLCNK 858 (1873)
Q Consensus 792 ~C~~~Gt~~~~~~C~~~tg~C~C~~g~~G~~C~~C~~g~~g~~~~~~~gC~~C~C~~gg~~~~~C~~ 858 (1873)
.|.++| .|+. |+|.|++||+|.+|++|.. -.+ .+.+...|.+|.++..|.+...|++
T Consensus 567 ~Cs~~G------~C~~--g~C~C~~Gy~G~~Ce~c~~-C~~-~C~~~g~Cv~C~~~~~G~~~~~C~~ 623 (687)
T 3k6s_B 567 ECSGRG------RCRC--NVCECHSGYQLPLCQECPG-CPS-PCGKYISCAECLKFEKGPFGKNCSA 623 (687)
T ss_dssp BTSSSC------CBCS--SCBCCSTTCCTTTTCCCTT-SCC-CCTTTHHHHTTTTSCSCCCSSCSSS
T ss_pred CCCCCC------cCCC--CEEECCCCCcCCCCCCCCC-CCc-ccCCCCCCCcccCCCCCCCCccccc
Confidence 566555 5643 8899999999999998642 111 3555556899999999988777764
No 23
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Probab=99.03 E-value=2.8e-10 Score=120.81 Aligned_cols=116 Identities=22% Similarity=0.547 Sum_probs=86.2
Q ss_pred CCCCCCcCCCCCCCCcccC----CCcccccCCCcccCCCccC---CCCCcCCCCCCcCCCCCCCCCceecC---------
Q psy12394 307 TCSPCECNAVGSLSDLCEV----DSGNCTCRNNFAGRTCDSC---ADGYYNYPRCTSCQCAFHYATGNCAE--------- 370 (1873)
Q Consensus 307 ~C~~c~C~~~gs~~~~C~~----~~g~C~C~~G~~G~~Ce~C---~~G~~g~~~C~~C~c~~c~n~g~C~~--------- 370 (1873)
+|.+.+|.++| +|.. ..+.|.|++||+|.+|+.. ......-..-..|...||.++++|..
T Consensus 2 ~C~~~pC~~~g----~C~~~~~~g~~~C~C~~G~~G~~C~~~~~~~~~~~~c~~~~~C~~~~C~~~g~C~~~~~~~~~~~ 77 (143)
T 4d90_A 2 ICDPNPCENGG----ICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTF 77 (143)
T ss_dssp -CCSCCCGGGC----EEEC-----CCEEECCTTCCTTTTCSCCCCTTTTTSCCCCCTTSSCCCCTTCEEEECCCEETTEE
T ss_pred cCCCCcCCCCC----EeeCCCCCCCEEeECCCCCCCCCCccCccccccccccccCCcCCCCCCCCCCEecCCCccccCCC
Confidence 46667788754 4543 2468999999999999752 11111100112367788999999972
Q ss_pred CCCeeeeCCCccCCCCccCCCCccCCCCCCCCCCCCCcEeeeeccCCCCCeeeCCCCcccCCCCc
Q psy12394 371 GTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDT 435 (1873)
Q Consensus 371 ~~g~C~C~~G~tG~~Ce~C~~g~~~~~~C~~~~C~n~gtc~~~cd~~~g~~C~C~~g~~G~~Ce~ 435 (1873)
..++|.|++||+|.+|+. .+++|...+|.++++|. +...+|.|.|++||+|++|+.
T Consensus 78 ~~~~C~C~~G~~G~~C~~------~i~~C~~~~C~~~~~C~---~~~g~~~C~C~~G~~G~~c~~ 133 (143)
T 4d90_A 78 IGYVCKCPRGFNGIHCQH------NINECEVEPCKNGGICT---DLVANYSCECPGEFMGRNCQY 133 (143)
T ss_dssp CCEEEECCTTEESTTSCE------ECCTTTTCCSCTTCEEE---EETTEEEEECCTTCBSTTSCB
T ss_pred CCeEeECcCCCcCCCccc------CCCcCCCCCCCCCCEeE---CCCCCeEeECCCCCccCCcee
Confidence 346999999999999984 47889999999999985 445678999999999999973
No 24
>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*
Probab=99.00 E-value=3.4e-10 Score=119.03 Aligned_cols=109 Identities=29% Similarity=0.753 Sum_probs=86.2
Q ss_pred CCCCCc--cCCCCCCCCCCeeecCCC--ceecCCCCcCCCCcccCCcccCCCCCCCCCCCCCCCCCceecCC-CCCcccC
Q psy12394 212 ETDVCQ--PCQCAFHYATGNCAEGTG--KCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPA-SGQQCPC 286 (1873)
Q Consensus 212 ~~~~C~--~C~C~~~~n~g~C~~~~g--~C~C~~G~~G~~Ce~C~~g~~g~~~C~~c~C~~~gt~~~~C~~~-~G~~C~C 286 (1873)
++++|. +-+|. ++|+|.+..+ +|.|++||+|..|+. .++.|...+|.++ +.|... .+|+|.|
T Consensus 4 dideC~~~~~~C~---~~g~C~~~~g~~~C~C~~Gy~G~~C~~------~~~~C~~~~C~~~----~~C~~~~g~~~C~C 70 (135)
T 2vj3_A 4 DVDECSLGANPCE---HAGKCINTLGSFECQCLQGYTGPRCEI------DVNECVSNPCQND----ATCLDQIGEFQCIC 70 (135)
T ss_dssp CCCTTTSSSCSSS---TTCEEEECSSSEEEECCTTEESTTSCE------ECCTTTTCCCCSS----CEEEECSSCEEEEC
T ss_pred ccccccCCCCCCC---CCCEeECCCCCEEEECCCCCcCCcccc------cCccCCCCCCCCC----CEEeCCCCCceeeC
Confidence 678887 55565 8899988755 999999999999985 5678888889854 457654 4689999
Q ss_pred CCCCccCCCccCCCCCCCCCCCCCCCcCCCCCCCCcccCC--CcccccCCCcccCCCcc
Q psy12394 287 KENYAGDHCDTCAQGYYNFPTCSPCECNAVGSLSDLCEVD--SGNCTCRNNFAGRTCDS 343 (1873)
Q Consensus 287 ~~g~~G~~Ce~C~~Gf~g~~~C~~c~C~~~gs~~~~C~~~--~g~C~C~~G~~G~~Ce~ 343 (1873)
++||+|..|+. .+++|...+|.+++ +|... .++|.|++||+|.+|+.
T Consensus 71 ~~G~~G~~C~~------~~~~C~~~~C~~~g----~C~~~~g~~~C~C~~G~~G~~C~~ 119 (135)
T 2vj3_A 71 MPGYEGVHCEV------NTDECASSPCLHNG----RCLDKINEFQCECPTGFTGHLCQV 119 (135)
T ss_dssp CTTEESSSSCE------ECCTTTTCCSTTTC----EEEECSSCEEEECCTTEESSSSCE
T ss_pred CCCCcCCccee------cCCcccCCCcCCCC----EeECCCCCeEEECCCCCcCCccCc
Confidence 99999999984 23668877888754 45443 46999999999999974
No 25
>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*
Probab=98.97 E-value=6.7e-10 Score=116.73 Aligned_cols=107 Identities=24% Similarity=0.626 Sum_probs=84.7
Q ss_pred CCCC--CCCcCCCCCCCCcccCC--CcccccCCCcccCCCccCCCCCcCCCCCCcCCCCCCCCCceecCCC--CeeeeCC
Q psy12394 306 PTCS--PCECNAVGSLSDLCEVD--SGNCTCRNNFAGRTCDSCADGYYNYPRCTSCQCAFHYATGNCAEGT--GKCECRP 379 (1873)
Q Consensus 306 ~~C~--~c~C~~~gs~~~~C~~~--~g~C~C~~G~~G~~Ce~C~~G~~g~~~C~~C~c~~c~n~g~C~~~~--g~C~C~~ 379 (1873)
++|. ..+|.++| +|... +++|.|++||+|..|+. .-..|...||.++++|.... ++|.|++
T Consensus 6 deC~~~~~~C~~~g----~C~~~~g~~~C~C~~Gy~G~~C~~---------~~~~C~~~~C~~~~~C~~~~g~~~C~C~~ 72 (135)
T 2vj3_A 6 DECSLGANPCEHAG----KCINTLGSFECQCLQGYTGPRCEI---------DVNECVSNPCQNDATCLDQIGEFQCICMP 72 (135)
T ss_dssp CTTTSSSCSSSTTC----EEEECSSSEEEECCTTEESTTSCE---------ECCTTTTCCCCSSCEEEECSSCEEEECCT
T ss_pred ccccCCCCCCCCCC----EeECCCCCEEEECCCCCcCCcccc---------cCccCCCCCCCCCCEEeCCCCCceeeCCC
Confidence 5676 56787754 45443 45999999999999974 11235557888999997654 5999999
Q ss_pred CccCCCCccCCCCccCCCCCCCCCCCCCcEeeeeccCCCCCeeeCCCCcccCCCC
Q psy12394 380 EYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCD 434 (1873)
Q Consensus 380 G~tG~~Ce~C~~g~~~~~~C~~~~C~n~gtc~~~cd~~~g~~C~C~~g~~G~~Ce 434 (1873)
||+|..|+. .++.|...+|.++|+|. +...+|+|.|++||+|..|+
T Consensus 73 G~~G~~C~~------~~~~C~~~~C~~~g~C~---~~~g~~~C~C~~G~~G~~C~ 118 (135)
T 2vj3_A 73 GYEGVHCEV------NTDECASSPCLHNGRCL---DKINEFQCECPTGFTGHLCQ 118 (135)
T ss_dssp TEESSSSCE------ECCTTTTCCSTTTCEEE---ECSSCEEEECCTTEESSSSC
T ss_pred CCcCCccee------cCCcccCCCcCCCCEeE---CCCCCeEEECCCCCcCCccC
Confidence 999999984 36789999999999984 45567899999999999997
No 26
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A
Probab=98.87 E-value=2.3e-10 Score=127.04 Aligned_cols=141 Identities=19% Similarity=0.431 Sum_probs=102.7
Q ss_pred CCCCCCCCCCCCCceecCC-CCCcccCCCCCccC---CCccCCCCCCCCCCCC----CCCcCCCCCCCCcccC-------
Q psy12394 261 CEPCKCHMNGTLDFYCEPA-SGQQCPCKENYAGD---HCDTCAQGYYNFPTCS----PCECNAVGSLSDLCEV------- 325 (1873)
Q Consensus 261 C~~c~C~~~gt~~~~C~~~-~G~~C~C~~g~~G~---~Ce~C~~Gf~g~~~C~----~c~C~~~gs~~~~C~~------- 325 (1873)
..+.||.+ +.|... .+|+|.|++||+|. .|+. +++|. ..+|.+++ +|..
T Consensus 8 ~~~~pC~n-----g~C~~~~g~~~C~C~~G~~g~~~~~C~~-------id~C~~~~~~~~C~~~~----~C~~~~~~~~~ 71 (186)
T 1z1y_A 8 TVDTICXN-----GQLVQMSNHFXCMCNEGLVHLSENTCEE-------XNECXXETLGXACGEFG----QCIENPDPAQV 71 (186)
T ss_dssp CTTCCCBT-----EEEEECSSCEEEEECTTEEEEETTEEEE-------CCCCSGGGTTSEEETTE----EEEECSSTTSS
T ss_pred CCCCCCCC-----CEeECCCCCeEeECCCCCccCCCCccCC-------CCcccCCCCCCCCCCCC----EeecCCCCcCC
Confidence 45668862 267654 56999999999998 6752 36677 56787754 4543
Q ss_pred CCcccccCCCcccCCCccCCCCCcCCCCCCcCCCCCCCCCceec----CC--CCeeeeCCCccC-----CCCccCCCCcc
Q psy12394 326 DSGNCTCRNNFAGRTCDSCADGYYNYPRCTSCQCAFHYATGNCA----EG--TGKCECRPEYTK-----PDCNSCAFGYF 394 (1873)
Q Consensus 326 ~~g~C~C~~G~~G~~Ce~C~~G~~g~~~C~~C~c~~c~n~g~C~----~~--~g~C~C~~G~tG-----~~Ce~C~~g~~ 394 (1873)
.++.|.|++||+|..++ |. -..|...||.++++|. .. .++|.|++||+| ..|+. .
T Consensus 72 g~y~C~C~~G~~g~~~~-C~--------~d~C~~~~C~~~g~C~~~~~~~~g~~~C~C~~Gy~g~~~~~~~C~~-----~ 137 (186)
T 1z1y_A 72 NMYXCGCIEGYTLXEDT-CV--------LDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTX-----T 137 (186)
T ss_dssp CSEEEEECTTEEEETTE-EE--------EGGGTTCCCCTTEEEEEEEETTEEEEEEEECTEEEEETTTTTEEEE-----E
T ss_pred CCEECCCCCCCccCCCC-CC--------CCcCcCCCCCCCCEEeeCCcCCCCCceEECCCCCcccCCCCCcceE-----c
Confidence 34689999999998653 11 0235557888999997 44 359999999999 77774 0
Q ss_pred CCCCCCCCCC-CCCcEeeeeccCCCCCeeeCCCCcccCCCCc
Q psy12394 395 GYPNCEPCKC-HMNGTLDFYCEPASGQQCPCKENYAGDHCDT 435 (1873)
Q Consensus 395 ~~~~C~~~~C-~n~gtc~~~cd~~~g~~C~C~~g~~G~~Ce~ 435 (1873)
..++|.. +| .++++|. +...+|.|.|++||+|+.|+.
T Consensus 138 ~~~~C~~-~C~~~~~~C~---n~~g~y~C~C~~G~~g~~~~~ 175 (186)
T 1z1y_A 138 GETACQL-XCNTDNEVCX---NVEGVYXCQCMEGFTFDXEXN 175 (186)
T ss_dssp ECCCCCC-CCCTTTEEEE---EETTEEEEEECTTCEEETTTT
T ss_pred CCCcccc-cccccCccee---cCCCCeeeECCCCCccCcccc
Confidence 1367774 99 9999985 445678999999999999873
No 27
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Probab=98.82 E-value=3.9e-09 Score=111.90 Aligned_cols=112 Identities=34% Similarity=0.821 Sum_probs=81.1
Q ss_pred CCccCCCCCCCCCCeeecC----CCceecCCCCcCCCCccc---CCc---ccCCCCCCCCCCCCCCCCCceec-------
Q psy12394 215 VCQPCQCAFHYATGNCAEG----TGKCECRPEYTKPDCNSC---AFG---YFGYPNCEPCKCHMNGTLDFYCE------- 277 (1873)
Q Consensus 215 ~C~~C~C~~~~n~g~C~~~----~g~C~C~~G~~G~~Ce~C---~~g---~~g~~~C~~c~C~~~gt~~~~C~------- 277 (1873)
+|.+-+|. ++|+|.+. .++|.|++||+|..|+.. ... ....+.|.+.+|.+++ .|.
T Consensus 2 ~C~~~pC~---~~g~C~~~~~~g~~~C~C~~G~~G~~C~~~~~~~~~~~~c~~~~~C~~~~C~~~g----~C~~~~~~~~ 74 (143)
T 4d90_A 2 ICDPNPCE---NGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGG----TCEISEAYRG 74 (143)
T ss_dssp -CCSCCCG---GGCEEEC-----CCEEECCTTCCTTTTCSCCCCTTTTTSCCCCCTTSSCCCCTTC----EEEECCCEET
T ss_pred cCCCCcCC---CCCEeeCCCCCCCEEeECCCCCCCCCCccCccccccccccccCCcCCCCCCCCCC----EecCCCcccc
Confidence 45555555 88999874 368999999999999852 111 1234568888888544 575
Q ss_pred C-CCCCcccCCCCCccCCCccCCCCCCCCCCCCCCCcCCCCCCCCcccCC--CcccccCCCcccCCCcc
Q psy12394 278 P-ASGQQCPCKENYAGDHCDTCAQGYYNFPTCSPCECNAVGSLSDLCEVD--SGNCTCRNNFAGRTCDS 343 (1873)
Q Consensus 278 ~-~~G~~C~C~~g~~G~~Ce~C~~Gf~g~~~C~~c~C~~~gs~~~~C~~~--~g~C~C~~G~~G~~Ce~ 343 (1873)
. ..+|.|.|++||+|.+|+. .+++|...+|.+++ +|.+. ++.|.|++||+|.+|+.
T Consensus 75 ~~~~~~~C~C~~G~~G~~C~~------~i~~C~~~~C~~~~----~C~~~~g~~~C~C~~G~~G~~c~~ 133 (143)
T 4d90_A 75 DTFIGYVCKCPRGFNGIHCQH------NINECEVEPCKNGG----ICTDLVANYSCECPGEFMGRNCQY 133 (143)
T ss_dssp TEECCEEEECCTTEESTTSCE------ECCTTTTCCSCTTC----EEEEETTEEEEECCTTCBSTTSCB
T ss_pred CCCCCeEeECcCCCcCCCccc------CCCcCCCCCCCCCC----EeECCCCCeEeECCCCCccCCcee
Confidence 2 2468999999999999974 34678877888854 55433 45899999999999985
No 28
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A
Probab=98.78 E-value=5.9e-10 Score=123.76 Aligned_cols=135 Identities=19% Similarity=0.408 Sum_probs=95.1
Q ss_pred CeeecCCC--ceecCCCCcCC---CCcccCCcccCCCCCC----CCCCCCCCCCCceecCC------CCCcccCCCCCcc
Q psy12394 228 GNCAEGTG--KCECRPEYTKP---DCNSCAFGYFGYPNCE----PCKCHMNGTLDFYCEPA------SGQQCPCKENYAG 292 (1873)
Q Consensus 228 g~C~~~~g--~C~C~~G~~G~---~Ce~C~~g~~g~~~C~----~c~C~~~gt~~~~C~~~------~G~~C~C~~g~~G 292 (1873)
|+|.+..+ +|.|++||+|. .|+. +++|. ..+|.++ +.|... .+|+|.|++||+|
T Consensus 16 g~C~~~~g~~~C~C~~G~~g~~~~~C~~-------id~C~~~~~~~~C~~~----~~C~~~~~~~~~g~y~C~C~~G~~g 84 (186)
T 1z1y_A 16 GQLVQMSNHFXCMCNEGLVHLSENTCEE-------XNECXXETLGXACGEF----GQCIENPDPAQVNMYXCGCIEGYTL 84 (186)
T ss_dssp EEEEECSSCEEEEECTTEEEEETTEEEE-------CCCCSGGGTTSEEETT----EEEEECSSTTSSCSEEEEECTTEEE
T ss_pred CEeECCCCCeEeECCCCCccCCCCccCC-------CCcccCCCCCCCCCCC----CEeecCCCCcCCCCEECCCCCCCcc
Confidence 49988654 89999999998 6652 46787 6788754 467654 3689999999999
Q ss_pred CCCccCCCCCCCCCCCCCCCcCCCCCCCCcccCC--CcccccCCCccc-----CCCccCCCCCcCCCCCCcCCCCCC-CC
Q psy12394 293 DHCDTCAQGYYNFPTCSPCECNAVGSLSDLCEVD--SGNCTCRNNFAG-----RTCDSCADGYYNYPRCTSCQCAFH-YA 364 (1873)
Q Consensus 293 ~~Ce~C~~Gf~g~~~C~~c~C~~~gs~~~~C~~~--~g~C~C~~G~~G-----~~Ce~C~~G~~g~~~C~~C~c~~c-~n 364 (1873)
..++ |. +++|..-+|.+++.+...+... ++.|.|++||+| ..|+.- ....| . .+| .+
T Consensus 85 ~~~~-C~-----~d~C~~~~C~~~g~C~~~~~~~~g~~~C~C~~Gy~g~~~~~~~C~~~-----~~~~C---~-~~C~~~ 149 (186)
T 1z1y_A 85 XEDT-CV-----LDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXT-----GETAC---Q-LXCNTD 149 (186)
T ss_dssp ETTE-EE-----EGGGTTCCCCTTEEEEEEEETTEEEEEEEECTEEEEETTTTTEEEEE-----ECCCC---C-CCCCTT
T ss_pred CCCC-CC-----CCcCcCCCCCCCCEEeeCCcCCCCCceEECCCCCcccCCCCCcceEc-----CCCcc---c-cccccc
Confidence 9663 21 2567777788754332111133 459999999999 677530 00123 3 378 88
Q ss_pred CceecCCC--CeeeeCCCccCCCCcc
Q psy12394 365 TGNCAEGT--GKCECRPEYTKPDCNS 388 (1873)
Q Consensus 365 ~g~C~~~~--g~C~C~~G~tG~~Ce~ 388 (1873)
+++|.... ++|.|++||+|..|+.
T Consensus 150 ~~~C~n~~g~y~C~C~~G~~g~~~~~ 175 (186)
T 1z1y_A 150 NEVCXNVEGVYXCQCMEGFTFDXEXN 175 (186)
T ss_dssp TEEEEEETTEEEEEECTTCEEETTTT
T ss_pred CcceecCCCCeeeECCCCCccCcccc
Confidence 99997544 5899999999999884
No 29
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.75 E-value=2e-09 Score=131.06 Aligned_cols=108 Identities=21% Similarity=0.474 Sum_probs=39.5
Q ss_pred CcCCCCCCC-ccccCCC--ceEEecCCccCCCCCcCCCCCcCCCC------------CCCCccccCCCCCCCCCCcccCC
Q psy12394 1244 CHPCNCPFT-AVCDSYT--GECICAARVIGKKCDQCEPNTFGYDP------------IIGCEECNCHPHGVNGTQQCDLF 1308 (1873)
Q Consensus 1244 C~~C~C~~~-~~C~~~t--g~C~C~~~~~G~~C~~C~~g~~g~~~------------~~~C~~C~C~~~gs~~~~~C~~~ 1308 (1873)
+.+|.|+.+ +.|++.+ ++|.|++|+.|++||+|.++||+.+- ...|++|+|+.+| ..||..
T Consensus 294 ~g~C~CnGHas~C~~~~g~~~C~C~~~ttG~~CE~C~pgy~~~P~~~gt~~p~~~g~~~~C~pC~Cn~~g----~~CD~~ 369 (426)
T 3zyj_B 294 RGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACIPSISSIGT----NVCDNE 369 (426)
T ss_dssp EEEECCSSSCSCEEEETTEEEECCCTTEESSSSCEECTTCCSSCCCCCBCCSSSSCBCCCCCCCCC--------------
T ss_pred cccCcCCCchhhcCCCCCCceeeCCCCCcCCCccccccccccCcccCCcccccCCCCCCcccCCCCCCCc----CccccC
Confidence 345667755 5787755 49999999999999999999987421 1249999999876 389999
Q ss_pred Cceee----ccCCcccCCCcccCCCcccCCCCCCccccCCCccccccCCCCceeeccCcc
Q psy12394 1309 DGSCS----CKENIVGRTCDHCVEGHWSFPYCVPCECDLRGTTIDICNQGTAECYCKKNV 1364 (1873)
Q Consensus 1309 ~G~C~----C~~~~~G~~C~~C~~G~~g~p~C~~C~C~~~gs~~~~Cd~~~G~C~C~~~~ 1364 (1873)
+++|. |+.++ +| +|++||+|. .|..|.|++.|+ |+..+|+|.=+.++
T Consensus 370 t~~C~ngg~C~~~~---~C-~C~~G~~G~-~Ce~c~C~~~g~----C~~~~Gqc~~~~~~ 420 (426)
T 3zyj_B 370 LLHCQNGGTCHNNV---RC-LCPAAYTGI-LCEKLRCEEAGS----CGSDSGQGAPPHGT 420 (426)
T ss_dssp ------------------------------------------------------------
T ss_pred cccCCCCCCcCCCC---CC-cCCCCCcCC-CCcCCCCCCCCc----ccCCCCccCCCCCc
Confidence 99997 99987 99 999999994 499999998764 99999999876653
No 30
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Probab=98.59 E-value=1.9e-08 Score=98.10 Aligned_cols=85 Identities=20% Similarity=0.377 Sum_probs=64.6
Q ss_pred CcccccCCCcccCCCccCCCCCcCCCCCCcCCCCCCCCCceecCCCCeeeeCCCccCCCCc-cCCCCccCCCCCCCCCCC
Q psy12394 327 SGNCTCRNNFAGRTCDSCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCECRPEYTKPDCN-SCAFGYFGYPNCEPCKCH 405 (1873)
Q Consensus 327 ~g~C~C~~G~~G~~Ce~C~~G~~g~~~C~~C~c~~c~n~g~C~~~~g~C~C~~G~tG~~Ce-~C~~g~~~~~~C~~~~C~ 405 (1873)
+++|.|.+||+|..|+. +.| ...||.|+ ...++|.|++||+ +|+ . .++.|.+.||+
T Consensus 1 sy~C~C~~g~~g~~c~~--------~~c---~~~pC~n~----~~~y~C~C~~G~~--~C~~~------~~~~C~~~pC~ 57 (91)
T 1tpg_A 1 SYQVICRDEKTQMIYQQ--------HQS---WLRPVLRS----NRVEYCWCNSGRA--QCHSV------PVKSCSEPRCF 57 (91)
T ss_dssp CCCCCCBCSSSCCBCCS--------SCE---EEEECSSS----SCEEEEECSSSCC--BCCEE------CEEECSSCCSC
T ss_pred CeeeECCCCCcCCeECC--------Ccc---cCCccccC----CCCcEeECCCCCc--ccccC------cCCcccCCCCC
Confidence 46899999999998864 233 23455554 3456899999998 786 3 46789999999
Q ss_pred CCcEeeeeccCCCCCeeeCCCCcccCCCCc
Q psy12394 406 MNGTLDFYCEPASGQQCPCKENYAGDHCDT 435 (1873)
Q Consensus 406 n~gtc~~~cd~~~g~~C~C~~g~~G~~Ce~ 435 (1873)
|+|+|... ....+|+|.|++||+|++|+.
T Consensus 58 ngg~C~~~-~~~~~~~C~C~~G~~G~~Ce~ 86 (91)
T 1tpg_A 58 NGGTCQQA-LYFSDFVCQCPEGFAGKSCEI 86 (91)
T ss_dssp TTCEEEEE-SSSSCEEEECCTTCBSSSCCB
T ss_pred CCCEeecC-CCCCCeEeECCCCCcCCcCCc
Confidence 99998521 112678999999999999983
No 31
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Probab=98.35 E-value=1.6e-07 Score=91.50 Aligned_cols=81 Identities=17% Similarity=0.342 Sum_probs=62.3
Q ss_pred CcccCCCCCccCCCccCCCCCCCCCCCCCCCcCCCCCCCCcccCCCcccccCCCcccCCCccCCCCCcCCCCCCcCCCCC
Q psy12394 282 QQCPCKENYAGDHCDTCAQGYYNFPTCSPCECNAVGSLSDLCEVDSGNCTCRNNFAGRTCDSCADGYYNYPRCTSCQCAF 361 (1873)
Q Consensus 282 ~~C~C~~g~~G~~Ce~C~~Gf~g~~~C~~c~C~~~gs~~~~C~~~~g~C~C~~G~~G~~Ce~C~~G~~g~~~C~~C~c~~ 361 (1873)
|+|.|++||+|..|+. ++|..-+|.++ ...+.|.|++||+ +|+. ..-..|..+|
T Consensus 2 y~C~C~~g~~g~~c~~--------~~c~~~pC~n~--------~~~y~C~C~~G~~--~C~~--------~~~~~C~~~p 55 (91)
T 1tpg_A 2 YQVICRDEKTQMIYQQ--------HQSWLRPVLRS--------NRVEYCWCNSGRA--QCHS--------VPVKSCSEPR 55 (91)
T ss_dssp CCCCCBCSSSCCBCCS--------SCEEEEECSSS--------SCEEEEECSSSCC--BCCE--------ECEEECSSCC
T ss_pred eeeECCCCCcCCeECC--------CcccCCccccC--------CCCcEeECCCCCc--cccc--------CcCCcccCCC
Confidence 7999999999999874 55655566653 2356899999998 7761 0113466689
Q ss_pred CCCCceecC----CCCeeeeCCCccCCCCcc
Q psy12394 362 HYATGNCAE----GTGKCECRPEYTKPDCNS 388 (1873)
Q Consensus 362 c~n~g~C~~----~~g~C~C~~G~tG~~Ce~ 388 (1873)
|.|+|+|.. ..++|.|++||+|.+|+.
T Consensus 56 C~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~ 86 (91)
T 1tpg_A 56 CFNGGTCQQALYFSDFVCQCPEGFAGKSCEI 86 (91)
T ss_dssp SCTTCEEEEESSSSCEEEECCTTCBSSSCCB
T ss_pred CCCCCEeecCCCCCCeEeECCCCCcCCcCCc
Confidence 999999974 456999999999999984
No 32
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Probab=98.14 E-value=9.1e-07 Score=99.78 Aligned_cols=97 Identities=25% Similarity=0.666 Sum_probs=70.2
Q ss_pred CcccCCCcccccCCCcccCCCccCCCCCcCC----CCCCc-CCCCCCCCCceecCCCCeeeeCCC------ccCCCCccC
Q psy12394 321 DLCEVDSGNCTCRNNFAGRTCDSCADGYYNY----PRCTS-CQCAFHYATGNCAEGTGKCECRPE------YTKPDCNSC 389 (1873)
Q Consensus 321 ~~C~~~~g~C~C~~G~~G~~Ce~C~~G~~g~----~~C~~-C~c~~c~n~g~C~~~~g~C~C~~G------~tG~~Ce~C 389 (1873)
++|. .|.|.|.+||+|.+|+ |+.+.+.. ..|.. +...+|.++|+|. .++|.|.+| |+|.+|+.
T Consensus 102 G~C~--~g~C~C~~G~~G~~Ce-c~~~~~~~~~~~~~C~~~~~~~~Csg~G~C~--~g~C~C~~gw~~~~~~~G~~Ce~- 175 (217)
T 2p28_B 102 GFLE--CGICRCDTGYIGKNCE-CQTQGRSSQELEGSCRKDNNSIICSGLGDCV--CGQCLCHTSDVPGKLIYGQYCEC- 175 (217)
T ss_dssp EEEE--TTEEEECTTEESTTSC-EECCCCC-GGGGGGGBSSTTSCBGGGTEEEE--TTEEEECCCCSTTCCEESTTSCE-
T ss_pred ceEE--CCEEECCCCccCCccc-ccCcccccccCCCcCCCCCCCCCCCCCCEEe--CCceECCCCCCCcccEECCCccc-
Confidence 3554 3899999999999998 55443321 12332 2246788999998 479999999 69999983
Q ss_pred CCCccCCCCCCCC---CCCCC--cEeeeeccCCCCCeeeCCCCcccCCCCc
Q psy12394 390 AFGYFGYPNCEPC---KCHMN--GTLDFYCEPASGQQCPCKENYAGDHCDT 435 (1873)
Q Consensus 390 ~~g~~~~~~C~~~---~C~n~--gtc~~~cd~~~g~~C~C~~g~~G~~Ce~ 435 (1873)
....|... +|.++ |+|. .+ +|.|.+||+|..|+.
T Consensus 176 -----~~~~C~~~~g~~C~~~~~G~C~------~g-~C~C~~G~~G~~C~~ 214 (217)
T 2p28_B 176 -----DTINCERYNGQVCGGPGRGLCF------CG-KCRCHPGFEGSACQH 214 (217)
T ss_dssp -----ESSCSCEETTEETTCTTTEEEE------TT-EEEECTTEESTTSCE
T ss_pred -----CCccCCCCCCCCCCCCCCcEEe------CC-eeECCCCCccCCcCC
Confidence 13345443 68888 9974 13 899999999999974
No 33
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A
Probab=98.08 E-value=1.8e-06 Score=91.38 Aligned_cols=105 Identities=18% Similarity=0.410 Sum_probs=73.0
Q ss_pred CcCCCCCCCCcccCCCcccccCCCcccC---------CCccCCCCCcCCCCCCcCCCC---CCCCCceecCC--CCeeee
Q psy12394 312 ECNAVGSLSDLCEVDSGNCTCRNNFAGR---------TCDSCADGYYNYPRCTSCQCA---FHYATGNCAEG--TGKCEC 377 (1873)
Q Consensus 312 ~C~~~gs~~~~C~~~~g~C~C~~G~~G~---------~Ce~C~~G~~g~~~C~~C~c~---~c~n~g~C~~~--~g~C~C 377 (1873)
+|.++ ++|.. +++|.|++||+|. .|+. . ..|... +|.++++|... .++|.|
T Consensus 8 ~C~~~----~~C~~-~~~C~C~~G~~g~~~~~~~~~~~C~d-------i---deC~~~~~~~C~~~~~C~n~~g~y~C~C 72 (143)
T 2bou_A 8 WCPQD----SSCVN-ATACRCNPGFSSFSEIITTPMETCDD-------I---NECATLSKVSCGKFSDCWNTEGSYDCVC 72 (143)
T ss_dssp TCCTT----EEESS-SSCEEECTTEECSSSSBCSTTCCCEE-------C---CGGGC----CCCTTEEEEECSSCEEEEE
T ss_pred cCCCC----CEEcC-CCEEeCCCCCcCccccccCCCCcCCc-------c---ccccCCCCCCCCCCCEEEcCCCCeEeEC
Confidence 46554 45654 4899999999984 4531 1 224433 78889999754 459999
Q ss_pred CCCccCCCCcc-CCC----CccCCCCCCC--CCCCCCcEeeeeccCCCCCeeeCCCCcccCCCC
Q psy12394 378 RPEYTKPDCNS-CAF----GYFGYPNCEP--CKCHMNGTLDFYCEPASGQQCPCKENYAGDHCD 434 (1873)
Q Consensus 378 ~~G~tG~~Ce~-C~~----g~~~~~~C~~--~~C~n~gtc~~~cd~~~g~~C~C~~g~~G~~Ce 434 (1873)
++||+|..++. +.. .-.++++|.. .+|.++++|. +...+|.|.|++||+|....
T Consensus 73 ~~Gy~g~~~~~~~~~~~~~~C~dideC~~~~~~C~~~~~C~---n~~g~y~C~C~~Gy~g~~~~ 133 (143)
T 2bou_A 73 SPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCF---NTVGSYSCRCRPGWKPRHGI 133 (143)
T ss_dssp CTTEEETTCCSCBSSGGGCCEEECCHHHHTCCCCCTTSEEE---ECSSCEEEECCSSSCBCTTC
T ss_pred CCCcccCcCccccccCCCCCcCCccCccCcCCCCCCCCEEE---CCCCCEEeeCCCCcccCCCC
Confidence 99999986541 000 0013677773 7899999984 55677999999999998865
No 34
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Probab=98.04 E-value=1.4e-06 Score=98.29 Aligned_cols=98 Identities=28% Similarity=0.680 Sum_probs=68.2
Q ss_pred CCCeeecCCCceecCCCCcCCCCcccCCcccCC----CCCC----CCCCCCCCCCCceecCCCCCcccCCCC------Cc
Q psy12394 226 ATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGY----PNCE----PCKCHMNGTLDFYCEPASGQQCPCKEN------YA 291 (1873)
Q Consensus 226 n~g~C~~~~g~C~C~~G~~G~~Ce~C~~g~~g~----~~C~----~c~C~~~gt~~~~C~~~~G~~C~C~~g------~~ 291 (1873)
++|+|.. |.|.|.+||+|.+|| |..+.+.. ..|. ..+|.++ +.|. .| +|.|.+| |+
T Consensus 100 g~G~C~~--g~C~C~~G~~G~~Ce-c~~~~~~~~~~~~~C~~~~~~~~Csg~----G~C~--~g-~C~C~~gw~~~~~~~ 169 (217)
T 2p28_B 100 GKGFLEC--GICRCDTGYIGKNCE-CQTQGRSSQELEGSCRKDNNSIICSGL----GDCV--CG-QCLCHTSDVPGKLIY 169 (217)
T ss_dssp TSEEEET--TEEEECTTEESTTSC-EECCCCC-GGGGGGGBSSTTSCBGGGT----EEEE--TT-EEEECCCCSTTCCEE
T ss_pred CCceEEC--CEEECCCCccCCccc-ccCcccccccCCCcCCCCCCCCCCCCC----CEEe--CC-ceECCCCCCCcccEE
Confidence 7899985 899999999999999 55433221 1344 3567644 4686 36 9999999 69
Q ss_pred cCCCccCCCCCCCCCCCCCC---CcCCCCCCCCcccCCCcccccCCCcccCCCcc
Q psy12394 292 GDHCDTCAQGYYNFPTCSPC---ECNAVGSLSDLCEVDSGNCTCRNNFAGRTCDS 343 (1873)
Q Consensus 292 G~~Ce~C~~Gf~g~~~C~~c---~C~~~gs~~~~C~~~~g~C~C~~G~~G~~Ce~ 343 (1873)
|.+|+. ....|... .|.+++ .++|. .++|.|.+||+|..|+.
T Consensus 170 G~~Ce~------~~~~C~~~~g~~C~~~~--~G~C~--~g~C~C~~G~~G~~C~~ 214 (217)
T 2p28_B 170 GQYCEC------DTINCERYNGQVCGGPG--RGLCF--CGKCRCHPGFEGSACQH 214 (217)
T ss_dssp STTSCE------ESSCSCEETTEETTCTT--TEEEE--TTEEEECTTEESTTSCE
T ss_pred CCCccc------CCccCCCCCCCCCCCCC--CcEEe--CCeeECCCCCccCCcCC
Confidence 999983 11335432 466541 14565 37999999999999975
No 35
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A
Probab=97.98 E-value=3.3e-06 Score=89.33 Aligned_cols=112 Identities=17% Similarity=0.298 Sum_probs=73.4
Q ss_pred CcccCCCCceeeCCCcccC---------CCCcCCCCCccCCCCcCC---CCCCCCCccCccccccCCCCCceecCCCccc
Q psy12394 700 GVSCDDDGKCQCEKNFGGD---------RCERCKEGLYNFPICEEC---NCNPEGVLKTFAGCGSLPAGELCECKPKVQG 767 (1873)
Q Consensus 700 ~~~C~~~g~C~C~~g~~G~---------~Ce~C~~g~~g~p~C~~C---~C~~~Gs~~~~~~C~~~~~~g~C~C~~g~~G 767 (1873)
+++|.++++|.|++||+|. .|+. ...|..- +|.+.++ |.+..++++|.|++||+|
T Consensus 12 ~~~C~~~~~C~C~~G~~g~~~~~~~~~~~C~d-------ideC~~~~~~~C~~~~~------C~n~~g~y~C~C~~Gy~g 78 (143)
T 2bou_A 12 DSSCVNATACRCNPGFSSFSEIITTPMETCDD-------INECATLSKVSCGKFSD------CWNTEGSYDCVCSPGYEP 78 (143)
T ss_dssp TEEESSSSCEEECTTEECSSSSBCSTTCCCEE-------CCGGGC----CCCTTEE------EEECSSCEEEEECTTEEE
T ss_pred CCEEcCCCEEeCCCCCcCccccccCCCCcCCc-------cccccCCCCCCCCCCCE------EEcCCCCeEeECCCCccc
Confidence 6788888999999999984 5531 1122221 3544444 667777899999999999
Q ss_pred CCccccCCCCcCCCCCCCCCCCc--CcCCCCCcccCCcccCCCCCceecCCCCccCCCC-CCCC
Q psy12394 768 RICDECRPLYWNLKASNPDGCED--CDCYTLGTIGGIKNCNPKSGQCVCKATAMNRKCD-ACMD 828 (1873)
Q Consensus 768 ~~C~~C~~g~~g~~~~~~~~C~~--c~C~~~Gt~~~~~~C~~~tg~C~C~~g~~G~~C~-~C~~ 828 (1873)
..++.=-....+..|.+++.|.. .+|.+++++.+. ..+++|.|++||+|.... .|.+
T Consensus 79 ~~~~~~~~~~~~~~C~dideC~~~~~~C~~~~~C~n~----~g~y~C~C~~Gy~g~~~~~~C~~ 138 (143)
T 2bou_A 79 VSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNT----VGSYSCRCRPGWKPRHGIPNNQK 138 (143)
T ss_dssp TTCCSCBSSGGGCCEEECCHHHHTCCCCCTTSEEEEC----SSCEEEECCSSSCBCTTCCSSBT
T ss_pred CcCccccccCCCCCcCCccCccCcCCCCCCCCEEECC----CCCEEeeCCCCcccCCCCccCcc
Confidence 97753111122345556677763 578776655432 245689999999998764 4443
No 36
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Probab=97.96 E-value=1e-06 Score=95.47 Aligned_cols=35 Identities=31% Similarity=1.042 Sum_probs=26.6
Q ss_pred CCCCCc-cCCCCCCCCCCeeecCCC--ceecCCCCc----CCCCcc
Q psy12394 212 ETDVCQ-PCQCAFHYATGNCAEGTG--KCECRPEYT----KPDCNS 250 (1873)
Q Consensus 212 ~~~~C~-~C~C~~~~n~g~C~~~~g--~C~C~~G~~----G~~Ce~ 250 (1873)
++|+|. +-+|. +++|.+..+ +|.|++||+ |..|+.
T Consensus 2 dideC~~~~~C~----~~~C~n~~gsy~C~C~~Gy~~~~~g~~C~d 43 (162)
T 1uzk_A 2 DVNECLDPTTCI----SGNCVNTPGSYICDCPPDFELNPTRVGCVD 43 (162)
T ss_dssp CCCGGGSTTSSB----TSEEEEETTEEEEECCTTCEECTTSSBEEC
T ss_pred ccccCCCCCCCC----CCEeECCCCCEEEeCCCCCeECCCCCcccC
Confidence 578887 34553 479987654 999999998 888874
No 37
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*
Probab=97.87 E-value=8.4e-06 Score=104.88 Aligned_cols=113 Identities=21% Similarity=0.572 Sum_probs=79.9
Q ss_pred CCCCCccCCCCCCCCCCeeecCC---Cce-ecCCCCcC--CCCcccCCcccCCCCCCCCC--CCCCCCCCceecCC-CCC
Q psy12394 212 ETDVCQPCQCAFHYATGNCAEGT---GKC-ECRPEYTK--PDCNSCAFGYFGYPNCEPCK--CHMNGTLDFYCEPA-SGQ 282 (1873)
Q Consensus 212 ~~~~C~~C~C~~~~n~g~C~~~~---g~C-~C~~G~~G--~~Ce~C~~g~~g~~~C~~c~--C~~~gt~~~~C~~~-~G~ 282 (1873)
++++|.+-+|. ++++|.+.. ++| .|++||+| ..|+ .+++|...+ |.+++.. ..|... .+|
T Consensus 2 DIDeC~~nPC~---~gg~C~n~~~Gsy~C~~C~~GytGdg~~Ce-------DiDEC~~~p~~C~~gg~~-~~CvNt~gsY 70 (634)
T 1yo8_A 2 DPDGCLSNPCF---PGAQCSSFPDGSWSCGFCPVGFLGNGTHCE-------DLDECALVPDICFSTSKV-PRCVNTQPGF 70 (634)
T ss_dssp --CGGGGCCSC---TTCCEEECTTSCEEECCCCTTBCSCSSSCC-------BCCTTTTSCCCSCCCSSS-CCEEECSSSE
T ss_pred cccccCCCCCC---CCCEEecCCCCCeECCcCCCccCCCCCCcc-------ccccccCCCCcccCCccc-cceeeccCce
Confidence 56788876666 889998764 589 99999999 7886 357788777 8864410 147554 579
Q ss_pred ccc-CCCCCccCCCc------------cCCCCCCCCCCCCC--CCcCCCCCCCCcccC------CCcccccCCCccc--C
Q psy12394 283 QCP-CKENYAGDHCD------------TCAQGYYNFPTCSP--CECNAVGSLSDLCEV------DSGNCTCRNNFAG--R 339 (1873)
Q Consensus 283 ~C~-C~~g~~G~~Ce------------~C~~Gf~g~~~C~~--c~C~~~gs~~~~C~~------~~g~C~C~~G~~G--~ 339 (1873)
+|. |++||+|..|+ .|. .+.+|.. .+|.++ ++|.. .++.|.|++||+| .
T Consensus 71 ~C~~C~~Gy~G~~c~g~g~~~~~~dg~~C~----dideC~~~~~pC~~~----~~Cvnt~~~~~GsY~C~C~~Gy~GdG~ 142 (634)
T 1yo8_A 71 HCLPCPPRYRGNQPVGVGLEAAKTEKQVCE----PENPCKDKTHNCHKH----AECIYLGHFSDPMYKCECQTGYAGDGL 142 (634)
T ss_dssp EECCCCTTEEECCCEESSSHHHHSCCCCEE----ECCTTTTTCCCCCTT----EEEEECCTTCSSSEEEEECTTEEESSS
T ss_pred ecccCCCCcccCccccccccccccCCCccc----ccccccCCCcccccC----ccccccccccccceeeeccCCccccCc
Confidence 998 99999999986 132 1356763 467764 35543 3469999999998 7
Q ss_pred CCcc
Q psy12394 340 TCDS 343 (1873)
Q Consensus 340 ~Ce~ 343 (1873)
+|++
T Consensus 143 ~Ce~ 146 (634)
T 1yo8_A 143 ICGE 146 (634)
T ss_dssp SEEE
T ss_pred cccc
Confidence 8864
No 38
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*
Probab=97.84 E-value=9.3e-06 Score=104.48 Aligned_cols=111 Identities=23% Similarity=0.538 Sum_probs=79.2
Q ss_pred CCCCCCCcCCCCCCCCcccCC---Cccc-ccCCCccc--CCCccCCCCCcCCCCCCcCCCCC--CCCCc---eecCC--C
Q psy12394 306 PTCSPCECNAVGSLSDLCEVD---SGNC-TCRNNFAG--RTCDSCADGYYNYPRCTSCQCAF--HYATG---NCAEG--T 372 (1873)
Q Consensus 306 ~~C~~c~C~~~gs~~~~C~~~---~g~C-~C~~G~~G--~~Ce~C~~G~~g~~~C~~C~c~~--c~n~g---~C~~~--~ 372 (1873)
.+|...+|.+++ +|... +++| .|++||+| .+|+. ... |...| |.+++ +|... .
T Consensus 4 DeC~~nPC~~gg----~C~n~~~Gsy~C~~C~~GytGdg~~CeD-------iDE---C~~~p~~C~~gg~~~~CvNt~gs 69 (634)
T 1yo8_A 4 DGCLSNPCFPGA----QCSSFPDGSWSCGFCPVGFLGNGTHCED-------LDE---CALVPDICFSTSKVPRCVNTQPG 69 (634)
T ss_dssp CGGGGCCSCTTC----CEEECTTSCEEECCCCTTBCSCSSSCCB-------CCT---TTTSCCCSCCCSSSCCEEECSSS
T ss_pred cccCCCCCCCCC----EEecCCCCCeECCcCCCccCCCCCCccc-------ccc---ccCCCCcccCCccccceeeccCc
Confidence 457667787754 56443 3689 99999998 78863 123 44455 88888 89754 4
Q ss_pred Ceee-eCCCccCCCCc------------cCCCCccCCCCCCC--CCCCCCcEeeeec-cCCCCCeeeCCCCccc--CCCC
Q psy12394 373 GKCE-CRPEYTKPDCN------------SCAFGYFGYPNCEP--CKCHMNGTLDFYC-EPASGQQCPCKENYAG--DHCD 434 (1873)
Q Consensus 373 g~C~-C~~G~tG~~Ce------------~C~~g~~~~~~C~~--~~C~n~gtc~~~c-d~~~g~~C~C~~g~~G--~~Ce 434 (1873)
++|. |++||+|..|+ .|. .+++|.. .+|.++++|...- ....+|.|.|++||+| ..|+
T Consensus 70 Y~C~~C~~Gy~G~~c~g~g~~~~~~dg~~C~----dideC~~~~~pC~~~~~Cvnt~~~~~GsY~C~C~~Gy~GdG~~Ce 145 (634)
T 1yo8_A 70 FHCLPCPPRYRGNQPVGVGLEAAKTEKQVCE----PENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICG 145 (634)
T ss_dssp EEECCCCTTEEECCCEESSSHHHHSCCCCEE----ECCTTTTTCCCCCTTEEEEECCTTCSSSEEEEECTTEEESSSSEE
T ss_pred eecccCCCCcccCccccccccccccCCCccc----ccccccCCCcccccCccccccccccccceeeeccCCccccCcccc
Confidence 5999 99999999876 132 3678875 5999999985311 1126799999999999 6776
No 39
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Probab=97.81 E-value=1.5e-06 Score=92.47 Aligned_cols=49 Identities=20% Similarity=0.445 Sum_probs=33.0
Q ss_pred CeeeeCCCcc---CCCCccCCCCccCCCCCCC--CCCCCCcEeeeeccCCCCCeeeCCCCcccCC
Q psy12394 373 GKCECRPEYT---KPDCNSCAFGYFGYPNCEP--CKCHMNGTLDFYCEPASGQQCPCKENYAGDH 432 (1873)
Q Consensus 373 g~C~C~~G~t---G~~Ce~C~~g~~~~~~C~~--~~C~n~gtc~~~cd~~~g~~C~C~~g~~G~~ 432 (1873)
+.|.|++||+ |..|+. +++|.. .+|++ |+|. +...+|.|.|++||+|..
T Consensus 88 ~~C~C~~Gy~~~~g~~C~d-------ideC~~~~~~C~~-g~C~---n~~g~y~C~C~~Gy~g~~ 141 (147)
T 2w86_A 88 VDPICGKGYSRIKGTQCED-------IDECEVFPGVCKN-GLCV---NTRGSFKCQCPSGMTLDA 141 (147)
T ss_dssp CCTTTCTTEEEEETTEEEE-------CCHHHHSTTCSSS-SEEE---EETTEEEEECCTTCCBCT
T ss_pred CcccCCCccccCCCCccCc-------cccccCCCCCCCC-CEEE---CCCCCEEeeCCCCCccCC
Confidence 3566777774 677763 667764 34876 4774 445678899999998764
No 40
>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}
Probab=97.79 E-value=1.1e-05 Score=70.38 Aligned_cols=47 Identities=19% Similarity=0.349 Sum_probs=36.1
Q ss_pred CCCCccCCCCccCCCCCCCCCCCCCcEeeee--ccCCCCCeeeCCCCcccCCCCc
Q psy12394 383 KPDCNSCAFGYFGYPNCEPCKCHMNGTLDFY--CEPASGQQCPCKENYAGDHCDT 435 (1873)
Q Consensus 383 G~~Ce~C~~g~~~~~~C~~~~C~n~gtc~~~--cd~~~g~~C~C~~g~~G~~Ce~ 435 (1873)
|.+|+. .+++|.+.||+|+|+|... .+..++|.|.|++||+|++||.
T Consensus 1 G~~c~~------~~~eC~s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~G~~CE~ 49 (55)
T 3u7u_G 1 GTSHLV------KCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGDRCQN 49 (55)
T ss_dssp --CCEE------ECCSTTTTTSCTTCEEEEECCC--CCCEEEEECTTEESTTSCE
T ss_pred CCCCcc------cCCCCcCCCCCCCCCcCCCCccCCCCCEeEeCCCCCcCCCcCc
Confidence 455664 5789999999999998432 2567889999999999999984
No 41
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A
Probab=97.69 E-value=4.9e-06 Score=85.11 Aligned_cols=99 Identities=24% Similarity=0.524 Sum_probs=67.7
Q ss_pred CCCCCCCcCCCCCCCCcccCC---CcccccCCCcccCCCccCCCCCcCCCCCCc-CCCCCCCCCceecC-CCCeeeeCCC
Q psy12394 306 PTCSPCECNAVGSLSDLCEVD---SGNCTCRNNFAGRTCDSCADGYYNYPRCTS-CQCAFHYATGNCAE-GTGKCECRPE 380 (1873)
Q Consensus 306 ~~C~~c~C~~~gs~~~~C~~~---~g~C~C~~G~~G~~Ce~C~~G~~g~~~C~~-C~c~~c~n~g~C~~-~~g~C~C~~G 380 (1873)
++|...+|.+ +|.+. +++|.|++||+|..++. ..|.. |...+|. ++|.. ..++|.|++|
T Consensus 5 deC~~~pC~~------~C~~~~~g~y~C~C~~Gy~g~~~~~--------~~C~~~C~~~~C~--~~C~~~~~y~C~C~~G 68 (118)
T 1dx5_I 5 DPCFRANCEY------QCQPLDQTSYLCVCAEGFAPIPHEP--------HRCQMFCNQTACP--ADCDPNTQASCECPEG 68 (118)
T ss_dssp CGGGGCCCSS------EEEECSSSCEEEECCTTEEEETTEE--------EEEEECCCSSEEE--CEECTTSTTCEECCTT
T ss_pred ccCCCCCCCC------CCCCCCCCCEEeECCCCccccCCCC--------CccccccCCCCCC--CcccCCCCeEeECCCC
Confidence 4455555543 45433 57999999999986642 12221 3333443 56654 3469999999
Q ss_pred cc---CCCCccCCCCccCCCCCCC-CCCCCCcEeeeeccCCCCCeeeCCCCcccCC
Q psy12394 381 YT---KPDCNSCAFGYFGYPNCEP-CKCHMNGTLDFYCEPASGQQCPCKENYAGDH 432 (1873)
Q Consensus 381 ~t---G~~Ce~C~~g~~~~~~C~~-~~C~n~gtc~~~cd~~~g~~C~C~~g~~G~~ 432 (1873)
|+ |..|+. +++|.. .+| +++|. +...+|.|.|++||+|..
T Consensus 69 y~~~~g~~C~d-------ideC~~~~~C--~~~C~---n~~g~y~C~C~~G~~g~~ 112 (118)
T 1dx5_I 69 YILDDGFICTD-------IDECENGGFC--SGVCH---NLPGTFECICGPDSALAG 112 (118)
T ss_dssp EEEETTTEEEE-------CCHHHHCSSC--SSEEE---ECSSSEEEEECSSSSCEE
T ss_pred ccCCCCCcccc-------ccccCCCCCC--cCeEE---eCCCCEEEECCCCCccCC
Confidence 99 888863 677776 788 67874 556789999999999853
No 42
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=97.59 E-value=9.2e-06 Score=102.46 Aligned_cols=78 Identities=29% Similarity=0.744 Sum_probs=37.6
Q ss_pred eecCCCCCCCCCCccCCCCccCCCCCcccCCCCCCcCCccCCCCCcccCCCCccCCCCCCCCCCcCCCCCCccCCCCCCC
Q psy12394 573 SCLCKEGYTGARCDQCKAGYYGYPDCKLCGCSAVGSSSTACDVSGKCPCLVNFGGKTCSQCSPGFYQYPQCKACNCDSHG 652 (1873)
Q Consensus 573 ~C~C~~G~~G~~Ce~C~~g~~~~~~C~~c~C~~~Gt~~~~C~~~g~C~C~~G~~G~~Ce~C~~g~~g~~~C~~c~C~~~~ 652 (1873)
.+.|..+|.|..|+. ..|.. +|.| | +|...++|.|.+||+|..|++ +.|.+ +|.|
T Consensus 378 p~~C~~~~~g~~c~~--------~~C~~-~C~n-G----~C~~~~~C~C~~G~~G~~C~~--------~~C~~-~C~~-- 432 (463)
T 2wg3_C 378 PEECRATVQPAQTLT--------SECSR-LCRN-G----YCTPTGKCCCSPGWEGDFCRT--------AKCEP-ACRH-- 432 (463)
T ss_dssp CGGGCCCCCCCCCCC--------CHHHH-HCCS-E----EECTTSCEEECTTEESTTSCE--------ECC---------
T ss_pred cccCCCCCcCCCCcc--------ccccC-CCCC-C----ccCCCCeECCCCCcCCCcCCc--------CcCCC-CCCC--
Confidence 367888999998874 34543 5776 5 687778999999999999975 34555 7776
Q ss_pred CCCcccCCCcceecCCCCCCCCCcc
Q psy12394 653 NIGVSCDDDGKCQCEKNFGGDRCER 677 (1873)
Q Consensus 653 ~~gg~C~~~g~C~C~~g~~G~~Ce~ 677 (1873)
+|+|...++|.|++||+|.+||.
T Consensus 433 --~g~C~~~~~C~C~~G~~G~~C~~ 455 (463)
T 2wg3_C 433 --GGVCVRPNKCLCKKGYLGPQCEQ 455 (463)
T ss_dssp -------------------------
T ss_pred --CCEECCCCEEECCCCcccCCCCC
Confidence 78999878999999999999986
No 43
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A
Probab=97.58 E-value=1.1e-05 Score=82.60 Aligned_cols=99 Identities=24% Similarity=0.610 Sum_probs=67.9
Q ss_pred CCCCCCccCCCCCCCCCCeeecC-C--CceecCCCCcCCCCc--ccCCcccCCCCCCCCCCCCCCCCCceecCCCCCccc
Q psy12394 211 NETDVCQPCQCAFHYATGNCAEG-T--GKCECRPEYTKPDCN--SCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCP 285 (1873)
Q Consensus 211 ~~~~~C~~C~C~~~~n~g~C~~~-~--g~C~C~~G~~G~~Ce--~C~~g~~g~~~C~~c~C~~~gt~~~~C~~~~G~~C~ 285 (1873)
.++|+|.+-+|. + +|.+. . ++|.|++||+|..++ +|.. .|...+|. +.|....+|.|.
T Consensus 2 ~dideC~~~pC~---~--~C~~~~~g~y~C~C~~Gy~g~~~~~~~C~~------~C~~~~C~------~~C~~~~~y~C~ 64 (118)
T 1dx5_I 2 EPVDPCFRANCE---Y--QCQPLDQTSYLCVCAEGFAPIPHEPHRCQM------FCNQTACP------ADCDPNTQASCE 64 (118)
T ss_dssp CCCCGGGGCCCS---S--EEEECSSSCEEEECCTTEEEETTEEEEEEE------CCCSSEEE------CEECTTSTTCEE
T ss_pred CccccCCCCCCC---C--CCCCCCCCCEEeECCCCccccCCCCCcccc------ccCCCCCC------CcccCCCCeEeE
Confidence 467889877775 3 89877 4 499999999998664 2221 24444443 357666679999
Q ss_pred CCCCCc---cCCCccCCCCCCCCCCCCC-CCcCCCCCCCCcccC--CCcccccCCCcccC
Q psy12394 286 CKENYA---GDHCDTCAQGYYNFPTCSP-CECNAVGSLSDLCEV--DSGNCTCRNNFAGR 339 (1873)
Q Consensus 286 C~~g~~---G~~Ce~C~~Gf~g~~~C~~-c~C~~~gs~~~~C~~--~~g~C~C~~G~~G~ 339 (1873)
|++||+ |..|+. +++|.. .+| +.+|.+ .++.|.|++||+|.
T Consensus 65 C~~Gy~~~~g~~C~d-------ideC~~~~~C------~~~C~n~~g~y~C~C~~G~~g~ 111 (118)
T 1dx5_I 65 CPEGYILDDGFICTD-------IDECENGGFC------SGVCHNLPGTFECICGPDSALA 111 (118)
T ss_dssp CCTTEEEETTTEEEE-------CCHHHHCSSC------SSEEEECSSSEEEEECSSSSCE
T ss_pred CCCCccCCCCCcccc-------ccccCCCCCC------cCeEEeCCCCEEEECCCCCccC
Confidence 999999 888852 355654 445 134543 35689999999874
No 44
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...
Probab=97.57 E-value=4e-05 Score=80.97 Aligned_cols=76 Identities=25% Similarity=0.671 Sum_probs=57.8
Q ss_pred CCCCCccCCCCCCCCCCeeecCCC--ceecCCCCcCCCCcccCCcccCCCCCCCCCCCCCCCCCceecCC-C-CCcccCC
Q psy12394 212 ETDVCQPCQCAFHYATGNCAEGTG--KCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPA-S-GQQCPCK 287 (1873)
Q Consensus 212 ~~~~C~~C~C~~~~n~g~C~~~~g--~C~C~~G~~G~~Ce~C~~g~~g~~~C~~c~C~~~gt~~~~C~~~-~-G~~C~C~ 287 (1873)
++++|.+-+|. ++|+|.+..+ +|.|++||+|..|+. .++.|.+++|.+++-. ..|... . +|.|.|+
T Consensus 46 did~C~~~pC~---n~g~C~~~~g~y~C~C~~G~~G~~C~~------~~~~c~~c~~~~~~C~-~~C~~~~g~~y~C~C~ 115 (142)
T 2c4f_L 46 DGDQCASSPCQ---NGGSCKDQLQSYICFCLPAFEGRNCET------HKDDQLICVNENGGCE-QYCSDHTGTKRSCRCH 115 (142)
T ss_dssp TCCGGGGCCCC---TTCEEEEETTEEEEECCTTEESTTSCE------EGGGCCSTTTGGGGCS-SEEECCTTSCCEEECC
T ss_pred ccCcCcCCCcC---CCCEEeCCCCCEEeeCCCCccCCcccc------CccccccccCCCCCcc-CEeECCCCCCEEEECC
Confidence 67888876666 8999987654 999999999999986 4456666777644311 267654 4 7999999
Q ss_pred CCCc----cCCCcc
Q psy12394 288 ENYA----GDHCDT 297 (1873)
Q Consensus 288 ~g~~----G~~Ce~ 297 (1873)
+||+ |.+|+.
T Consensus 116 ~Gy~l~~dG~~C~~ 129 (142)
T 2c4f_L 116 EGYSLLADGVSCTP 129 (142)
T ss_dssp TTEEECTTSSCEEE
T ss_pred CCceECCCCCCCCC
Confidence 9999 888874
No 45
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...
Probab=97.50 E-value=3.8e-05 Score=81.11 Aligned_cols=70 Identities=21% Similarity=0.563 Sum_probs=55.6
Q ss_pred cCCCCCCCCCceecCC--CCeeeeCCCccCCCCccCCCCccCCCCCCCCCCCCCc---EeeeeccCCC-CCeeeCCCCcc
Q psy12394 356 SCQCAFHYATGNCAEG--TGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNG---TLDFYCEPAS-GQQCPCKENYA 429 (1873)
Q Consensus 356 ~C~c~~c~n~g~C~~~--~g~C~C~~G~tG~~Ce~C~~g~~~~~~C~~~~C~n~g---tc~~~cd~~~-g~~C~C~~g~~ 429 (1873)
.|..+||.|+|+|.+. .++|.|++||+|..|+. .++.|.+++|.+++ +|. +... +|.|.|++||+
T Consensus 49 ~C~~~pC~n~g~C~~~~g~y~C~C~~G~~G~~C~~------~~~~c~~c~~~~~~C~~~C~---~~~g~~y~C~C~~Gy~ 119 (142)
T 2c4f_L 49 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCET------HKDDQLICVNENGGCEQYCS---DHTGTKRSCRCHEGYS 119 (142)
T ss_dssp GGGGCCCCTTCEEEEETTEEEEECCTTEESTTSCE------EGGGCCSTTTGGGGCSSEEE---CCTTSCCEEECCTTEE
T ss_pred cCcCCCcCCCCEEeCCCCCEEeeCCCCccCCcccc------CccccccccCCCCCccCEeE---CCCCCCEEEECCCCce
Confidence 3666899999999754 45999999999999984 24566667787777 763 4455 79999999999
Q ss_pred ----cCCCC
Q psy12394 430 ----GDHCD 434 (1873)
Q Consensus 430 ----G~~Ce 434 (1873)
|..|+
T Consensus 120 l~~dG~~C~ 128 (142)
T 2c4f_L 120 LLADGVSCT 128 (142)
T ss_dssp ECTTSSCEE
T ss_pred ECCCCCCCC
Confidence 88886
No 46
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=97.37 E-value=3.6e-05 Score=97.06 Aligned_cols=77 Identities=30% Similarity=0.738 Sum_probs=36.3
Q ss_pred ccCCCCccCCCCCCCCCCcCCCCCCccCCCCCCCCCCcccCCCcceecCCCCCCCCCcccCCCccCCCCcccCCCCCCCC
Q psy12394 619 CPCLVNFGGKTCSQCSPGFYQYPQCKACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCERCKEGLYNFPICEACNCDSHGN 698 (1873)
Q Consensus 619 C~C~~G~~G~~Ce~C~~g~~g~~~C~~c~C~~~~~~gg~C~~~g~C~C~~g~~G~~Ce~C~~g~~g~~~C~~C~C~~~g~ 698 (1873)
+.|..+|.|..|+. +.|.. +|.| |+|...++|.|++||+|.+|+. +.|.+ +|.+
T Consensus 379 ~~C~~~~~g~~c~~--------~~C~~-~C~n-----G~C~~~~~C~C~~G~~G~~C~~--------~~C~~-~C~~--- 432 (463)
T 2wg3_C 379 EECRATVQPAQTLT--------SECSR-LCRN-----GYCTPTGKCCCSPGWEGDFCRT--------AKCEP-ACRH--- 432 (463)
T ss_dssp GGGCCCCCCCCCCC--------CHHHH-HCCS-----EEECTTSCEEECTTEESTTSCE--------ECC----------
T ss_pred ccCCCCCcCCCCcc--------ccccC-CCCC-----CccCCCCeECCCCCcCCCcCCc--------CcCCC-CCCC---
Confidence 46777899998875 34543 4664 6899878999999999999974 23444 6765
Q ss_pred CCcccCCCCceeeCCCcccCCCCc
Q psy12394 699 IGVSCDDDGKCQCEKNFGGDRCER 722 (1873)
Q Consensus 699 ~~~~C~~~g~C~C~~g~~G~~Ce~ 722 (1873)
+++|...++|.|.+||+|.+|+.
T Consensus 433 -~g~C~~~~~C~C~~G~~G~~C~~ 455 (463)
T 2wg3_C 433 -GGVCVRPNKCLCKKGYLGPQCEQ 455 (463)
T ss_dssp ------------------------
T ss_pred -CCEECCCCEEECCCCcccCCCCC
Confidence 56788878999999999999975
No 47
>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Probab=97.27 E-value=0.00016 Score=76.66 Aligned_cols=67 Identities=19% Similarity=0.541 Sum_probs=51.9
Q ss_pred cCCCCCCCCCceecCC--CCeeeeCCCccCCCCccCCCCccCCCCCCC--CCCCCCcEe-eeeccCCCCCeeeCCCCcc-
Q psy12394 356 SCQCAFHYATGNCAEG--TGKCECRPEYTKPDCNSCAFGYFGYPNCEP--CKCHMNGTL-DFYCEPASGQQCPCKENYA- 429 (1873)
Q Consensus 356 ~C~c~~c~n~g~C~~~--~g~C~C~~G~tG~~Ce~C~~g~~~~~~C~~--~~C~n~gtc-~~~cd~~~g~~C~C~~g~~- 429 (1873)
.|..+||.|+|+|.+. .++|.|++||+|..|+. .+.|.. .+|.+ +| . +...+|.|.|++||+
T Consensus 50 eC~~~pC~n~g~C~~~~~~y~C~C~~G~~G~~C~~-------~deC~~~~~~C~~--~C~~---n~~g~y~C~C~~Gy~l 117 (146)
T 1x7a_L 50 QCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCEL-------DATCNIKNGRCKQ--FCKT---GADSKVLCSCTTGYRL 117 (146)
T ss_dssp CCSSCSSCTTCEEEECSSCEEEECCSSEESTTTCE-------ECCTTSGGGSCSS--BCCC---CSSSCCCCBCCTTEEE
T ss_pred cCCCCCCCCCCEeECCCCCEEEecCCCCcCCcCCC-------CccccCCCCCCcC--CCCC---CCCCCEEeEcCCCcEe
Confidence 3667899999999754 45999999999999985 366664 35655 54 2 345679999999999
Q ss_pred ---cCCCC
Q psy12394 430 ---GDHCD 434 (1873)
Q Consensus 430 ---G~~Ce 434 (1873)
|..|+
T Consensus 118 ~~dG~~C~ 125 (146)
T 1x7a_L 118 APDQKSCK 125 (146)
T ss_dssp CTTSSSEE
T ss_pred CCCCCcCC
Confidence 88887
No 48
>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Probab=97.19 E-value=0.00026 Score=75.11 Aligned_cols=70 Identities=26% Similarity=0.770 Sum_probs=50.7
Q ss_pred CCCCCccCCCCCCCCCCeeecCCC--ceecCCCCcCCCCcccCCcccCCCCCCC--CCCCCCCCCCcee-cCC-CCCccc
Q psy12394 212 ETDVCQPCQCAFHYATGNCAEGTG--KCECRPEYTKPDCNSCAFGYFGYPNCEP--CKCHMNGTLDFYC-EPA-SGQQCP 285 (1873)
Q Consensus 212 ~~~~C~~C~C~~~~n~g~C~~~~g--~C~C~~G~~G~~Ce~C~~g~~g~~~C~~--c~C~~~gt~~~~C-~~~-~G~~C~ 285 (1873)
++++|.+-+|. ++|+|.+..+ +|.|++||+|..|+. .+.|.. .+|.+ .| ... .+|.|.
T Consensus 47 dideC~~~pC~---n~g~C~~~~~~y~C~C~~G~~G~~C~~-------~deC~~~~~~C~~------~C~~n~~g~y~C~ 110 (146)
T 1x7a_L 47 DGDQCEPNPCL---NGGLCKDDINSYECWCQVGFEGKNCEL-------DATCNIKNGRCKQ------FCKTGADSKVLCS 110 (146)
T ss_dssp ---CCSSCSSC---TTCEEEECSSCEEEECCSSEESTTTCE-------ECCTTSGGGSCSS------BCCCCSSSCCCCB
T ss_pred CcCcCCCCCCC---CCCEeECCCCCEEEecCCCCcCCcCCC-------CccccCCCCCCcC------CCCCCCCCCEEeE
Confidence 67888876666 8999988654 999999999999985 245553 34542 46 433 569999
Q ss_pred CCCCCc----cCCCcc
Q psy12394 286 CKENYA----GDHCDT 297 (1873)
Q Consensus 286 C~~g~~----G~~Ce~ 297 (1873)
|++||+ |..|+.
T Consensus 111 C~~Gy~l~~dG~~C~~ 126 (146)
T 1x7a_L 111 CTTGYRLAPDQKSCKP 126 (146)
T ss_dssp CCTTEEECTTSSSEEE
T ss_pred cCCCcEeCCCCCcCCC
Confidence 999999 888874
No 49
>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}
Probab=97.15 E-value=0.00014 Score=63.43 Aligned_cols=43 Identities=23% Similarity=0.504 Sum_probs=33.2
Q ss_pred CCCCcccCCcccCCCCCCCCCCCCCCCCCcee------cCCCCCcccCCCCCccCCCcc
Q psy12394 245 KPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYC------EPASGQQCPCKENYAGDHCDT 297 (1873)
Q Consensus 245 G~~Ce~C~~g~~g~~~C~~c~C~~~gt~~~~C------~~~~G~~C~C~~g~~G~~Ce~ 297 (1873)
|.+|+. ..++|.+.||.|+| +| +..++|+|.|++||+|.+||.
T Consensus 1 G~~c~~------~~~eC~s~pC~NgG----tC~~~~~~d~~~~y~C~C~~g~~G~~CE~ 49 (55)
T 3u7u_G 1 GTSHLV------KCAEKEKTFCVNGG----ECFMVKDLSNPSRYLCKCPNEFTGDRCQN 49 (55)
T ss_dssp --CCEE------ECCSTTTTTSCTTC----EEEEECCC--CCCEEEEECTTEESTTSCE
T ss_pred CCCCcc------cCCCCcCCCCCCCC----CcCCCCccCCCCCEeEeCCCCCcCCCcCc
Confidence 556766 67899999999655 57 345789999999999999995
No 50
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI, LE-domain, N neuronal cell adhesion molecule, netrin G ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens} PDB: 3zyg_A* 3zyi_B*
Probab=97.09 E-value=0.00012 Score=86.82 Aligned_cols=45 Identities=33% Similarity=0.805 Sum_probs=36.8
Q ss_pred CCCCCCCCCccccChhhhcccccccccCccCCCeecCCCCCCCCCCCCcccCCCccccCCCCCCC
Q psy12394 1737 ACNCHGHADKCVYDPMVDEKRLSVDIQGNYEGGGVCQECRDNTEGINCHQCVAGYYRPYGKHLNE 1801 (1873)
Q Consensus 1737 ~c~c~g~~~~c~~~~~~~~~~~~c~~~~~~~~~g~c~~C~~nt~G~~C~~C~~g~~~~~~~~~~~ 1801 (1873)
.|.||||++.|..+ .+.++| +|+|||+|.+||+|+++|| ++|-..
T Consensus 269 ~C~CnGHA~~C~~~----------------~g~~~C-~C~HnT~G~~Ce~C~p~y~---~~pw~p 313 (338)
T 3tbd_A 269 RCKCNLHANLCSMR----------------EGSLQC-ECEHNTTGPDCGKCKKNFR---TRSWRA 313 (338)
T ss_dssp EECCTTBCSCEEEE----------------TTEEEE-CCCTTEESTTSCEECTTCB---SSCCCC
T ss_pred cccccCCcCccCCC----------------CCCcee-cCCCCCCCCCCcccCcccc---CCCCCC
Confidence 69999999997544 234689 7999999999999999999 655443
No 51
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Probab=97.05 E-value=3.3e-05 Score=82.10 Aligned_cols=126 Identities=21% Similarity=0.379 Sum_probs=71.1
Q ss_pred CCCCccCCCCCCCCCCcccCC---CcceecCCCCCCCCCcccCCCccCCCCcccCCCCCCCCCCcccCCCCceeeCCCcc
Q psy12394 640 YPQCKACNCDSHGNIGVSCDD---DGKCQCEKNFGGDRCERCKEGLYNFPICEACNCDSHGNIGVSCDDDGKCQCEKNFG 716 (1873)
Q Consensus 640 ~~~C~~c~C~~~~~~gg~C~~---~g~C~C~~g~~G~~Ce~C~~g~~g~~~C~~C~C~~~g~~~~~C~~~g~C~C~~g~~ 716 (1873)
+++|...+|.+ ++|.+ +++|.|++||+|..+.. .|.+.....|..+|.
T Consensus 4 ideC~~~pC~n-----g~C~n~~g~y~C~C~~G~~g~~~~~------------------------~C~~~~~~~C~~~~~ 54 (147)
T 2w86_A 4 IDECESSPCIN-----GVCKNSPGSFICECSSESTLDPTKT------------------------ICIETIKGTCWQTVI 54 (147)
T ss_dssp CCGGGGCCSBT-----SEEEEETTEEEEECCTTEEECTTSS------------------------BEEECCCEEEEEEEE
T ss_pred CccCcCCCCCC-----CEeECCCCCEEeECCCCcccCCCCC------------------------eecCCCCCcccCCCC
Confidence 45677777865 58987 56899999999876532 232222345777788
Q ss_pred cCCCCc----CCCCCccCCCCcCCCCCCCCCccCccccccCCCCCceecCCCcc---cCCccccCCCCcCCCCCCCCCCC
Q psy12394 717 GDRCER----CKEGLYNFPICEECNCNPEGVLKTFAGCGSLPAGELCECKPKVQ---GRICDECRPLYWNLKASNPDGCE 789 (1873)
Q Consensus 717 G~~Ce~----C~~g~~g~p~C~~C~C~~~Gs~~~~~~C~~~~~~g~C~C~~g~~---G~~C~~C~~g~~g~~~~~~~~C~ 789 (1873)
|..|+. |.... .| +...|... ...|.. -.+.|.|++||+ |..|+ +++.|.
T Consensus 55 g~~C~~~~~~c~~~~----~C----~~~~g~~~-g~~C~~--c~~~C~C~~Gy~~~~g~~C~------------dideC~ 111 (147)
T 2w86_A 55 DGRCEININGATLKS----QC----CSSLGAAW-GSPCTL--CQVDPICGKGYSRIKGTQCE------------DIDECE 111 (147)
T ss_dssp TTEEEEEEEEEECHH----HH----HTTTCSEE-TTTTEE--CCCCTTTCTTEEEEETTEEE------------ECCHHH
T ss_pred CCccccCCCccccCC----cc----ccCcCccc-CCCccc--CCCcccCCCccccCCCCccC------------cccccc
Confidence 887764 21100 00 11111100 011221 126788999995 77764 245565
Q ss_pred cC--cCCCCCcccCCcccCCCCCceecCCCCccCC
Q psy12394 790 DC--DCYTLGTIGGIKNCNPKSGQCVCKATAMNRK 822 (1873)
Q Consensus 790 ~c--~C~~~Gt~~~~~~C~~~tg~C~C~~g~~G~~ 822 (1873)
.. .|.+ |++.+. ..+++|.|++||+|..
T Consensus 112 ~~~~~C~~-g~C~n~----~g~y~C~C~~Gy~g~~ 141 (147)
T 2w86_A 112 VFPGVCKN-GLCVNT----RGSFKCQCPSGMTLDA 141 (147)
T ss_dssp HSTTCSSS-SEEEEE----TTEEEEECCTTCCBCT
T ss_pred CCCCCCCC-CEEECC----CCCEEeeCCCCCccCC
Confidence 32 3654 344322 2456899999999764
No 52
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Probab=97.04 E-value=3.7e-05 Score=83.08 Aligned_cols=131 Identities=20% Similarity=0.369 Sum_probs=75.1
Q ss_pred CCCc-cCCCCCCCCCCcccCC---CcceecCCCCC----CCCCcccCCCccCCCCccc--CCCCCCCCCCcccCC-----
Q psy12394 641 PQCK-ACNCDSHGNIGVSCDD---DGKCQCEKNFG----GDRCERCKEGLYNFPICEA--CNCDSHGNIGVSCDD----- 705 (1873)
Q Consensus 641 ~~C~-~c~C~~~~~~gg~C~~---~g~C~C~~g~~----G~~Ce~C~~g~~g~~~C~~--C~C~~~g~~~~~C~~----- 705 (1873)
++|. +.+|.+ ++|.+ +++|.|++||+ |.+|+.-.. ..|.. .+|.. ..++.|.+
T Consensus 4 deC~~~~~C~~-----~~C~n~~gsy~C~C~~Gy~~~~~g~~C~d~~~-----~~C~~~~~~c~~--~~~~~C~~~~~~~ 71 (162)
T 1uzk_A 4 NECLDPTTCIS-----GNCVNTPGSYICDCPPDFELNPTRVGCVDTRS-----GNCYLDIRPRGD--NGDTACSNEIGVG 71 (162)
T ss_dssp CGGGSTTSSBT-----SEEEEETTEEEEECCTTCEECTTSSBEECCCC-----EEEEEEC------------CEEEEEEE
T ss_pred ccCCCCCCCCC-----CEeECCCCCEEEeCCCCCeECCCCCcccCCCC-----CcccCCCcccCC--CCCCcccCCcCCc
Confidence 4554 355643 68887 67999999998 888873111 01211 11110 01345543
Q ss_pred --CCceeeCCCcc-cCCCCcCCCCCccCCCCcCCCCCCCCCccCccccccCCCCCceecCC--CcccCCccccCCCCcCC
Q psy12394 706 --DGKCQCEKNFG-GDRCERCKEGLYNFPICEECNCNPEGVLKTFAGCGSLPAGELCECKP--KVQGRICDECRPLYWNL 780 (1873)
Q Consensus 706 --~g~C~C~~g~~-G~~Ce~C~~g~~g~p~C~~C~C~~~Gs~~~~~~C~~~~~~g~C~C~~--g~~G~~C~~C~~g~~g~ 780 (1873)
.++|.|++||+ |..|+.|... ..+++.|.|++ ||+|..-. .
T Consensus 72 ~~~~~C~C~~G~~~~~~C~~C~~~--------------------------~~~~y~C~C~~g~G~~~~~~~--------~ 117 (162)
T 1uzk_A 72 VSKASCCCSLGKAWGTPCEMCPAV--------------------------NTSEYKILCPGGEGFRPNPIT--------V 117 (162)
T ss_dssp ECHHHHHTTTCCEETTTTEECCCT--------------------------TSHHHHHHCTTCTTEEECTTT--------C
T ss_pred ccCceeeCCCCCCcCCCcccCCCC--------------------------CCCCceeECCCCCCcccCCCC--------C
Confidence 36789999998 7777654321 11347899988 89886311 1
Q ss_pred CCCCCCCCCc--CcCCCCCcccCCcccCCCCCceecCCCCccCC
Q psy12394 781 KASNPDGCED--CDCYTLGTIGGIKNCNPKSGQCVCKATAMNRK 822 (1873)
Q Consensus 781 ~~~~~~~C~~--c~C~~~Gt~~~~~~C~~~tg~C~C~~g~~G~~ 822 (1873)
.+.++++|.. .+|.+ |++.+. ..+++|.|++||+|..
T Consensus 118 ~c~dideC~~~~~~C~~-g~C~n~----~gsy~C~C~~Gy~g~~ 156 (162)
T 1uzk_A 118 ILEDIDECQELPGLCQG-GKCINT----FGSFQCRCPTGYYLNE 156 (162)
T ss_dssp CEEECCHHHHCGGGGBT-SEEEEC----SSCEEEECCTTCCBCT
T ss_pred ccCccccccCCCCCcCC-CEeEcC----CCCEEeeCCCCccCCC
Confidence 2335666754 34654 454332 2457899999999864
No 53
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A
Probab=96.98 E-value=0.00046 Score=65.63 Aligned_cols=61 Identities=25% Similarity=0.599 Sum_probs=48.3
Q ss_pred CCCCCCceecCC--CCeeeeCCCcc--CCCCccCCCCccCCCCCC-CCCCCCCcEeeeeccCCCCCeeeCCCCcccCC
Q psy12394 360 AFHYATGNCAEG--TGKCECRPEYT--KPDCNSCAFGYFGYPNCE-PCKCHMNGTLDFYCEPASGQQCPCKENYAGDH 432 (1873)
Q Consensus 360 ~~c~n~g~C~~~--~g~C~C~~G~t--G~~Ce~C~~g~~~~~~C~-~~~C~n~gtc~~~cd~~~g~~C~C~~g~~G~~ 432 (1873)
+||.+ ++|... .++|.|++||+ |..|+. +++|. +.+|.| ++|. +...+|.|.|++||+|..
T Consensus 12 ~~C~~-g~C~n~~g~y~C~C~~Gy~~~g~~C~d-------ideC~~~~~C~~-~~C~---n~~g~y~C~C~~G~~g~~ 77 (82)
T 1emn_A 12 DVCKH-GQCINTDGSYRCECPFGYILAGNECVD-------TDECSVGNPCGN-GTCK---NVIGGFECTCEEGFEPGP 77 (82)
T ss_dssp TSCSS-SEECCCSSCCCEECCTTEEEETTEEEE-------CCGGGTCCTTSS-SCEE---ECSSSEEECCSSSSCCCS
T ss_pred CCcCC-CEEEecCCCEEEECCCCeECCCCccCC-------cccccCCCCCCC-CEeE---CCCCCEEeECCCCeEeCC
Confidence 57765 788754 46999999997 888874 67886 678987 5874 556779999999999864
No 54
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Probab=96.95 E-value=0.00014 Score=80.49 Aligned_cols=69 Identities=22% Similarity=0.572 Sum_probs=25.2
Q ss_pred cCCCCCCCCCceecCC--CCeeeeCCCccCCCCccCCCCccCC-CCCCC--CCCCCCcEeeeeccCCCCCeeeCCCCcc-
Q psy12394 356 SCQCAFHYATGNCAEG--TGKCECRPEYTKPDCNSCAFGYFGY-PNCEP--CKCHMNGTLDFYCEPASGQQCPCKENYA- 429 (1873)
Q Consensus 356 ~C~c~~c~n~g~C~~~--~g~C~C~~G~tG~~Ce~C~~g~~~~-~~C~~--~~C~n~gtc~~~cd~~~g~~C~C~~g~~- 429 (1873)
.|..+||.|+|+|... .+.|.|++||+|..|+. .+ +.|.. .+|.+ +|. +...+|.|.|++||+
T Consensus 44 eC~~~pC~ngg~C~n~~g~y~C~C~~Gf~G~~Ce~------~i~deC~~~~~~C~~--~C~---n~~gsy~C~C~~Gy~l 112 (195)
T 1nfu_B 44 QCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL------FTRKLCSLDNGDCDQ--FCH---EEQNSVVCSCARGYTL 112 (195)
T ss_dssp -------------------------------------------CCGGGTGGGGCSS--EEE---EETTEEEEECCTTEEE
T ss_pred ccCCCCCCCCCEeECCCCCeeEeCCCCceeccccc------cccccccCCCCCCCC--EeE---CCCCCeEEECCCCcee
Confidence 3667899999999754 46999999999999984 23 55765 46765 763 445679999999999
Q ss_pred ---cCCCCc
Q psy12394 430 ---GDHCDT 435 (1873)
Q Consensus 430 ---G~~Ce~ 435 (1873)
|..|+.
T Consensus 113 ~~dG~~C~~ 121 (195)
T 1nfu_B 113 ADNGKACIP 121 (195)
T ss_dssp CTTSSCEEE
T ss_pred CCCCCcccc
Confidence 999973
No 55
>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*
Probab=96.94 E-value=0.00054 Score=69.41 Aligned_cols=98 Identities=15% Similarity=0.261 Sum_probs=50.9
Q ss_pred ccCCCCCCCCC----CCCCCCCCceecCC-CCCcccCCCCCccCCCccCCCCCCCCCCCCCCCcCCCCCCCCcccCC--C
Q psy12394 255 YFGYPNCEPCK----CHMNGTLDFYCEPA-SGQQCPCKENYAGDHCDTCAQGYYNFPTCSPCECNAVGSLSDLCEVD--S 327 (1873)
Q Consensus 255 ~~g~~~C~~c~----C~~~gt~~~~C~~~-~G~~C~C~~g~~G~~Ce~C~~Gf~g~~~C~~c~C~~~gs~~~~C~~~--~ 327 (1873)
|.+.+.|...| |.....+++.|... .+|+|.|++||+|..|+.-.. ..+|.. .+++ +..+|.+. +
T Consensus 3 ~~d~d~C~~~p~~~~C~~~C~~~g~C~~~~~~y~C~C~~G~~G~~C~~~~~----~~~C~~---~~~~-C~~~C~n~~g~ 74 (114)
T 1aut_L 3 HVDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVS----FLNCSL---DNGG-CTHYCLEEVGW 74 (114)
T ss_dssp -----CCCCCSSCCSSSSTTTTSEEECCCSSCCCEEECTTEESTTSCEECC----SSSSSS---GGGG-CSSEEEECSSS
T ss_pred ceecccccCCCccccccccCCCcCCCCCCCCCcEeeCCCCCcCCCcCcCCc----CCcCcC---CCCC-CCCEeECCCCC
Confidence 44566777777 22222244568654 569999999999999985110 013432 1111 12255443 4
Q ss_pred cccccCCCcccCCCccCCCCCcCCCCCCcCCCCCCCCCceec
Q psy12394 328 GNCTCRNNFAGRTCDSCADGYYNYPRCTSCQCAFHYATGNCA 369 (1873)
Q Consensus 328 g~C~C~~G~~G~~Ce~C~~G~~g~~~C~~C~c~~c~n~g~C~ 369 (1873)
+.|.|++||+|....+ .|....-.||.+++.|.
T Consensus 75 y~C~C~~G~~~~~~g~---------~C~~~~~~pC~~~~~~i 107 (114)
T 1aut_L 75 RRCSCAPGYKLGDDLL---------QCHPAVKFPCGRPWKRM 107 (114)
T ss_dssp EEEECCTTEEECTTSS---------CEEECSSSCTTCCC---
T ss_pred EEeECCCCeeECCCCC---------ccCcCcccCCCCCCccC
Confidence 6899999999644322 23333334566665554
No 56
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Probab=96.93 E-value=0.00014 Score=80.44 Aligned_cols=71 Identities=24% Similarity=0.732 Sum_probs=22.8
Q ss_pred CCCCCccCCCCCCCCCCeeecCC--CceecCCCCcCCCCcccCCcccCC-CCCCC--CCCCCCCCCCceecCC-CCCccc
Q psy12394 212 ETDVCQPCQCAFHYATGNCAEGT--GKCECRPEYTKPDCNSCAFGYFGY-PNCEP--CKCHMNGTLDFYCEPA-SGQQCP 285 (1873)
Q Consensus 212 ~~~~C~~C~C~~~~n~g~C~~~~--g~C~C~~G~~G~~Ce~C~~g~~g~-~~C~~--c~C~~~gt~~~~C~~~-~G~~C~ 285 (1873)
++++|.+.+|. ++|+|.+.. +.|.|++||+|..|+. .+ +.|.. .+|.+ .|... .+|.|.
T Consensus 41 dideC~~~pC~---ngg~C~n~~g~y~C~C~~Gf~G~~Ce~------~i~deC~~~~~~C~~------~C~n~~gsy~C~ 105 (195)
T 1nfu_B 41 DGDQCETSPCQ---NQGKCKDGLGEYTCTCLEGFEGKNCEL------FTRKLCSLDNGDCDQ------FCHEEQNSVVCS 105 (195)
T ss_dssp -------------------------------------------------CCGGGTGGGGCSS------EEEEETTEEEEE
T ss_pred CCcccCCCCCC---CCCEeECCCCCeeEeCCCCceeccccc------cccccccCCCCCCCC------EeECCCCCeEEE
Confidence 67888876666 899998764 5999999999999985 33 44654 35542 56544 459999
Q ss_pred CCCCCc----cCCCcc
Q psy12394 286 CKENYA----GDHCDT 297 (1873)
Q Consensus 286 C~~g~~----G~~Ce~ 297 (1873)
|++||+ |..|+.
T Consensus 106 C~~Gy~l~~dG~~C~~ 121 (195)
T 1nfu_B 106 CARGYTLADNGKACIP 121 (195)
T ss_dssp CCTTEEECTTSSCEEE
T ss_pred CCCCceeCCCCCcccc
Confidence 999999 888874
No 57
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Probab=96.85 E-value=0.00057 Score=55.23 Aligned_cols=37 Identities=22% Similarity=0.614 Sum_probs=31.9
Q ss_pred CCCCCCCCCCCCCcEeeeeccCCCCCeeeCCCCcccCCCC
Q psy12394 395 GYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCD 434 (1873)
Q Consensus 395 ~~~~C~~~~C~n~gtc~~~cd~~~g~~C~C~~g~~G~~Ce 434 (1873)
+++.|.+.||.|+|+|. +...+|.|.|++||+|.+|+
T Consensus 2 d~d~C~~~pC~ngg~C~---~~~~~~~C~C~~G~~G~~Ce 38 (39)
T 1edm_B 2 DGDQCESNPCLNGGSCK---DDINSYECWCPFGFEGKNCE 38 (39)
T ss_dssp CCCTTTTCCCCTTCEEE---EETTEEEEECCTTCCSTTSC
T ss_pred ccccCCCCCCCCCCEeE---cCCCceEeECCCCCcCCccC
Confidence 46789999999999985 44667899999999999997
No 58
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Probab=96.79 E-value=0.00023 Score=74.33 Aligned_cols=68 Identities=22% Similarity=0.579 Sum_probs=24.0
Q ss_pred cCCCCCCCCCceecCC--CCeeeeCCCccCCCCccCCCCccCC-CCCCC--CCCCCCcEeeeeccCCCCCeeeCCCCcc-
Q psy12394 356 SCQCAFHYATGNCAEG--TGKCECRPEYTKPDCNSCAFGYFGY-PNCEP--CKCHMNGTLDFYCEPASGQQCPCKENYA- 429 (1873)
Q Consensus 356 ~C~c~~c~n~g~C~~~--~g~C~C~~G~tG~~Ce~C~~g~~~~-~~C~~--~~C~n~gtc~~~cd~~~g~~C~C~~g~~- 429 (1873)
.|..+||.|+|+|... .++|.|++||+|..|+. .+ +.|.. .+|.+ +|. +...+|.|.|++||+
T Consensus 44 ~C~~~pC~n~g~C~~~~~~y~C~C~~G~~G~~C~~------~i~d~C~~~~~~C~~--~C~---~~~g~y~C~C~~Gy~l 112 (134)
T 2vh0_B 44 QCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL------FTRKLCSLDNGDCDQ--FCH---EEQNSVVCSCARGYTL 112 (134)
T ss_dssp -------------------------------------------CCGGGTGGGGCSS--EEE---EETTEEEEECCTTEEE
T ss_pred cCCCCCCCCcCCcccCCCCEEeeCCCCccCCcccc------CCCCccccCCCCCCC--EeE---CCCCCEEEECCCCcEE
Confidence 3666889999999754 46999999999999984 23 55654 45665 663 345678999999999
Q ss_pred ---cCCCC
Q psy12394 430 ---GDHCD 434 (1873)
Q Consensus 430 ---G~~Ce 434 (1873)
|..|+
T Consensus 113 ~~~g~~C~ 120 (134)
T 2vh0_B 113 ADNGKACI 120 (134)
T ss_dssp CTTSSCEE
T ss_pred CCCCCccC
Confidence 88886
No 59
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}
Probab=96.79 E-value=0.0012 Score=79.07 Aligned_cols=67 Identities=21% Similarity=0.569 Sum_probs=54.6
Q ss_pred CcCCCCCCCCCceecCC--CCeeeeCCCccCCCCccCCCCccCCCCCCC---CCCCCCcEeeeeccCCCCCeeeCCCCcc
Q psy12394 355 TSCQCAFHYATGNCAEG--TGKCECRPEYTKPDCNSCAFGYFGYPNCEP---CKCHMNGTLDFYCEPASGQQCPCKENYA 429 (1873)
Q Consensus 355 ~~C~c~~c~n~g~C~~~--~g~C~C~~G~tG~~Ce~C~~g~~~~~~C~~---~~C~n~gtc~~~cd~~~g~~C~C~~g~~ 429 (1873)
.+|..+||.|+++|.+. .+.|.|++||+|..|+. ++++|.. .+|.+ +|. +...+|.|.|++||+
T Consensus 6 ~~C~~~pC~~~g~C~~~~~~~~C~C~~g~~g~~C~~------~~~eC~~~~~~~C~~--~C~---~~~g~~~C~C~~g~~ 74 (317)
T 3h5c_B 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCEL------AKNECHPERTDGCQH--FCL---PGQESYTCSCAQGYR 74 (317)
T ss_dssp CCTTSCCCTTTCCCCCCSSSCCCCCSSSCCSSSSCC------CSSSCCTTCTTSCSS--EEE---CCSSSCEEECCTTEE
T ss_pred CcCCCCCCCCCCEeECCCCCeEEECCCCCcCCcccc------CcccCCCCCCCCCcC--ccc---cCCCeeEEecccccc
Confidence 34667899999999754 46999999999999985 4788886 78987 763 556779999999999
Q ss_pred cCC
Q psy12394 430 GDH 432 (1873)
Q Consensus 430 G~~ 432 (1873)
|..
T Consensus 75 ~~~ 77 (317)
T 3h5c_B 75 LGE 77 (317)
T ss_dssp CCT
T ss_pred ccc
Confidence 854
No 60
>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*
Probab=96.79 E-value=0.0009 Score=67.76 Aligned_cols=61 Identities=23% Similarity=0.563 Sum_probs=43.2
Q ss_pred CCCCceecCC--CCeeeeCCCccCCCCccCCCCccCCCCCCC--CCCCCCcEeeeeccCCCCCeeeCCCCcccC
Q psy12394 362 HYATGNCAEG--TGKCECRPEYTKPDCNSCAFGYFGYPNCEP--CKCHMNGTLDFYCEPASGQQCPCKENYAGD 431 (1873)
Q Consensus 362 c~n~g~C~~~--~g~C~C~~G~tG~~Ce~C~~g~~~~~~C~~--~~C~n~gtc~~~cd~~~g~~C~C~~g~~G~ 431 (1873)
|.++|+|.+. .++|.|++||+|..|+.-. ..++|.. ..|.+ +|. +...+|.|.|++||+|.
T Consensus 22 C~~~g~C~~~~~~y~C~C~~G~~G~~C~~~~----~~~~C~~~~~~C~~--~C~---n~~g~y~C~C~~G~~~~ 86 (114)
T 1aut_L 22 CCGHGTCIDGIGSFSCDCRSGWEGRFCQREV----SFLNCSLDNGGCTH--YCL---EEVGWRRCSCAPGYKLG 86 (114)
T ss_dssp TTTSEEECCCSSCCCEEECTTEESTTSCEEC----CSSSSSSGGGGCSS--EEE---ECSSSEEEECCTTEEEC
T ss_pred CCCcCCCCCCCCCcEeeCCCCCcCCCcCcCC----cCCcCcCCCCCCCC--EeE---CCCCCEEeECCCCeeEC
Confidence 7899999754 4699999999999998411 1234542 23332 663 45677999999999953
No 61
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Probab=96.78 E-value=0.00023 Score=74.41 Aligned_cols=71 Identities=24% Similarity=0.732 Sum_probs=22.3
Q ss_pred CCCCCccCCCCCCCCCCeeecCC--CceecCCCCcCCCCcccCCcccCC-CCCCC--CCCCCCCCCCceecCC-CCCccc
Q psy12394 212 ETDVCQPCQCAFHYATGNCAEGT--GKCECRPEYTKPDCNSCAFGYFGY-PNCEP--CKCHMNGTLDFYCEPA-SGQQCP 285 (1873)
Q Consensus 212 ~~~~C~~C~C~~~~n~g~C~~~~--g~C~C~~G~~G~~Ce~C~~g~~g~-~~C~~--c~C~~~gt~~~~C~~~-~G~~C~ 285 (1873)
++++|.+.+|. ++|+|.+.. ++|.|++||+|..|+. .+ +.|.. .+|.+ .|... .+|.|.
T Consensus 41 d~d~C~~~pC~---n~g~C~~~~~~y~C~C~~G~~G~~C~~------~i~d~C~~~~~~C~~------~C~~~~g~y~C~ 105 (134)
T 2vh0_B 41 DGDQCETSPCQ---NQGKCKDGLGEYTCTCLEGFEGKNCEL------FTRKLCSLDNGDCDQ------FCHEEQNSVVCS 105 (134)
T ss_dssp -------------------------------------------------CCGGGTGGGGCSS------EEEEETTEEEEE
T ss_pred CcCcCCCCCCC---CcCCcccCCCCEEeeCCCCccCCcccc------CCCCccccCCCCCCC------EeECCCCCEEEE
Confidence 66788866665 889998764 5999999999999985 33 34543 34542 56544 458999
Q ss_pred CCCCCc----cCCCcc
Q psy12394 286 CKENYA----GDHCDT 297 (1873)
Q Consensus 286 C~~g~~----G~~Ce~ 297 (1873)
|++||+ |..|+.
T Consensus 106 C~~Gy~l~~~g~~C~~ 121 (134)
T 2vh0_B 106 CARGYTLADNGKACIP 121 (134)
T ss_dssp CCTTEEECTTSSCEEE
T ss_pred CCCCcEECCCCCccCc
Confidence 999999 888874
No 62
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A
Probab=96.78 E-value=0.00089 Score=63.63 Aligned_cols=67 Identities=25% Similarity=0.664 Sum_probs=49.2
Q ss_pred CCCCCcc-CCCCCCCCCCeeecCC--CceecCCCCc--CCCCcccCCcccCCCCCC-CCCCCCCCCCCceecCC-CCCcc
Q psy12394 212 ETDVCQP-CQCAFHYATGNCAEGT--GKCECRPEYT--KPDCNSCAFGYFGYPNCE-PCKCHMNGTLDFYCEPA-SGQQC 284 (1873)
Q Consensus 212 ~~~~C~~-C~C~~~~n~g~C~~~~--g~C~C~~G~~--G~~Ce~C~~g~~g~~~C~-~c~C~~~gt~~~~C~~~-~G~~C 284 (1873)
++++|.. -+|. + |+|.+.. ++|.|++||+ |..|+ ++++|. ..+|.+ +.|... .+|.|
T Consensus 4 dideC~~~~~C~---~-g~C~n~~g~y~C~C~~Gy~~~g~~C~-------dideC~~~~~C~~-----~~C~n~~g~y~C 67 (82)
T 1emn_A 4 DMDECKEPDVCK---H-GQCINTDGSYRCECPFGYILAGNECV-------DTDECSVGNPCGN-----GTCKNVIGGFEC 67 (82)
T ss_dssp CCCSSSSTTSCS---S-SEECCCSSCCCEECCTTEEEETTEEE-------ECCGGGTCCTTSS-----SCEEECSSSEEE
T ss_pred ccccCCCCCCcC---C-CEEEecCCCEEEECCCCeECCCCccC-------CcccccCCCCCCC-----CEeECCCCCEEe
Confidence 6778874 4553 5 7998764 5999999997 88886 356776 567763 257554 56999
Q ss_pred cCCCCCccCC
Q psy12394 285 PCKENYAGDH 294 (1873)
Q Consensus 285 ~C~~g~~G~~ 294 (1873)
.|++||+|..
T Consensus 68 ~C~~G~~g~~ 77 (82)
T 1emn_A 68 TCEEGFEPGP 77 (82)
T ss_dssp CCSSSSCCCS
T ss_pred ECCCCeEeCC
Confidence 9999999864
No 63
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.73 E-value=0.064 Score=71.25 Aligned_cols=54 Identities=24% Similarity=0.685 Sum_probs=33.8
Q ss_pred cccCCCccc----ccCCCcccCCCc--cCCCCCcCCCCCCcCCCCCCCCCceecCCCCeee----eCCCccCCCCc
Q psy12394 322 LCEVDSGNC----TCRNNFAGRTCD--SCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCE----CRPEYTKPDCN 387 (1873)
Q Consensus 322 ~C~~~~g~C----~C~~G~~G~~Ce--~C~~G~~g~~~C~~C~c~~c~n~g~C~~~~g~C~----C~~G~tG~~Ce 387 (1873)
.|.+....| .|..|.-..+|. .|.++.| .|. .+.|......|. |..|..+..|.
T Consensus 187 ~Ci~~~~~CDg~~dC~dgsDE~~C~~~~C~~~~f-----------~C~-~g~Ci~~~~~Cdg~~dC~dgsde~~C~ 250 (699)
T 1n7d_A 187 ECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEF-----------QCS-DGNCIHGSRQCDREYDCKDMSDEVGCV 250 (699)
T ss_dssp CCCSTTCTTSSSCCSTTSCSSCSCCCCCCCSSEE-----------ESS-SSCEEETTCCSSSCCCSSSSCSSSSTT
T ss_pred ceEechhccCCCCCCCCCcccccCCCcccCCCcE-----------ecC-CCceeeeecccCCCCCCCCCCccCCCC
Confidence 565666666 677777777775 3333222 233 357777777775 88887777775
No 64
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}
Probab=96.62 E-value=0.0015 Score=78.18 Aligned_cols=68 Identities=25% Similarity=0.759 Sum_probs=52.3
Q ss_pred CCCCCccCCCCCCCCCCeeecCC--CceecCCCCcCCCCcccCCcccCCCCCCC---CCCCCCCCCCceecCC-CCCccc
Q psy12394 212 ETDVCQPCQCAFHYATGNCAEGT--GKCECRPEYTKPDCNSCAFGYFGYPNCEP---CKCHMNGTLDFYCEPA-SGQQCP 285 (1873)
Q Consensus 212 ~~~~C~~C~C~~~~n~g~C~~~~--g~C~C~~G~~G~~Ce~C~~g~~g~~~C~~---c~C~~~gt~~~~C~~~-~G~~C~ 285 (1873)
+.++|.+-+|. |+|+|.+.. ++|.|++||+|.+|+. ++++|.. .+|.+ .|.+. .+|.|.
T Consensus 4 d~~~C~~~pC~---~~g~C~~~~~~~~C~C~~g~~g~~C~~------~~~eC~~~~~~~C~~------~C~~~~g~~~C~ 68 (317)
T 3h5c_B 4 GGSPCISQPCL---HNGSCQDSIWGYTCTCSPGYEGSNCEL------AKNECHPERTDGCQH------FCLPGQESYTCS 68 (317)
T ss_dssp --CCTTSCCCT---TTCCCCCCSSSCCCCCSSSCCSSSSCC------CSSSCCTTCTTSCSS------EEECCSSSCEEE
T ss_pred cCCcCCCCCCC---CCCEeECCCCCeEEECCCCCcCCcccc------CcccCCCCCCCCCcC------ccccCCCeeEEe
Confidence 56788876665 899998764 5999999999999986 5678876 67864 56554 569999
Q ss_pred CCCCCccCC
Q psy12394 286 CKENYAGDH 294 (1873)
Q Consensus 286 C~~g~~G~~ 294 (1873)
|++||+|..
T Consensus 69 C~~g~~~~~ 77 (317)
T 3h5c_B 69 CAQGYRLGE 77 (317)
T ss_dssp CCTTEECCT
T ss_pred ccccccccc
Confidence 999998753
No 65
>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D
Probab=96.39 E-value=0.0004 Score=60.00 Aligned_cols=44 Identities=14% Similarity=0.372 Sum_probs=33.4
Q ss_pred eeeeCCCccCCCCccCCCCccCCCCCCCCCCCCCcEeeeec-cCCCCCeeeCCCCcccCCCCc
Q psy12394 374 KCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYC-EPASGQQCPCKENYAGDHCDT 435 (1873)
Q Consensus 374 ~C~C~~G~tG~~Ce~C~~g~~~~~~C~~~~C~n~gtc~~~c-d~~~g~~C~C~~g~~G~~Ce~ 435 (1873)
+|.|++||+ +.||+|+|+|...- +...+|.|.|++||+|.+||.
T Consensus 4 ~C~C~~g~~------------------~~pC~NGGtC~~~~~~~~~~y~C~C~~Gf~G~~Ce~ 48 (52)
T 3ca7_A 4 TYKCPETFD------------------AWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEY 48 (52)
T ss_dssp CBCCCHHHH------------------HHTSCTTCEEEEEEETTEEEEEEECCTTEESTTSCE
T ss_pred eeECCCCCc------------------CCcCCCCCEEecCccCCCCCEEEECCCCCcCCCCcc
Confidence 577888775 35899999985311 134568999999999999983
No 66
>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1
Probab=96.27 E-value=0.0026 Score=53.12 Aligned_cols=37 Identities=27% Similarity=0.574 Sum_probs=29.2
Q ss_pred CCCCC---CCCCCcEeeeeccCCCCCeeeCCCCcccCCCCc
Q psy12394 398 NCEPC---KCHMNGTLDFYCEPASGQQCPCKENYAGDHCDT 435 (1873)
Q Consensus 398 ~C~~~---~C~n~gtc~~~cd~~~g~~C~C~~g~~G~~Ce~ 435 (1873)
.|.+. ||+|+|+|.. .+...+|.|.|++||+|.+|+.
T Consensus 2 ~C~~~~~~pC~ngg~C~~-~~~~~~~~C~C~~G~~G~~Ce~ 41 (45)
T 1a3p_A 2 GXPSSYDGYCLNGGVXMH-IESLDSYTCNCVIGYSGDRCQT 41 (45)
T ss_dssp CCTTCCSSCCSSSCEEEE-CTTTSSEEEECCTTEETTTTCE
T ss_pred CcccCCCCCCCCCCEEEe-ecCCCCEEEEcCCCCcCCcCCc
Confidence 45555 9999999741 1456779999999999999973
No 67
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Probab=96.24 E-value=0.0035 Score=50.50 Aligned_cols=36 Identities=22% Similarity=0.710 Sum_probs=29.1
Q ss_pred CCCCCccCCCCCCCCCCeeecCCC--ceecCCCCcCCCCcc
Q psy12394 212 ETDVCQPCQCAFHYATGNCAEGTG--KCECRPEYTKPDCNS 250 (1873)
Q Consensus 212 ~~~~C~~C~C~~~~n~g~C~~~~g--~C~C~~G~~G~~Ce~ 250 (1873)
++++|.+.+|. |+|+|.+..+ +|.|++||+|.+||.
T Consensus 2 d~d~C~~~pC~---ngg~C~~~~~~~~C~C~~G~~G~~Ce~ 39 (39)
T 1edm_B 2 DGDQCESNPCL---NGGSCKDDINSYECWCPFGFEGKNCEL 39 (39)
T ss_dssp CCCTTTTCCCC---TTCEEEEETTEEEEECCTTCCSTTSCC
T ss_pred ccccCCCCCCC---CCCEeEcCCCceEeECCCCCcCCccCC
Confidence 46778766665 9999987644 899999999999973
No 68
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Probab=96.22 E-value=0.0038 Score=54.09 Aligned_cols=39 Identities=33% Similarity=0.767 Sum_probs=31.4
Q ss_pred CCCCCCC---CCCCCcEeeeeccCCCCCeeeCCCCcccCCCCc
Q psy12394 396 YPNCEPC---KCHMNGTLDFYCEPASGQQCPCKENYAGDHCDT 435 (1873)
Q Consensus 396 ~~~C~~~---~C~n~gtc~~~cd~~~g~~C~C~~g~~G~~Ce~ 435 (1873)
++.|.+. ||+|+|+|.. .+...+|.|.|++||+|.+|+.
T Consensus 3 i~~C~~~~~~pC~ngg~C~~-~~~~~~~~C~C~~G~~G~~Ce~ 44 (53)
T 1egf_A 3 YPGCPSSYDGYCLNGGVCMH-IESLDSYTCNCVIGYSGDRCQT 44 (53)
T ss_dssp ECCCCTTSSCSSCSSCEEEE-ESSSSCEEEECCTTCCSSSSCC
T ss_pred cccCCCCCCCcCCCCcEEEe-eCCCCCEEEECCCCCcCCcCCc
Confidence 4667776 9999999842 1456789999999999999985
No 69
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}
Probab=96.16 E-value=0.0019 Score=62.06 Aligned_cols=59 Identities=22% Similarity=0.467 Sum_probs=46.1
Q ss_pred CCCCceecCC--CCeeeeCCCcc----CCCCccCCCCccCCCCCCCCCCCCCcEeeeeccCCCCCeeeCCCCcccCCCC
Q psy12394 362 HYATGNCAEG--TGKCECRPEYT----KPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCD 434 (1873)
Q Consensus 362 c~n~g~C~~~--~g~C~C~~G~t----G~~Ce~C~~g~~~~~~C~~~~C~n~gtc~~~cd~~~g~~C~C~~g~~G~~Ce 434 (1873)
| ++++|... .++|.|++||+ |..|+. +++|...+|. ++|. +...+|.|.|+ ||.|..++
T Consensus 13 C-~~~~C~n~~g~y~C~C~~G~~~~~~g~~C~d-------ideC~~~~C~--~~C~---n~~g~y~C~C~-g~~G~~~~ 77 (87)
T 1z6c_A 13 C-GTAVCKNIPGDFECECPEGYRYNLKSKSCED-------IDECSENMCA--QLCV---NYPGGYTCYCD-GKKGFKLA 77 (87)
T ss_dssp B-TTSSCCCBTTBCCCSSSTTCEEETTTTEEEC-------CCHHHHSCCS--SEEC---CCSSSCCEECC-SSSCCBCC
T ss_pred C-CCCEeECCCCCEEEECCCCceECCCCCcCCC-------cCeeCCCCCC--CEEE---ccCCCEEEECC-CCcCCccc
Confidence 6 67888644 46999999999 778863 7788888887 6763 45677999998 88887775
No 70
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.04 E-value=0.064 Score=71.25 Aligned_cols=156 Identities=21% Similarity=0.567 Sum_probs=87.7
Q ss_pred CCeeecCCCce----ecCCCCcCCCCc--ccCCcccCCCCCCCCCCCCCCCCCceecCCCCCccc----CCCCCccCCCc
Q psy12394 227 TGNCAEGTGKC----ECRPEYTKPDCN--SCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCP----CKENYAGDHCD 296 (1873)
Q Consensus 227 ~g~C~~~~g~C----~C~~G~~G~~Ce--~C~~g~~g~~~C~~c~C~~~gt~~~~C~~~~G~~C~----C~~g~~G~~Ce 296 (1873)
+|.|......| .|..|....+|. .|.++.| .|.+ +.|... .++|. |..|..+..|.
T Consensus 185 ~g~Ci~~~~~CDg~~dC~dgsDE~~C~~~~C~~~~f--------~C~~-----g~Ci~~-~~~Cdg~~dC~dgsde~~C~ 250 (699)
T 1n7d_A 185 SGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEF--------QCSD-----GNCIHG-SRQCDREYDCKDMSDEVGCV 250 (699)
T ss_dssp SSCCCSTTCTTSSSCCSTTSCSSCSCCCCCCCSSEE--------ESSS-----SCEEET-TCCSSSCCCSSSSCSSSSTT
T ss_pred CCceEechhccCCCCCCCCCcccccCCCcccCCCcE--------ecCC-----Cceeee-ecccCCCCCCCCCCccCCCC
Confidence 35888887788 799998888886 3443322 2331 235442 23564 88888887775
Q ss_pred cCCCCCCCCCCCC---CCCcCCCCCCCCcccCC----CcccccCCCcccCC--CccCCCCCcCCCCCCcCCCCCCCCCce
Q psy12394 297 TCAQGYYNFPTCS---PCECNAVGSLSDLCEVD----SGNCTCRNNFAGRT--CDSCADGYYNYPRCTSCQCAFHYATGN 367 (1873)
Q Consensus 297 ~C~~Gf~g~~~C~---~c~C~~~gs~~~~C~~~----~g~C~C~~G~~G~~--Ce~C~~G~~g~~~C~~C~c~~c~n~g~ 367 (1873)
. ...|. ...|.+ +.|... .+.+.|..|..+.. |+. ..|.. .-.+| ...
T Consensus 251 ~-------~~~C~~~~~~~C~~-----g~Ci~~~~~Cd~~~dC~dgsDe~~~~C~~--------~eC~~-~~~~C--~~~ 307 (699)
T 1n7d_A 251 N-------VTLCEGPNKFKCHS-----GECITLDKVCNMARDCRDWSDEPIKECGT--------NECLD-NNGGC--SHV 307 (699)
T ss_dssp C-------CCCCCSTTCCCCTT-----SCCCCSSCCSCSSCCSSSSCSCCCSSCCC--------CCTTS-STTTS--CTT
T ss_pred C-------CCcccCCCceecCC-----CcEeCCcccccccceecCccccccccccc--------ccccc-cccCc--CCC
Confidence 3 01221 112333 122221 24566776665432 221 11211 00011 124
Q ss_pred ecC--CCCeeeeCCCcc---CCCCccCCCCccCCCCCC-CCCCCCCcEeeeeccCCCCCeeeCCCCcccC
Q psy12394 368 CAE--GTGKCECRPEYT---KPDCNSCAFGYFGYPNCE-PCKCHMNGTLDFYCEPASGQQCPCKENYAGD 431 (1873)
Q Consensus 368 C~~--~~g~C~C~~G~t---G~~Ce~C~~g~~~~~~C~-~~~C~n~gtc~~~cd~~~g~~C~C~~g~~G~ 431 (1873)
|.. ..++|.|++||+ |..|+. +++|. +.+|.. +|. +...+|.|.|++||++.
T Consensus 308 C~~~~~~~~C~C~~G~~~~~~~~C~d-------ideC~~~~~C~~--~C~---n~~g~y~C~C~~G~~~~ 365 (699)
T 1n7d_A 308 CNDLKIGYECLCPDGFQLVAQRRCED-------IDECQDPDTCSQ--LCV---NLEGGYKCQCEEGFQLD 365 (699)
T ss_dssp CCCCTTCCCCCCCSSSCCCSSSCCCC-------CCCCSSSSSCTT--TCC---BCSSCBCCCCCSSCBCC
T ss_pred cccCCCCcEEeCCCCeEcCCCCcccC-------ccccCCCCcccc--ccc---cCCCCeeeeeecccccC
Confidence 543 457999999999 677873 67776 456653 442 45677999999999974
No 71
>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A
Probab=96.03 E-value=0.0027 Score=53.35 Aligned_cols=38 Identities=24% Similarity=0.599 Sum_probs=29.5
Q ss_pred CCCCCC---CCCCCCcEeeeeccCCCCCeeeCCCCcccCCCCc
Q psy12394 396 YPNCEP---CKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDT 435 (1873)
Q Consensus 396 ~~~C~~---~~C~n~gtc~~~cd~~~g~~C~C~~g~~G~~Ce~ 435 (1873)
++.|.+ .||.| |+|... ...++|.|.|++||+|.+||.
T Consensus 3 i~~C~~~~~~pC~n-G~C~~~-~~~~~~~C~C~~GytG~~Ce~ 43 (46)
T 1k36_A 3 ITKCSSDMNGYCLH-GQCIYL-VDMSQNYCRCEVGYTGVRCEH 43 (46)
T ss_dssp EECCCTTCCSSCSS-EEEEEE-TTTTEEEEEECTTCSSTTSCC
T ss_pred cccCCCCCCCCCCC-CEeecc-CCCCCEEEECCCCCccCCCCc
Confidence 456776 89999 898531 234678999999999999984
No 72
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Probab=96.02 E-value=0.0019 Score=61.88 Aligned_cols=67 Identities=22% Similarity=0.666 Sum_probs=46.4
Q ss_pred CCCCCccCC--CCCCCCCCeeecCCC--ceecCCCCc-----CCCCcccCCcccCCCCCCCCC--CCCCCCCCceecCC-
Q psy12394 212 ETDVCQPCQ--CAFHYATGNCAEGTG--KCECRPEYT-----KPDCNSCAFGYFGYPNCEPCK--CHMNGTLDFYCEPA- 279 (1873)
Q Consensus 212 ~~~~C~~C~--C~~~~n~g~C~~~~g--~C~C~~G~~-----G~~Ce~C~~g~~g~~~C~~c~--C~~~gt~~~~C~~~- 279 (1873)
++++|..-+ |. + ++|.+..+ +|.|++||+ |..|+ ++++|...+ |. + +.|.+.
T Consensus 2 dideC~~~~~~C~---~-g~C~n~~g~y~C~C~~Gy~~~~~~g~~C~-------dideC~~~~~~C~-~----~~C~n~~ 65 (86)
T 1lmj_A 2 DIDECRISPDLCG---R-GQCVNTPGDFECKCDEGYESGFMMMKNCM-------DIDECQRDPLLCR-G----GVCHNTE 65 (86)
T ss_dssp CCCTTTTCSSTTT---T-SCEEEETTEEEECCCSSEEECTTTSSSEE-------ECCHHHHCSSTTT-T----SEEEEET
T ss_pred ccccccCCCCCCC---C-CEEECCCCCEEeeCCCCcCccCCCCCccC-------CcccccCCCCcCC-C----CEeEcCC
Confidence 567776433 53 4 48987654 999999998 77775 356676444 54 1 357654
Q ss_pred CCCcccCCCCCccCC
Q psy12394 280 SGQQCPCKENYAGDH 294 (1873)
Q Consensus 280 ~G~~C~C~~g~~G~~ 294 (1873)
.+|.|.|++||+|..
T Consensus 66 g~y~C~C~~G~~~~~ 80 (86)
T 1lmj_A 66 GSYRCECPPGHQLSP 80 (86)
T ss_dssp TEEEEESCTTSCCCS
T ss_pred CCEEEECcCCcccCC
Confidence 459999999998853
No 73
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Probab=95.96 E-value=0.0018 Score=62.13 Aligned_cols=59 Identities=19% Similarity=0.515 Sum_probs=44.0
Q ss_pred CCCCceecCC--CCeeeeCCCcc-----CCCCccCCCCccCCCCCCCCC--CCCCcEeeeeccCCCCCeeeCCCCcccCC
Q psy12394 362 HYATGNCAEG--TGKCECRPEYT-----KPDCNSCAFGYFGYPNCEPCK--CHMNGTLDFYCEPASGQQCPCKENYAGDH 432 (1873)
Q Consensus 362 c~n~g~C~~~--~g~C~C~~G~t-----G~~Ce~C~~g~~~~~~C~~~~--C~n~gtc~~~cd~~~g~~C~C~~g~~G~~ 432 (1873)
|.+ ++|... .++|.|++||+ |..|+. +++|...+ |. +++|. +...+|.|.|++||+|..
T Consensus 13 C~~-g~C~n~~g~y~C~C~~Gy~~~~~~g~~C~d-------ideC~~~~~~C~-~~~C~---n~~g~y~C~C~~G~~~~~ 80 (86)
T 1lmj_A 13 CGR-GQCVNTPGDFECKCDEGYESGFMMMKNCMD-------IDECQRDPLLCR-GGVCH---NTEGSYRCECPPGHQLSP 80 (86)
T ss_dssp TTT-SCEEEETTEEEECCCSSEEECTTTSSSEEE-------CCHHHHCSSTTT-TSEEE---EETTEEEEESCTTSCCCS
T ss_pred CCC-CEEECCCCCEEeeCCCCcCccCCCCCccCC-------cccccCCCCcCC-CCEeE---cCCCCEEEECcCCcccCC
Confidence 655 488644 46999999998 677763 67787655 75 57874 456779999999999864
No 74
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}
Probab=95.76 E-value=0.0035 Score=60.15 Aligned_cols=68 Identities=25% Similarity=0.586 Sum_probs=49.1
Q ss_pred CCCCCccCC--CCCCCCCCeeecCC--CceecCCCCc----CCCCcccCCcccCCCCCCCCCCCCCCCCCceecCC-CCC
Q psy12394 212 ETDVCQPCQ--CAFHYATGNCAEGT--GKCECRPEYT----KPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPA-SGQ 282 (1873)
Q Consensus 212 ~~~~C~~C~--C~~~~n~g~C~~~~--g~C~C~~G~~----G~~Ce~C~~g~~g~~~C~~c~C~~~gt~~~~C~~~-~G~ 282 (1873)
++++|..-+ | ++++|.+.. ++|.|++||+ |..|+ ++++|...+|. +.|... .+|
T Consensus 2 dideC~~~~~~C----~~~~C~n~~g~y~C~C~~G~~~~~~g~~C~-------dideC~~~~C~------~~C~n~~g~y 64 (87)
T 1z6c_A 2 DVDECSLKPSIC----GTAVCKNIPGDFECECPEGYRYNLKSKSCE-------DIDECSENMCA------QLCVNYPGGY 64 (87)
T ss_dssp CSCSSSSSSSSB----TTSSCCCBTTBCCCSSSTTCEEETTTTEEE-------CCCHHHHSCCS------SEECCCSSSC
T ss_pred ccccccCCCCCC----CCCEeECCCCCEEEECCCCceECCCCCcCC-------CcCeeCCCCCC------CEEEccCCCE
Confidence 457776433 4 457887654 5999999999 77885 35677767775 257554 469
Q ss_pred cccCCCCCccCCCcc
Q psy12394 283 QCPCKENYAGDHCDT 297 (1873)
Q Consensus 283 ~C~C~~g~~G~~Ce~ 297 (1873)
.|.|+ |+.|..++.
T Consensus 65 ~C~C~-g~~G~~~~~ 78 (87)
T 1z6c_A 65 TCYCD-GKKGFKLAQ 78 (87)
T ss_dssp CEECC-SSSCCBCCT
T ss_pred EEECC-CCcCCcccC
Confidence 99998 888888764
No 75
>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D
Probab=95.43 E-value=0.0017 Score=56.06 Aligned_cols=29 Identities=17% Similarity=0.495 Sum_probs=24.3
Q ss_pred CCCCCCceecC----C--CCeeeeCCCccCCCCcc
Q psy12394 360 AFHYATGNCAE----G--TGKCECRPEYTKPDCNS 388 (1873)
Q Consensus 360 ~~c~n~g~C~~----~--~g~C~C~~G~tG~~Ce~ 388 (1873)
+||+|+|+|.. . .+.|.|++||+|.+||.
T Consensus 14 ~pC~NGGtC~~~~~~~~~~y~C~C~~Gf~G~~Ce~ 48 (52)
T 3ca7_A 14 WYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEY 48 (52)
T ss_dssp HTSCTTCEEEEEEETTEEEEEEECCTTEESTTSCE
T ss_pred CcCCCCCEEecCccCCCCCEEEECCCCCcCCCCcc
Confidence 57889999974 2 35999999999999984
No 76
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A
Probab=95.39 E-value=0.0044 Score=55.71 Aligned_cols=39 Identities=21% Similarity=0.418 Sum_probs=30.7
Q ss_pred CCCCCCCCCCCcEeeeec--cCCCCCeeeCCCCcccCCCCc
Q psy12394 397 PNCEPCKCHMNGTLDFYC--EPASGQQCPCKENYAGDHCDT 435 (1873)
Q Consensus 397 ~~C~~~~C~n~gtc~~~c--d~~~g~~C~C~~g~~G~~Ce~ 435 (1873)
+.|.+.||+|+|+|.... +...+|.|.|++||+|.+|+.
T Consensus 7 ~~C~~~pC~ngG~C~~~~~~~~~~~y~C~C~~Gf~G~~Ce~ 47 (63)
T 1hae_A 7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTE 47 (63)
T ss_dssp CHHHHTTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSCE
T ss_pred CCCCCCcCCCCcEEecCCccCCCCCEEEECCCCCcCCccCc
Confidence 456778999999985321 245678999999999999983
No 77
>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A
Probab=95.27 E-value=0.0033 Score=55.99 Aligned_cols=36 Identities=28% Similarity=0.546 Sum_probs=31.6
Q ss_pred CCCCCCCCCCCC--cEeeeeccCCCCCeeeCCCCcc-cCCCC
Q psy12394 396 YPNCEPCKCHMN--GTLDFYCEPASGQQCPCKENYA-GDHCD 434 (1873)
Q Consensus 396 ~~~C~~~~C~n~--gtc~~~cd~~~g~~C~C~~g~~-G~~Ce 434 (1873)
.++|.+.||+|+ |+|. +..++|.|.|++||+ |.+|+
T Consensus 11 ~d~C~snPC~nga~gtC~---~~~g~y~C~C~~Gy~~G~~C~ 49 (61)
T 2k2s_B 11 PAACSSNPCGPEAAGTCK---ETNSGYICRCNQGYRISLDGT 49 (61)
T ss_dssp CCHHHHCSSCSSSCCEEE---ECSSEEEEECCTTEEEEECSS
T ss_pred CCcCcCCCCcCCCccccc---cCCCceEeECCCCCccCCCCC
Confidence 678999999999 8984 556789999999999 99997
No 78
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A
Probab=95.17 E-value=0.0048 Score=55.43 Aligned_cols=36 Identities=25% Similarity=0.694 Sum_probs=30.0
Q ss_pred CCCcCCCCCCCCCceecC-------CCCeeeeCCCccCCCCcc
Q psy12394 353 RCTSCQCAFHYATGNCAE-------GTGKCECRPEYTKPDCNS 388 (1873)
Q Consensus 353 ~C~~C~c~~c~n~g~C~~-------~~g~C~C~~G~tG~~Ce~ 388 (1873)
.|..|..+||+|+|+|.. ..+.|.|++||+|.+|+.
T Consensus 5 ~c~~C~~~pC~ngG~C~~~~~~~~~~~y~C~C~~Gf~G~~Ce~ 47 (63)
T 1hae_A 5 KCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTE 47 (63)
T ss_dssp ECCHHHHTTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSCE
T ss_pred ccCCCCCCcCCCCcEEecCCccCCCCCEEEECCCCCcCCccCc
Confidence 456677789999999974 356899999999999984
No 79
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A
Probab=95.16 E-value=0.0072 Score=60.42 Aligned_cols=54 Identities=22% Similarity=0.588 Sum_probs=16.9
Q ss_pred eecC--CCCeeeeCCCccC---CCCccCCCCccCCCCCC-CCCCCCCcEeeeeccCCCCCeeeCCCCcccCC
Q psy12394 367 NCAE--GTGKCECRPEYTK---PDCNSCAFGYFGYPNCE-PCKCHMNGTLDFYCEPASGQQCPCKENYAGDH 432 (1873)
Q Consensus 367 ~C~~--~~g~C~C~~G~tG---~~Ce~C~~g~~~~~~C~-~~~C~n~gtc~~~cd~~~g~~C~C~~g~~G~~ 432 (1873)
+|.+ ..+.|.|++||+| ..|+. +++|. +.+|. ++|. +...+|.|.|++||+|..
T Consensus 42 ~C~n~~g~y~C~C~~Gy~g~~g~~C~d-------ideC~~~~~C~--~~C~---n~~gsy~C~C~~Gy~~~~ 101 (107)
T 2w2n_E 42 VCNDLKIGYECLCPDGFQLVAQRRCED-------IDECQDPDTCS--QLCV---NLEGGYKCQCEEGFQLDP 101 (107)
T ss_dssp EEECCSBSCEEECCTTCEEETTTEEEC---------------------------------------------
T ss_pred EeEeCCCCeEEECCCCccccCCCcccc-------ccccCCCCCcC--Ceee---cCCCCEEEECCCCceECC
Confidence 6754 3569999999998 67763 67786 36785 5663 456679999999999854
No 80
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A
Probab=95.01 E-value=0.0086 Score=59.85 Aligned_cols=54 Identities=24% Similarity=0.641 Sum_probs=18.0
Q ss_pred CeeecC--CCceecCCCCcC---CCCcccCCcccCCCCCC-CCCCCCCCCCCceecCC-CCCcccCCCCCccCC
Q psy12394 228 GNCAEG--TGKCECRPEYTK---PDCNSCAFGYFGYPNCE-PCKCHMNGTLDFYCEPA-SGQQCPCKENYAGDH 294 (1873)
Q Consensus 228 g~C~~~--~g~C~C~~G~~G---~~Ce~C~~g~~g~~~C~-~c~C~~~gt~~~~C~~~-~G~~C~C~~g~~G~~ 294 (1873)
.+|.+. .++|.|++||+| ..|+ ++++|. +.+|. +.|.+. .+|.|.|++||+|..
T Consensus 41 ~~C~n~~g~y~C~C~~Gy~g~~g~~C~-------dideC~~~~~C~------~~C~n~~gsy~C~C~~Gy~~~~ 101 (107)
T 2w2n_E 41 YVCNDLKIGYECLCPDGFQLVAQRRCE-------DIDECQDPDTCS------QLCVNLEGGYKCQCEEGFQLDP 101 (107)
T ss_dssp SEEECCSBSCEEECCTTCEEETTTEEE-------C---------------------------------------
T ss_pred CEeEeCCCCeEEECCCCccccCCCccc-------cccccCCCCCcC------CeeecCCCCEEEECCCCceECC
Confidence 478775 459999999998 6776 356776 35664 246544 569999999998754
No 81
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Probab=94.85 E-value=0.0083 Score=51.92 Aligned_cols=34 Identities=24% Similarity=0.572 Sum_probs=27.9
Q ss_pred CCCCCCCcEeeeeccCCCCCeeeCCCCcccCCCCc
Q psy12394 401 PCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDT 435 (1873)
Q Consensus 401 ~~~C~n~gtc~~~cd~~~g~~C~C~~g~~G~~Ce~ 435 (1873)
+.||.|+|+|.. .+..++|.|.|++||+|.+||.
T Consensus 11 ~~pC~nGG~C~~-~~~~~~~~C~C~~GytG~~Ce~ 44 (53)
T 1nql_B 11 DGYCLHDGVCMY-IEALDKYACNCVVGYIGERCQY 44 (53)
T ss_dssp CCEECTTCEEEE-ETTTTEEEEEECTTEESTTSCE
T ss_pred CCCCCCCeEEee-ecCCCCEEEecCCCCcCCCCCc
Confidence 568999999842 2456679999999999999984
No 82
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Probab=94.81 E-value=0.024 Score=49.03 Aligned_cols=36 Identities=25% Similarity=0.644 Sum_probs=27.9
Q ss_pred CCCCCccC---CCCCCCCCCeee--cC--CCceecCCCCcCCCCcc
Q psy12394 212 ETDVCQPC---QCAFHYATGNCA--EG--TGKCECRPEYTKPDCNS 250 (1873)
Q Consensus 212 ~~~~C~~C---~C~~~~n~g~C~--~~--~g~C~C~~G~~G~~Ce~ 250 (1873)
++++|.+. +|. |+|+|. +. .+.|.|++||+|.+|+.
T Consensus 2 ~i~~C~~~~~~pC~---ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~ 44 (53)
T 1egf_A 2 SYPGCPSSYDGYCL---NGGVCMHIESLDSYTCNCVIGYSGDRCQT 44 (53)
T ss_dssp EECCCCTTSSCSSC---SSCEEEEESSSSCEEEECCTTCCSSSSCC
T ss_pred CcccCCCCCCCcCC---CCcEEEeeCCCCCEEEECCCCCcCCcCCc
Confidence 34566654 555 999998 44 34899999999999986
No 83
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=94.24 E-value=0.039 Score=74.06 Aligned_cols=85 Identities=19% Similarity=0.447 Sum_probs=34.9
Q ss_pred ccCCCcccCCCccCCCCCcCCCCCCcCCCCCCCCCceecCCC----CeeeeCCCccCCCCccCCCCccCCCCCCCCCCCC
Q psy12394 331 TCRNNFAGRTCDSCADGYYNYPRCTSCQCAFHYATGNCAEGT----GKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHM 406 (1873)
Q Consensus 331 ~C~~G~~G~~Ce~C~~G~~g~~~C~~C~c~~c~n~g~C~~~~----g~C~C~~G~tG~~Ce~C~~g~~~~~~C~~~~C~n 406 (1873)
.|..+..+..|..- ..|..=.-.+|.+ |.|.... +.+.|+.|+.+.. ..|...+|.+
T Consensus 257 dC~dgsDE~~C~~~-------~~C~~~~~~~C~~-G~Ci~~~~~Cd~~~dC~dgsDe~~-----------~~C~~~~C~~ 317 (791)
T 3m0c_C 257 DCKDMSDEVGCVNV-------TLCEGPNKFKCHS-GECITLDKVCNMARDCRDWSDEPI-----------KECGTNECLD 317 (791)
T ss_dssp -----------------------CCSTTCCCCTT-SCCCCSSCCSCSSCCSSSSCSCCC-----------TTBSCCSTTT
T ss_pred ccccccccCccccc-------ccccCCCccccCC-CcccccccccCCccccccccCccc-----------cccccccccc
Confidence 47777777777530 1121000123333 5665544 3456777665432 2244445544
Q ss_pred Cc-Eeeeec-cCCCCCeeeCCCCcc---cCCCC
Q psy12394 407 NG-TLDFYC-EPASGQQCPCKENYA---GDHCD 434 (1873)
Q Consensus 407 ~g-tc~~~c-d~~~g~~C~C~~g~~---G~~Ce 434 (1873)
+. .|...| +...+|.|.|++||. |..|+
T Consensus 318 ~~~~C~~~C~~~~~~y~C~C~~Gy~l~~g~~C~ 350 (791)
T 3m0c_C 318 NNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE 350 (791)
T ss_dssp GGGGCSSEEEECSBSEEEECCTTCEEETTTEEE
T ss_pred cccCccccccCCCCCcccCCCCCCccCCCCccc
Confidence 32 222223 345689999999996 66664
No 84
>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A
Probab=94.20 E-value=0.02 Score=48.02 Aligned_cols=28 Identities=25% Similarity=0.691 Sum_probs=24.0
Q ss_pred CCCCCCceecC----CCCeeeeCCCccCCCCcc
Q psy12394 360 AFHYATGNCAE----GTGKCECRPEYTKPDCNS 388 (1873)
Q Consensus 360 ~~c~n~g~C~~----~~g~C~C~~G~tG~~Ce~ 388 (1873)
+||+| |+|.. ..+.|.|++||+|.+||.
T Consensus 12 ~pC~n-G~C~~~~~~~~~~C~C~~GytG~~Ce~ 43 (46)
T 1k36_A 12 GYCLH-GQCIYLVDMSQNYCRCEVGYTGVRCEH 43 (46)
T ss_dssp SSCSS-EEEEEETTTTEEEEEECTTCSSTTSCC
T ss_pred CCCCC-CEeeccCCCCCEEEECCCCCccCCCCc
Confidence 79999 89974 246899999999999985
No 85
>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1
Probab=94.09 E-value=0.033 Score=46.35 Aligned_cols=25 Identities=24% Similarity=0.575 Sum_probs=21.3
Q ss_pred CCCeee--cC--CCceecCCCCcCCCCcc
Q psy12394 226 ATGNCA--EG--TGKCECRPEYTKPDCNS 250 (1873)
Q Consensus 226 n~g~C~--~~--~g~C~C~~G~~G~~Ce~ 250 (1873)
|+|+|. +. .++|.|++||+|.+|+.
T Consensus 13 ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~ 41 (45)
T 1a3p_A 13 NGGVXMHIESLDSYTCNCVIGYSGDRCQT 41 (45)
T ss_dssp SSCEEEECTTTSSEEEECCTTEETTTTCE
T ss_pred CCCEEEeecCCCCEEEEcCCCCcCCcCCc
Confidence 999997 33 45899999999999985
No 86
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Probab=93.95 E-value=0.03 Score=48.41 Aligned_cols=35 Identities=23% Similarity=0.581 Sum_probs=27.4
Q ss_pred CCcCCCCCCCCCceec--CC--CCeeeeCCCccCCCCcc
Q psy12394 354 CTSCQCAFHYATGNCA--EG--TGKCECRPEYTKPDCNS 388 (1873)
Q Consensus 354 C~~C~c~~c~n~g~C~--~~--~g~C~C~~G~tG~~Ce~ 388 (1873)
|..-..+||+|+|+|. +. .+.|.|++||+|.+||.
T Consensus 6 C~~~~~~pC~nGG~C~~~~~~~~~~C~C~~GytG~~Ce~ 44 (53)
T 1nql_B 6 CPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQY 44 (53)
T ss_dssp CCSTTCCEECTTCEEEEETTTTEEEEEECTTEESTTSCE
T ss_pred cCCCCCCCCCCCeEEeeecCCCCEEEecCCCCcCCCCCc
Confidence 3333457899999996 33 35999999999999994
No 87
>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A
Probab=92.92 E-value=0.03 Score=49.85 Aligned_cols=36 Identities=25% Similarity=0.679 Sum_probs=29.7
Q ss_pred CCCCCccCCCCCCCCC--CeeecCCC--ceecCCCCc-CCCCcc
Q psy12394 212 ETDVCQPCQCAFHYAT--GNCAEGTG--KCECRPEYT-KPDCNS 250 (1873)
Q Consensus 212 ~~~~C~~C~C~~~~n~--g~C~~~~g--~C~C~~G~~-G~~Ce~ 250 (1873)
++++|.+-+|. |+ |+|.+..+ .|.|++||+ |.+|+.
T Consensus 10 ~~d~C~snPC~---nga~gtC~~~~g~y~C~C~~Gy~~G~~C~~ 50 (61)
T 2k2s_B 10 TPAACSSNPCG---PEAAGTCKETNSGYICRCNQGYRISLDGTG 50 (61)
T ss_dssp SCCHHHHCSSC---SSSCCEEEECSSEEEEECCTTEEEEECSSS
T ss_pred CCCcCcCCCCc---CCCccccccCCCceEeECCCCCccCCCCCC
Confidence 56788876666 87 89988654 899999999 999975
No 88
>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A
Probab=92.12 E-value=0.091 Score=53.69 Aligned_cols=54 Identities=15% Similarity=0.343 Sum_probs=39.8
Q ss_pred CCCeeecC----CC-ceecCCCCcCCCCcccCCcccCCCCCCCCCCCCCCCCCceecCCCCCcccCCCCCccCCCcc
Q psy12394 226 ATGNCAEG----TG-KCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDT 297 (1873)
Q Consensus 226 n~g~C~~~----~g-~C~C~~G~~G~~Ce~C~~g~~g~~~C~~c~C~~~gt~~~~C~~~~G~~C~C~~g~~G~~Ce~ 297 (1873)
|+|+|.+. .. +|.|++||+|.+||+ ... .+|... ....|++.+..+++|..|+.
T Consensus 5 nggtC~~~~~~~~~~~C~Cp~g~~G~~Ce~------~~~----~~C~~g--------~G~~YrG~~~~t~sG~~Cq~ 63 (122)
T 2fd6_A 5 NGGTCVSNKYFSNIHWCNCPKKFGGQHCEI------DKS----KTCYEG--------NGHFYRGKASTDTMGRPCLP 63 (122)
T ss_dssp SSCEEEECTTTTTCEEEECCTTEESTTSCE------ESS----CCSBCS--------SCTTCCSCCCBBTTSCBBCC
T ss_pred CcCCcCCCcccCCCCCccCCCCCCCccccc------cCc----CCCccc--------ccccceeeccccccCCcccC
Confidence 99999875 23 899999999999996 221 134321 11358999999999999985
No 89
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=92.03 E-value=0.18 Score=67.54 Aligned_cols=53 Identities=23% Similarity=0.628 Sum_probs=37.7
Q ss_pred eecC--CCCeeeeCCCcc---CCCCccCCCCccCCCCCC-CCCCCCCcEeeeeccCCCCCeeeCCCCcccC
Q psy12394 367 NCAE--GTGKCECRPEYT---KPDCNSCAFGYFGYPNCE-PCKCHMNGTLDFYCEPASGQQCPCKENYAGD 431 (1873)
Q Consensus 367 ~C~~--~~g~C~C~~G~t---G~~Ce~C~~g~~~~~~C~-~~~C~n~gtc~~~cd~~~g~~C~C~~g~~G~ 431 (1873)
.|.. ..+.|.|++||. |..|+. +++|. +.+|. .+|. +...+|.|.|++||.+.
T Consensus 325 ~C~~~~~~y~C~C~~Gy~l~~g~~C~d-------ideC~~~~~C~--~~C~---n~~gsy~C~C~~Gy~l~ 383 (791)
T 3m0c_C 325 VCNDLKIGYECLCPDGFQLVAQRRCED-------IDECQDPDTCS--QLCV---NLEGGYKCQCEEGFQLD 383 (791)
T ss_dssp EEEECSBSEEEECCTTCEEETTTEEEC-------CCCCSSSSSCT--TTCC---BCSSCBCCCCCSSEECC
T ss_pred cccCCCCCcccCCCCCCccCCCCcccc-------CcccCCCCCCC--Ceee---cCCCCceeecCCCCEeC
Confidence 6654 356999999995 788873 67775 34554 3442 45677999999999763
No 90
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Probab=91.94 E-value=0.045 Score=48.24 Aligned_cols=33 Identities=15% Similarity=0.343 Sum_probs=25.8
Q ss_pred CCCCCcEeeeec-cCCCCCeeeCCCCcccCCCCc
Q psy12394 403 KCHMNGTLDFYC-EPASGQQCPCKENYAGDHCDT 435 (1873)
Q Consensus 403 ~C~n~gtc~~~c-d~~~g~~C~C~~g~~G~~Ce~ 435 (1873)
+|.|+|+|...- ...++|.|.|++||+|.+||.
T Consensus 15 pC~NGGtC~~~~~~~~~~~~C~C~~Gf~G~~Ce~ 48 (58)
T 3ltf_D 15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEY 48 (58)
T ss_dssp TSCSSCEEEEEEETTEEEEEEEECTTEESSSSCE
T ss_pred cCCCCCEEeCCccCCCCCEEeECCCCCccCCCcc
Confidence 899999985211 144568999999999999983
No 91
>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A
Probab=91.88 E-value=0.087 Score=53.83 Aligned_cols=56 Identities=14% Similarity=0.296 Sum_probs=41.5
Q ss_pred CCCCCceecCC----CC-eeeeCCCccCCCCccCCCCccCCCCCCCCCCCCCcEeeeeccCCCCCeeeCCCCcccCCCC
Q psy12394 361 FHYATGNCAEG----TG-KCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCD 434 (1873)
Q Consensus 361 ~c~n~g~C~~~----~g-~C~C~~G~tG~~Ce~C~~g~~~~~~C~~~~C~n~gtc~~~cd~~~g~~C~C~~g~~G~~Ce 434 (1873)
||+|+|+|.+. .+ +|.|++||+|.+||. ..+ .+|.++ ....|.+.+..+++|..|+
T Consensus 2 pC~nggtC~~~~~~~~~~~C~Cp~g~~G~~Ce~------~~~----~~C~~g--------~G~~YrG~~~~t~sG~~Cq 62 (122)
T 2fd6_A 2 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEI------DKS----KTCYEG--------NGHFYRGKASTDTMGRPCL 62 (122)
T ss_dssp CCCSSCEEEECTTTTTCEEEECCTTEESTTSCE------ESS----CCSBCS--------SCTTCCSCCCBBTTSCBBC
T ss_pred CCCCcCCcCCCcccCCCCCccCCCCCCCccccc------cCc----CCCccc--------ccccceeeccccccCCccc
Confidence 78999999654 24 899999999999995 111 134332 1235789999999999997
No 92
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Probab=91.64 E-value=0.049 Score=48.00 Aligned_cols=28 Identities=18% Similarity=0.555 Sum_probs=23.7
Q ss_pred CCCCCceecC----C--CCeeeeCCCccCCCCcc
Q psy12394 361 FHYATGNCAE----G--TGKCECRPEYTKPDCNS 388 (1873)
Q Consensus 361 ~c~n~g~C~~----~--~g~C~C~~G~tG~~Ce~ 388 (1873)
||+|+|+|.. . .+.|.|++||+|.+||.
T Consensus 15 pC~NGGtC~~~~~~~~~~~~C~C~~Gf~G~~Ce~ 48 (58)
T 3ltf_D 15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEY 48 (58)
T ss_dssp TSCSSCEEEEEEETTEEEEEEEECTTEESSSSCE
T ss_pred cCCCCCEEeCCccCCCCCEEeECCCCCccCCCcc
Confidence 8999999972 2 34899999999999994
No 93
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=90.91 E-value=0.15 Score=62.92 Aligned_cols=64 Identities=20% Similarity=0.507 Sum_probs=46.1
Q ss_pred CCCCCCCCCceecC--CCCeeeeCCCcc---CCCCccCCCCccCCCCCC-CCCCCCCcEeeeeccCCCCCeeeCCCCccc
Q psy12394 357 CQCAFHYATGNCAE--GTGKCECRPEYT---KPDCNSCAFGYFGYPNCE-PCKCHMNGTLDFYCEPASGQQCPCKENYAG 430 (1873)
Q Consensus 357 C~c~~c~n~g~C~~--~~g~C~C~~G~t---G~~Ce~C~~g~~~~~~C~-~~~C~n~gtc~~~cd~~~g~~C~C~~g~~G 430 (1873)
|...++..+++|.+ ..+.|.|++||+ |..|+. +++|. +.+|.+ +|. +...+|.|.|++||++
T Consensus 3 C~~~~~~c~~~C~~~~~~y~C~C~~G~~~~~~~~C~d-------ideC~~~~~C~~--~C~---n~~g~~~C~C~~g~~~ 70 (400)
T 3p5b_L 3 CLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCED-------IDECQDPDTCSQ--LCV---NLEGGYKCQCEEGFQL 70 (400)
T ss_dssp TTTTGGGCSSEEEECSSSEEEECCTTEEECSSSCEEE-------CCCCSTTSSCSS--CCB---CCSSSCBCCCCTTCCC
T ss_pred ccCCCCCCCCEeECCCCCeEEECCCCCCcCCCCcccC-------chhhhccCCCCC--ccC---CCccceeeeccccccc
Confidence 33345555678864 346999999998 788873 77786 467765 552 4456799999999997
Q ss_pred CC
Q psy12394 431 DH 432 (1873)
Q Consensus 431 ~~ 432 (1873)
..
T Consensus 71 ~~ 72 (400)
T 3p5b_L 71 DP 72 (400)
T ss_dssp CT
T ss_pred cc
Confidence 64
No 94
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=90.81 E-value=0.17 Score=62.47 Aligned_cols=55 Identities=24% Similarity=0.699 Sum_probs=40.3
Q ss_pred CCCeeecCCC--ceecCCCCc---CCCCcccCCcccCCCCCC-CCCCCCCCCCCceecCC-CCCcccCCCCCccC
Q psy12394 226 ATGNCAEGTG--KCECRPEYT---KPDCNSCAFGYFGYPNCE-PCKCHMNGTLDFYCEPA-SGQQCPCKENYAGD 293 (1873)
Q Consensus 226 n~g~C~~~~g--~C~C~~G~~---G~~Ce~C~~g~~g~~~C~-~c~C~~~gt~~~~C~~~-~G~~C~C~~g~~G~ 293 (1873)
.+++|.+..+ .|.|++||+ |..|+ ++++|. +.+|.+ .|.+. .+|.|.|.+||++.
T Consensus 10 c~~~C~~~~~~y~C~C~~G~~~~~~~~C~-------dideC~~~~~C~~------~C~n~~g~~~C~C~~g~~~~ 71 (400)
T 3p5b_L 10 CSHVCNDLKIGYECLCPDGFQLVAQRRCE-------DIDECQDPDTCSQ------LCVNLEGGYKCQCEEGFQLD 71 (400)
T ss_dssp CSSEEEECSSSEEEECCTTEEECSSSCEE-------ECCCCSTTSSCSS------CCBCCSSSCBCCCCTTCCCC
T ss_pred CCCEeECCCCCeEEECCCCCCcCCCCccc-------CchhhhccCCCCC------ccCCCccceeeecccccccc
Confidence 4468987654 899999998 78886 356775 456753 45444 46999999998765
No 95
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=89.98 E-value=0.082 Score=64.93 Aligned_cols=67 Identities=24% Similarity=0.636 Sum_probs=15.8
Q ss_pred CCCCCc--cCCCCCCCCCCeeecCC--CceecCCCCc----CCCCcccCCcccCCCCCC-CCCCCCCCCCCceecCC-CC
Q psy12394 212 ETDVCQ--PCQCAFHYATGNCAEGT--GKCECRPEYT----KPDCNSCAFGYFGYPNCE-PCKCHMNGTLDFYCEPA-SG 281 (1873)
Q Consensus 212 ~~~~C~--~C~C~~~~n~g~C~~~~--g~C~C~~G~~----G~~Ce~C~~g~~g~~~C~-~c~C~~~gt~~~~C~~~-~G 281 (1873)
++++|. ++.|. .+|.+.. ++|.|++||+ |..|+ ++++|. +.+|.+ .|.+. .+
T Consensus 2 ~~~~C~~~~~~c~-----~~C~~~~g~~~C~C~~G~~l~~~~~~C~-------d~~eC~~~~~C~~------~C~~~~g~ 63 (386)
T 3v65_B 2 GEENCNVNNGGCA-----QKCQMIRGAVQCTCHTGYRLTEDGRTCQ-------DVNECAEEGYCSQ------GCTNSEGA 63 (386)
T ss_dssp --------------------------------------------------------------CCTT------EEC-----
T ss_pred CcCcccCCCCCCC-----CCCcCCCCCcEeECCCCceECCCCCccC-------ccceeCCcCcccC------cCCCCCCC
Confidence 456776 33443 3786554 5999999999 88995 456775 456763 26544 46
Q ss_pred CcccCCCCCc----cCCCc
Q psy12394 282 QQCPCKENYA----GDHCD 296 (1873)
Q Consensus 282 ~~C~C~~g~~----G~~Ce 296 (1873)
|.|.|++||+ |..|+
T Consensus 64 ~~C~C~~g~~l~~d~~~C~ 82 (386)
T 3v65_B 64 FQCWCEAGYELRPDRRSCK 82 (386)
T ss_dssp CCEECCTTEEECTTSSCEE
T ss_pred CeEEECCCceEcCCCCeEC
Confidence 9999999998 55554
No 96
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=88.40 E-value=0.12 Score=63.56 Aligned_cols=57 Identities=21% Similarity=0.584 Sum_probs=17.4
Q ss_pred ceecCC--CCeeeeCCCcc----CCCCccCCCCccCCCCCC-CCCCCCCcEeeeeccCCCCCeeeCCCCcc----cCCCC
Q psy12394 366 GNCAEG--TGKCECRPEYT----KPDCNSCAFGYFGYPNCE-PCKCHMNGTLDFYCEPASGQQCPCKENYA----GDHCD 434 (1873)
Q Consensus 366 g~C~~~--~g~C~C~~G~t----G~~Ce~C~~g~~~~~~C~-~~~C~n~gtc~~~cd~~~g~~C~C~~g~~----G~~Ce 434 (1873)
.+|... .+.|.|++||+ |..|+. +++|. ..+|.+. |. +...+|.|.|++||+ |..|+
T Consensus 15 ~~C~~~~g~~~C~C~~G~~l~~~~~~C~d-------~~eC~~~~~C~~~--C~---~~~g~~~C~C~~g~~l~~d~~~C~ 82 (386)
T 3v65_B 15 QKCQMIRGAVQCTCHTGYRLTEDGRTCQD-------VNECAEEGYCSQG--CT---NSEGAFQCWCEAGYELRPDRRSCK 82 (386)
T ss_dssp --------------------------------------------CCTTE--EC--------CCEECCTTEEECTTSSCEE
T ss_pred CCCcCCCCCcEeECCCCceECCCCCccCc-------cceeCCcCcccCc--CC---CCCCCCeEEECCCceEcCCCCeEC
Confidence 366433 36899999998 888963 67785 5678764 52 445679999999998 77775
No 97
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Probab=88.05 E-value=0.16 Score=61.02 Aligned_cols=96 Identities=24% Similarity=0.528 Sum_probs=58.6
Q ss_pred CceEEEeeccCCeEEEccCCC--CCCC---------CC-----CCchhhhhheeee----------eeeEeecccccccc
Q psy12394 8 AVWALERSADNGITISLLDHR--PSMK---------NF-----FNSTRLQEWTRAT----------NVRLRLLRTKNLLG 61 (1873)
Q Consensus 8 ~~~~~ers~d~gi~~s~~~~r--p~~~---------~~-----~~s~~l~~~~~at----------~ir~~~~~~~t~~~ 61 (1873)
..-.||.|+|+|....+|..- |+.. .| +++....+|.++| +.|+|..+..
T Consensus 99 ~~V~LeYStd~G~sW~~v~~~c~P~~~~~~C~~~~~~~~~~si~~a~~~~~W~riti~lP~~~~s~~TrFRW~Q~~---- 174 (387)
T 2ddu_A 99 APVLLQYSHDAGMSWFLVKEGCFPASAGKGCEGNSRELSEPTVYYTGDFEEWTRITIAIPRSLASSKTRFRWIQES---- 174 (387)
T ss_dssp CCEEEEEESSTTSCCEESCCCBCTTCCSSSSCTTSCCCBCCSEECTTSCSSCEEEEEECCGGGCSSCCEEEEECC-----
T ss_pred CcEEEEEEeCCCcceEeeecccccCCCCcccccccccccCcceeccccccCceEEEEECChhhcCCcceEEEEccc----
Confidence 345799999999777776311 3221 11 2344557777664 3455553321
Q ss_pred ccccccCCCCCcceeeeEEeeeeeeeeee--ccCCCCCcCccCCCCCCccceeecCCCCCCCC--CCC
Q psy12394 62 HLMSMADQDPTTTRRYFYSIKDISIGGRC--RCNGHADVCDILDPEDPYHRICRCQHNTCGHN--CEV 125 (1873)
Q Consensus 62 ~~~~~~~~~~~~~~~~yYai~d~~v~grC--~C~gHa~~C~~~~~~~~~~~~C~C~h~t~G~~--Ce~ 125 (1873)
.....+.-.||.+|-|+-.| .|+||. .|+ ..+|.|..+|.|.. |..
T Consensus 175 ---------~~~~~~~~WAlD~vyIg~~Cp~~CsGhG-~C~--------~g~C~Cd~G~~g~d~~C~~ 224 (387)
T 2ddu_A 175 ---------SSQKNVPPFGLDGVYISEPCPSYCSGHG-DCI--------SGVCFCDLGYTAAQGTCVS 224 (387)
T ss_dssp --------------CCCCBCCCCEEESCCGGGGGGSE-EEE--------TTEEEECTTEEEETTEEEE
T ss_pred ---------CCcccCcceeEeeEEecccCccccCCCc-eec--------CCeEEecCCcccCCCcccc
Confidence 11112335799999999988 578884 452 25899999999964 553
No 98
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Probab=87.32 E-value=0.19 Score=64.28 Aligned_cols=37 Identities=24% Similarity=0.566 Sum_probs=32.3
Q ss_pred CCCCCCCCCCCCcEeeeecc-CCCCCeeeCC-CCcccCCCCc
Q psy12394 396 YPNCEPCKCHMNGTLDFYCE-PASGQQCPCK-ENYAGDHCDT 435 (1873)
Q Consensus 396 ~~~C~~~~C~n~gtc~~~cd-~~~g~~C~C~-~g~~G~~Ce~ 435 (1873)
.+.|.+.||+|+|+|. + ..++|.|.|+ +||+|.+||.
T Consensus 2 ~d~C~~~PC~ngG~C~---~~~~~~y~C~C~~~G~~G~~Ce~ 40 (553)
T 1q4g_A 2 VNPCCYYPCQHQGICV---RFGLDRYQCDCTRTGYSGPNCTI 40 (553)
T ss_dssp CCGGGGCCCCTTCEEE---EETTTEEEEECTTSSEETTTTCE
T ss_pred CCcCCCCCCCCCCCcC---CCCCCceEeeCCCCCcCCCCCCC
Confidence 3678899999999985 5 6778999999 9999999984
No 99
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...
Probab=85.77 E-value=0.3 Score=62.66 Aligned_cols=37 Identities=22% Similarity=0.542 Sum_probs=31.1
Q ss_pred CCCCCCCCCCCcEeeeeccCCCCCeeeCC-CCcccCCCCc
Q psy12394 397 PNCEPCKCHMNGTLDFYCEPASGQQCPCK-ENYAGDHCDT 435 (1873)
Q Consensus 397 ~~C~~~~C~n~gtc~~~cd~~~g~~C~C~-~g~~G~~Ce~ 435 (1873)
+.|.+.||+|+|+|.. +..++|.|.|+ +||+|.+||.
T Consensus 2 d~C~s~PC~ngG~C~~--~~~~~y~C~C~~~G~~G~~Ce~ 39 (587)
T 3nt1_A 2 NPCCSNPCQNRGECMS--TGFDQYKCDCTRTGFYGENCTT 39 (587)
T ss_dssp CTTTTCCCCTTCEEEE--EETTEEEEECTTSSEETTTTCE
T ss_pred CCCCCCCCCCCCEeeC--CCCCCeEEecCCCCccCCCCCC
Confidence 6789999999999841 23467999999 9999999984
No 100
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A
Probab=85.59 E-value=0.31 Score=51.96 Aligned_cols=36 Identities=22% Similarity=0.641 Sum_probs=30.7
Q ss_pred CCCCCCCCCCCcEeeeeccCCCCCeeeCCCCcccCCCCc
Q psy12394 397 PNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDT 435 (1873)
Q Consensus 397 ~~C~~~~C~n~gtc~~~cd~~~g~~C~C~~g~~G~~Ce~ 435 (1873)
+.|.+.||.++|+|. +..++|+|.|++||+|.+||.
T Consensus 120 ~~c~~~~C~~~g~C~---~~~~~~~c~C~~g~~G~~Ce~ 155 (162)
T 1g1s_A 120 ASCQDMSCSKQGECL---ETIGNYTCSCYPGFYGPECEY 155 (162)
T ss_dssp CCCCTTGGGGSEEEE---ECSSSEEEEECTTEESTTSCE
T ss_pred CCCcCCCCCCCCEEe---cCCCCceEeCCCCCcCccccc
Confidence 457778999999985 567789999999999999983
No 101
>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*
Probab=82.53 E-value=1.1 Score=47.11 Aligned_cols=58 Identities=17% Similarity=0.476 Sum_probs=38.3
Q ss_pred CCCCCCCCCCeeecC---C-C-ceecCCCCcCCCCcccCCcccCCCCCCCCCCCCCCCCCceecCCCCCcccCCCCCccC
Q psy12394 219 CQCAFHYATGNCAEG---T-G-KCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGD 293 (1873)
Q Consensus 219 C~C~~~~n~g~C~~~---~-g-~C~C~~G~~G~~Ce~C~~g~~g~~~C~~c~C~~~gt~~~~C~~~~G~~C~C~~g~~G~ 293 (1873)
|+|. |+|+|.+. . . +|.|++||+|..|++ .... +|... ....|+......++|.
T Consensus 13 cpC~---NGGtC~~~~~~s~~~~C~Cp~g~~G~~Cei------~~~~----~C~~g--------~G~~YrG~~s~T~sG~ 71 (145)
T 2i9a_A 13 CDCL---NGGTCVSNKYFSNIHWCNCPKKFGGQHCEI------DKSK----TCYEG--------NGHFYRGKASTDTMGR 71 (145)
T ss_dssp CCCC---TTCEEEECSSSTTCEEEECCTTEESTTSCE------ESSC----CEECT--------TCTTCCSCCCBBTTSC
T ss_pred CCCC---CCCCcCCCccccCCccccCCCCCCCCceec------cccc----cCCCC--------CccccccceecCCcCC
Confidence 4555 99999765 2 2 799999999999996 2111 23321 0123667777777888
Q ss_pred CCcc
Q psy12394 294 HCDT 297 (1873)
Q Consensus 294 ~Ce~ 297 (1873)
.|+.
T Consensus 72 ~Cq~ 75 (145)
T 2i9a_A 72 PCLP 75 (145)
T ss_dssp BCCC
T ss_pred cccC
Confidence 8875
No 102
>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A
Probab=82.01 E-value=0.63 Score=39.61 Aligned_cols=32 Identities=28% Similarity=0.700 Sum_probs=24.8
Q ss_pred CCCCCCcEeeeeccCCCCCeeeCCCCcccCCCCc
Q psy12394 402 CKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDT 435 (1873)
Q Consensus 402 ~~C~n~gtc~~~cd~~~g~~C~C~~g~~G~~Ce~ 435 (1873)
..|.| |+|.+ ......+.|.|++||+|.+||.
T Consensus 14 ~yC~n-G~C~~-~~~~~~~~C~C~~gy~G~RCe~ 45 (50)
T 1iox_A 14 HYCIK-GRCRF-VVAEQTPSCVCDEGYIGARCER 45 (50)
T ss_dssp TSCTT-CCEEE-ETTTTEEEECCCTTEETTTTCE
T ss_pred CcccC-CEEEe-EcCCCCeEEECCCCcccCCCCe
Confidence 56888 78864 2444557899999999999983
No 103
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A
Probab=81.96 E-value=0.88 Score=38.71 Aligned_cols=32 Identities=25% Similarity=0.615 Sum_probs=24.9
Q ss_pred CCCCCCcEeeeeccCCCCCeeeCCCCcccCCCCc
Q psy12394 402 CKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDT 435 (1873)
Q Consensus 402 ~~C~n~gtc~~~cd~~~g~~C~C~~g~~G~~Ce~ 435 (1873)
..|.|| +|.+ ....+.+.|.|++||+|.+||.
T Consensus 14 ~yC~nG-~C~~-~~~~~~~~C~C~~gy~G~RCe~ 45 (50)
T 3e50_C 14 QFCFHG-TCRF-LVQEDKPACVCHSGYVGARCEH 45 (50)
T ss_pred CcccCC-EEee-ccCCCCeEEECCCCCcccCCCc
Confidence 468886 8864 2345667999999999999983
No 104
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Probab=81.56 E-value=0.82 Score=49.53 Aligned_cols=23 Identities=35% Similarity=0.938 Sum_probs=21.9
Q ss_pred CcccCCCcceecCCCCCCCCCcc
Q psy12394 655 GVSCDDDGKCQCEKNFGGDRCER 677 (1873)
Q Consensus 655 gg~C~~~g~C~C~~g~~G~~Ce~ 677 (1873)
||.|...++|.|++||+|.+|+.
T Consensus 158 gG~Cv~P~~C~C~~Gw~G~~C~~ 180 (188)
T 2ygo_A 158 GGFCNERRICECPDGFHGPHCEG 180 (188)
T ss_dssp TCEECTTSCEECCTTCBTTTTCB
T ss_pred CCEeCCCCcccCcCCCCCCCCcC
Confidence 89999999999999999999986
No 105
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A
Probab=80.88 E-value=0.55 Score=49.97 Aligned_cols=32 Identities=31% Similarity=0.749 Sum_probs=25.8
Q ss_pred CCCCCCCCCceecCC--CCeeeeCCCccCCCCcc
Q psy12394 357 CQCAFHYATGNCAEG--TGKCECRPEYTKPDCNS 388 (1873)
Q Consensus 357 C~c~~c~n~g~C~~~--~g~C~C~~G~tG~~Ce~ 388 (1873)
|...||.++++|.+. .++|.|++||+|.+||.
T Consensus 122 c~~~~C~~~g~C~~~~~~~~c~C~~g~~G~~Ce~ 155 (162)
T 1g1s_A 122 CQDMSCSKQGECLETIGNYTCSCYPGFYGPECEY 155 (162)
T ss_dssp CCTTGGGGSEEEEECSSSEEEEECTTEESTTSCE
T ss_pred CcCCCCCCCCEEecCCCCceEeCCCCCcCccccc
Confidence 334678889999754 35999999999999995
No 106
>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1
Probab=79.96 E-value=0.76 Score=42.81 Aligned_cols=32 Identities=19% Similarity=0.560 Sum_probs=24.9
Q ss_pred CCCCCCCcEeeeeccCCCCCeeeCCCCcccCCCC
Q psy12394 401 PCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCD 434 (1873)
Q Consensus 401 ~~~C~n~gtc~~~cd~~~g~~C~C~~g~~G~~Ce 434 (1873)
...|.|| +|.+. .....+.|.|++||+|.+||
T Consensus 45 ~~yClnG-~C~~i-~~~~~~~C~C~~GYtG~RCE 76 (79)
T 1xdt_R 45 KDFCIHG-ECKYV-KELRAPSCICHPGYHGERCH 76 (79)
T ss_dssp TTCCSSE-EECCB-GGGTBCCEEECTTEESTTCC
T ss_pred cCcCCCC-Eeeee-cCCCCeEEEcCCCccccccc
Confidence 5678886 88532 33456799999999999997
No 107
>3urf_Z Tumor necrosis factor receptor superfamily member; cystein-rich domain, beta-sandwich, cytokine; HET: NAG; 2.70A {Homo sapiens} PDB: 4e4d_R
Probab=78.60 E-value=0.99 Score=48.73 Aligned_cols=48 Identities=23% Similarity=0.515 Sum_probs=26.8
Q ss_pred CCCCcCCCCCcCCCC--CCCCcccc--CCCCCCCCCCcccCC-CceeeccCCcc
Q psy12394 1271 KKCDQCEPNTFGYDP--IIGCEECN--CHPHGVNGTQQCDLF-DGSCSCKENIV 1319 (1873)
Q Consensus 1271 ~~C~~C~~g~~g~~~--~~~C~~C~--C~~~gs~~~~~C~~~-~G~C~C~~~~~ 1319 (1873)
..|..|.+|+|.... ...|++|. |...... ...|... .-+|.|++|+.
T Consensus 39 t~C~~C~~gty~~~~n~~~~C~~C~~~C~~~~~~-~~~CT~tsdtvC~C~~G~~ 91 (171)
T 3urf_Z 39 TVCAPCPDHYYTDSWHTSDECLYCSPVCKELQYV-KQECNRTHNRVCECKEGRY 91 (171)
T ss_dssp CEEEECCTTEECCSCBCCSSCEECCCCCCTTEEE-EECCCSSSCCEEEECTTEE
T ss_pred CccccCCCCcEecCCCCCCccccCcCccCCCCEE-eccCcCCCCccccCCCCcE
Confidence 456778888887543 35688887 6532111 1235432 34566666553
No 108
>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=77.81 E-value=1.6 Score=37.18 Aligned_cols=31 Identities=26% Similarity=0.714 Sum_probs=24.2
Q ss_pred CCCCCCcEeeeeccCCCCCeeeCCCCcccCCCC
Q psy12394 402 CKCHMNGTLDFYCEPASGQQCPCKENYAGDHCD 434 (1873)
Q Consensus 402 ~~C~n~gtc~~~cd~~~g~~C~C~~g~~G~~Ce 434 (1873)
..|.| |+|.+ ....+.+.|.|++||+|.+||
T Consensus 18 ~yC~n-G~C~~-i~~~~~~~C~C~~gy~G~RCe 48 (50)
T 2rnl_A 18 NFCIH-GECKY-IEHLEAVTCKCQQEYFGERCG 48 (50)
T ss_dssp GTCSS-SEEEE-ETTTTEEEEECCSSCCSSSCC
T ss_pred CcCCC-CEEEE-ecCCCCeeEECCCCccccccc
Confidence 56887 59864 344555789999999999997
No 109
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A
Probab=77.81 E-value=1.2 Score=37.92 Aligned_cols=28 Identities=21% Similarity=0.650 Sum_probs=22.0
Q ss_pred CCCCCCceecC----CCCeeeeCCCccCCCCcc
Q psy12394 360 AFHYATGNCAE----GTGKCECRPEYTKPDCNS 388 (1873)
Q Consensus 360 ~~c~n~g~C~~----~~g~C~C~~G~tG~~Ce~ 388 (1873)
+.|.|| +|.. ....|.|++||+|.+||.
T Consensus 14 ~yC~nG-~C~~~~~~~~~~C~C~~gy~G~RCe~ 45 (50)
T 3e50_C 14 QFCFHG-TCRFLVQEDKPACVCHSGYVGARCEH 45 (50)
T ss_pred CcccCC-EEeeccCCCCeEEECCCCCcccCCCc
Confidence 456776 9963 235999999999999984
No 110
>1jma_B Herpesvirus entry mediator; V-type IG molecule and TNFR superfamily, viral protein; HET: NAG; 2.65A {Human herpesvirus 1} SCOP: g.24.1.1 g.24.1.1 PDB: 2aw2_B*
Probab=76.90 E-value=0.88 Score=48.98 Aligned_cols=44 Identities=27% Similarity=0.730 Sum_probs=26.4
Q ss_pred cCCCCCCCCCccCCCCCcCCCCCCCccccCCCceEEecCCccCCCCCcCCCCCcCCC--CCCCCccc
Q psy12394 1228 GRRCEMCATGYYGFPDCHPCNCPFTAVCDSYTGECICAARVIGKKCDQCEPNTFGYD--PIIGCEEC 1292 (1873)
Q Consensus 1228 G~~C~~C~~g~~~~~~C~~C~C~~~~~C~~~tg~C~C~~~~~G~~C~~C~~g~~g~~--~~~~C~~C 1292 (1873)
|..|..|++|+|-...|.. .....|..|.+|+|... ....|++|
T Consensus 13 ~~~C~~CppG~~~~~~C~~---------------------~~~t~C~~Cp~GtY~~~~n~~~~C~~C 58 (167)
T 1jma_B 13 SECCPKCSPGYRVKEACGE---------------------LTGTVCEPCPPGTYIAHLNGLSKCLQC 58 (167)
T ss_dssp TBCCBCBCTTEEEEECCCS---------------------SSCCEEEECCTTEECSSCBCSSCCEEC
T ss_pred CcCCCCCCCCCEeccCCCC---------------------CCCCcCCcCCCCccccccCcCccccCC
Confidence 5678899999876433211 12345667788877642 22457766
No 111
>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*
Probab=75.75 E-value=1.5 Score=46.01 Aligned_cols=35 Identities=29% Similarity=0.663 Sum_probs=25.5
Q ss_pred CCCCCCCCcEeeeeccCCCCC-eeeCCCCcccCCCCc
Q psy12394 400 EPCKCHMNGTLDFYCEPASGQ-QCPCKENYAGDHCDT 435 (1873)
Q Consensus 400 ~~~~C~n~gtc~~~cd~~~g~-~C~C~~g~~G~~Ce~ 435 (1873)
..+||+|||+|... .-..++ .|.|++||+|.+|+.
T Consensus 11 ~~cpC~NGGtC~~~-~~~s~~~~C~Cp~g~~G~~Cei 46 (145)
T 2i9a_A 11 SNCDCLNGGTCVSN-KYFSNIHWCNCPKKFGGQHCEI 46 (145)
T ss_dssp -CCCCCTTCEEEEC-SSSTTCEEEECCTTEESTTSCE
T ss_pred CCCCCCCCCCcCCC-ccccCCccccCCCCCCCCceec
Confidence 34599999998421 112455 799999999999984
No 112
>3qd6_R CD40L receptor, tumor necrosis factor receptor superfamily member; immune regulator, cytokine-cytokine receptor compl; HET: NAG; 3.50A {Homo sapiens}
Probab=73.76 E-value=2.9 Score=45.42 Aligned_cols=27 Identities=22% Similarity=0.528 Sum_probs=5.4
Q ss_pred cccCCCCcCCCCccccCCCCCCCCccc
Q psy12394 1364 VYGAACDVCKEGTFDIQADNVDGCTRC 1390 (1873)
Q Consensus 1364 ~~G~~Cd~C~~g~~g~~~~~~~gC~~C 1390 (1873)
.....|..|.+|||.........|+++
T Consensus 118 ~~dt~C~~C~~Gtfs~~~s~~~~C~p~ 144 (177)
T 3qd6_R 118 VSDTICEPCPVGFFSNVSSAFEKCHPW 144 (177)
T ss_dssp SCCCCCCC-------------------
T ss_pred CCCCccccCCCCcccCCCCCCCcCcCc
Confidence 345678889999997654334555554
No 113
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Probab=73.42 E-value=2 Score=46.50 Aligned_cols=24 Identities=33% Similarity=0.861 Sum_probs=22.0
Q ss_pred CCcccCCCCceeeCCCcccCCCCc
Q psy12394 699 IGVSCDDDGKCQCEKNFGGDRCER 722 (1873)
Q Consensus 699 ~~~~C~~~g~C~C~~g~~G~~Ce~ 722 (1873)
++|.|...++|.|++||+|..|+.
T Consensus 157 ngG~Cv~P~~C~C~~Gw~G~~C~~ 180 (188)
T 2ygo_A 157 NGGFCNERRICECPDGFHGPHCEG 180 (188)
T ss_dssp TTCEECTTSCEECCTTCBTTTTCB
T ss_pred CCCEeCCCCcccCcCCCCCCCCcC
Confidence 388999999999999999999986
No 114
>1sg1_X Tumor necrosis factor receptor superfamily member 16; nerve growth factor, NGF, neurotrophin, common neurotrophin receptor; 2.40A {Rattus norvegicus} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 g.24.1.1 PDB: 3buk_C* 3ij2_X
Probab=73.36 E-value=2.3 Score=45.31 Aligned_cols=25 Identities=40% Similarity=0.981 Sum_probs=16.1
Q ss_pred cCCCCcCCCCccccCCCCCCCCccc
Q psy12394 1366 GAACDVCKEGTFDIQADNVDGCTRC 1390 (1873)
Q Consensus 1366 G~~Cd~C~~g~~g~~~~~~~gC~~C 1390 (1873)
...|..|.+|+|.........|++|
T Consensus 115 dt~C~~C~~Gtfs~~~~~~~~C~~c 139 (161)
T 1sg1_X 115 NTVCEECPEGTYSDEANHVDPCLPC 139 (161)
T ss_dssp CCEEEECCTTEECCSCBSSCCCEEC
T ss_pred CCcccCCCCCceeCCCCCCCcCCcC
Confidence 4567788999987554334556655
No 115
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A 3u3s_A 3u3t_A 3u3v_A 3qo4_A
Probab=73.32 E-value=2.3 Score=49.85 Aligned_cols=97 Identities=23% Similarity=0.542 Sum_probs=48.0
Q ss_pred CCCCcCCCCCcCCCC--CCCCcccc--CCCCCCCCCCcccCC-CceeeccCCcccCCCcccCCCcccC-CCCCCc-cccC
Q psy12394 1271 KKCDQCEPNTFGYDP--IIGCEECN--CHPHGVNGTQQCDLF-DGSCSCKENIVGRTCDHCVEGHWSF-PYCVPC-ECDL 1343 (1873)
Q Consensus 1271 ~~C~~C~~g~~g~~~--~~~C~~C~--C~~~gs~~~~~C~~~-~G~C~C~~~~~G~~C~~C~~G~~g~-p~C~~C-~C~~ 1343 (1873)
..|..|.+|+|.... ...|.+|. |.. |......|... .-+|.|++|+ |-. ..|.+| .|.+
T Consensus 45 t~C~pCp~GtYt~~~N~~~~C~~C~~~C~~-g~~~~~~CT~TsDtvC~C~~G~------------y~~~~~C~~Ct~Cpp 111 (313)
T 3u3p_A 45 RVCSSCPVGTFTRHENGIEKCHDCSQPCPW-PMIEKLPCAALTDRECTCPPGM------------FQSNATCAPHTVCPV 111 (313)
T ss_dssp CEEEECCTTEECCSCBCCSSCEECCCCCCT-TCEEEECSBTTBCCEEECCTTE------------EEETTEEEECCCBCT
T ss_pred CccccCCCCceeccCCCCCcCcccccccCC-CCEEecCCcCCCCccccCCCCc------------eeccccccccccCCC
Confidence 456678888776432 35688887 753 33112345432 2356666555 321 124333 2222
Q ss_pred CCccccccCCCCceeeccCccccCCCCcCCCCccccCCCCCCCCccc
Q psy12394 1344 RGTTIDICNQGTAECYCKKNVYGAACDVCKEGTFDIQADNVDGCTRC 1390 (1873)
Q Consensus 1344 ~gs~~~~Cd~~~G~C~C~~~~~G~~Cd~C~~g~~g~~~~~~~gC~~C 1390 (1873)
+--.... |. ......|..|.+|||........-|.+|
T Consensus 112 G~gV~~~---------cT-~tsDTvC~~Cp~GTFSd~~Ss~~~C~pc 148 (313)
T 3u3p_A 112 GWGVRKK---------GT-ETEDVRCKQCARGTFSDVPSSVMKCKAY 148 (313)
T ss_dssp TEEEEEC---------CC-SSSCCEEEECCTTEECCSCBSSCCCEEC
T ss_pred CCeeeec---------CC-CCCCCccccCCCCeecCCCCCCcccccC
Confidence 1000111 11 1234577779999997654344556655
No 116
>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A
Probab=72.71 E-value=1.3 Score=37.64 Aligned_cols=28 Identities=25% Similarity=0.680 Sum_probs=21.5
Q ss_pred CCCCCCceec--CC--CCeeeeCCCccCCCCcc
Q psy12394 360 AFHYATGNCA--EG--TGKCECRPEYTKPDCNS 388 (1873)
Q Consensus 360 ~~c~n~g~C~--~~--~g~C~C~~G~tG~~Ce~ 388 (1873)
+.|.| |+|. .. ...|.|++||+|.+||.
T Consensus 14 ~yC~n-G~C~~~~~~~~~~C~C~~gy~G~RCe~ 45 (50)
T 1iox_A 14 HYCIK-GRCRFVVAEQTPSCVCDEGYIGARCER 45 (50)
T ss_dssp TSCTT-CCEEEETTTTEEEECCCTTEETTTTCE
T ss_pred CcccC-CEEEeEcCCCCeEEECCCCcccCCCCe
Confidence 45778 7884 22 24899999999999994
No 117
>3urf_Z Tumor necrosis factor receptor superfamily member; cystein-rich domain, beta-sandwich, cytokine; HET: NAG; 2.70A {Homo sapiens} PDB: 4e4d_R
Probab=72.67 E-value=3.9 Score=44.06 Aligned_cols=27 Identities=33% Similarity=0.853 Sum_probs=19.1
Q ss_pred CCccEEcCCCCCcCCCC-CCCcccC-CCC
Q psy12394 1445 GDSCQYCAPGYYGNAVS-LKNCVKC-NCN 1471 (1873)
Q Consensus 1445 G~~c~~c~pg~yG~~~~-~~~c~~c-~c~ 1471 (1873)
...|..|.+|+|-+..+ ...|+++ +|.
T Consensus 118 dt~C~~C~~Gtfs~~~ss~~~C~p~T~C~ 146 (171)
T 3urf_Z 118 NTVCKRCPDGFFSNETSSKAPCRKHTNCS 146 (171)
T ss_dssp CCEEEECCTTEECSSCBSSCCCEECCCCS
T ss_pred CcccccCCCCcccCCCCCCCccccCCccC
Confidence 34688899999977653 4567777 554
No 118
>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl, rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP signaling protein; 2.01A {Mus musculus} PDB: 3me2_R 3qbq_B 4giq_R* 3nzy_B
Probab=72.45 E-value=1.1 Score=50.22 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=18.2
Q ss_pred ccCCCCcCCCCccccCCCCCCCCccc
Q psy12394 1365 YGAACDVCKEGTFDIQADNVDGCTRC 1390 (1873)
Q Consensus 1365 ~G~~Cd~C~~g~~g~~~~~~~gC~~C 1390 (1873)
....|..|.+|||.........|++|
T Consensus 146 ~Dt~C~~C~~GtFs~~~s~~~~C~p~ 171 (216)
T 3me4_A 146 KDTVCTPCLLGFFSDVFSSTDKCKPW 171 (216)
T ss_dssp SCCCEEECCTTEECCSCBSSCCCEEC
T ss_pred CCCccccCCCceecCCCCCCCccccC
Confidence 34578789999997664455666665
No 119
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Probab=72.13 E-value=1.6 Score=55.70 Aligned_cols=64 Identities=27% Similarity=0.585 Sum_probs=44.1
Q ss_pred CCCCccccCCCceEEecCCcc--CCCCCcCCCCCcCCCC-CCCCccccCCCCCCCCCCcccCCCceeeccCCc
Q psy12394 1249 CPFTAVCDSYTGECICAARVI--GKKCDQCEPNTFGYDP-IIGCEECNCHPHGVNGTQQCDLFDGSCSCKENI 1318 (1873)
Q Consensus 1249 C~~~~~C~~~tg~C~C~~~~~--G~~C~~C~~g~~g~~~-~~~C~~C~C~~~gs~~~~~C~~~~G~C~C~~~~ 1318 (1873)
|...+..-..+|+|.|.+||+ |..|+.|.+|+|.... ...|++|+-|.+.. +.....|.|..+|
T Consensus 252 C~~dG~w~~p~G~C~C~~G~e~~~~~C~aC~~g~~k~~~~~~~C~~CP~~S~s~------~~Gs~~C~C~ng~ 318 (536)
T 3fl7_A 252 CAVDGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCLECPEHTLPS------PEGATSCECEEGF 318 (536)
T ss_dssp ECTTSCBCCCBCCCEECTTEEEETTEEEECCTTEECCSCCSSCCEECCSSEECC------CTTCSSCEECTTC
T ss_pred EcCCCCEecccCcEeccCccccCCceeeecCCCCCcccCCCCccccCCCCCCCC------CCCccEEEEeccc
Confidence 333444555689999999996 6789999999998654 34599988765432 2234467766543
No 120
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A
Probab=71.62 E-value=26 Score=36.29 Aligned_cols=95 Identities=11% Similarity=0.176 Sum_probs=53.6
Q ss_pred CCCceEEEeeccCCCccEEEEEEeecCCCCCccceEEEecCeeeeeccccccCCCCCCcceeEecCCCceeeeecc-ceE
Q psy12394 1046 HKDAMVDIAGTVNNPGAYVFVVHFYQPDFPEFDMDVLIQNGQFYEAQLPVKHCPARSGCRAVVQQTNGNRMFTLEK-NIV 1124 (1873)
Q Consensus 1046 ~~~~~~~~~~~v~~~g~Yv~vi~y~~~~~~~~~~~v~~~~~~~~~g~~~~~~c~~~~~Cr~vv~~~~~~~~~~l~~-~~~ 1124 (1873)
..+..+.+...|+..|.|.|.|+|.++....-.+.|.|++ ....+.+.+.. ...=.... .....+.|.+ .-+
T Consensus 37 ~~g~~v~~~V~v~~aG~Y~l~~ryan~~~~~~~~~l~VNG-~~~~~~v~~p~---Tg~w~~w~---~~~~~v~L~aG~nt 109 (144)
T 2w47_A 37 EVGGYIEWNVNAPSSGSYALIFRYANGTTANRPMRITVNG-NIVKPSMDFVS---TGAWTTWN---EAGIVANLNQGNNV 109 (144)
T ss_dssp STTCEEEEEEEESSSEEEEEEEEEECCSSSCCCEEEEETT-EEEEEEECCCC---CSSTTCCE---EEEEEEEECSEEEE
T ss_pred CCCCEEEEEEECCCCcEEEEEEEEECCCCCCeEEEEEECC-eEeeeEEEecC---CCCCCeeE---EEEEEEEECCCccE
Confidence 4567788888899999999999999865434455565554 32122222210 00000000 0123456666 345
Q ss_pred EEEeCCC-CceeEEEEEEEeeCcc
Q psy12394 1125 ATFKEPN-HKSVWLDYILLIPANE 1147 (1873)
Q Consensus 1125 ~~l~~~~-~~~~~ld~v~lip~~~ 1147 (1873)
|+|.... ...+.||+|.+.|...
T Consensus 110 I~l~~~~~~g~~niD~i~v~~~~~ 133 (144)
T 2w47_A 110 IRATAIASDGGPNVDYLKVFSANA 133 (144)
T ss_dssp EEEEECSTTCCCEEEEEEEEECTT
T ss_pred EEEEEeCCCCCEEEeEEEEEeCCC
Confidence 6665322 2357899999998743
No 121
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...
Probab=71.33 E-value=1.6 Score=56.03 Aligned_cols=34 Identities=24% Similarity=0.771 Sum_probs=27.7
Q ss_pred CCCccCCCCCCCCCCeeec---CCCceecC-CCCcCCCCcc
Q psy12394 214 DVCQPCQCAFHYATGNCAE---GTGKCECR-PEYTKPDCNS 250 (1873)
Q Consensus 214 ~~C~~C~C~~~~n~g~C~~---~~g~C~C~-~G~~G~~Ce~ 250 (1873)
++|.+-+|. |+|+|.+ ..+.|.|+ +||+|.+||.
T Consensus 2 d~C~s~PC~---ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~ 39 (587)
T 3nt1_A 2 NPCCSNPCQ---NRGECMSTGFDQYKCDCTRTGFYGENCTT 39 (587)
T ss_dssp CTTTTCCCC---TTCEEEEEETTEEEEECTTSSEETTTTCE
T ss_pred CCCCCCCCC---CCCEeeCCCCCCeEEecCCCCccCCCCCC
Confidence 567665665 9999985 34699999 9999999996
No 122
>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1
Probab=69.16 E-value=2.3 Score=39.66 Aligned_cols=29 Identities=24% Similarity=0.619 Sum_probs=22.1
Q ss_pred CCCCCCCceecC----CCCeeeeCCCccCCCCcc
Q psy12394 359 CAFHYATGNCAE----GTGKCECRPEYTKPDCNS 388 (1873)
Q Consensus 359 c~~c~n~g~C~~----~~g~C~C~~G~tG~~Ce~ 388 (1873)
-+.|.|| +|.. ....|.|.+||+|.+||.
T Consensus 45 ~~yClnG-~C~~i~~~~~~~C~C~~GYtG~RCE~ 77 (79)
T 1xdt_R 45 KDFCIHG-ECKYVKELRAPSCICHPGYHGERCHG 77 (79)
T ss_dssp TTCCSSE-EECCBGGGTBCCEEECTTEESTTCCE
T ss_pred cCcCCCC-EeeeecCCCCeEEEcCCCcccccccc
Confidence 3567776 8942 235899999999999984
No 123
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Probab=68.40 E-value=2.3 Score=54.42 Aligned_cols=34 Identities=29% Similarity=0.860 Sum_probs=28.4
Q ss_pred CCCccCCCCCCCCCCeeec-CC--CceecC-CCCcCCCCcc
Q psy12394 214 DVCQPCQCAFHYATGNCAE-GT--GKCECR-PEYTKPDCNS 250 (1873)
Q Consensus 214 ~~C~~C~C~~~~n~g~C~~-~~--g~C~C~-~G~~G~~Ce~ 250 (1873)
++|.+-+|. |+|+|.+ .. ++|.|+ +||+|.+||.
T Consensus 3 d~C~~~PC~---ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~ 40 (553)
T 1q4g_A 3 NPCCYYPCQ---HQGICVRFGLDRYQCDCTRTGYSGPNCTI 40 (553)
T ss_dssp CGGGGCCCC---TTCEEEEETTTEEEEECTTSSEETTTTCE
T ss_pred CcCCCCCCC---CCCCcCCCCCCceEeeCCCCCcCCCCCCC
Confidence 567766666 9999988 54 499999 9999999996
No 124
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Probab=68.11 E-value=2.1 Score=54.70 Aligned_cols=55 Identities=22% Similarity=0.610 Sum_probs=36.9
Q ss_pred cccCCCceeeccCCcc--cCCCcccCCCcccC----CCCCCccccCCCccccccCCCCceeeccCc
Q psy12394 1304 QCDLFDGSCSCKENIV--GRTCDHCVEGHWSF----PYCVPCECDLRGTTIDICNQGTAECYCKKN 1363 (1873)
Q Consensus 1304 ~C~~~~G~C~C~~~~~--G~~C~~C~~G~~g~----p~C~~C~C~~~gs~~~~Cd~~~G~C~C~~~ 1363 (1873)
....-.|+|.|++||. |..|+.|.+|||.. ..|++|+-+.. .-+.....|.|..+
T Consensus 257 ~w~~p~G~C~C~~G~e~~~~~C~aC~~g~~k~~~~~~~C~~CP~~S~-----s~~~Gs~~C~C~ng 317 (536)
T 3fl7_A 257 EWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCLECPEHTL-----PSPEGATSCECEEG 317 (536)
T ss_dssp CBCCCBCCCEECTTEEEETTEEEECCTTEECCSCCSSCCEECCSSEE-----CCCTTCSSCEECTT
T ss_pred CEecccCcEeccCccccCCceeeecCCCCCcccCCCCccccCCCCCC-----CCCCCccEEEEecc
Confidence 4445579999999998 77899999999973 24776654422 12334455666554
No 125
>3alq_R Tumor necrosis factor receptor superfamily member; ligand-receptor complex, cytokine, cytokine-cytokine recepto; 3.00A {Homo sapiens}
Probab=67.42 E-value=1.9 Score=46.65 Aligned_cols=23 Identities=30% Similarity=0.687 Sum_probs=14.2
Q ss_pred CCCCcCCCCccccCCCCCCCCcc
Q psy12394 1367 AACDVCKEGTFDIQADNVDGCTR 1389 (1873)
Q Consensus 1367 ~~Cd~C~~g~~g~~~~~~~gC~~ 1389 (1873)
..|..|.+|+|.....+...|++
T Consensus 127 t~C~~C~~Gtfs~~~s~~~~C~p 149 (173)
T 3alq_R 127 VVCKPCAPGTFSNTTSSTDICRP 149 (173)
T ss_dssp CEEEECCTTEECCCCBSSCCCEE
T ss_pred CcccCCCCCeecCCCCCCccCCC
Confidence 45777889998754333444444
No 126
>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl, rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP signaling protein; 2.01A {Mus musculus} PDB: 3me2_R 3qbq_B 4giq_R* 3nzy_B
Probab=67.31 E-value=4.5 Score=45.29 Aligned_cols=26 Identities=19% Similarity=0.462 Sum_probs=18.8
Q ss_pred cccccccCCCCcCCCCCCCCCCccCC
Q psy12394 1499 GRICDECRPLYWNLKASNPDGCEDCD 1524 (1873)
Q Consensus 1499 G~~Cd~C~~~y~~~~~~~~~~C~~C~ 1524 (1873)
...|..|.+|+|....+..+.|++|.
T Consensus 147 Dt~C~~C~~GtFs~~~s~~~~C~p~T 172 (216)
T 3me4_A 147 DTVCTPCLLGFFSDVFSSTDKCKPWT 172 (216)
T ss_dssp CCCEEECCTTEECCSCBSSCCCEECC
T ss_pred CCccccCCCceecCCCCCCCccccCC
Confidence 34677899999988654566777774
No 127
>3k51_B Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity, cytokine, D bond, glycoprotein, membrane, secreted, signal-anchor, transmembrane, apoptosis; 2.45A {Homo sapiens} PDB: 3mi8_D 3mhd_D
Probab=66.59 E-value=3.2 Score=44.99 Aligned_cols=45 Identities=24% Similarity=0.760 Sum_probs=22.1
Q ss_pred CCCcccCCCccc-----CCCCCCcc--ccCCCccccccCCC-CceeeccCccc
Q psy12394 1321 RTCDHCVEGHWS-----FPYCVPCE--CDLRGTTIDICNQG-TAECYCKKNVY 1365 (1873)
Q Consensus 1321 ~~C~~C~~G~~g-----~p~C~~C~--C~~~gs~~~~Cd~~-~G~C~C~~~~~ 1365 (1873)
..|..|.+|.|- ...|++|. |...-.+...|... +-+|.|++|+.
T Consensus 41 t~C~pC~~gtY~~~~n~~~~C~~C~~~C~~~~~~~~~Ct~tsdtvC~C~~G~~ 93 (176)
T 3k51_B 41 TTCGPCPPRHYTQFWNYLERCRYCNVLCGEREEEARACHATHNRACRCRTGFF 93 (176)
T ss_dssp CEEEECCTTEECCSCBCCSSCEECCCCCCSSEEEEECCBTTBCCEEEECTTEE
T ss_pred CccccCCCCCeecCCCCCCcCccccCcCCCCCEEeccCcCCCCceeeccCCee
Confidence 455566666663 23577664 55321122334332 45566666543
No 128
>3qd6_R CD40L receptor, tumor necrosis factor receptor superfamily member; immune regulator, cytokine-cytokine receptor compl; HET: NAG; 3.50A {Homo sapiens}
Probab=66.49 E-value=9.7 Score=41.22 Aligned_cols=26 Identities=19% Similarity=0.487 Sum_probs=3.9
Q ss_pred cccccccCCCCcCCCCCCCCCCccCC
Q psy12394 1499 GRICDECRPLYWNLKASNPDGCEDCD 1524 (1873)
Q Consensus 1499 G~~Cd~C~~~y~~~~~~~~~~C~~C~ 1524 (1873)
...|..|.+|+|....+..+.|+++.
T Consensus 120 dt~C~~C~~Gtfs~~~s~~~~C~p~t 145 (177)
T 3qd6_R 120 DTICEPCPVGFFSNVSSAFEKCHPWT 145 (177)
T ss_dssp CCCCCC--------------------
T ss_pred CCccccCCCCcccCCCCCCCcCcCcc
Confidence 34677899999987654455666664
No 129
>2bgo_A Endo-B1,4-mannanase 5C; carbohydrate binding protein, carbohydrate binding module; NMR {Cellvibrio japonicus} PDB: 2bgp_A
Probab=65.21 E-value=23 Score=36.46 Aligned_cols=91 Identities=12% Similarity=0.057 Sum_probs=50.3
Q ss_pred ecCCCceEEEeeccCCCccEEEEEEeecCCCCCccceEEEecCeeeeeccccccCCCCCCcceeEecCCCceeeeecc-c
Q psy12394 1044 LDHKDAMVDIAGTVNNPGAYVFVVHFYQPDFPEFDMDVLIQNGQFYEAQLPVKHCPARSGCRAVVQQTNGNRMFTLEK-N 1122 (1873)
Q Consensus 1044 l~~~~~~~~~~~~v~~~g~Yv~vi~y~~~~~~~~~~~v~~~~~~~~~g~~~~~~c~~~~~Cr~vv~~~~~~~~~~l~~-~ 1122 (1873)
++..+..+.|..+||..|.|.|.|.|.++..... -.+.|.+ ...+..++...-+ ... ...+.|++ .
T Consensus 31 Fen~gdsVtf~VdVP~tG~YdLsI~Ya~~~G~k~-n~L~VNG-~~~~V~fP~tt~~-----~~~------~~~V~L~aG~ 97 (140)
T 2bgo_A 31 LQGAGSAVIWNVDVPVTGEYRINLTWSSPYSSKV-NTLVMDG-TALSYAFAEATVP-----VTY------VQTKTLSAGN 97 (140)
T ss_dssp CCSTTCEEEEEECCCSSEEEEEEEEECCCSSEEE-EEEEETT-EEEEEEEESCCSC-----EEE------EEEEEECSSC
T ss_pred ccCCCCEEEEEEecCCCcEEEEEEEeccCCCCce-EEEEECC-ceeEEEECCcCCc-----EEE------EEEEEecCCc
Confidence 3455677888889999999999999966533211 1233333 3333333311000 000 11255555 3
Q ss_pred eEEEEeCC--CCceeEEEEEEEeeCcc
Q psy12394 1123 IVATFKEP--NHKSVWLDYILLIPANE 1147 (1873)
Q Consensus 1123 ~~~~l~~~--~~~~~~ld~v~lip~~~ 1147 (1873)
-+|.|... +--.++||+|.|.|...
T Consensus 98 NtI~i~~~~g~WG~~~iD~I~l~~a~~ 124 (140)
T 2bgo_A 98 HSFGVRVGSSDWGYMNVHSLKLELLGG 124 (140)
T ss_dssp EEEEEECCSSSCCCCEEEEEEEEECC-
T ss_pred cEEEEEecCCCceeEEEEEEEEEcCCC
Confidence 45555442 12366799999999853
No 130
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Probab=64.40 E-value=2.1 Score=45.05 Aligned_cols=36 Identities=22% Similarity=0.649 Sum_probs=29.5
Q ss_pred CCCCCCCCCCCcEeeeeccCCCCCeeeCCCCcccCCCCc
Q psy12394 397 PNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDT 435 (1873)
Q Consensus 397 ~~C~~~~C~n~gtc~~~cd~~~g~~C~C~~g~~G~~Ce~ 435 (1873)
+.|.+.||.++|+|. +....|.|.|.+||+|.+||+
T Consensus 120 ~~~~~~pc~~~g~C~---~~~~~~~c~C~~g~~g~~Ce~ 155 (157)
T 1g1t_A 120 AACTNTSCSGHGECV---ETINNYTCKCDPGFSGLKCEQ 155 (157)
T ss_dssp CCCCTTGGGGSEEEE---EETTEEEEEECTTEESTTSCE
T ss_pred CCCCCCCCCCCCEee---cCCCCeeEECCCCccCccccc
Confidence 456677899999985 445678999999999999984
No 131
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein, membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A {Homo sapiens}
Probab=63.77 E-value=2.9 Score=44.30 Aligned_cols=35 Identities=29% Similarity=0.721 Sum_probs=28.8
Q ss_pred CCCCCCCCCCcEeeeeccCCCCCeeeCCCCcccCCCCc
Q psy12394 398 NCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDT 435 (1873)
Q Consensus 398 ~C~~~~C~n~gtc~~~cd~~~g~~C~C~~g~~G~~Ce~ 435 (1873)
.|.+.+|.++|+|. +...+|.|.|++||.|..||.
T Consensus 121 ~~~~~~C~~~g~C~---~~~~~~~c~C~~g~~g~~C~~ 155 (164)
T 3cfw_A 121 SCQPWSCSGHGECV---EIINNYTCNCDVGYYGPQCQF 155 (164)
T ss_dssp CCCTTSSCSSEEEE---EETTEEEEEECTTCBSSSSCB
T ss_pred CCCCCcCCCCCeec---ccCCCceeeeCCCcccccccc
Confidence 45667899999985 446678999999999999983
No 132
>2uwi_A CRME protein; receptor, poxvirus TNF receptor, receptor immunomodulator, TNF alpha receptor; 2.0A {Vaccinia virus}
Probab=62.46 E-value=1.5 Score=45.95 Aligned_cols=43 Identities=26% Similarity=0.617 Sum_probs=24.5
Q ss_pred CCCCCCCCccCCCCCcCCCCCCCccccCCCceEEecCCccCCCCCcCCCCCcCCCC--CCCCcccc
Q psy12394 1230 RCEMCATGYYGFPDCHPCNCPFTAVCDSYTGECICAARVIGKKCDQCEPNTFGYDP--IIGCEECN 1293 (1873)
Q Consensus 1230 ~C~~C~~g~~~~~~C~~C~C~~~~~C~~~tg~C~C~~~~~G~~C~~C~~g~~g~~~--~~~C~~C~ 1293 (1873)
-|.+|++|++-...|.. .....|..|.+|+|.... ...|.+|.
T Consensus 16 cC~~CppG~~~~~~C~~---------------------~~~t~C~pC~~gty~~~~n~~~~C~~C~ 60 (142)
T 2uwi_A 16 CCKLCKPGTYSDHRCDK---------------------YSDTICGHCPSDTFTSIYNRSPWCHSCR 60 (142)
T ss_dssp EEECBCTTEEEEECCCS---------------------SCCCEEEECCTTEECCSSBCCSSCEECC
T ss_pred CCCCCCCCCeeCccCCC---------------------CCCCccCcCCCCCCcccCCCCCccCCCc
Confidence 46778888775443321 123456677788776432 23577765
No 133
>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=60.98 E-value=3.8 Score=34.84 Aligned_cols=28 Identities=32% Similarity=0.797 Sum_probs=20.9
Q ss_pred CCCCCCceec--CC--CCeeeeCCCccCCCCcc
Q psy12394 360 AFHYATGNCA--EG--TGKCECRPEYTKPDCNS 388 (1873)
Q Consensus 360 ~~c~n~g~C~--~~--~g~C~C~~G~tG~~Ce~ 388 (1873)
+.|.| |+|. .. ...|.|++||+|.+||.
T Consensus 18 ~yC~n-G~C~~i~~~~~~~C~C~~gy~G~RCe~ 49 (50)
T 2rnl_A 18 NFCIH-GECKYIEHLEAVTCKCQQEYFGERCGE 49 (50)
T ss_dssp GTCSS-SEEEEETTTTEEEEECCSSCCSSSCCC
T ss_pred CcCCC-CEEEEecCCCCeeEECCCCcccccccc
Confidence 45666 4896 22 24899999999999984
No 134
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A 3u3s_A 3u3t_A 3u3v_A 3qo4_A
Probab=59.95 E-value=9.5 Score=44.70 Aligned_cols=27 Identities=26% Similarity=0.679 Sum_probs=18.9
Q ss_pred CCccEEcCCCCCcCCC-CCCCcccC-CCC
Q psy12394 1445 GDSCQYCAPGYYGNAV-SLKNCVKC-NCN 1471 (1873)
Q Consensus 1445 G~~c~~c~pg~yG~~~-~~~~c~~c-~c~ 1471 (1873)
...|..|.+|+|=+.. ....|+++ .|.
T Consensus 124 DTvC~~Cp~GTFSd~~Ss~~~C~pcT~C~ 152 (313)
T 3u3p_A 124 DVRCKQCARGTFSDVPSSVMKCKAYTDCL 152 (313)
T ss_dssp CCEEEECCTTEECCSCBSSCCCEECCCSG
T ss_pred CCccccCCCCeecCCCCCCcccccCCccC
Confidence 3467889999997754 34567777 564
No 135
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A*
Probab=57.94 E-value=4.8 Score=46.83 Aligned_cols=57 Identities=21% Similarity=0.635 Sum_probs=30.1
Q ss_pred CceecCCCcccCCccccCCCCcCCCCCCCCCCCcCcCCCCCcccCCcccCCCCCceecCCCCc
Q psy12394 757 ELCECKPKVQGRICDECRPLYWNLKASNPDGCEDCDCYTLGTIGGIKNCNPKSGQCVCKATAM 819 (1873)
Q Consensus 757 g~C~C~~g~~G~~C~~C~~g~~g~~~~~~~~C~~c~C~~~Gt~~~~~~C~~~tg~C~C~~g~~ 819 (1873)
|.|.|.+||+|..|+ |...-.... .....|..-+ ..-.+++.+.| .-|+|.|...+.
T Consensus 207 G~C~C~~g~~G~~Ce-C~~~~~~~~-~~~~~C~~~~--~~~~CSgrG~C--~CG~C~C~~~~~ 263 (280)
T 2p26_A 207 GICRCDTGYIGKNCE-CQTQGRSSQ-ELEGSCRKDN--NSIICSGLGDC--VCGQCLCHTSDV 263 (280)
T ss_dssp TEEEECTTEESTTSC-EECTTSCHH-HHHHTTCSST--TSCGGGGSEEE--ETTEEEECCCSS
T ss_pred CceeCCCCCcCCcce-ecCCccccc-cccccCCCCC--CCCccCCCceE--eCCeeECcCCCC
Confidence 689999999999996 332110000 0000232110 11124444556 348999987753
No 136
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}
Probab=57.71 E-value=5.1 Score=49.26 Aligned_cols=37 Identities=22% Similarity=0.604 Sum_probs=31.0
Q ss_pred CCCCCCCCCCCCcEeeeeccCCCCCeeeCCC-CcccCCCCc
Q psy12394 396 YPNCEPCKCHMNGTLDFYCEPASGQQCPCKE-NYAGDHCDT 435 (1873)
Q Consensus 396 ~~~C~~~~C~n~gtc~~~cd~~~g~~C~C~~-g~~G~~Ce~ 435 (1873)
.+.|.+.||.|+|+|. +..++|.|.|+. +|+|..|+.
T Consensus 185 ~~~C~~~pC~n~g~C~---~~~~~~~C~C~~~~~~G~~C~~ 222 (410)
T 3asi_A 185 STTCQEDSCSNQGVCL---QQWDGFSCDCSMTSFSGPLCND 222 (410)
T ss_dssp SSCCCTTSSSTTCEEE---ECSSSEEEECTTTSEESTTSCE
T ss_pred CCCcccccCCCCCEec---CCCCCceEeccCCcccCCCCCC
Confidence 3568888999999985 456789999996 999999984
No 137
>1jma_B Herpesvirus entry mediator; V-type IG molecule and TNFR superfamily, viral protein; HET: NAG; 2.65A {Human herpesvirus 1} SCOP: g.24.1.1 g.24.1.1 PDB: 2aw2_B*
Probab=57.60 E-value=7 Score=41.91 Aligned_cols=46 Identities=24% Similarity=0.681 Sum_probs=27.2
Q ss_pred cCCCcccCCCcccCCCCCCccccCCCccccccCCCCceeeccCccccCCCCcCCCCccccCCCCCCCCccc
Q psy12394 1320 GRTCDHCVEGHWSFPYCVPCECDLRGTTIDICNQGTAECYCKKNVYGAACDVCKEGTFDIQADNVDGCTRC 1390 (1873)
Q Consensus 1320 G~~C~~C~~G~~g~p~C~~C~C~~~gs~~~~Cd~~~G~C~C~~~~~G~~Cd~C~~g~~g~~~~~~~gC~~C 1390 (1873)
|+.|..|.+|+|-...|. . .....|..|.+|+|-........|++|
T Consensus 13 ~~~C~~CppG~~~~~~C~---------------~----------~~~t~C~~Cp~GtY~~~~n~~~~C~~C 58 (167)
T 1jma_B 13 SECCPKCSPGYRVKEACG---------------E----------LTGTVCEPCPPGTYIAHLNGLSKCLQC 58 (167)
T ss_dssp TBCCBCBCTTEEEEECCC---------------S----------SSCCEEEECCTTEECSSCBCSSCCEEC
T ss_pred CcCCCCCCCCCEeccCCC---------------C----------CCCCcCCcCCCCccccccCcCccccCC
Confidence 567888888887633221 1 123466678888886543334556665
No 138
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus musculus} PDB: 3a7q_A*
Probab=57.56 E-value=1.4 Score=56.91 Aligned_cols=46 Identities=26% Similarity=0.531 Sum_probs=35.5
Q ss_pred ecCCCCCCCCCCccCCCCccCCCCCcccCCCCCCcCCccCCCCCcccCCCCccCCCCCC
Q psy12394 574 CLCKEGYTGARCDQCKAGYYGYPDCKLCGCSAVGSSSTACDVSGKCPCLVNFGGKTCSQ 632 (1873)
Q Consensus 574 C~C~~G~~G~~Ce~C~~g~~~~~~C~~c~C~~~Gt~~~~C~~~g~C~C~~G~~G~~Ce~ 632 (1873)
-.|.+||+|.+|.. + ..|. ..|.+|| .|.. |+|.|.+||+|..|++
T Consensus 520 ~~C~~gw~g~dc~i------~-~~Cp-~~C~ghG----~C~~-G~C~Cd~G~~G~~C~~ 565 (725)
T 2e26_A 520 FDKQQTWAIDNVYI------G-DGCL-DMCSGHG----RCVQ-GSCVCDEQWGGLYCDE 565 (725)
T ss_dssp CCTTCCEEEEEEEE------E-SCSS-GGGGGSE----EEET-TEEEECTTEESTTSCE
T ss_pred CccCCCcccccccc------c-CCCC-cccCCCc----EECC-CCEeeCCCccCCCcCc
Confidence 36899999999983 0 1232 2788998 6754 8999999999999985
No 139
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}
Probab=56.40 E-value=43 Score=34.76 Aligned_cols=92 Identities=11% Similarity=0.078 Sum_probs=51.1
Q ss_pred cCCCceEEEeeccCCCccEEEEEEeecCCCCCccceEEEecCeeeeecccc--ccCCCCCCcceeEecCCCceeeeecc-
Q psy12394 1045 DHKDAMVDIAGTVNNPGAYVFVVHFYQPDFPEFDMDVLIQNGQFYEAQLPV--KHCPARSGCRAVVQQTNGNRMFTLEK- 1121 (1873)
Q Consensus 1045 ~~~~~~~~~~~~v~~~g~Yv~vi~y~~~~~~~~~~~v~~~~~~~~~g~~~~--~~c~~~~~Cr~vv~~~~~~~~~~l~~- 1121 (1873)
...+..++|...++..|.|.|.|+|.+.....-.+.+.|.+.......++. .|=. . .. ....+.|.+
T Consensus 35 ~~~G~~v~~~V~v~~aG~Y~l~~ryang~~~~r~~~l~VNG~~~~~v~~p~Tg~W~~--w--~t------~~~~v~L~aG 104 (145)
T 2w3j_A 35 NAVGASIVWSLSAASAKTYTAQIRFGNGGTSARRATVVVNDSQIKTLDFPTNSNWTQ--W--QT------VNVDIPLKAG 104 (145)
T ss_dssp SSTTCEEEEEEEESSCEEEEEEEEEECCSSSCCCEEEEETTEEEEEECCCCCSCTTS--C--EE------EEEEEEECSE
T ss_pred CCCCCEEEEEEECCCCeEEEEEEEEECCCCCCeEEEEEECCeEeeEEEecCCCCCCe--e--EE------EEEEEEECCC
Confidence 345677888888999999999999986543344556666543222222211 0100 0 00 012455555
Q ss_pred ceEEEEeCCC-CceeEEEEEEEeeCc
Q psy12394 1122 NIVATFKEPN-HKSVWLDYILLIPAN 1146 (1873)
Q Consensus 1122 ~~~~~l~~~~-~~~~~ld~v~lip~~ 1146 (1873)
.-+|+|.... .-.+-||+|.+.|..
T Consensus 105 ~ntI~l~~~~~~g~~niD~i~v~~~~ 130 (145)
T 2w3j_A 105 TNSIKLVAETADGLANIDSIRVTGNG 130 (145)
T ss_dssp EEEEEEEECSTTCCCEEEEEEECSTT
T ss_pred ceEEEEEEecCcCCEEEEEEEEEcCC
Confidence 3345554421 134678998888764
No 140
>4d8m_A Pesticidal crystal protein CRY5BA; glycolipid binding, lipid binding protein; 2.30A {Bacillus thuringiensis}
Probab=54.55 E-value=39 Score=42.84 Aligned_cols=102 Identities=14% Similarity=0.171 Sum_probs=58.0
Q ss_pred CCceEEecCCCceEEEeeccCCCccEEEEEEeecCCCCCccceEEEec-CeeeeeccccccCCCCCCcceeEecCCCc--
Q psy12394 1038 KTGLVYLDHKDAMVDIAGTVNNPGAYVFVVHFYQPDFPEFDMDVLIQN-GQFYEAQLPVKHCPARSGCRAVVQQTNGN-- 1114 (1873)
Q Consensus 1038 ~~~~v~l~~~~~~~~~~~~v~~~g~Yv~vi~y~~~~~~~~~~~v~~~~-~~~~~g~~~~~~c~~~~~Cr~vv~~~~~~-- 1114 (1873)
++..|.|+. ++.+.+....+..++|.|.++|+......+.+ .+.. +....+..++..-... ..-|....+.
T Consensus 476 ga~av~l~~-~q~l~~~i~n~~~~~Y~VR~RYAS~~d~~~~~--~~~~~~~~i~n~~~fp~T~~~---~~~v~G~nG~y~ 549 (587)
T 4d8m_A 476 GNNAVKLSN-SQSVGIQITNQTKQKYEIRCRYASKGDNNVYF--NVDLSENPFRNSISFGSTESS---VVGVQGENGKYI 549 (587)
T ss_dssp TEEEEEECT-TCEEEEEEEECSCEEEEEEEEEEESSCEEEEE--EECCSSSCEEEEEEECCCTTC---SSSEECSSSEEE
T ss_pred ccceeeCCC-CCEEEEEEEccccceEEEEEEEecCCCceEEE--EEcCCCceeeccCCCCccccc---cccccccCCceE
Confidence 455677766 66788888889999999999999866544222 3332 2222122221110000 0111111221
Q ss_pred ----eeeeecc-ceEEEEeCCCCceeEEEEEEEeeC
Q psy12394 1115 ----RMFTLEK-NIVATFKEPNHKSVWLDYILLIPA 1145 (1873)
Q Consensus 1115 ----~~~~l~~-~~~~~l~~~~~~~~~ld~v~lip~ 1145 (1873)
..|.++. .+++.++......++||+|-+||+
T Consensus 550 ~~~~~~~~~p~g~~t~~i~nn~~~~~~iDRIEFiPk 585 (587)
T 4d8m_A 550 LKSITTVEIPAGSFYVHITNQGSSDLFLDRIEFVPK 585 (587)
T ss_dssp EEEEEEEEECSEEEEEEEEECSSSCEEEEEEEEEEC
T ss_pred eecCCceEecCCcEEEEEEecCCCCEEEEEEEeeec
Confidence 2344444 456666665567899999999996
No 141
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A
Probab=53.97 E-value=57 Score=33.58 Aligned_cols=41 Identities=15% Similarity=0.191 Sum_probs=31.0
Q ss_pred CCCceEEEeeccCCCccEEEEEEeecCCCCCccceEEEecC
Q psy12394 1046 HKDAMVDIAGTVNNPGAYVFVVHFYQPDFPEFDMDVLIQNG 1086 (1873)
Q Consensus 1046 ~~~~~~~~~~~v~~~g~Yv~vi~y~~~~~~~~~~~v~~~~~ 1086 (1873)
..+..++|...++..|.|.|.|+|.+.....-.+.|.|.+.
T Consensus 36 ~~g~~v~~~V~v~~aG~Y~l~~ryang~~~~r~~~l~VNG~ 76 (139)
T 2w87_A 36 AQGAAVVWAIDATSSGRRTLTIRYANGGTANRNGSLVINGG 76 (139)
T ss_dssp STTCEEEEEEEESSCEEEEEEEEEECCSSSCCCEEEEETTT
T ss_pred CCCCEEEEEEECCCCcEEEEEEEEECCCCCCceEEEEECCE
Confidence 34677888888999999999999987654444566666653
No 142
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A*
Probab=53.77 E-value=6.4 Score=45.79 Aligned_cols=16 Identities=38% Similarity=1.084 Sum_probs=14.3
Q ss_pred CCceeeCCCcccCCCC
Q psy12394 706 DGKCQCEKNFGGDRCE 721 (1873)
Q Consensus 706 ~g~C~C~~g~~G~~Ce 721 (1873)
-|.|.|.+||+|..|+
T Consensus 206 CG~C~C~~g~~G~~Ce 221 (280)
T 2p26_A 206 CGICRCDTGYIGKNCE 221 (280)
T ss_dssp TTEEEECTTEESTTSC
T ss_pred CCceeCCCCCcCCcce
Confidence 3789999999999997
No 143
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus musculus} PDB: 3a7q_A*
Probab=52.78 E-value=2.6 Score=54.55 Aligned_cols=42 Identities=24% Similarity=0.504 Sum_probs=33.4
Q ss_pred eeCCCcccCCCCc---CCCCCccCCCCcCCCCCCCCCccCccccccCCCCCceecCCCcccCCccc
Q psy12394 710 QCEKNFGGDRCER---CKEGLYNFPICEECNCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDE 772 (1873)
Q Consensus 710 ~C~~g~~G~~Ce~---C~~g~~g~p~C~~C~C~~~Gs~~~~~~C~~~~~~g~C~C~~g~~G~~C~~ 772 (1873)
.|.+||+|.+|.+ |+. .|...|.|.. |+|.|.+||+|..|++
T Consensus 521 ~C~~gw~g~dc~i~~~Cp~-----------~C~ghG~C~~----------G~C~Cd~G~~G~~C~~ 565 (725)
T 2e26_A 521 DKQQTWAIDNVYIGDGCLD-----------MCSGHGRCVQ----------GSCVCDEQWGGLYCDE 565 (725)
T ss_dssp CTTCCEEEEEEEEESCSSG-----------GGGGSEEEET----------TEEEECTTEESTTSCE
T ss_pred ccCCCcccccccccCCCCc-----------ccCCCcEECC----------CCEeeCCCccCCCcCc
Confidence 6899999999973 432 5777777643 7899999999999975
No 144
>1sg1_X Tumor necrosis factor receptor superfamily member 16; nerve growth factor, NGF, neurotrophin, common neurotrophin receptor; 2.40A {Rattus norvegicus} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 g.24.1.1 PDB: 3buk_C* 3ij2_X
Probab=49.48 E-value=25 Score=37.20 Aligned_cols=60 Identities=28% Similarity=0.650 Sum_probs=32.2
Q ss_pred EcCCCCCcCCCCCCCcccC-CCCCCcccCccccCCCCCCCcccccCCCcccccccccCCCCcCCCCCCCCCCccCC
Q psy12394 1450 YCAPGYYGNAVSLKNCVKC-NCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDECRPLYWNLKASNPDGCEDCD 1524 (1873)
Q Consensus 1450 ~c~pg~yG~~~~~~~c~~c-~c~~~~~~~~~~~~~~~~~~~~c~C~~~v~G~~Cd~C~~~y~~~~~~~~~~C~~C~ 1524 (1873)
.|++|||-+. ....|++| .|.+. .... . .|- ......|..|.+|+|.........|++|.
T Consensus 80 ~C~~G~y~~~-~~~~C~~C~~C~~G-~~v~-~-----------~ct-~~~dt~C~~C~~Gtfs~~~~~~~~C~~ct 140 (161)
T 1sg1_X 80 RCAYGYYQDE-ETGHCEACSVCEVG-SGLV-F-----------SCQ-DKQNTVCEECPEGTYSDEANHVDPCLPCT 140 (161)
T ss_dssp EECTTEEECT-TTCCEEECCCBCTT-EEEE-E-----------CCB-TTBCCEEEECCTTEECCSCBSSCCCEECC
T ss_pred ccCCCeEeCC-CCccccCCccCCCC-Ceec-c-----------cCC-CCCCCcccCCCCCceeCCCCCCCcCCcCC
Confidence 4999999653 23456666 45431 1000 0 000 11234577889998886543345676664
No 145
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum}
Probab=48.84 E-value=52 Score=34.70 Aligned_cols=89 Identities=13% Similarity=0.099 Sum_probs=48.4
Q ss_pred CceEEEe-eccCCCccEEEEEEeecCCC----------CCccceEEEecCeeeeecccc--ccCCCCCCcceeEecCCCc
Q psy12394 1048 DAMVDIA-GTVNNPGAYVFVVHFYQPDF----------PEFDMDVLIQNGQFYEAQLPV--KHCPARSGCRAVVQQTNGN 1114 (1873)
Q Consensus 1048 ~~~~~~~-~~v~~~g~Yv~vi~y~~~~~----------~~~~~~v~~~~~~~~~g~~~~--~~c~~~~~Cr~vv~~~~~~ 1114 (1873)
+..|.|. ..++..|.|.|.|+|.+.+. ..-.+.|.|+++...+..++. .|=. . ....
T Consensus 46 ~~~vtf~~V~~~~aG~Y~l~irYang~~~~~~~y~~~~~~r~~~v~VNG~~~~~v~fp~Tg~W~~-------~---~~~t 115 (156)
T 2wz8_A 46 NNYLQFNNVYVPQAGTYRMVVQFANAEVFGQHSYNNNVVDRYCSISVNGGPEKGHYFFNTRGWNT-------Y---RTDI 115 (156)
T ss_dssp TSCEEEEEEEESSCEEEEEEEEEECCCBC-------CBCCEEEEEEETTCCCEEEEECCCSSTTC-------C---EEEE
T ss_pred CCEEEEEEEecCCCcEEEEEEEEECCCcccccccCCccCcceEEEEECCceeeEEEeCCCCCCCc-------c---eEEE
Confidence 3567777 77899999999999988652 134456666654322222221 0100 0 0002
Q ss_pred eeeeecc-ceEEEEeCC--CCceeEEEEEEEeeCc
Q psy12394 1115 RMFTLEK-NIVATFKEP--NHKSVWLDYILLIPAN 1146 (1873)
Q Consensus 1115 ~~~~l~~-~~~~~l~~~--~~~~~~ld~v~lip~~ 1146 (1873)
..+.|.+ .=+|+|... ..-..-||+|.|.|.+
T Consensus 116 v~V~L~aG~NtI~~~~~~~~~~~pdiD~i~v~~~~ 150 (156)
T 2wz8_A 116 IDVYLNAGNNTIRFYNGTSGSYAPNIDKIAIAALE 150 (156)
T ss_dssp EEEEECSEEEEEEEECCSTTCBCCEEEEEEEEC--
T ss_pred EEEEECCCceEEEEEecCCCCCCcEEEEEEEeccc
Confidence 3455555 335566554 2223468998888764
No 146
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Probab=48.37 E-value=5.8 Score=41.55 Aligned_cols=31 Identities=23% Similarity=0.614 Sum_probs=24.9
Q ss_pred CCCCCCCCceecCCC--CeeeeCCCccCCCCcc
Q psy12394 358 QCAFHYATGNCAEGT--GKCECRPEYTKPDCNS 388 (1873)
Q Consensus 358 ~c~~c~n~g~C~~~~--g~C~C~~G~tG~~Ce~ 388 (1873)
...||.++++|.+.. +.|.|.+||+|.+||.
T Consensus 123 ~~~pc~~~g~C~~~~~~~~c~C~~g~~g~~Ce~ 155 (157)
T 1g1t_A 123 TNTSCSGHGECVETINNYTCKCDPGFSGLKCEQ 155 (157)
T ss_dssp CTTGGGGSEEEEEETTEEEEEECTTEESTTSCE
T ss_pred CCCCCCCCCEeecCCCCeeEECCCCccCccccc
Confidence 346777889997543 5899999999999984
No 147
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein, membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A {Homo sapiens}
Probab=47.98 E-value=9 Score=40.46 Aligned_cols=29 Identities=28% Similarity=0.621 Sum_probs=24.0
Q ss_pred CCCCCCceecC--CCCeeeeCCCccCCCCcc
Q psy12394 360 AFHYATGNCAE--GTGKCECRPEYTKPDCNS 388 (1873)
Q Consensus 360 ~~c~n~g~C~~--~~g~C~C~~G~tG~~Ce~ 388 (1873)
.+|.+.|+|.. ..++|.|.+||+|..||.
T Consensus 125 ~~C~~~g~C~~~~~~~~c~C~~g~~g~~C~~ 155 (164)
T 3cfw_A 125 WSCSGHGECVEIINNYTCNCDVGYYGPQCQF 155 (164)
T ss_dssp TSSCSSEEEEEETTEEEEEECTTCBSSSSCB
T ss_pred CcCCCCCeecccCCCceeeeCCCcccccccc
Confidence 56777899974 446999999999999994
No 148
>1ext_A Tumor necrosis factor receptor; binding protein, cytokine, signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R
Probab=47.11 E-value=11 Score=40.16 Aligned_cols=63 Identities=21% Similarity=0.516 Sum_probs=33.0
Q ss_pred CccccCCCCCcCCCCCCCccccccccCCCCcCCCccccCccccCCCccccCCccccccCCCCCcCCCCCCCCC----CCC
Q psy12394 1656 DQCEQCQPGYHGNATQGTMADCLICACPLPITSNNFASGCDVSEDGCHMNGTLNFYCEPTSGQQCPCKENYAG----DHC 1731 (1873)
Q Consensus 1656 ~~Ce~C~~gy~g~a~~g~~~~c~~c~c~~~~~~n~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~C~C~~gy~G----~sC 1731 (1873)
..|+.|.+|+|-+.... ...|++|.- |.... +.. ....|.+++.-+|.|++||.- .++
T Consensus 40 t~C~~C~~gty~~~~n~-~~~C~~C~~------------C~~~~-~~~----~~~~Ct~t~dt~C~C~~G~y~~~~~~~~ 101 (162)
T 1ext_A 40 TDCRECESGSFTASENH-LRHCLSCSK------------CRKEM-GQV----EISSCTVDRDTVCGCRKNQYRHYWSENL 101 (162)
T ss_dssp CEEEECCTTEECCSSBC-CSSCEECCC------------CCGGG-TCE----EEECCBTTBCCEEECCTTEEEEEEETTE
T ss_pred cccccCCCCccccccCC-CCcccccCC------------CCCCC-CEE----EEecccCCCCCCccCCCCceeccCCCCc
Confidence 45778888877666542 244665531 11000 000 001233334568999999973 456
Q ss_pred ccccc
Q psy12394 1732 DTCAQ 1736 (1873)
Q Consensus 1732 e~Ca~ 1736 (1873)
+.|.+
T Consensus 102 ~~C~~ 106 (162)
T 1ext_A 102 FQCFN 106 (162)
T ss_dssp EEEEE
T ss_pred ccccC
Confidence 66655
No 149
>3k51_B Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity, cytokine, D bond, glycoprotein, membrane, secreted, signal-anchor, transmembrane, apoptosis; 2.45A {Homo sapiens} PDB: 3mi8_D 3mhd_D
Probab=46.00 E-value=18 Score=38.99 Aligned_cols=25 Identities=20% Similarity=0.565 Sum_probs=18.1
Q ss_pred ccccccCCCCcCCCCCCCCCCccCC
Q psy12394 1500 RICDECRPLYWNLKASNPDGCEDCD 1524 (1873)
Q Consensus 1500 ~~Cd~C~~~y~~~~~~~~~~C~~C~ 1524 (1873)
..|..|.+|+|....+..+.|+++.
T Consensus 121 t~C~~C~~GtFs~~~s~~~~C~p~t 145 (176)
T 3k51_B 121 TQCQPCPPGTFSASSSSSEQCQPHR 145 (176)
T ss_dssp CEEEECCTTEECCSCSSSCCCEECC
T ss_pred CccccCCCCcccCCCCCCCcccCCC
Confidence 4677899999987655556777764
No 150
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A
Probab=44.19 E-value=71 Score=32.91 Aligned_cols=96 Identities=7% Similarity=0.156 Sum_probs=52.3
Q ss_pred CCceeeeeeeecCCCeeEEEEeecCCCCCCCCceEEEeecccccccccceEeecCCCCCCcceeeecCCCceEEEEeccC
Q psy12394 875 QPKLRFDMRITKPGPHVLVLSYVTPGPHTQDSAVIQLEASSQTTVERGNVRLHDCPYTTPCRATVLDKQGKVSVFEFDTN 954 (1873)
Q Consensus 875 q~~~~~~~~~~~~g~y~~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 954 (1873)
...+.+.+.++++|.|.|.++|.+..... ..+.|.+... ...+.+.|... ..-..... ....+.|+++
T Consensus 39 g~~v~~~V~v~~aG~Y~l~~ryan~~~~~---~~~~l~VNG~--~~~~~v~~p~T----g~w~~w~~---~~~~v~L~aG 106 (144)
T 2w47_A 39 GGYIEWNVNAPSSGSYALIFRYANGTTAN---RPMRITVNGN--IVKPSMDFVST----GAWTTWNE---AGIVANLNQG 106 (144)
T ss_dssp TCEEEEEEEESSSEEEEEEEEEECCSSSC---CCEEEEETTE--EEEEEECCCCC----SSTTCCEE---EEEEEEECSE
T ss_pred CCEEEEEEECCCCcEEEEEEEEECCCCCC---eEEEEEECCe--EeeeEEEecCC----CCCCeeEE---EEEEEEECCC
Confidence 34577889999999999999999864322 2344444322 11122222110 00001110 1234677777
Q ss_pred ceEEEEeccCCCCCCccceEEEEEeeccCcc
Q psy12394 955 YISVELTADENPTNNASAAIQKIVAIPEAKW 985 (1873)
Q Consensus 955 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~~ 985 (1873)
.-.|+|..... ...+.||+|.+.|..+.
T Consensus 107 ~ntI~l~~~~~---~g~~niD~i~v~~~~~~ 134 (144)
T 2w47_A 107 NNVIRATAIAS---DGGPNVDYLKVFSANAF 134 (144)
T ss_dssp EEEEEEEECST---TCCCEEEEEEEEECTTS
T ss_pred ccEEEEEEeCC---CCCEEEeEEEEEeCCCC
Confidence 77777764211 12377899988886443
No 151
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*
Probab=42.43 E-value=1.1e+02 Score=30.62 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=30.2
Q ss_pred CCCceEEEeeccCCCccEEEEEEeecCCCCCccceEEEec
Q psy12394 1046 HKDAMVDIAGTVNNPGAYVFVVHFYQPDFPEFDMDVLIQN 1085 (1873)
Q Consensus 1046 ~~~~~~~~~~~v~~~g~Yv~vi~y~~~~~~~~~~~v~~~~ 1085 (1873)
..+..+++...++..|.|.|.++|.++....-.+.+.|.+
T Consensus 36 ~~g~~v~~~V~v~~aG~Y~l~~rya~~~~~~~~~~l~VnG 75 (127)
T 2vzp_A 36 VAGSSVEWTVTVPSAGTYDVVVRYANGTTTSRPLDFSVNG 75 (127)
T ss_dssp STTCEEEEEEEESSSEEEEEEEEEECCSSSCCCEEEEETT
T ss_pred CCCCEEEEEEEcCCCCEEEEEEEEEcCCCCCeEEEEEECC
Confidence 3567788888899999999999999865434455565554
No 152
>3alq_R Tumor necrosis factor receptor superfamily member; ligand-receptor complex, cytokine, cytokine-cytokine recepto; 3.00A {Homo sapiens}
Probab=41.83 E-value=14 Score=39.62 Aligned_cols=24 Identities=25% Similarity=0.560 Sum_probs=15.9
Q ss_pred ccccccCCCCcCCCCCCCCCCccC
Q psy12394 1500 RICDECRPLYWNLKASNPDGCEDC 1523 (1873)
Q Consensus 1500 ~~Cd~C~~~y~~~~~~~~~~C~~C 1523 (1873)
..|..|.+|+|....+..+.|+++
T Consensus 127 t~C~~C~~Gtfs~~~s~~~~C~p~ 150 (173)
T 3alq_R 127 VVCKPCAPGTFSNTTSSTDICRPH 150 (173)
T ss_dssp CEEEECCTTEECCCCBSSCCCEEC
T ss_pred CcccCCCCCeecCCCCCCccCCCC
Confidence 457778889888754444556555
No 153
>1skz_A Antistasin; factor XA inhibitor, serine protease inhibitor, thrombosis; 1.90A {Haementeria officinalis} SCOP: g.3.15.1 g.3.15.1
Probab=41.28 E-value=11 Score=37.84 Aligned_cols=92 Identities=27% Similarity=0.713 Sum_probs=55.9
Q ss_pred CCcCCCCCCCccccCCCceEEecCCccCCCCC-cCCCCCcCCCCCCCCccccCCCCCCC---------CCCcccCCCcee
Q psy12394 1243 DCHPCNCPFTAVCDSYTGECICAARVIGKKCD-QCEPNTFGYDPIIGCEECNCHPHGVN---------GTQQCDLFDGSC 1312 (1873)
Q Consensus 1243 ~C~~C~C~~~~~C~~~tg~C~C~~~~~G~~C~-~C~~g~~g~~~~~~C~~C~C~~~gs~---------~~~~C~~~~G~C 1312 (1873)
+|.-+.|+.++.|+.+++.|.|+. ..|. .|..||.. | ..||+-|.|...... ..+.|+.....|
T Consensus 7 ~ce~~~c~~~~~c~~~~~~C~c~~----~~C~l~C~~Gf~~-D-~~GC~~C~C~~~p~k~~~~~~~Cp~g~~c~~~~~~C 80 (119)
T 1skz_A 7 GCEEAGCPEGSACNIITDRCTCSG----VRCRVHCPHGFQR-S-RYGCEFCKCRLEPMKATCDISECPEGMMCSRLTNKC 80 (119)
T ss_dssp CHHHHCCCTTCBCCTTTCSSCBCC----CSSCCCCTTCEEE-C-TTSCEEEEECSSCCCSCCCGGGSCTTEECCTTTSSS
T ss_pred CcCcccCCccchhhhhhccccccc----CccCCcCCCcceE-C-CCCCCCCCCcCCCCcCCcccccCCcccccccccccc
Confidence 466677888889999999997653 4565 37777665 3 369999999875321 012344344455
Q ss_pred eccCCcccCCCc-ccCCCcccCC-CCCCccccC
Q psy12394 1313 SCKENIVGRTCD-HCVEGHWSFP-YCVPCECDL 1343 (1873)
Q Consensus 1313 ~C~~~~~G~~C~-~C~~G~~g~p-~C~~C~C~~ 1343 (1873)
.|+. -..|. .|..||--+- .|..|.|..
T Consensus 81 ~C~~---~~~C~k~Cp~G~~~De~GC~~C~C~~ 110 (119)
T 1skz_A 81 DCKI---DINCRKTCPNGLKRDKLGCEYCECRP 110 (119)
T ss_dssp CEES---CCCCCCCCSSCEEECTTSCEEEEECC
T ss_pred ccCC---cCcccccCCCcceECCCCCCCCCCCC
Confidence 5553 23454 2666665443 365566654
No 154
>2hey_R Tumor necrosis factor receptor superfamily member; cytokine, receptor-ligan complex, CO-stimulator, TNFSF; 2.00A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 2hev_R
Probab=39.99 E-value=15 Score=38.41 Aligned_cols=64 Identities=28% Similarity=0.786 Sum_probs=38.2
Q ss_pred CCCCCCCCCccCCC----CCcCCC-CCCC------ccccCC-CceEEecCCcc-------CCCCCcCCCCCcCCCCCCCC
Q psy12394 1229 RRCEMCATGYYGFP----DCHPCN-CPFT------AVCDSY-TGECICAARVI-------GKKCDQCEPNTFGYDPIIGC 1289 (1873)
Q Consensus 1229 ~~C~~C~~g~~~~~----~C~~C~-C~~~------~~C~~~-tg~C~C~~~~~-------G~~C~~C~~g~~g~~~~~~C 1289 (1873)
..|..|++|+|... .|.+|. |... ..|... .-+|.|++|+. +..|..|.+|+|.......|
T Consensus 38 t~C~~C~~gty~~~~~~~~C~~C~~C~~~~g~~~~~~Ct~t~dt~C~C~~G~y~~~g~~~~~~C~~C~~Gtfs~~~~~~C 117 (146)
T 2hey_R 38 TVCRPCGPGFYNDVVSSKPCKPCTWCNLRSGSERKQLCTATQDTVCRCRAGTQPLDSYKPGVDCAPCPPGHFSPGDNQAC 117 (146)
T ss_dssp CEEEECCTTEECCSCBSSCCEECCCCCGGGTEEEEECCBTTBCCEEEECTTEEESCSSSTTSSEEECCTTEECCSTTCCC
T ss_pred CCcccCCCCCEECCCCCCcCcccCCCCCCCCceEeccCccCCCccccCCCCeeeCCCcccCcccccCCCCcccCCCCCCC
Confidence 45667778776433 366553 5432 124332 23688988863 34688899999885433456
Q ss_pred ccc
Q psy12394 1290 EEC 1292 (1873)
Q Consensus 1290 ~~C 1292 (1873)
++|
T Consensus 118 ~~~ 120 (146)
T 2hey_R 118 KPW 120 (146)
T ss_dssp EEC
T ss_pred cCC
Confidence 665
No 155
>1skz_A Antistasin; factor XA inhibitor, serine protease inhibitor, thrombosis; 1.90A {Haementeria officinalis} SCOP: g.3.15.1 g.3.15.1
Probab=37.74 E-value=22 Score=35.65 Aligned_cols=92 Identities=32% Similarity=0.775 Sum_probs=60.2
Q ss_pred CCCccccCCCCCCCCCCcccCCCceeeccCCcccCCCc-ccCCCcccCC-CCCCccccCCCc----------cccccCCC
Q psy12394 1287 IGCEECNCHPHGVNGTQQCDLFDGSCSCKENIVGRTCD-HCVEGHWSFP-YCVPCECDLRGT----------TIDICNQG 1354 (1873)
Q Consensus 1287 ~~C~~C~C~~~gs~~~~~C~~~~G~C~C~~~~~G~~C~-~C~~G~~g~p-~C~~C~C~~~gs----------~~~~Cd~~ 1354 (1873)
.+|..+.|.. | ..|+.++++|.|.. .+|. .|..||--+. .|.-|.|...-. ....|+..
T Consensus 6 ~~ce~~~c~~-~----~~c~~~~~~C~c~~----~~C~l~C~~Gf~~D~~GC~~C~C~~~p~k~~~~~~~Cp~g~~c~~~ 76 (119)
T 1skz_A 6 PGCEEAGCPE-G----SACNIITDRCTCSG----VRCRVHCPHGFQRSRYGCEFCKCRLEPMKATCDISECPEGMMCSRL 76 (119)
T ss_dssp -CHHHHCCCT-T----CBCCTTTCSSCBCC----CSSCCCCTTCEEECTTSCEEEEECSSCCCSCCCGGGSCTTEECCTT
T ss_pred CCcCcccCCc-c----chhhhhhccccccc----CccCCcCCCcceECCCCCCCCCCcCCCCcCCcccccCCcccccccc
Confidence 3577777765 2 47888889887764 5676 4888887766 488888876411 11234444
Q ss_pred CceeeccCccccCCCC-cCCCCccccCCCCCCCCccccccC
Q psy12394 1355 TAECYCKKNVYGAACD-VCKEGTFDIQADNVDGCTRCFCFG 1394 (1873)
Q Consensus 1355 ~G~C~C~~~~~G~~Cd-~C~~g~~g~~~~~~~gC~~C~C~g 1394 (1873)
...|.|+. -..|+ .|.-||-- |..||..|.|..
T Consensus 77 ~~~C~C~~---~~~C~k~Cp~G~~~----De~GC~~C~C~~ 110 (119)
T 1skz_A 77 TNKCDCKI---DINCRKTCPNGLKR----DKLGCEYCECRP 110 (119)
T ss_dssp TSSSCEES---CCCCCCCCSSCEEE----CTTSCEEEEECC
T ss_pred ccccccCC---cCcccccCCCcceE----CCCCCCCCCCCC
Confidence 55666764 34576 58777653 567999998864
No 156
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Probab=36.90 E-value=14 Score=52.09 Aligned_cols=36 Identities=22% Similarity=0.656 Sum_probs=30.7
Q ss_pred CCCCCCCCCCCcEeeeeccCCCCCeeeCC-CCcccCCCCc
Q psy12394 397 PNCEPCKCHMNGTLDFYCEPASGQQCPCK-ENYAGDHCDT 435 (1873)
Q Consensus 397 ~~C~~~~C~n~gtc~~~cd~~~g~~C~C~-~g~~G~~Ce~ 435 (1873)
+.|.+.||.|+|+|. +..++|.|.|+ ++|+|..|+.
T Consensus 1018 ~~C~~~pC~ngG~C~---~~~~~~~C~C~~~g~~G~~C~~ 1054 (1245)
T 3qcw_A 1018 TTCQEDSCSNQGVCL---QQWDGFSCDCSMTSFSGPLCND 1054 (1245)
T ss_dssp CCCCTTSSSSSCEEE---EETTEEEEECTTSSCBSTTSCB
T ss_pred CceECCcCCCCCEeC---CCCCCCEEECCCCCCCCCCccC
Confidence 568899999999985 34567899999 6999999985
No 157
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1
Probab=36.69 E-value=16 Score=30.81 Aligned_cols=25 Identities=20% Similarity=0.510 Sum_probs=18.1
Q ss_pred CCCCCCcEeeeeccCCCCCeeeCCCCcccC
Q psy12394 402 CKCHMNGTLDFYCEPASGQQCPCKENYAGD 431 (1873)
Q Consensus 402 ~~C~n~gtc~~~cd~~~g~~C~C~~g~~G~ 431 (1873)
.+|. ++|. +...+|.|.|++||++.
T Consensus 20 ~~C~--~~C~---n~~Gsy~C~C~~Gy~~~ 44 (53)
T 1apq_A 20 PQCQ--HLCH---NYVGGYFCSCRPGYELQ 44 (53)
T ss_dssp CTTS--SEEE---EETTEEEEECSTTCEEC
T ss_pred CCCC--CEeE---CCCCCeEEECCCCCeEC
Confidence 4675 3663 44567999999999864
No 158
>2uwi_A CRME protein; receptor, poxvirus TNF receptor, receptor immunomodulator, TNF alpha receptor; 2.0A {Vaccinia virus}
Probab=36.28 E-value=7.8 Score=40.39 Aligned_cols=64 Identities=25% Similarity=0.513 Sum_probs=38.1
Q ss_pred CCCccccCCCCCcCCCCCCCccccccccCCCCcCCCccccCccccCCCccccCCccccccCCCCCcCCCCCCCC------
Q psy12394 1654 LGDQCEQCQPGYHGNATQGTMADCLICACPLPITSNNFASGCDVSEDGCHMNGTLNFYCEPTSGQQCPCKENYA------ 1727 (1873)
Q Consensus 1654 ~G~~Ce~C~~gy~g~a~~g~~~~c~~c~c~~~~~~n~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~C~C~~gy~------ 1727 (1873)
....|+.|++|+|-+.+.. ...|++|.--.. . .+. . ...|.+++.-+|.|++||.
T Consensus 34 ~~t~C~pC~~gty~~~~n~-~~~C~~C~~C~~--~-~~~---~------------~~~Ct~t~dtvC~C~~G~yc~~~~~ 94 (142)
T 2uwi_A 34 SDTICGHCPSDTFTSIYNR-SPWCHSCRGPCG--T-NRV---E------------VTPCTPTTNRICHCDSNSYCLLKAS 94 (142)
T ss_dssp CCCEEEECCTTEECCSSBC-CSSCEECCCCCC--T-TEE---E------------EECCBTTBCCEEEECTTEEEEEECT
T ss_pred CCCccCcCCCCCCcccCCC-CCccCCCcCccc--C-Cee---E------------eecCCCCCCCEeeCCCCcEecccCC
Confidence 4567899999988777643 345776542111 0 000 0 0124445567899999998
Q ss_pred CCCCccccc
Q psy12394 1728 GDHCDTCAQ 1736 (1873)
Q Consensus 1728 G~sCe~Ca~ 1736 (1873)
...|+.|.+
T Consensus 95 ~~~C~~C~~ 103 (142)
T 2uwi_A 95 DGNCVTCAP 103 (142)
T ss_dssp TSCEEEEEE
T ss_pred CCCCCCCcC
Confidence 455777765
No 159
>3f2z_A Uncharacterized protein BF3579; the present C-terminal domain is predominantly composed of B strands., structural genomics, PSI-2; 1.30A {Bacteroides fragilis} PDB: 2kd7_A
Probab=33.66 E-value=60 Score=33.86 Aligned_cols=64 Identities=14% Similarity=0.153 Sum_probs=37.0
Q ss_pred CCCCceEEEeeccCC----eEEEccCCCCCCCCCCCchhhhhheeeeeeeEeeccccccccccccccCCCCCcceeeeEE
Q psy12394 5 PRPAVWALERSADNG----ITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYS 80 (1873)
Q Consensus 5 prp~~~~~ers~d~g----i~~s~~~~rp~~~~~~~s~~l~~~~~at~ir~~~~~~~t~~~~~~~~~~~~~~~~~~~yYa 80 (1873)
-+|..+.||-|.|+. |..-...+.+....+ +-+=++|++|||+++... . ...|++
T Consensus 81 ~~~~~~~I~~S~Dg~~W~~v~~~~~~~~~~~~~~-----~~~~~~aRYVRi~~~~~~-----------~-----~~~~~s 139 (159)
T 3f2z_A 81 NPIKVVRFEASEDGTNWESIGQFGFTNQDAALKY-----YVKSSTARYIKLVIPDGV-----------G-----NGTVAA 139 (159)
T ss_dssp CCCCEEEEEEESSSSSCEEEEEEECCCCSSCEEE-----CCCCEEEEEEEEEECSSS-----------S-----CCSCCE
T ss_pred CCeeEEEEEEEcCCCCeEEeEEeecCCCCccEEE-----ecCCceEEEEEEEEEecc-----------C-----CCceEE
Confidence 478889999999975 221111121111111 112368999999886421 0 125678
Q ss_pred eeeeeeeee
Q psy12394 81 IKDISIGGR 89 (1873)
Q Consensus 81 i~d~~v~gr 89 (1873)
|.+|.|-|.
T Consensus 140 i~Ei~vy~~ 148 (159)
T 3f2z_A 140 IRELDVRGT 148 (159)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEcC
Confidence 999988653
No 160
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1
Probab=31.29 E-value=27 Score=29.32 Aligned_cols=19 Identities=37% Similarity=0.817 Sum_probs=15.1
Q ss_pred CeeecCCC--ceecCCCCcCC
Q psy12394 228 GNCAEGTG--KCECRPEYTKP 246 (1873)
Q Consensus 228 g~C~~~~g--~C~C~~G~~G~ 246 (1873)
.+|.+..| +|.|++||++.
T Consensus 24 ~~C~n~~Gsy~C~C~~Gy~~~ 44 (53)
T 1apq_A 24 HLCHNYVGGYFCSCRPGYELQ 44 (53)
T ss_dssp SEEEEETTEEEEECSTTCEEC
T ss_pred CEeECCCCCeEEECCCCCeEC
Confidence 47887654 89999999864
No 161
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A
Probab=30.38 E-value=14 Score=42.91 Aligned_cols=8 Identities=25% Similarity=0.630 Sum_probs=3.4
Q ss_pred EEeeccCC
Q psy12394 1052 DIAGTVNN 1059 (1873)
Q Consensus 1052 ~~~~~v~~ 1059 (1873)
.|.|.||.
T Consensus 169 ~i~G~vP~ 176 (285)
T 1gl4_A 169 ELEGRVPQ 176 (285)
T ss_dssp EEEEEECC
T ss_pred EEeeecCC
Confidence 34444443
No 162
>1ext_A Tumor necrosis factor receptor; binding protein, cytokine, signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R
Probab=30.01 E-value=13 Score=39.51 Aligned_cols=25 Identities=28% Similarity=0.874 Sum_probs=15.5
Q ss_pred cCCccccCCCccccCCCCcCCcccc
Q psy12394 1552 NRKCDACVDGTYALQDNNLFGCTEC 1576 (1873)
Q Consensus 1552 g~~Cd~C~~g~~~~~~~~~~gc~~c 1576 (1873)
...|..|.+|+|.+....+..|..|
T Consensus 39 ~t~C~~C~~gty~~~~n~~~~C~~C 63 (162)
T 1ext_A 39 DTDCRECESGSFTASENHLRHCLSC 63 (162)
T ss_dssp CCEEEECCTTEECCSSBCCSSCEEC
T ss_pred CcccccCCCCccccccCCCCccccc
Confidence 3567788888885444334456666
No 163
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A
Probab=29.45 E-value=13 Score=43.04 Aligned_cols=34 Identities=26% Similarity=0.678 Sum_probs=25.2
Q ss_pred CCCCCC--CCCCCCCcEeeeeccCCCCCeeeCCCCcccC
Q psy12394 395 GYPNCE--PCKCHMNGTLDFYCEPASGQQCPCKENYAGD 431 (1873)
Q Consensus 395 ~~~~C~--~~~C~n~gtc~~~cd~~~g~~C~C~~g~~G~ 431 (1873)
++++|. ..+|..+++|. +...+|.|.|++||.|+
T Consensus 4 DiDEC~~~~~~C~~~a~C~---Nt~Gsy~C~C~~Gy~Gn 39 (285)
T 1gl4_A 4 AQQTCANNRHQCSVHAECR---DYATGFCCRCVANYTGN 39 (285)
T ss_dssp ---CHHHHGGGSCTTEEEE---ECSSCEEEEECTTEEEC
T ss_pred cchhccCCCCCCCCCCEeE---cCCCCeEEEcCCCCCCC
Confidence 356776 56899999984 56778999999999954
No 164
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Probab=28.82 E-value=22 Score=50.24 Aligned_cols=37 Identities=24% Similarity=0.582 Sum_probs=31.3
Q ss_pred CCCCCCCCCCCCcEeeeeccCCCCCeeeCC-CCcccCCCCc
Q psy12394 396 YPNCEPCKCHMNGTLDFYCEPASGQQCPCK-ENYAGDHCDT 435 (1873)
Q Consensus 396 ~~~C~~~~C~n~gtc~~~cd~~~g~~C~C~-~g~~G~~Ce~ 435 (1873)
.+.|.+.||.|+|+|. +..++|.|.|+ +||+|..|+.
T Consensus 619 ~~~C~~~pC~ngg~C~---~~~~~~~C~C~~~g~~G~~C~~ 656 (1245)
T 3qcw_A 619 AKPCLSNPCKNNGMCR---DGWNRYVCDCSGTGYLGRSCER 656 (1245)
T ss_dssp SCGGGSCCCCTTCEEE---ECSSSEEEECTTTTEESTTSCE
T ss_pred CCCCCccCCCCCCEEe---CCCCCeEEECCCCCcccccCcc
Confidence 3568889999999985 45678999999 7999999984
No 165
>2hey_R Tumor necrosis factor receptor superfamily member; cytokine, receptor-ligan complex, CO-stimulator, TNFSF; 2.00A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 2hev_R
Probab=28.61 E-value=42 Score=34.86 Aligned_cols=51 Identities=31% Similarity=0.788 Sum_probs=28.1
Q ss_pred CCccEEcCCCCCcCCCCCCCcccC-CCCCC-cccCccccCCCCCCCcccccCCCc
Q psy12394 1445 GDSCQYCAPGYYGNAVSLKNCVKC-NCNPE-GVLKTFAGCGSLPAGELCECKPKV 1497 (1873)
Q Consensus 1445 G~~c~~c~pg~yG~~~~~~~c~~c-~c~~~-~~~~~~~~~~~~~~~~~c~C~~~v 1497 (1873)
...|.-|.+|+|-+......|.+| .|.+. +.. ....+.. ...-.|.|++++
T Consensus 37 ~t~C~~C~~gty~~~~~~~~C~~C~~C~~~~g~~-~~~~Ct~-t~dt~C~C~~G~ 89 (146)
T 2hey_R 37 NTVCRPCGPGFYNDVVSSKPCKPCTWCNLRSGSE-RKQLCTA-TQDTVCRCRAGT 89 (146)
T ss_dssp CCEEEECCTTEECCSCBSSCCEECCCCCGGGTEE-EEECCBT-TBCCEEEECTTE
T ss_pred CCCcccCCCCCEECCCCCCcCcccCCCCCCCCce-EeccCcc-CCCccccCCCCe
Confidence 356788999999666544567777 56442 110 0111111 334467777764
No 166
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex, transferase-growth F complex; HET: NAG FUC BMA MAN; 2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
Probab=25.81 E-value=41 Score=42.40 Aligned_cols=76 Identities=22% Similarity=0.543 Sum_probs=44.7
Q ss_pred cee-eccCCcccCCCc-ccCCCcccCCCCCCccccCCCccccccCCCCceee--ccCcc---ccCCCC-cCCCCccccCC
Q psy12394 1310 GSC-SCKENIVGRTCD-HCVEGHWSFPYCVPCECDLRGTTIDICNQGTAECY--CKKNV---YGAACD-VCKEGTFDIQA 1381 (1873)
Q Consensus 1310 G~C-~C~~~~~G~~C~-~C~~G~~g~p~C~~C~C~~~gs~~~~Cd~~~G~C~--C~~~~---~G~~Cd-~C~~g~~g~~~ 1381 (1873)
.+| .|++...+..|- .|.+|||.++.=..+.+++.+... ...+|. |+.++ .+.+|- .|.+|||....
T Consensus 222 ~~C~~C~~~~~~~~Cv~~Cp~g~y~~~~~~~~~~~p~~~~~-----~~~~Cv~~Cp~~~~l~~~g~Cv~~Cp~G~y~~~~ 296 (501)
T 1mox_A 222 SDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYS-----FGATCVKKCPRNYVVTDHGSCVRACGADSYEMEE 296 (501)
T ss_dssp TTEEEESSEEETTEEESSCCCSEEEETTTTEEEECTTCCEE-----ETTEEESSCCTTCEECTTSBEESSCCSSCCCBCS
T ss_pred cccccccccCCCCcccccCCCCeeecCCceEEecCCCcccc-----chhhhhcccCcccEeccCCEEeccCCCCCeecCC
Confidence 355 588777777884 699999877742223333332211 124563 87764 355776 68899986543
Q ss_pred CCCCCCccc
Q psy12394 1382 DNVDGCTRC 1390 (1873)
Q Consensus 1382 ~~~~gC~~C 1390 (1873)
.....|.+|
T Consensus 297 ~~~~~C~~C 305 (501)
T 1mox_A 297 DGVRKCKKC 305 (501)
T ss_dssp SSSCBCCCC
T ss_pred CCCCcCcCC
Confidence 223357776
No 167
>3ggl_A Putative chitobiase; X-RAY, structure genomics, NESG, BTR324A, Q8A9F0_bactn, BT_0865, PSI-2, protein structure initiative; 3.00A {Bacteroides thetaiotaomicron}
Probab=25.01 E-value=1.2e+02 Score=31.92 Aligned_cols=65 Identities=15% Similarity=0.187 Sum_probs=36.8
Q ss_pred CCCCCceEEEeeccCC----eEEEccCCCCCCCCCCCchhhhhheeeeeeeEeeccccccccccccccCCCCCcceeeeE
Q psy12394 4 SPRPAVWALERSADNG----ITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFY 79 (1873)
Q Consensus 4 sprp~~~~~ers~d~g----i~~s~~~~rp~~~~~~~s~~l~~~~~at~ir~~~~~~~t~~~~~~~~~~~~~~~~~~~yY 79 (1873)
.-+|..+-||-|.|+. |..-...+.+....+ +-+=++|++|||+++.... ...|.
T Consensus 90 ~~~~~~y~I~~S~Dg~~W~~v~~~~~~~~~~~~~~-----~f~~~~aRYVRi~~~~~~~----------------~~~~~ 148 (169)
T 3ggl_A 90 NNPIKVVEFAASEDNVNWTPIGRFGFTNQDAALEY-----YVKSIKARYIRLTIPDDGG----------------NSTVA 148 (169)
T ss_dssp CCCCCEEEEEEESSSSCCEEEEEEECCCCSSCEEE-----CCCCEEEEEEEEEECSSSS----------------CCSCC
T ss_pred CCCeeEEEEEEeCCCCCcEEeEEEEeccCCCcEEE-----EecCceEEEEEEEEEeCCC----------------CCceE
Confidence 3467888999999865 211111111121111 1123689999998864210 12467
Q ss_pred Eeeeeeeeee
Q psy12394 80 SIKDISIGGR 89 (1873)
Q Consensus 80 ai~d~~v~gr 89 (1873)
+|.+|.|-|.
T Consensus 149 si~Ei~vy~~ 158 (169)
T 3ggl_A 149 AIRELDVKGT 158 (169)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEcC
Confidence 8999988663
No 168
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}
Probab=24.38 E-value=37 Score=41.47 Aligned_cols=34 Identities=29% Similarity=0.788 Sum_probs=26.5
Q ss_pred CCCccCCCCCCCCCCeeecC--CCceecCC-CCcCCCCcc
Q psy12394 214 DVCQPCQCAFHYATGNCAEG--TGKCECRP-EYTKPDCNS 250 (1873)
Q Consensus 214 ~~C~~C~C~~~~n~g~C~~~--~g~C~C~~-G~~G~~Ce~ 250 (1873)
+.|.+-+|. |+|+|.+. .+.|.|+. ||+|+.|+.
T Consensus 186 ~~C~~~pC~---n~g~C~~~~~~~~C~C~~~~~~G~~C~~ 222 (410)
T 3asi_A 186 TTCQEDSCS---NQGVCLQQWDGFSCDCSMTSFSGPLCND 222 (410)
T ss_dssp SCCCTTSSS---TTCEEEECSSSEEEECTTTSEESTTSCE
T ss_pred CCcccccCC---CCCEecCCCCCceEeccCCcccCCCCCC
Confidence 456655555 99999875 45999996 999999985
No 169
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Probab=23.43 E-value=32 Score=33.60 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=16.9
Q ss_pred Ccccccc-CCCCCceecCCCcccC
Q psy12394 746 TFAGCGS-LPAGELCECKPKVQGR 768 (1873)
Q Consensus 746 ~~~~C~~-~~~~g~C~C~~g~~G~ 768 (1873)
.++.|.. .++..+|+|++||.|+
T Consensus 20 ~NA~C~r~~~G~e~CrCl~gY~~d 43 (105)
T 1n1i_A 20 ENAACYRYLDGTEEWRCLLGFKEV 43 (105)
T ss_dssp TTEEEEECTTSCEEEEECTTEEEC
T ss_pred CCCCeEECCCCCEeEEEECCeecc
Confidence 3445655 4566789999999986
No 170
>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=20.69 E-value=44 Score=30.33 Aligned_cols=33 Identities=12% Similarity=0.121 Sum_probs=22.1
Q ss_pred CCCCCCC--CCCCCCcEeeeeccCCCCCeee-CCCCccc
Q psy12394 395 GYPNCEP--CKCHMNGTLDFYCEPASGQQCP-CKENYAG 430 (1873)
Q Consensus 395 ~~~~C~~--~~C~n~gtc~~~cd~~~g~~C~-C~~g~~G 430 (1873)
++++|.. .+|.++++|. +...+|.|. ++.||.+
T Consensus 2 DidEC~~~~~~C~~~~~C~---Nt~Gsy~C~~~~~g~~~ 37 (71)
T 2kl7_A 2 DVNECLTIPEACKGEMKCI---NHYGGYLCLPRSAAVIN 37 (71)
T ss_dssp CSCCTTCCCCSCTTEEEEE---ETTCCEEEEETTSCCCS
T ss_pred ccccccCCCCCCCCCCEeE---CCCCCeEecccCCcccc
Confidence 3566753 5688888874 566778997 4456664
Done!