RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12394
(1873 letters)
>gnl|CDD|214532 smart00136, LamNT, Laminin N-terminal domain (domain VI).
N-terminal domain of laminins and laminin-related
protein such as Unc-6/ netrins.
Length = 238
Score = 95.9 bits (239), Expect = 1e-21
Identities = 35/78 (44%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 11 ALERSADNGITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQD 70
+ I SLL+ RPS +F NS LQEW ATN+R+RL R + L LM
Sbjct: 164 DIVPLEGGEIAFSLLEGRPSATDFDNSPVLQEWVTATNIRVRLTRLRTLGDELMDDR--- 220
Query: 71 PTTTRRYFYSIKDISIGG 88
P TRRY+Y+I DI++GG
Sbjct: 221 PEVTRRYYYAISDIAVGG 238
>gnl|CDD|215682 pfam00055, Laminin_N, Laminin N-terminal (Domain VI).
Length = 237
Score = 73.7 bits (181), Expect = 3e-14
Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 12 LERSADNGITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDP 71
+E + + S L+ RPS NF S RLQEW +ATN+R+ L R L +L+ D DP
Sbjct: 164 IEPLTEGEVIFSTLEGRPSADNFDPSPRLQEWLKATNIRITLQRLHTLGDNLL---DSDP 220
Query: 72 TTTRRYFYSIKDISIGG 88
+Y+Y+I DI +GG
Sbjct: 221 EVLEKYYYAISDIVVGG 237
>gnl|CDD|238012 cd00055, EGF_Lam, Laminin-type epidermal growth factor-like domain;
laminins are the major noncollagenous components of
basement membranes that mediate cell adhesion, growth
migration, and differentiation; the laminin-type
epidermal growth factor-like module occurs in tandem
arrays; the domain contains 4 disulfide bonds (loops a-d)
the first three resemble epidermal growth factor (EGF);
the number of copies of this domain in the different
forms of laminins is highly variable ranging from 3 up to
22 copies.
Length = 50
Score = 58.1 bits (141), Expect = 9e-11
Identities = 25/44 (56%), Positives = 30/44 (68%)
Query: 1200 PCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPD 1243
PC C+ GS S +C+ GQC+CKPN GRRC+ CA GYYG P
Sbjct: 1 PCDCNGHGSLSGQCDPGTGQCECKPNTTGRRCDRCAPGYYGLPS 44
Score = 54.7 bits (132), Expect = 2e-09
Identities = 21/43 (48%), Positives = 26/43 (60%)
Query: 555 CNCDIRGTEAGICDKTNGSCLCKEGYTGARCDQCKAGYYGYPD 597
C+C+ G+ +G CD G C CK TG RCD+C GYYG P
Sbjct: 2 CDCNGHGSLSGQCDPGTGQCECKPNTTGRRCDRCAPGYYGLPS 44
Score = 52.7 bits (127), Expect = 1e-08
Identities = 23/43 (53%), Positives = 27/43 (62%)
Query: 310 PCECNAVGSLSDLCEVDSGNCTCRNNFAGRTCDSCADGYYNYP 352
PC+CN GSLS C+ +G C C+ N GR CD CA GYY P
Sbjct: 1 PCDCNGHGSLSGQCDPGTGQCECKPNTTGRRCDRCAPGYYGLP 43
Score = 50.8 bits (122), Expect = 4e-08
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 263 PCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFPT 307
PC C+ +G+L C+P +GQ C CK N G CD CA GYY P+
Sbjct: 1 PCDCNGHGSLSGQCDPGTGQ-CECKPNTTGRRCDRCAPGYYGLPS 44
Score = 50.8 bits (122), Expect = 4e-08
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 401 PCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFPT 445
PC C+ +G+L C+P +GQ C CK N G CD CA GYY P+
Sbjct: 1 PCDCNGHGSLSGQCDPGTGQ-CECKPNTTGRRCDRCAPGYYGLPS 44
Score = 47.7 bits (114), Expect = 5e-07
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 645 ACNCDSHGNIGVSCD-DDGKCQCEKNFGGDRCERCKEGLYNFP 686
C+C+ HG++ CD G+C+C+ N G RC+RC G Y P
Sbjct: 1 PCDCNGHGSLSGQCDPGTGQCECKPNTTGRRCDRCAPGYYGLP 43
Score = 47.7 bits (114), Expect = 5e-07
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 690 ACNCDSHGNIGVSCD-DDGKCQCEKNFGGDRCERCKEGLYNFP 731
C+C+ HG++ CD G+C+C+ N G RC+RC G Y P
Sbjct: 1 PCDCNGHGSLSGQCDPGTGQCECKPNTTGRRCDRCAPGYYGLP 43
Score = 47.3 bits (113), Expect = 7e-07
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 1292 CNCHPHGVNGTQQCDLFDGSCSCKENIVGRTCDHCVEGHWSFP 1334
C+C+ HG Q CD G C CK N GR CD C G++ P
Sbjct: 2 CDCNGHGSLSGQ-CDPGTGQCECKPNTTGRRCDRCAPGYYGLP 43
Score = 42.7 bits (101), Expect = 3e-05
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 1338 PCECDLRGTTIDICNQGTAECYCKKNVYGAACDVCKEGTFD 1378
PC+C+ G+ C+ GT +C CK N G CD C G +
Sbjct: 1 PCDCNGHGSLSGQCDPGTGQCECKPNTTGRRCDRCAPGYYG 41
Score = 42.3 bits (100), Expect = 5e-05
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 601 CGCSAVGSSSTACD-VSGKCPCLVNFGGKTCSQCSPGFYQYP 641
C C+ GS S CD +G+C C N G+ C +C+PG+Y P
Sbjct: 2 CDCNGHGSLSGQCDPGTGQCECKPNTTGRRCDRCAPGYYGLP 43
Score = 40.8 bits (96), Expect = 2e-04
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 1414 PCECSGNINRTDPGSCDSVTGECTGCLFNSAGDSCQYCAPGYYGNAVSLKNCV 1466
PC+C+G+ + G CD TG+C C N+ G C CAPGYYG C
Sbjct: 1 PCDCNGHG--SLSGQCDPGTGQCE-CKPNTTGRRCDRCAPGYYGLPSQGGGCQ 50
Score = 38.9 bits (91), Expect = 7e-04
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 1702 CHMNGTLNFYCEPTSGQQCPCKENYAGDHCDTCA 1735
C+ +G+L+ C+P +GQ C CK N G CD CA
Sbjct: 4 CNGHGSLSGQCDPGTGQ-CECKPNTTGRRCDRCA 36
Score = 38.9 bits (91), Expect = 7e-04
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 1246 PCNCPFTA----VCDSYTGECICAARVIGKKCDQCEPNTFGYD 1284
PC+C CD TG+C C G++CD+C P +G
Sbjct: 1 PCDCNGHGSLSGQCDPGTGQCECKPNTTGRRCDRCAPGYYGLP 43
Score = 37.3 bits (87), Expect = 0.003
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 218 PCQCAFHYATGN-CAEGTGKCECRPEYTKPDCNSCAFGYFGYP 259
PC C H + C GTG+CEC+P T C+ CA GY+G P
Sbjct: 1 PCDCNGHGSLSGQCDPGTGQCECKPNTTGRRCDRCAPGYYGLP 43
Score = 37.3 bits (87), Expect = 0.003
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 89 RCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWR 136
C CNGH + DP C C+ NT G C+ C PGY +
Sbjct: 1 PCDCNGHGSLSGQCDPGTG---QCECKPNTTGRRCDRCAPGYYGLPSQ 45
Score = 36.2 bits (84), Expect = 0.007
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 791 CDCYTLGTIGGIKNCNPKSGQCVCKATAMNRKCDACMDGTY 831
CDC G++ G C+P +GQC CK R+CD C G Y
Sbjct: 2 CDCNGHGSLSG--QCDPGTGQCECKPNTTGRRCDRCAPGYY 40
Score = 35.8 bits (83), Expect = 0.008
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 1523 CDCYTLGTIGGIKNCNPKSGQCVCKATAMNRKCDACVDGTY 1563
CDC G++ G C+P +GQC CK R+CD C G Y
Sbjct: 2 CDCNGHGSLSG--QCDPGTGQCECKPNTTGRRCDRCAPGYY 40
Score = 35.8 bits (83), Expect = 0.009
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 356 SCQCAFHYATGN-CAEGTGKCECRPEYTKPDCNSCAFGYFGYP 397
C C H + C GTG+CEC+P T C+ CA GY+G P
Sbjct: 1 PCDCNGHGSLSGQCDPGTGQCECKPNTTGRRCDRCAPGYYGLP 43
Score = 34.6 bits (80), Expect = 0.024
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 1648 DCQHNTLGDQCEQCQPGYHGNATQG 1672
+C+ NT G +C++C PGY+G +QG
Sbjct: 22 ECKPNTTGRRCDRCAPGYYGLPSQG 46
Score = 33.5 bits (77), Expect = 0.052
Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 736 CNCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDECRPLYWNLKASNPDGCE 789
C+CN G L C P CECKP GR CD C P Y+ L S GC+
Sbjct: 2 CDCNGHGSLSG--QC--DPGTGQCECKPNTTGRRCDRCAPGYYGL-PSQGGGCQ 50
Score = 33.5 bits (77), Expect = 0.052
Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 1468 CNCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDECRPLYWNLKASNPDGCE 1521
C+CN G L C P CECKP GR CD C P Y+ L S GC+
Sbjct: 2 CDCNGHGSLSG--QC--DPGTGQCECKPNTTGRRCDRCAPGYYGL-PSQGGGCQ 50
Score = 30.0 bits (68), Expect = 1.0
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 1768 GGGVCQECRDNTEGINCHQCVAGYYRP 1794
G G C EC+ NT G C +C GYY
Sbjct: 17 GTGQC-ECKPNTTGRRCDRCAPGYYGL 42
>gnl|CDD|215680 pfam00053, Laminin_EGF, Laminin EGF-like (Domains III and V). This
family is like pfam00008 but has 8 conserved cysteines
instead of six.
Length = 49
Score = 55.4 bits (134), Expect = 9e-10
Identities = 23/49 (46%), Positives = 26/49 (53%)
Query: 1201 CQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNC 1249
C C+ GS S C+ GQC CKP V GR C+ C GYYG P C
Sbjct: 1 CDCNPHGSLSDTCDPETGQCLCKPGVTGRHCDRCKPGYYGLPSDPGQGC 49
Score = 51.6 bits (124), Expect = 2e-08
Identities = 24/49 (48%), Positives = 29/49 (59%)
Query: 555 CNCDIRGTEAGICDKTNGSCLCKEGYTGARCDQCKAGYYGYPDCKLCGC 603
C+C+ G+ + CD G CLCK G TG CD+CK GYYG P GC
Sbjct: 1 CDCNPHGSLSDTCDPETGQCLCKPGVTGRHCDRCKPGYYGLPSDPGQGC 49
Score = 48.1 bits (115), Expect = 3e-07
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 1339 CECDLRGTTIDICNQGTAECYCKKNVYGAACDVCKEGTFDIQADNVDGC 1387
C+C+ G+ D C+ T +C CK V G CD CK G + + +D GC
Sbjct: 1 CDCNPHGSLSDTCDPETGQCLCKPGVTGRHCDRCKPGYYGLPSDPGQGC 49
Score = 47.7 bits (114), Expect = 5e-07
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 264 CKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFPTCSPCEC 313
C C+ +G+L C+P +GQ C CK G HCD C GYY P+ C
Sbjct: 1 CDCNPHGSLSDTCDPETGQ-CLCKPGVTGRHCDRCKPGYYGLPSDPGQGC 49
Score = 46.6 bits (111), Expect = 1e-06
Identities = 21/42 (50%), Positives = 26/42 (61%)
Query: 311 CECNAVGSLSDLCEVDSGNCTCRNNFAGRTCDSCADGYYNYP 352
C+CN GSLSD C+ ++G C C+ GR CD C GYY P
Sbjct: 1 CDCNPHGSLSDTCDPETGQCLCKPGVTGRHCDRCKPGYYGLP 42
Score = 46.2 bits (110), Expect = 2e-06
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 1292 CNCHPHGVNGTQQCDLFDGSCSCKENIVGRTCDHCVEGHWSFPYCVPCEC 1341
C+C+PHG CD G C CK + GR CD C G++ P C
Sbjct: 1 CDCNPHGSLSDT-CDPETGQCLCKPGVTGRHCDRCKPGYYGLPSDPGQGC 49
Score = 44.7 bits (106), Expect = 5e-06
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 402 CKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFPT 445
C C+ +G+L C+P +GQ C CK G HCD C GYY P+
Sbjct: 1 CDCNPHGSLSDTCDPETGQ-CLCKPGVTGRHCDRCKPGYYGLPS 43
Score = 43.5 bits (103), Expect = 1e-05
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 691 CNCDSHGNIGVSCD-DDGKCQCEKNFGGDRCERCKEGLYNFPICEECNC 738
C+C+ HG++ +CD + G+C C+ G C+RCK G Y P C
Sbjct: 1 CDCNPHGSLSDTCDPETGQCLCKPGVTGRHCDRCKPGYYGLPSDPGQGC 49
Score = 43.5 bits (103), Expect = 1e-05
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 646 CNCDSHGNIGVSCD-DDGKCQCEKNFGGDRCERCKEGLYNFPICEACNC 693
C+C+ HG++ +CD + G+C C+ G C+RCK G Y P C
Sbjct: 1 CDCNPHGSLSDTCDPETGQCLCKPGVTGRHCDRCKPGYYGLPSDPGQGC 49
Score = 41.2 bits (97), Expect = 1e-04
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 601 CGCSAVGSSSTACD-VSGKCPCLVNFGGKTCSQCSPGFYQYPQCKACNC 648
C C+ GS S CD +G+C C G+ C +C PG+Y P C
Sbjct: 1 CDCNPHGSLSDTCDPETGQCLCKPGVTGRHCDRCKPGYYGLPSDPGQGC 49
Score = 37.3 bits (87), Expect = 0.003
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 1247 CNCP----FTAVCDSYTGECICAARVIGKKCDQCEPNTFGY 1283
C+C + CD TG+C+C V G+ CD+C+P +G
Sbjct: 1 CDCNPHGSLSDTCDPETGQCLCKPGVTGRHCDRCKPGYYGL 41
Score = 36.9 bits (86), Expect = 0.003
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 791 CDCYTLGTIGGIKNCNPKSGQCVCKATAMNRKCDACMDGTYALQDNNLFGC 841
CDC G++ C+P++GQC+CK R CD C G Y L + GC
Sbjct: 1 CDCNPHGSLSD--TCDPETGQCLCKPGVTGRHCDRCKPGYYGLPSDPGQGC 49
Score = 36.9 bits (86), Expect = 0.003
Identities = 23/53 (43%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 736 CNCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDECRPLYWNLKASNPDGC 788
C+CNP G L C P C CKP V GR CD C+P Y+ L + GC
Sbjct: 1 CDCNPHGSLS--DTCD--PETGQCLCKPGVTGRHCDRCKPGYYGLPSDPGQGC 49
Score = 36.9 bits (86), Expect = 0.003
Identities = 23/53 (43%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 1468 CNCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDECRPLYWNLKASNPDGC 1520
C+CNP G L C P C CKP V GR CD C+P Y+ L + GC
Sbjct: 1 CDCNPHGSLS--DTCD--PETGQCLCKPGVTGRHCDRCKPGYYGLPSDPGQGC 49
Score = 35.4 bits (82), Expect = 0.010
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 1523 CDCYTLGTIGGIKNCNPKSGQCVCKATAMNRKCDACVDGTYALQDNNLFGC 1573
CDC G++ C+P++GQC+CK R CD C G Y L + GC
Sbjct: 1 CDCNPHGSLSD--TCDPETGQCLCKPGVTGRHCDRCKPGYYGLPSDPGQGC 49
Score = 35.4 bits (82), Expect = 0.011
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 1702 CHMNGTLNFYCEPTSGQQCPCKENYAGDHCDTCA 1735
C+ +G+L+ C+P +GQ C CK G HCD C
Sbjct: 3 CNPHGSLSDTCDPETGQ-CLCKPGVTGRHCDRCK 35
Score = 35.0 bits (81), Expect = 0.017
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 1415 CECSGNINRTDPGSCDSVTGECTGCLFNSAGDSCQYCAPGYYGNA 1459
C+C+ + + +CD TG+C C G C C PGYYG
Sbjct: 1 CDCNPHG--SLSDTCDPETGQCL-CKPGVTGRHCDRCKPGYYGLP 42
Score = 33.5 bits (77), Expect = 0.052
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 219 CQCAFH-YATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKC 266
C C H + C TG+C C+P T C+ C GY+G P+ C
Sbjct: 1 CDCNPHGSLSDTCDPETGQCLCKPGVTGRHCDRCKPGYYGLPSDPGQGC 49
Score = 33.5 bits (77), Expect = 0.052
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 357 CQCAFH-YATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKC 404
C C H + C TG+C C+P T C+ C GY+G P+ C
Sbjct: 1 CDCNPHGSLSDTCDPETGQCLCKPGVTGRHCDRCKPGYYGLPSDPGQGC 49
Score = 31.9 bits (73), Expect = 0.23
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 1648 DCQHNTLGDQCEQCQPGYHGNATQ 1671
C+ G C++C+PGY+G +
Sbjct: 21 LCKPGVTGRHCDRCKPGYYGLPSD 44
Score = 30.8 bits (70), Expect = 0.48
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 90 CRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGY 130
C CN H + D DPE C C+ G +C+ C PGY
Sbjct: 1 CDCNPHGSLSDTCDPE---TGQCLCKPGVTGRHCDRCKPGY 38
>gnl|CDD|214543 smart00180, EGF_Lam, Laminin-type epidermal growth factor-like domai.
Length = 46
Score = 53.9 bits (130), Expect = 3e-09
Identities = 25/42 (59%), Positives = 28/42 (66%)
Query: 1201 CQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFP 1242
C CD GS S C+ GQC+CKPNV GRRC+ CA GYYG
Sbjct: 1 CDCDPGGSASGTCDPDTGQCECKPNVTGRRCDRCAPGYYGDG 42
Score = 52.7 bits (127), Expect = 8e-09
Identities = 21/42 (50%), Positives = 25/42 (59%)
Query: 555 CNCDIRGTEAGICDKTNGSCLCKEGYTGARCDQCKAGYYGYP 596
C+CD G+ +G CD G C CK TG RCD+C GYYG
Sbjct: 1 CDCDPGGSASGTCDPDTGQCECKPNVTGRRCDRCAPGYYGDG 42
Score = 48.1 bits (115), Expect = 3e-07
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 311 CECNAVGSLSDLCEVDSGNCTCRNNFAGRTCDSCADGYYNYP 352
C+C+ GS S C+ D+G C C+ N GR CD CA GYY
Sbjct: 1 CDCDPGGSASGTCDPDTGQCECKPNVTGRRCDRCAPGYYGDG 42
Score = 46.5 bits (111), Expect = 1e-06
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 264 CKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFP 306
C C G+ C+P +GQ C CK N G CD CA GYY
Sbjct: 1 CDCDPGGSASGTCDPDTGQ-CECKPNVTGRRCDRCAPGYYGDG 42
Score = 46.5 bits (111), Expect = 1e-06
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 402 CKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFP 444
C C G+ C+P +GQ C CK N G CD CA GYY
Sbjct: 1 CDCDPGGSASGTCDPDTGQ-CECKPNVTGRRCDRCAPGYYGDG 42
Score = 42.3 bits (100), Expect = 4e-05
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 646 CNCDSHGNIGVSCD-DDGKCQCEKNFGGDRCERCKEGLYNFP 686
C+CD G+ +CD D G+C+C+ N G RC+RC G Y
Sbjct: 1 CDCDPGGSASGTCDPDTGQCECKPNVTGRRCDRCAPGYYGDG 42
Score = 42.3 bits (100), Expect = 4e-05
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 691 CNCDSHGNIGVSCD-DDGKCQCEKNFGGDRCERCKEGLYNFP 731
C+CD G+ +CD D G+C+C+ N G RC+RC G Y
Sbjct: 1 CDCDPGGSASGTCDPDTGQCECKPNVTGRRCDRCAPGYYGDG 42
Score = 41.9 bits (99), Expect = 6e-05
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 1292 CNCHPHGVNGTQQCDLFDGSCSCKENIVGRTCDHCVEGHW--SFPYC 1336
C+C P G + + CD G C CK N+ GR CD C G++ P C
Sbjct: 1 CDCDPGG-SASGTCDPDTGQCECKPNVTGRRCDRCAPGYYGDGPPGC 46
Score = 40.4 bits (95), Expect = 2e-04
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 1339 CECDLRGTTIDICNQGTAECYCKKNVYGAACDVCKEGTFDIQAD 1382
C+CD G+ C+ T +C CK NV G CD C G +
Sbjct: 1 CDCDPGGSASGTCDPDTGQCECKPNVTGRRCDRCAPGYYGDGPP 44
Score = 39.2 bits (92), Expect = 5e-04
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 601 CGCSAVGSSSTACD-VSGKCPCLVNFGGKTCSQCSPGFYQYP 641
C C GS+S CD +G+C C N G+ C +C+PG+Y
Sbjct: 1 CDCDPGGSASGTCDPDTGQCECKPNVTGRRCDRCAPGYYGDG 42
Score = 37.7 bits (88), Expect = 0.002
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 1702 CHMNGTLNFYCEPTSGQQCPCKENYAGDHCDTCA 1735
C G+ + C+P +GQ C CK N G CD CA
Sbjct: 3 CDPGGSASGTCDPDTGQ-CECKPNVTGRRCDRCA 35
Score = 36.9 bits (86), Expect = 0.003
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 1247 CNCP----FTAVCDSYTGECICAARVIGKKCDQCEPNTFGYDP 1285
C+C + CD TG+C C V G++CD+C P +G P
Sbjct: 1 CDCDPGGSASGTCDPDTGQCECKPNVTGRRCDRCAPGYYGDGP 43
Score = 36.5 bits (85), Expect = 0.004
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 791 CDCYTLGTIGGIKNCNPKSGQCVCKATAMNRKCDACMDGTY 831
CDC G+ G C+P +GQC CK R+CD C G Y
Sbjct: 1 CDCDPGGSASG--TCDPDTGQCECKPNVTGRRCDRCAPGYY 39
Score = 35.7 bits (83), Expect = 0.008
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 1523 CDCYTLGTIGGIKNCNPKSGQCVCKATAMNRKCDACVDGTY 1563
CDC G+ G C+P +GQC CK R+CD C G Y
Sbjct: 1 CDCDPGGSASG--TCDPDTGQCECKPNVTGRRCDRCAPGYY 39
Score = 33.8 bits (78), Expect = 0.038
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 1415 CECSGNINRTDPGSCDSVTGECTGCLFNSAGDSCQYCAPGYYGN 1458
C+C + + G+CD TG+C C N G C CAPGYYG+
Sbjct: 1 CDC--DPGGSASGTCDPDTGQCE-CKPNVTGRRCDRCAPGYYGD 41
Score = 33.1 bits (76), Expect = 0.082
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 219 CQC-AFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYP 259
C C A+G C TG+CEC+P T C+ CA GY+G
Sbjct: 1 CDCDPGGSASGTCDPDTGQCECKPNVTGRRCDRCAPGYYGDG 42
Score = 33.1 bits (76), Expect = 0.082
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 357 CQC-AFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYP 397
C C A+G C TG+CEC+P T C+ CA GY+G
Sbjct: 1 CDCDPGGSASGTCDPDTGQCECKPNVTGRRCDRCAPGYYGDG 42
Score = 31.9 bits (73), Expect = 0.22
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 1648 DCQHNTLGDQCEQCQPGYHGNATQG 1672
+C+ N G +C++C PGY+G+ G
Sbjct: 21 ECKPNVTGRRCDRCAPGYYGDGPPG 45
Score = 30.0 bits (68), Expect = 0.79
Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 736 CNCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDECRPLYWNLKASNPDGC 788
C+C+P G A P CECKP V GR CD C P Y+ P GC
Sbjct: 1 CDCDPGGS----ASGTCDPDTGQCECKPNVTGRRCDRCAPGYYG---DGPPGC 46
Score = 30.0 bits (68), Expect = 0.79
Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 1468 CNCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDECRPLYWNLKASNPDGC 1520
C+C+P G A P CECKP V GR CD C P Y+ P GC
Sbjct: 1 CDCDPGGS----ASGTCDPDTGQCECKPNVTGRRCDRCAPGYYG---DGPPGC 46
Score = 29.2 bits (66), Expect = 1.9
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 106 DPYHRICRCQHNTCGHNCEVCCPGY 130
DP C C+ N G C+ C PGY
Sbjct: 14 DPDTGQCECKPNVTGRRCDRCAPGY 38
Score = 27.3 bits (61), Expect = 9.2
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 1769 GGVCQECRDNTEGINCHQCVAGYYR 1793
G C EC+ N G C +C GYY
Sbjct: 17 TGQC-ECKPNVTGRRCDRCAPGYYG 40
>gnl|CDD|185165 PRK15253, PRK15253, putative fimbrial assembly chaperone protein
StcB; Provisional.
Length = 242
Score = 33.9 bits (77), Expect = 0.57
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 1004 VQAMFPTSPETKKIEAESGLGPLATQLPGSLADNKTGLVYLDHKD 1048
+Q F +P ++ AESG ++P SL DNK L YL+ D
Sbjct: 81 IQVPFMLTPPVARVAAESGQQIKIKKMPNSLPDNKESLFYLNVLD 125
>gnl|CDD|203332 pfam05831, GAGE, GAGE protein. This family consists of several GAGE
and XAGE proteins which are found exclusively in humans.
The function of this family is unknown although they have
been implicated in human cancers.
Length = 112
Score = 32.2 bits (73), Expect = 0.80
Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 961 TADENPTNNASAAIQKIVAIPEAKWSMDHIQPKTECVRKDGQCVQAMF-PTSPETKKIEA 1019
T + + +AAIQ EA + Q KT DG V+ P S + K EA
Sbjct: 49 TPGQEREDEGAAAIQ--GPDLEA-DLQELSQSKTGDECGDGPDVKGKILPNSEQFKMPEA 105
Query: 1020 ESG 1022
G
Sbjct: 106 GEG 108
>gnl|CDD|216766 pfam01889, DUF63, Membrane protein of unknown function DUF63.
Proteins found in Archaebacteria of unknown function.
These proteins are probably transmembrane proteins.
Length = 272
Score = 32.6 bits (75), Expect = 1.7
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 479 LCLTCVKLILAIVRAEITLPDVPVIRVLMATITTHAVLFVI 519
L L + L L +V +IT P V V V + ++ T A+++++
Sbjct: 124 LILALINLGLLLVNEKITHPWVLVAVVGLVSVAT-ALIYLL 163
>gnl|CDD|224032 COG1107, COG1107, Archaea-specific RecJ-like exonuclease, contains
DnaJ-type Zn finger domain [DNA replication,
recombination, and repair].
Length = 715
Score = 32.4 bits (74), Expect = 2.7
Identities = 25/111 (22%), Positives = 35/111 (31%), Gaps = 15/111 (13%)
Query: 1285 PIIGCEECNCHPHGVNGTQQCDLFDGSCSCKE---NIVGRTCDHCVEGHWSFPYCVPCE- 1340
I C EC V G ++C + G+ + V V+ SF +PC
Sbjct: 1 MIKKCPECGGKGKIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFE--IPCPK 58
Query: 1341 CDLRGTTIDICNQGTAEC-YCKKNVYGAACDVCKEGTFDIQADNVDGCTRC 1390
C +GT C C CD+C + I C C
Sbjct: 59 CRGKGTV-----TVYDTCPECGGTGKVLTCDICGD---IIVPWEEGLCPEC 101
>gnl|CDD|201894 pfam01630, Glyco_hydro_56, Hyaluronidase.
Length = 339
Score = 31.2 bits (71), Expect = 5.2
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 4/26 (15%)
Query: 1237 GYYGFPDCHPCNCPFTAVCDSYTGEC 1262
GYY FPDC+ N + +YTG+C
Sbjct: 181 GYYLFPDCY--NHDYNQ--PNYTGQC 202
>gnl|CDD|200486 cd11348, AmyAc_2, Alpha amylase catalytic domain found in an
uncharacterized protein family. The Alpha-amylase
family comprises the largest family of glycoside
hydrolases (GH), with the majority of enzymes acting on
starch, glycogen, and related oligo- and
polysaccharides. These proteins catalyze the
transformation of alpha-1,4 and alpha-1,6 glucosidic
linkages with retention of the anomeric center. The
protein is described as having 3 domains: A, B, C. A is
a (beta/alpha) 8-barrel; B is a loop between the beta 3
strand and alpha 3 helix of A; C is the C-terminal
extension characterized by a Greek key. The majority of
the enzymes have an active site cleft found between
domains A and B where a triad of catalytic residues
(Asp, Glu and Asp) performs catalysis. Other members of
this family have lost the catalytic activity as in the
case of the human 4F2hc, or only have 2 residues that
serve as the catalytic nucleophile and the acid/base,
such as Thermus A4 beta-galactosidase with 2 Glu
residues (GH42) and human alpha-galactosidase with 2 Asp
residues (GH31). The catalytic triad (DED) is not
present here. The family members are quite extensive and
include: alpha amylase, maltosyltransferase,
cyclodextrin glycotransferase, maltogenic amylase,
neopullulanase, isoamylase, 1,4-alpha-D-glucan
maltotetrahydrolase, 4-alpha-glucotransferase,
oligo-1,6-glucosidase, amylosucrase, sucrose
phosphorylase, and amylomaltase.
Length = 429
Score = 31.1 bits (71), Expect = 7.0
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 412 FYCEPASGQQCPCKENYAGDHCDTCAQGYYNFPTCSQITLP-----DVPVIRVLMATITT 466
++ G P + Y + T +GY + PTC+ T +++ A + T
Sbjct: 282 YFDASGKGDIKPFVDEYLPQYEATKGKGYISLPTCNHDTPRLNARLTEEELKLAFAFLLT 341
Score = 30.4 bits (69), Expect = 9.5
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 274 FYCEPASGQQCPCKENYAGDHCDTCAQGYYNFPTCS 309
++ G P + Y + T +GY + PTC+
Sbjct: 282 YFDASGKGDIKPFVDEYLPQYEATKGKGYISLPTCN 317
>gnl|CDD|165214 PHA02887, PHA02887, EGF-like protein; Provisional.
Length = 126
Score = 29.5 bits (66), Expect = 8.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 559 IRGTEAGICDKTNGSCLCKEGYTGARCDQ 587
I G I D C+C +GYTG RCD+
Sbjct: 95 INGECMNIIDLDEKFCICNKGYTGIRCDE 123
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.472
Gapped
Lambda K H
0.267 0.0632 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 88,901,109
Number of extensions: 8190305
Number of successful extensions: 6303
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6204
Number of HSP's successfully gapped: 179
Length of query: 1873
Length of database: 10,937,602
Length adjustment: 111
Effective length of query: 1762
Effective length of database: 6,014,308
Effective search space: 10597210696
Effective search space used: 10597210696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (29.4 bits)