RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12394
(1873 letters)
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 234 bits (598), Expect = 2e-66
Identities = 99/357 (27%), Positives = 160/357 (44%), Gaps = 38/357 (10%)
Query: 12 LERSADNGITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDP 71
+E S + + LD + S R+Q + TN+R++ ++ L +L+ D
Sbjct: 180 IEPSTEGEVIFRALDPAFKI-EDPYSPRIQNLLKITNLRIKFVKLHTLGDNLL---DSRM 235
Query: 72 TTTRRYFYSIKDISIGGRCRCNGHADVCDILDP-----EDPYHRICRCQHNTCGHNCEVC 126
+Y+Y++ D+ + G C C GHA C +D E H C C+HNT G NCE+C
Sbjct: 236 EIREKYYYAVYDMVVRGNCFCYGHASECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELC 295
Query: 127 CPGYEQKAWRQSQSNKPFSCEPCNCHGHADKCVYDPMVDEKRLSVDIQGNYEGGGVCQEC 186
Y WR ++ +C+ CNC+ H+ C +D +V + GGVC C
Sbjct: 296 MDFYHDLPWRPAEGRNSNACKKCNCNEHSSSCHFDM-------AVFLATGNVSGGVCDNC 348
Query: 187 RDNTEGINCHQRVAGYYRPYGKHLNETDVCQPCQCAFH----------YATGNCAEGTGK 236
+ NT G NC Q Y++ + + + ++C+PC C Y + G+
Sbjct: 349 QHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQ 408
Query: 237 CECRPEYTKPDCNSCAFGYFGYP-----NCEPCKCHMNGTLDFY--CEPASGQQCPCKEN 289
C C+ C+ C G++ C+ C C+ GT+ C+ +G C CK
Sbjct: 409 CRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETG-YCYCKRL 467
Query: 290 YAGDHCDTCAQGYYNFPT----CSPCECNAVGSLSDLCEVDSGNCTCRNNFAGRTCD 342
G CD C ++ C PC+C+ G+L++ C DSG C+C + GR C+
Sbjct: 468 VTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHMIGRQCN 524
Score = 124 bits (312), Expect = 2e-29
Identities = 75/291 (25%), Positives = 113/291 (38%), Gaps = 53/291 (18%)
Query: 557 CDIRGTEAGICDKTNGSCLCKEGYTGARCDQCKAGYYGYPDCKLCGCSAVGSSSTACDVS 616
+ G + +G C+C+ G C+ C Y+ P + + +
Sbjct: 264 APVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWR----------PAEGRNSN 313
Query: 617 GKCPCLVNFGGKTCSQCSPGFYQYPQCKACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCE 676
C N +C A + G CD+ C+ N G CE
Sbjct: 314 ACKKCNCNEHSSSC----------HFDMAVFLATGNVSGGVCDN-----CQHNTMGRNCE 358
Query: 677 RCKEGLYNFP--------ICEACNCDSHGNIGVSCDDD----------GKCQCEKNFGGD 718
+CK + P +CE C CD G+ D G+C+C+ + G+
Sbjct: 359 QCKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGE 418
Query: 719 RCERCKEGLYNFP-----ICEECNCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDEC 773
RC+ CKEG Y+ C+ C CNP G + C C CK V G+ CD+C
Sbjct: 419 RCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCD--SETGYCYCKRLVTGQRCDQC 476
Query: 774 RPLYWNLKASNPDGCEDCDCYTLGTIGGIKNCNPKSGQCVCKATAMNRKCD 824
P +W L +++ DGC CDC G + C+ SGQC C + R+C+
Sbjct: 477 LPQHWGL-SNDLDGCRPCDCDLGGALNNS--CSEDSGQCSCLPHMIGRQCN 524
Score = 122 bits (307), Expect = 7e-29
Identities = 72/270 (26%), Positives = 113/270 (41%), Gaps = 38/270 (14%)
Query: 1336 CVPCECDLRGTTIDICNQGTAECYCKKNVYGAACDVCKEGTFDIQ-----ADNVDGCTRC 1390
C P + ++ C C+ N G C++C + D+ N + C +C
Sbjct: 263 CAPVDG----VNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKC 318
Query: 1391 FCFGKTTKCSSSNLYRSQLVYCKPCECSGNINRTDPGSCDSVTGECTGCLFNSAGDSCQY 1450
C ++ C + V+ SG G C C N+ G +C+
Sbjct: 319 NCNEHSSSC-----HFDMAVFLATGNVSG--------------GVCDNCQHNTMGRNCEQ 359
Query: 1451 CAPGYYGNAV----SLKNCVKCNCNPEGVL-----KTFAGCGSLPAGELCECKPKVQGRI 1501
C P Y+ + C C C+P G + C CK V+G
Sbjct: 360 CKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGER 419
Query: 1502 CDECRPLYWNLKASNPDGCEDCDCYTLGTIGGIKNCNPKSGQCVCKATAMNRKCDACVDG 1561
CD C+ +++L A +P GC+ C C LGTI G C+ ++G C CK ++CD C+
Sbjct: 420 CDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQ 479
Query: 1562 TYALQDNNLFGCTECACDIGGSINNLCNKS 1591
+ L N+L GC C CD+GG++NN C++
Sbjct: 480 HWGLS-NDLDGCRPCDCDLGGALNNSCSED 508
Score = 120 bits (301), Expect = 4e-28
Identities = 75/271 (27%), Positives = 108/271 (39%), Gaps = 37/271 (13%)
Query: 601 CGCSAVGSSSTACDVSGKCPCLVNFGGKTCSQCSPGFYQYP----------QCKACNCDS 650
C + V G C C N G C C ++ P CK CNC+
Sbjct: 263 CAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNE 322
Query: 651 HGNIGVSCDDDGKCQCEK-NFGGDRCERCKEGLYNFPICEACNCDSHGNIGVSCDDDGKC 709
H + SC D N G C+ C+ CE C + D C
Sbjct: 323 HSS---SCHFDMAVFLATGNVSGGVCDNCQHNTMGRN-CEQCKPFYFQHPERDIRDPNLC 378
Query: 710 Q-CEKNFGGDRCERCKEGLYNFPICEECNCNPEGVLKTFAGCGSLPAGELCECKPKVQGR 768
+ C + G C+ + + AG C CK V+G
Sbjct: 379 EPCTCDPAGSENGGI------------CDGYTDFSVGLIAGQ--------CRCKLHVEGE 418
Query: 769 ICDECRPLYWNLKASNPDGCEDCDCYTLGTIGGIKNCNPKSGQCVCKATAMNRKCDACMD 828
CD C+ +++L A +P GC+ C C LGTI G C+ ++G C CK ++CD C+
Sbjct: 419 RCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLP 478
Query: 829 GTYALQDNNLFGCTECACDIGGSINNLCNKD 859
+ L N+L GC C CD+GG++NN C++D
Sbjct: 479 QHWGLS-NDLDGCRPCDCDLGGALNNSCSED 508
Score = 117 bits (293), Expect = 4e-27
Identities = 71/276 (25%), Positives = 104/276 (37%), Gaps = 23/276 (8%)
Query: 1292 CNCHPHGVNGTQQCDLFDGSCSCKENIVGRTCDHCVEGHWSFPY----------CVPCEC 1341
C P + + G C C+ N G C+ C++ + P+ C C C
Sbjct: 261 SECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNC 320
Query: 1342 DLRGTTIDICNQGTAECYCKKNVYGAACDVCKEGTFDIQADNVDGCTRCFCFGKTTKCSS 1401
+ ++ C+ A NV G CD C+ T N + C +
Sbjct: 321 NEHSSS---CHFDMAVFLATGNVSGGVCDNCQHNTM---GRNCEQCKPFYFQHPERDIRD 374
Query: 1402 SNLYRSQLVYCKPCECSGNINRTDPGSCDSVTGECTGCLFNSAGDSCQYCAPGYYGN-AV 1460
NL E G + S + G+C C + G+ C C G+Y A
Sbjct: 375 PNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCR-CKLHVEGERCDVCKEGFYDLSAE 433
Query: 1461 SLKNCVKCNCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDECRPLYWNLKASNPDGC 1520
C C CNP G + C C CK V G+ CD+C P +W L +++ DGC
Sbjct: 434 DPYGCKSCACNPLGTIPGGNPCD--SETGYCYCKRLVTGQRCDQCLPQHWGL-SNDLDGC 490
Query: 1521 EDCDCYTLGTIGGIKNCNPKSGQCVCKATAMNRKCD 1556
CDC G + C+ SGQC C + R+C+
Sbjct: 491 RPCDCDLGGALNNS--CSEDSGQCSCLPHMIGRQCN 524
Score = 115 bits (290), Expect = 9e-27
Identities = 50/179 (27%), Positives = 77/179 (43%), Gaps = 7/179 (3%)
Query: 1199 LPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNCPFTAVCDSY 1258
CQ + G +C+ F Q + CE C G + C+
Sbjct: 346 DNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLI 405
Query: 1259 TGECICAARVIGKKCDQCEPNTFGY--DPIIGCEECNCHPHG-VNGTQQCDLFDGSCSCK 1315
G+C C V G++CD C+ + + GC+ C C+P G + G CD G C CK
Sbjct: 406 AGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCK 465
Query: 1316 ENIVGRTCDHCVEGHWSFPY----CVPCECDLRGTTIDICNQGTAECYCKKNVYGAACD 1370
+ G+ CD C+ HW C PC+CDL G + C++ + +C C ++ G C+
Sbjct: 466 RLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHMIGRQCN 524
Score = 115 bits (290), Expect = 1e-26
Identities = 78/316 (24%), Positives = 105/316 (33%), Gaps = 63/316 (19%)
Query: 1201 CQCD-IDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPD----------CHPCNC 1249
+C +DG G C C+ N G CE+C Y+ P C CNC
Sbjct: 261 SECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNC 320
Query: 1250 PFTAVCDSYTGECICAA-RVIGKKCDQCEPNTFGYDPIIGCEECNCHPHGVNGTQQCDLF 1308
+ + A V G CD C+ NT G + +QC F
Sbjct: 321 NEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNC-----------------EQCKPF 363
Query: 1309 DGSCSCKENIVGRTCDHCVEGHWSFPYCVPCECDLRGTTIDICNQGTAECYCKKNVYGAA 1368
++ C+ C P G T +C CK +V G
Sbjct: 364 YFQHPERDIRDPNLCEPCTCD----PAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGER 419
Query: 1369 CDVCKEGTFDIQADNVDGCTRCFCFGKTTKCSSSNLYRSQLVYCKPCECSGNINRTDPGS 1428
CDVCKEG +D+ A++ G CK C C+
Sbjct: 420 CDVCKEGFYDLSAEDPYG-------------------------CKSCACNPLGTIPGGNP 454
Query: 1429 CDSVTGECTGCLFNSAGDSCQYCAPGYYGNAVSLKNCVKCNCNPEGVLKTFAGCGSLPAG 1488
CDS TG C C G C C P ++G + L C C+C+ G L
Sbjct: 455 CDSETGYCY-CKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGAL----NNSCSEDS 509
Query: 1489 ELCECKPKVQGRICDE 1504
C C P + GR C+E
Sbjct: 510 GQCSCLPHMIGRQCNE 525
Score = 108 bits (270), Expect = 3e-24
Identities = 53/297 (17%), Positives = 81/297 (27%), Gaps = 68/297 (22%)
Query: 184 QECRDNTEGINCHQRVAGYYRPYGKHLNETDVCQPCQCAFH---------YATGNCAEGT 234
DN R YY + + V C C H
Sbjct: 224 HTLGDNLLDSRMEIREKYYYA-----VYDMVVRGNCFCYGHASECAPVDGVNEEVEGMVH 278
Query: 235 GKCECRPEYTKPDCNSCAFGYFGYP----------NCEPCKCHMNGTLDFY--------C 276
G C CR +C C Y P C+ C C+ + + +
Sbjct: 279 GHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEHSSSCHFDMAVFLATG 338
Query: 277 EPASGQQCPCKENYAGDHCDTCAQGYYNFPTCSPCECNAVGSLSDLCEVDSGNCTCRNNF 336
+ G C+ N G +C+ C Y+ P + N
Sbjct: 339 NVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNL--------------------- 377
Query: 337 AGRTCDSCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGY 396
C+ C C Y + G+C C+ C+ C G++
Sbjct: 378 ----CEPCTCDPAGSENGGICDG---YTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDL 430
Query: 397 P-----NCEPCKCHMNGTLDFY--CEPASGQQCPCKENYAGDHCDTCAQGYYNFPTC 446
C+ C C+ GT+ C+ +G C CK G CD C ++
Sbjct: 431 SAEDPYGCKSCACNPLGTIPGGNPCDSETG-YCYCKRLVTGQRCDQCLPQHWGLSND 486
Score = 96.7 bits (240), Expect = 2e-20
Identities = 41/135 (30%), Positives = 54/135 (40%), Gaps = 13/135 (9%)
Query: 555 CNCDIRGTEAGICDKTNGSCLCKEGYTGARCDQCKAGYYGYP-----DCKLCGCSAVGS- 608
G G C CK G RCD CK G+Y CK C C+ +G+
Sbjct: 390 NGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTI 449
Query: 609 -SSTACD-VSGKCPCLVNFGGKTCSQCSPGFYQYPQ----CKACNCDSHGNIGVSCD-DD 661
CD +G C C G+ C QC P + C+ C+CD G + SC D
Sbjct: 450 PGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDS 509
Query: 662 GKCQCEKNFGGDRCE 676
G+C C + G +C
Sbjct: 510 GQCSCLPHMIGRQCN 524
Score = 74.7 bits (183), Expect = 1e-13
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 553 QVCNCDIRGT--EAGICDKTNGSCLCKEGYTGARCDQCKAGYYGYPD----CKLCGCSAV 606
+ C C+ GT CD G C CK TG RCDQC ++G + C+ C C
Sbjct: 439 KSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLG 498
Query: 607 GSSSTACD-VSGKCPCLVNFGGKTCSQ 632
G+ + +C SG+C CL + G+ C++
Sbjct: 499 GALNNSCSEDSGQCSCLPHMIGRQCNE 525
Score = 72.8 bits (178), Expect = 6e-13
Identities = 52/221 (23%), Positives = 75/221 (33%), Gaps = 52/221 (23%)
Query: 1630 FDMDVLIQNGQFYEAQLPDCQHNTLGDQCEQCQPGYHGNATQGTMADCLICACPLPITSN 1689
FDM V + G +CQHNT+G CEQC+P Y + + L C
Sbjct: 329 FDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCT------ 382
Query: 1690 NFASGCDVSEDGCHMNGTLNFYCEPTSGQQCPCKENYAGDHCDTCA-------------- 1735
SE+G +G +F +G QC CK + G+ CD C
Sbjct: 383 ---CDPAGSENGGICDGYTDFSVGLIAG-QCRCKLHVEGERCDVCKEGFYDLSAEDPYGC 438
Query: 1736 QACNCHGHADKCVYDPMVDEKRLSVDIQGNYEGGGVCQECRDNTEGINCHQCVAGYYR-- 1793
++C C+ +P G C C+ G C QC+ ++
Sbjct: 439 KSCACNPLGTIPGGNP-------------CDSETGYCY-CKRLVTGQRCDQCLPQHWGLS 484
Query: 1794 ------------PYGKHLNETDVCQRQCLCQPRVTGQTCNQ 1822
G N QC C P + G+ CN+
Sbjct: 485 NDLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHMIGRQCNE 525
Score = 67.4 bits (164), Expect = 2e-11
Identities = 37/175 (21%), Positives = 60/175 (34%), Gaps = 53/175 (30%)
Query: 1700 DGCHMNGTLNFYCEPTSGQQCPCKENYAGDHCDTCA-------------------QACNC 1740
C +N E C C+ N G +C+ C + CNC
Sbjct: 261 SECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNC 320
Query: 1741 HGHADKCVYDPMVDEKRLSVDIQGNYEGGGVCQECRDNTEGINCHQCVAGYYRPYGKHLN 1800
+ H+ C +D +V + GGVC C+ NT G NC QC Y++ + +
Sbjct: 321 NEHSSSCHFDM-------AVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIR 373
Query: 1801 ETDVCQR---------------------------QCLCQPRVTGQTCNQPLQAHY 1828
+ ++C+ QC C+ V G+ C+ + Y
Sbjct: 374 DPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFY 428
Score = 50.8 bits (121), Expect = 4e-06
Identities = 22/122 (18%), Positives = 36/122 (29%), Gaps = 19/122 (15%)
Query: 351 YPRCTSCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYP----------NCE 400
Y + C G C CR +C C Y P C+
Sbjct: 257 YGHASECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACK 316
Query: 401 PCKCHMNGTLDFY--------CEPASGQQCPCKENYAGDHCDTCAQGYYNFPTCSQITLP 452
C C+ + + + + G C+ N G +C+ C Y+ I P
Sbjct: 317 KCNCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQ-HPERDIRDP 375
Query: 453 DV 454
++
Sbjct: 376 NL 377
Score = 40.8 bits (95), Expect = 0.005
Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 8/91 (8%)
Query: 1703 HMNGTLNFYCEPTSGQQCPCKENYAGDHCDTCAQACNCHGHADKCVYDPMVDEKRLSVDI 1762
+ ++ Y + C C+GHA +C V+E+ +
Sbjct: 219 KFVKLHTLGDNLLDSRMEIREKYYYAVYDMVVRGNCFCYGHASECAPVDGVNEEVEGM-- 276
Query: 1763 QGNYEGGGVCQECRDNTEGINCHQCVAGYYR 1793
G C CR NT+G+NC C+ Y+
Sbjct: 277 -----VHGHCM-CRHNTKGLNCELCMDFYHD 301
Score = 38.5 bits (89), Expect = 0.020
Identities = 22/109 (20%), Positives = 36/109 (33%), Gaps = 23/109 (21%)
Query: 89 RCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSCEP 148
C CN + +P D C C+ G C+ C P + SN C P
Sbjct: 440 SCACNPLGTIPGG-NPCDSETGYCYCKRLVTGQRCDQCLPQH------WGLSNDLDGCRP 492
Query: 149 CNCHGHADKCVYDPMVDEKRLSVDIQGNYEGGGVCQECRDNTEGINCHQ 197
C+C +++ + + G C C + G C++
Sbjct: 493 CDCDLGG--------------ALNNSCSEDSG-QCS-CLPHMIGRQCNE 525
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion,
basement membrane; HET: NAG; 2.90A {Mus musculus}
Length = 403
Score = 179 bits (455), Expect = 5e-49
Identities = 105/207 (50%), Positives = 140/207 (67%)
Query: 15 SADNGITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTT 74
+ I +SL++ RP NF S L+++T+ATN+RLR LRT LLGHLM A +DPT T
Sbjct: 191 LENGEIVVSLVNGRPGALNFSYSPLLRDFTKATNIRLRFLRTNTLLGHLMGKALRDPTVT 250
Query: 75 RRYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKA 134
RRY+YSIKDISIGGRC C+GHADVCD DP DP+ C CQHNTCG +C+ CCPG+ Q+
Sbjct: 251 RRYYYSIKDISIGGRCVCHGHADVCDAKDPLDPFRLQCACQHNTCGGSCDRCCPGFNQQP 310
Query: 135 WRQSQSNKPFSCEPCNCHGHADKCVYDPMVDEKRLSVDIQGNYEGGGVCQECRDNTEGIN 194
W+ + ++ C+ CNCHGHA C YDP VD + S + Y+GGGVC +C+ +T GIN
Sbjct: 311 WKPATTDSANECQSCNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVCLDCQHHTTGIN 370
Query: 195 CHQRVAGYYRPYGKHLNETDVCQPCQC 221
C + + G++R + L+ VC+P
Sbjct: 371 CERCLPGFFRAPDQPLDSPHVCRPAAA 397
Score = 81.8 bits (201), Expect = 4e-16
Identities = 47/185 (25%), Positives = 69/185 (37%), Gaps = 38/185 (20%)
Query: 1648 DCQHNTLGDQCEQCQPGYHGNATQGTMADCLICACPLPITSNNFASGCDVSEDGCHMNGT 1707
+ +G + ++ C C + A CD +
Sbjct: 234 TLLGHLMGKALRDPTVTRRYYYSIKDISIGGRCVC------HGHADVCDAKDPLDP---- 283
Query: 1708 LNFYCEPTSGQQCPCKENYAGDHCDTCA-------------------QACNCHGHADKCV 1748
QC C+ N G CD C Q+CNCHGHA C
Sbjct: 284 --------FRLQCACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCY 335
Query: 1749 YDPMVDEKRLSVDIQGNYEGGGVCQECRDNTEGINCHQCVAGYYRPYGKHLNETDVCQRQ 1808
YDP VD + S + Y+GGGVC +C+ +T GINC +C+ G++R + L+ VC+
Sbjct: 336 YDPEVDRREASQNQDNVYQGGGVCLDCQHHTTGINCERCLPGFFRAPDQPLDSPHVCRP- 394
Query: 1809 CLCQP 1813
Sbjct: 395 AAAHH 399
Score = 68.0 bits (165), Expect = 1e-11
Identities = 29/178 (16%), Positives = 48/178 (26%), Gaps = 25/178 (14%)
Query: 272 LDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFPTCSPCECN---AVGSLSDLCEVDSG 328
L F K + C C+ V D +
Sbjct: 227 LRFLRTNTLLGHLMGKALRDPTVTRRYYYSIKDISIGGRCVCHGHADVCDAKDPLDPFRL 286
Query: 329 NCTCRNNFAGRTCDSCADGYYNYP-RCTSCQCAFHYATGNCAEGTGKCECRPEYTKPDCN 387
C C++N G +CD C G+ P + + A + NC C PE + + +
Sbjct: 287 QCACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEVDRREAS 346
Query: 388 SCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFPT 445
G C+ + G +C+ C G++ P
Sbjct: 347 QNQDN---------------------VYQGGGVCLDCQHHTTGINCERCLPGFFRAPD 383
Score = 66.4 bits (161), Expect = 4e-11
Identities = 26/178 (14%), Positives = 50/178 (28%), Gaps = 20/178 (11%)
Query: 1308 FDGSCSCKENIVGRTCDHCVEGHWSFP------YCVPCECDLRGT---TIDICNQGTAEC 1358
F + + +++G+ + C C D + +C
Sbjct: 229 FLRTNTLLGHLMGKALRDPTVTRRYYYSIKDISIGGRCVCHGHADVCDAKDPLDPFRLQC 288
Query: 1359 YCKKNVYGAACDVCKEGTFDIQADNVDGCTRCFCFGKTTKCSSSNLYRSQLVYCKPCECS 1418
C+ N G +CD C G + C + + Y V + +
Sbjct: 289 ACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEVDRREASQN 348
Query: 1419 GNINRTDPGSCDSVTGECTGCLFNSAGDSCQYCAPGYYGNAV----SLKNCVKCNCNP 1472
+ G C C ++ G +C+ C PG++ S C +
Sbjct: 349 Q-------DNVYQGGGVCLDCQHHTTGINCERCLPGFFRAPDQPLDSPHVCRPAAAHH 399
Score = 65.7 bits (159), Expect = 6e-11
Identities = 34/182 (18%), Positives = 47/182 (25%), Gaps = 32/182 (17%)
Query: 237 CECRPEYTKPDCNSCAFGYFGYPN---CEPCKC--HMNGTLDFYCEPASGQQCPCKENYA 291
D Y+ + C C H + QC C+ N
Sbjct: 236 LGHLMGKALRDPTVTRRYYYSIKDISIGGRCVCHGHADVCDAKDPLDPFRLQCACQHNTC 295
Query: 292 GDHCDTCAQGYYNFPTCSPCECNAVGSLSDLCEVDSGNCTCRNNFAGRTCDSCADGYYNY 351
G CD C G+ P +A S C + +C R D Y
Sbjct: 296 GGSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEVDRREASQNQDNVYQ- 354
Query: 352 PRCTSCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPN--------CEPCK 403
G C +C+ T +C C G+F P+ C P
Sbjct: 355 ------------GGGVC------LDCQHHTTGINCERCLPGFFRAPDQPLDSPHVCRPAA 396
Query: 404 CH 405
H
Sbjct: 397 AH 398
Score = 60.3 bits (145), Expect = 3e-09
Identities = 32/164 (19%), Positives = 49/164 (29%), Gaps = 42/164 (25%)
Query: 619 CPCLVNFGGKTCSQCSPGFYQYP---QCKACNCDSHGNIGVSCDD----DGKCQCEKNFG 671
L+ + + +Y C C H ++ + D +C C+ N
Sbjct: 236 LGHLMGKALRDPTVTRRYYYSIKDISIGGRCVCHGHADVCDAKDPLDPFRLQCACQHNTC 295
Query: 672 GDRCERCKEGLYNFP----------ICEACNCDSH----------------GNIGVSCDD 705
G C+RC G P C++CNC H N
Sbjct: 296 GGSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEVDRREASQNQDNVYQG 355
Query: 706 DGKCQ-CEKNFGGDRCERCKEGLYNFP--------ICEECNCNP 740
G C C+ + G CERC G + P +C +
Sbjct: 356 GGVCLDCQHHTTGINCERCLPGFFRAPDQPLDSPHVCRPAAAHH 399
Score = 59.5 bits (143), Expect = 6e-09
Identities = 24/117 (20%), Positives = 38/117 (32%), Gaps = 26/117 (22%)
Query: 1648 DCQHNTLGDQCEQCQPGYHGN----ATQGTMADCLICACPLPITSNNFASGCDVSEDGCH 1703
CQHNT G C++C PG++ AT + +C C C + D E +
Sbjct: 289 ACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEVDRREASQN 348
Query: 1704 MNGTLNFYCEPTSGQQCPCKENYAGDHCDTCA-----------------QACNCHGH 1743
+ G C+ + G +C+ C + H H
Sbjct: 349 QDN-----VYQGGGVCLDCQHHTTGINCERCLPGFFRAPDQPLDSPHVCRPAAAHHH 400
Score = 59.1 bits (142), Expect = 7e-09
Identities = 27/155 (17%), Positives = 38/155 (24%), Gaps = 29/155 (18%)
Query: 555 CNCDIRGTEAGI---CDKTNGSCLCKEGYTGARCDQCKAGYYGYPDCKLCGCSAVGSSST 611
C C D C C+ G CD+C G+ P
Sbjct: 266 CVCHGHADVCDAKDPLDPFRLQCACQHNTCGGSCDRCCPGFNQQP-------------WK 312
Query: 612 ACDVSGKCPCLVNFGGKTCSQCSPGFYQYPQCKACNCDSHGNIGVSCDDDGKCQCEKNFG 671
C C + + N D+ G C C+ +
Sbjct: 313 PATTDSANECQSCNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVC-----LDCQHHTT 367
Query: 672 GDRCERCKEGLYNFP--------ICEACNCDSHGN 698
G CERC G + P +C H +
Sbjct: 368 GINCERCLPGFFRAPDQPLDSPHVCRPAAAHHHHH 402
Score = 57.6 bits (138), Expect = 2e-08
Identities = 23/140 (16%), Positives = 39/140 (27%), Gaps = 21/140 (15%)
Query: 1407 SQLVYCKPCECSGNINRTDPGSCDSVTGECTGCLFNSAGDSCQYCAPGYYGNAV------ 1460
+ C C G+ + D C N+ G SC C PG+
Sbjct: 258 KDISIGGRCVCHGHADVCDAKDPLDPFRLQCACQHNTCGGSCDRCCPGFNQQPWKPATTD 317
Query: 1461 ---------SLKNCVKCNCNPEGVLKTFAGCGSLP---AGELCECKPKVQGRICDECRPL 1508
+ C +PE + + G +C+ G C+ C P
Sbjct: 318 SANECQSCNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVCLDCQHHTTGINCERCLPG 377
Query: 1509 YW---NLKASNPDGCEDCDC 1525
++ + +P C
Sbjct: 378 FFRAPDQPLDSPHVCRPAAA 397
Score = 56.0 bits (134), Expect = 7e-08
Identities = 27/175 (15%), Positives = 49/175 (28%), Gaps = 29/175 (16%)
Query: 648 CDSHGNIGVSCDDDGKCQCEKNFGGDRCERCKEGLYNFPICEACNCDSHGNIGVSCDD-- 705
+ + G + R + + I C C H ++ + D
Sbjct: 223 TNIRLRFLRTNTLLGHLMGKALRDPTVTRRYYYSIKDISIGGRCVCHGHADVCDAKDPLD 282
Query: 706 --DGKCQCEKNFGGDRCERCKEGLYNFPI-------------------CEECNCNPEGVL 744
+C C+ N G C+RC G P +C +PE
Sbjct: 283 PFRLQCACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEVDR 342
Query: 745 KTFAGCGSLP---AGELCECKPKVQGRICDECRPLYW---NLKASNPDGCEDCDC 793
+ + G +C+ G C+ C P ++ + +P C
Sbjct: 343 REASQNQDNVYQGGGVCLDCQHHTTGINCERCLPGFFRAPDQPLDSPHVCRPAAA 397
Score = 53.7 bits (128), Expect = 3e-07
Identities = 28/186 (15%), Positives = 45/186 (24%), Gaps = 33/186 (17%)
Query: 1168 CGKNHFYLDNSTSEFCKKATFSMTISFLHEALPCQCD---IDGSKSFECEQFGGQCQCKP 1224
+ ++ +S I + C C + F QC C+
Sbjct: 235 LLGHLMGKALRDPTVTRRYYYS--IKDISIGGRCVCHGHADVCDAKDPLDPFRLQCACQH 292
Query: 1225 NVIGRRCEMCATGYYGFPDCHPCNCPFTAVCDSYTGECICAARVIGKKCDQCEPNTFGYD 1284
N G C+ C G+ P+ EC +P
Sbjct: 293 NTCGGSCDRCCPGFNQQ--------PWKPATTDSANECQSCNCHGHAYDCYYDPEVD--- 341
Query: 1285 PIIGCEECNCHPHGVNGTQQCDLFDGSCSCKENIVGRTCDHCVEGHWSFP--------YC 1336
E + G C C+ + G C+ C+ G + P C
Sbjct: 342 ---RREASQNQDNVYQGGGVC------LDCQHHTTGINCERCLPGFFRAPDQPLDSPHVC 392
Query: 1337 VPCECD 1342
P
Sbjct: 393 RPAAAH 398
Score = 46.0 bits (108), Expect = 8e-05
Identities = 29/166 (17%), Positives = 42/166 (25%), Gaps = 24/166 (14%)
Query: 1436 CTGCLFNSAGDSCQYCAPGYYGNAVSLKNCVKCNCNPEGVLKTFAGCGSLPAGELCECKP 1495
G L A YY + +C C+ A P C C+
Sbjct: 235 LLGHLMGKALRDPTVTRRYYYSIK-DISIGGRCVCHG-HADVCDAKDPLDPFRLQCACQH 292
Query: 1496 KVQGRICDECRPLYWNLKASNPDGCEDCDCYTLGTIGGIKNCN----------------- 1538
G CD C P + +C + G +C
Sbjct: 293 NTCGGSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEVDRREASQNQDNV 352
Query: 1539 -PKSGQCV-CKATAMNRKCDACVDGTYALQDNNL---FGCTECACD 1579
G C+ C+ C+ C+ G + D L C A
Sbjct: 353 YQGGGVCLDCQHHTTGINCERCLPGFFRAPDQPLDSPHVCRPAAAH 398
Score = 44.5 bits (104), Expect = 3e-04
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 112 CRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSCEPCNCHGH 154
CQH+T G NCE C PG+ + + S C P H H
Sbjct: 360 LDCQHHTTGINCERCLPGFFRAPDQPLDSPHV--CRPAAAHHH 400
Score = 44.1 bits (103), Expect = 3e-04
Identities = 27/177 (15%), Positives = 43/177 (24%), Gaps = 23/177 (12%)
Query: 693 CDSHGNIGVSCDDDGKCQCEKNFGGDRCERCKEGLYNFPICEECNCNPEGVLKTFAGCGS 752
+ + G + R + + I C C+ A
Sbjct: 223 TNIRLRFLRTNTLLGHLMGKALRDPTVTRRYYYSIKDISIGGRCVCHG-HADVCDAKDPL 281
Query: 753 LPAGELCECKPKVQGRICDECRPLYWNLKASNPDGCEDCDCYTLGTIGGIKNCN------ 806
P C C+ G CD C P + +C + G +C
Sbjct: 282 DPFRLQCACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEVD 341
Query: 807 ------------PKSGQCV-CKATAMNRKCDACMDGTYALQDNNL---FGCTECACD 847
G C+ C+ C+ C+ G + D L C A
Sbjct: 342 RREASQNQDNVYQGGGVCLDCQHHTTGINCERCLPGFFRAPDQPLDSPHVCRPAAAH 398
Score = 39.9 bits (92), Expect = 0.008
Identities = 28/185 (15%), Positives = 49/185 (26%), Gaps = 36/185 (19%)
Query: 1502 CDECRPLYWNLKASNPDGCEDCDCYTLGTIGGIKN-CNPKSGQCVCKATAMNRKCDACVD 1560
R Y+++ + C C+ + K+ +P QC C+ CD C
Sbjct: 247 PTVTRRYYYSI--KDISIGGRCVCHGHADVCDAKDPLDPFRLQCACQHNTCGGSCDRCCP 304
Query: 1561 GTYALQDNNLFGCTECACDIGGSINNLCNKSLIWMSSFRMVSFTKLSSQSNIVLPGLVVE 1620
G + C + + P +
Sbjct: 305 GFNQQPWKPATTDSANECQSCNCHGH---------------------AYDCYYDPEVDRR 343
Query: 1621 QFLNLCPTEFDMDVLIQNGQFYEAQLPDCQHNTLGDQCEQCQPGYHGNATQGTMA--DCL 1678
+ + + + CQH+T G CE+C PG+ Q + C
Sbjct: 344 EASQNQDNVYQGGGVCLD----------CQHHTTGINCERCLPGFFRAPDQPLDSPHVCR 393
Query: 1679 ICACP 1683
A
Sbjct: 394 PAAAH 398
Score = 39.1 bits (90), Expect = 0.013
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 8/60 (13%)
Query: 553 QVCNCDIRGTEAGICDKTNGSCLCKEGYTGARCDQCKAGYYGYPD--------CKLCGCS 604
+V + + + C+ TG C++C G++ PD C+
Sbjct: 339 EVDRREASQNQDNVYQGGGVCLDCQHHTTGINCERCLPGFFRAPDQPLDSPHVCRPAAAH 398
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus
musculus}
Length = 375
Score = 143 bits (361), Expect = 8e-37
Identities = 68/205 (33%), Positives = 102/205 (49%), Gaps = 21/205 (10%)
Query: 17 DNGITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRR 76
+ S L+ RPS NF NS LQEW AT++R+ L R + +P +
Sbjct: 186 GGNVAFSTLEGRPSAYNFDNSPVLQEWVTATDIRVTLNRLNTFGDEVF----NEPKVLKS 241
Query: 77 YFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWR 136
Y+Y+I D ++GGRC+CNGHA C + +C C+HNT G +CE C P + + WR
Sbjct: 242 YYYAISDFAVGGRCKCNGHASECV---KNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWR 298
Query: 137 QSQSNKPFSCEPCNCHGHADKCVYDPMVDEKRLSVDIQGNYEGGGVCQECRDNTEGINCH 196
++ + C PC+C+G + +C +DP + + GG C CRDNT+G C
Sbjct: 299 RATAESASECLPCDCNGRSQECYFDPELYR---------STGHGGHCTNCRDNTDGAKCE 349
Query: 197 QRVAGYYRPYGKHLNETDVCQPCQC 221
+ ++R L T+ C P
Sbjct: 350 RCRENFFR-----LGNTEACSPAAA 369
Score = 74.4 bits (182), Expect = 9e-14
Identities = 31/151 (20%), Positives = 44/151 (29%), Gaps = 24/151 (15%)
Query: 282 QQCPCKENYAGDHCDTCAQGYY---NFPTCSPCECNAVGSLSDLCEVDSGNCTCRNNFAG 338
+ + + YY +F C+CN S E D C C++N G
Sbjct: 223 NRLNTFGDEVFNEPKVLKSYYYAISDFAVGGRCKCNGHASECVKNEFDKLMCNCKHNTYG 282
Query: 339 RTCDSCADGYYNYP----------RCTSC-------QCAFHYATGNCAEGTGKC-ECRPE 380
C+ C + + P C C +C F G C CR
Sbjct: 283 VDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTGHGGHCTNCRDN 342
Query: 381 YTKPDCNSCAFGYFGYPN---CEPCKCHMNG 408
C C +F N C P H +
Sbjct: 343 TDGAKCERCRENFFRLGNTEACSPAAAHHHH 373
Score = 73.7 bits (180), Expect = 1e-13
Identities = 29/120 (24%), Positives = 40/120 (33%), Gaps = 21/120 (17%)
Query: 1200 PCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFP----------DCHPCNC 1249
C+C+ S+ + E C CK N G CE C + P +C PC+C
Sbjct: 254 RCKCNGHASECVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDC 313
Query: 1250 PFTA----------VCDSYTGECI-CAARVIGKKCDQCEPNTFGYDPIIGCEECNCHPHG 1298
+ + G C C G KC++C N F C H H
Sbjct: 314 NGRSQECYFDPELYRSTGHGGHCTNCRDNTDGAKCERCRENFFRLGNTEACSPAAAHHHH 373
Score = 72.9 bits (178), Expect = 2e-13
Identities = 40/236 (16%), Positives = 64/236 (27%), Gaps = 31/236 (13%)
Query: 103 DPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSCEPCNCHGHADKCVYDP 162
E+ Y + R T G + C + N FS A P
Sbjct: 150 SCENTYSKANRGFIRTGGDEQQALCTDEFSDISPLTGGNVAFST--LEGRPSAYNFDNSP 207
Query: 163 MVDEKRLSVDIQGNYEGGGVCQECRDNTEGINCHQRVAGYYRPYGKHLNETDVCQPCQCA 222
++ E + DI+ + N + YY + V C+C
Sbjct: 208 VLQEWVTATDIRVTLNRLNTFGDEVFN----EPKVLKSYYYAIS-----DFAVGGRCKCN 258
Query: 223 FH-YATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYP----------NCEPCKCHMNGT 271
H C C+ DC C + P C PC C+
Sbjct: 259 GHASECVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQ 318
Query: 272 LDFYCEPA------SGQQCPCKENYAGDHCDTCAQGYYNFP---TCSPCECNAVGS 318
++ G C++N G C+ C + ++ CSP +
Sbjct: 319 ECYFDPELYRSTGHGGHCTNCRDNTDGAKCERCRENFFRLGNTEACSPAAAHHHHH 374
Score = 71.3 bits (174), Expect = 7e-13
Identities = 29/151 (19%), Positives = 46/151 (30%), Gaps = 25/151 (16%)
Query: 617 GKCPCLVNFGGKTCSQCSPGFY---QYPQCKACNCDSHGNIGVSCDDDGK-CQCEKNFGG 672
+ + +Y + C C+ H + V + D C C+ N G
Sbjct: 223 NRLNTFGDEVFNEPKVLKSYYYAISDFAVGGRCKCNGHASECVKNEFDKLMCNCKHNTYG 282
Query: 673 DRCERCKEGLYNFPI----------CEACNCDSHGN-------IGVSCDDDGKCQ-CEKN 714
CE+C + P C C+C+ + S G C C N
Sbjct: 283 VDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTGHGGHCTNCRDN 342
Query: 715 FGGDRCERCKEGLYNFP---ICEECNCNPEG 742
G +CERC+E + C +
Sbjct: 343 TDGAKCERCRENFFRLGNTEACSPAAAHHHH 373
Score = 70.2 bits (171), Expect = 2e-12
Identities = 28/148 (18%), Positives = 47/148 (31%), Gaps = 24/148 (16%)
Query: 235 GKCECRPEYTKPDCNSCAFGYFGYPN---CEPCKCHMNGTLDFYCEPASGQQCPCKENYA 291
+ + + Y+ + CKC+ + + E C CK N
Sbjct: 223 NRLNTFGDEVFNEPKVLKSYYYAISDFAVGGRCKCNGHASECVKNEF-DKLMCNCKHNTY 281
Query: 292 GDHCDTCAQGYYNFP----------TCSPCECNAVGS------LSDLCEVDSGNCT-CRN 334
G C+ C + + P C PC+CN G+CT CR+
Sbjct: 282 GVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTGHGGHCTNCRD 341
Query: 335 NFAGRTCDSCADGYYNYP---RCTSCQC 359
N G C+ C + ++ C+
Sbjct: 342 NTDGAKCERCRENFFRLGNTEACSPAAA 369
Score = 69.8 bits (170), Expect = 2e-12
Identities = 36/188 (19%), Positives = 57/188 (30%), Gaps = 58/188 (30%)
Query: 1645 QLPDCQHNTLGDQCEQCQPGYHGNATQGTMADCLICACPLPITSNNFASGCDVSEDGCHM 1704
+ + + ++ + + Y+ A C C N AS C
Sbjct: 223 NRLNTFGDEVFNEPKVLKSYYYAI---SDFAVGGRCKC------NGHASECV-------- 265
Query: 1705 NGTLNFYCEPTSGQQCPCKENYAGDHCDTCA-------------------QACNCHGHAD 1745
C CK N G C+ C C+C+G +
Sbjct: 266 -------KNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQ 318
Query: 1746 KCVYDPMVDEKRLSVDIQGNYEGGGVCQECRDNTEGINCHQCVAGYYRPYGKHLNETDVC 1805
+C +DP + + GG C CRDNT+G C +C ++R L T+ C
Sbjct: 319 ECYFDPELYR---------STGHGGHCTNCRDNTDGAKCERCRENFFR-----LGNTEAC 364
Query: 1806 QRQCLCQP 1813
Sbjct: 365 SP-AAAHH 371
Score = 69.0 bits (168), Expect = 5e-12
Identities = 32/151 (21%), Positives = 43/151 (28%), Gaps = 25/151 (16%)
Query: 572 GSCLCKEGYTGARCDQCKAGYYGYPD---CKLCGCSAVGSSSTACDVSGK-CPCLVNFGG 627
K+ YY D C C+ S + C C N G
Sbjct: 223 NRLNTFGDEVFNEPKVLKSYYYAISDFAVGGRCKCNGHASECVKNEFDKLMCNCKHNTYG 282
Query: 628 KTCSQCSPGFYQYP----------QCKACNCDSHGN-------IGVSCDDDGKCQ-CEKN 669
C +C P F P +C C+C+ + S G C C N
Sbjct: 283 VDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTGHGGHCTNCRDN 342
Query: 670 FGGDRCERCKEGLYNFP---ICEACNCDSHG 697
G +CERC+E + C H
Sbjct: 343 TDGAKCERCRENFFRLGNTEACSPAAAHHHH 373
Score = 67.1 bits (163), Expect = 2e-11
Identities = 32/200 (16%), Positives = 58/200 (29%), Gaps = 21/200 (10%)
Query: 1213 CEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNCPFTAV-CDSYTGECICAARVIGK 1271
++F + Y F + TA +
Sbjct: 175 TDEFSDISPLTGGNVAFSTLEGRPSAYNFDNSPVLQEWVTATDIRVTLNRLNTFGDEVFN 234
Query: 1272 KCDQCEPNTFGYDPIIGCEECNCHPHGVNGTQQCDLFDGSCSCKENIVGRTCDHCVEGHW 1331
+ + + C C+ H + + + C+CK N G C+ C+
Sbjct: 235 EPKVLKSYYYAISDFAVGGRCKCNGHA-SECVKNEFDKLMCNCKHNTYGVDCEKCLPFFN 293
Query: 1332 SFPY----------CVPCECDLRGT------TIDICNQGTAECY-CKKNVYGAACDVCKE 1374
P+ C+PC+C+ R + C C+ N GA C+ C+E
Sbjct: 294 DRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTGHGGHCTNCRDNTDGAKCERCRE 353
Query: 1375 GTFDIQADNVDGCTRCFCFG 1394
F + N + C+
Sbjct: 354 NFF--RLGNTEACSPAAAHH 371
Score = 67.1 bits (163), Expect = 2e-11
Identities = 28/173 (16%), Positives = 50/173 (28%), Gaps = 30/173 (17%)
Query: 1310 GSCSCKENIVGRTCDHCVEGHWS---FPYCVPCECDLRGTTIDICNQGTAECYCKKNVYG 1366
+ + V +++ F C+C+ + C CK N YG
Sbjct: 223 NRLNTFGDEVFNEPKVLKSYYYAISDFAVGGRCKCNGHASECVKNEFDKLMCNCKHNTYG 282
Query: 1367 AACDVCKEGTFD-----IQADNVDGCTRCFCFGKTTKCSSSNLYRSQLVYCKPCECSGNI 1421
C+ C D A++ C C C G++ +C
Sbjct: 283 VDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDP------------------ 324
Query: 1422 NRTDPGSCDSVTGECTGCLFNSAGDSCQYCAPGYYGNAVSLKNCVKCNCNPEG 1474
+ G CT C N+ G C+ C ++ + + C +
Sbjct: 325 ---ELYRSTGHGGHCTNCRDNTDGAKCERCRENFFRLG-NTEACSPAAAHHHH 373
Score = 62.5 bits (151), Expect = 5e-10
Identities = 25/112 (22%), Positives = 36/112 (32%), Gaps = 30/112 (26%)
Query: 1648 DCQHNTLGDQCEQCQPGYHGN----ATQGTMADCLICACPLPITSNNFASGCDVSEDGCH 1703
+C+HNT G CE+C P ++ AT + ++CL C C F S
Sbjct: 275 NCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTGH-- 332
Query: 1704 MNGTLNFYCEPTSGQQCPCKENYAGDHCDTCA------------QACNCHGH 1743
G C++N G C+ C H H
Sbjct: 333 ------------GGHCTNCRDNTDGAKCERCRENFFRLGNTEACSPAAAHHH 372
Score = 60.6 bits (146), Expect = 2e-09
Identities = 22/142 (15%), Positives = 35/142 (24%), Gaps = 20/142 (14%)
Query: 323 CEVDSGNCTCRNNFAGRTCDSCADGYYNYPR---CTSCQCAFH-YATGNCAEGTGKCECR 378
V + YY C+C H C C+
Sbjct: 218 IRVTLNRLNTFGDEVFNEPKVLKSYYYAISDFAVGGRCKCNGHASECVKNEFDKLMCNCK 277
Query: 379 PEYTKPDCNSCAFGYFGYP----------NCEPCKCHMNGTLDFYCEPA------SGQQC 422
DC C + P C PC C+ ++ G
Sbjct: 278 HNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTGHGGHCT 337
Query: 423 PCKENYAGDHCDTCAQGYYNFP 444
C++N G C+ C + ++
Sbjct: 338 NCRDNTDGAKCERCRENFFRLG 359
Score = 51.7 bits (123), Expect = 1e-06
Identities = 28/163 (17%), Positives = 47/163 (28%), Gaps = 19/163 (11%)
Query: 1432 VTGECTGCLFNSAGDSCQYCAPGYYGNAVSLKNCVKCNCNPEGVLKTFAGCGSLPAGEL- 1490
VT + + + YY + +C CN + C +L
Sbjct: 220 VTLNRLNTFGDEVFNEPKVLKSYYYAIS-DFAVGGRCKCNGHA-----SECVKNEFDKLM 273
Query: 1491 CECKPKVQGRICDECRPLYWNLKASNPDGCEDCDCYTLGTIGGIKNCNP---------KS 1541
C CK G C++C P + + +C G + C
Sbjct: 274 CNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTGHG 333
Query: 1542 GQCV-CKATAMNRKCDACVDGTYALQDNNLFGCTECACDIGGS 1583
G C C+ KC+ C + + + N C+ A
Sbjct: 334 GHCTNCRDNTDGAKCERCRENFF--RLGNTEACSPAAAHHHHH 374
Score = 50.2 bits (119), Expect = 4e-06
Identities = 25/137 (18%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 726 GLYNFPICEECNCNPEGVLKTFAGCGSLPAGEL-CECKPKVQGRICDECRPLYWNLKASN 784
+ +F + C CN + C +L C CK G C++C P + +
Sbjct: 245 AISDFAVGGRCKCNGHA-----SECVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRR 299
Query: 785 PDGCEDCDCYTLGTIGGIKNCNP---------KSGQCV-CKATAMNRKCDACMDGTYALQ 834
+C G + C G C C+ KC+ C + + +
Sbjct: 300 ATAESASECLPCDCNGRSQECYFDPELYRSTGHGGHCTNCRDNTDGAKCERCRENFF--R 357
Query: 835 DNNLFGCTECACDIGGS 851
N C+ A
Sbjct: 358 LGNTEACSPAAAHHHHH 374
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2
g.3.11.2 PDB: 1npe_B 1tle_A
Length = 162
Score = 104 bits (260), Expect = 1e-25
Identities = 51/177 (28%), Positives = 68/177 (38%), Gaps = 29/177 (16%)
Query: 149 CNCHGHADKCVYDPMVDEKRLSVDIQGNYEGGGVCQECRDNTEGINCHQRVAGYYRPYGK 208
C C G + + VC C T G C GY+
Sbjct: 1 CPCPGGSSCAIVPK---------------TKEVVCTHCPTGTAGKRCELCDDGYFGDPLG 45
Query: 209 HLNETDVCQPCQCAFH---YATGNCAEGTGKC-ECRPEYTKPDCNSCAFGYFGYP----- 259
+C+PCQC + A GNC TG+C +C C+ C G+FG P
Sbjct: 46 SNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNP 105
Query: 260 --NCEPCKCHMNGTL--DFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFPTCSPCE 312
C+ C C+ GT+ C P +G QC C + +G C TC GYYN + CE
Sbjct: 106 ADKCKACACNPYGTVQQQSSCNPVTG-QCQCLPHVSGRDCGTCDPGYYNLQSGQGCE 161
Score = 103 bits (258), Expect = 2e-25
Identities = 40/179 (22%), Positives = 63/179 (35%), Gaps = 21/179 (11%)
Query: 90 CRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSCEPC 149
C C G + + ++ C T G CE+C GY + C PC
Sbjct: 1 CPCPGGSSCAIVPKTKEVVC--THCPTGTAGKRCELCDDGYFGDPLGSNGP--VRLCRPC 56
Query: 150 NCHGHADKCVYDPMVDEKRLSVDIQGNYEGGGVCQECRDNTEGINCHQRVAGYYRPYGKH 209
C+ + D G C +C NT G C + G++
Sbjct: 57 QCNDNIDPNAVGN-------------CNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAP 103
Query: 210 LNETDVCQPCQCAFH---YATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCK 265
D C+ C C + +C TG+C+C P + DC +C GY+ + + C+
Sbjct: 104 NPA-DKCKACACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQSGQGCE 161
Score = 99.9 bits (249), Expect = 3e-24
Identities = 45/161 (27%), Positives = 62/161 (38%), Gaps = 21/161 (13%)
Query: 219 CQCAFH--YATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPN--------CEPCKCHM 268
C C A + C C C GYFG P C PC+C+
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCND 60
Query: 269 NGTLDFY--CEPASGQQCPCKENYAGDHCDTCAQGYYNFPT-------CSPCECNAVGSL 319
N + C +G+ C N AG +CD C +G++ P C C CN G++
Sbjct: 61 NIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTV 120
Query: 320 S--DLCEVDSGNCTCRNNFAGRTCDSCADGYYNYPRCTSCQ 358
C +G C C + +GR C +C GYYN C+
Sbjct: 121 QQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQSGQGCE 161
Score = 97.6 bits (243), Expect = 2e-23
Identities = 42/161 (26%), Positives = 64/161 (39%), Gaps = 21/161 (13%)
Query: 264 CKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFPT--------CSPCECN- 314
C C + + C AG C+ C GY+ P C PC+CN
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCND 60
Query: 315 -AVGSLSDLCEVDSGNC-TCRNNFAGRTCDSCADGYYNYP-------RCTSCQCAFH--- 362
+ C +G C C N AG CD C +G++ P +C +C C +
Sbjct: 61 NIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTV 120
Query: 363 YATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCK 403
+C TG+C+C P + DC +C GY+ + + C+
Sbjct: 121 QQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQSGQGCE 161
Score = 97.6 bits (243), Expect = 2e-23
Identities = 53/187 (28%), Positives = 80/187 (42%), Gaps = 30/187 (16%)
Query: 1339 CECDLRGTTIDICNQGTAEC-YCKKNVYGAACDVCKEGTFDIQADNVDGCTRCFCFGKTT 1397
C C + + C +C G C++C +G F
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFG------------------- 41
Query: 1398 KCSSSNLYRSQLVYCKPCECSGNINRTDPGSCDSVTGECTGCLFNSAGDSCQYCAPGYYG 1457
+ C+PC+C+ NI+ G+C+ +TGEC C++N+AG C C G++G
Sbjct: 42 ---DPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFG 98
Query: 1458 NAVS---LKNCVKCNCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDECRPLYWNLKA 1514
N ++ C C CNP G ++ + C P C+C P V GR C C P Y+NL
Sbjct: 99 NPLAPNPADKCKACACNPYGTVQQQSSC--NPVTGQCQCLPHVSGRDCGTCDPGYYNL-- 154
Query: 1515 SNPDGCE 1521
+ GCE
Sbjct: 155 QSGQGCE 161
Score = 97.2 bits (242), Expect = 3e-23
Identities = 48/161 (29%), Positives = 67/161 (41%), Gaps = 21/161 (13%)
Query: 1201 CQCDIDGSKSFECEQFGGQC-QCKPNVIGRRCEMCATGYYGFP--------DCHPCNCP- 1250
C C S + + C C G+RCE+C GY+G P C PC C
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCND 60
Query: 1251 -----FTAVCDSYTGECI-CAARVIGKKCDQCEPNTFGY----DPIIGCEECNCHPHGVN 1300
C+ TGEC+ C G CD+C+ FG +P C+ C C+P+G
Sbjct: 61 NIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTV 120
Query: 1301 GTQQ-CDLFDGSCSCKENIVGRTCDHCVEGHWSFPYCVPCE 1340
Q C+ G C C ++ GR C C G+++ CE
Sbjct: 121 QQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQSGQGCE 161
Score = 91.4 bits (227), Expect = 3e-21
Identities = 47/158 (29%), Positives = 65/158 (41%), Gaps = 9/158 (5%)
Query: 1415 CECSGNINRTDPGSCDSVTGECTGCLFNSAGDSCQYCAPGYYGNAV----SLKNCVKCNC 1470
C C G + + CT C +AG C+ C GY+G+ + ++ C C C
Sbjct: 1 CPCPGGSSCA--IVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQC 58
Query: 1471 NPEGVLKTFAGCGSLPAGELCECKPKVQGRICDECRPLYWN--LKASNPDGCEDCDCYTL 1528
N C L GE +C G CD C+ ++ L + D C+ C C
Sbjct: 59 NDNIDPNAVGNCNRL-TGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPY 117
Query: 1529 GTIGGIKNCNPKSGQCVCKATAMNRKCDACVDGTYALQ 1566
GT+ +CNP +GQC C R C C G Y LQ
Sbjct: 118 GTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQ 155
Score = 90.3 bits (224), Expect = 9e-21
Identities = 44/156 (28%), Positives = 58/156 (37%), Gaps = 13/156 (8%)
Query: 691 CNCDSHGNIGVSCDDDG--KCQCEKNFGGDRCERCKEGLYNFP--------ICEECNCNP 740
C C + + C G RCE C +G + P +C C CN
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCND 60
Query: 741 EGVLKTFAGCGSLPAGELCECKPKVQGRICDECRPLYWN--LKASNPDGCEDCDCYTLGT 798
C L GE +C G CD C+ ++ L + D C+ C C GT
Sbjct: 61 NIDPNAVGNCNRL-TGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGT 119
Query: 799 IGGIKNCNPKSGQCVCKATAMNRKCDACMDGTYALQ 834
+ +CNP +GQC C R C C G Y LQ
Sbjct: 120 VQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQ 155
Score = 85.2 bits (211), Expect = 5e-19
Identities = 49/165 (29%), Positives = 71/165 (43%), Gaps = 25/165 (15%)
Query: 646 CNCDSHGNIGVSCDDDG--KCQCEKNFGGDRCERCKEGLYNFP--------ICEACNCDS 695
C C + + C G RCE C +G + P +C C C+
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCND 60
Query: 696 HGNIGV--SCDDD-GKC-QCEKNFGGDRCERCKEGLYNFPI-------CEECNCNPEGVL 744
+ + +C+ G+C +C N G C+RCKEG + P+ C+ C CNP G +
Sbjct: 61 NIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTV 120
Query: 745 KTFAGCGSLPAGELCECKPKVQGRICDECRPLYWNLKASNPDGCE 789
+ + C P C+C P V GR C C P Y+NL + GCE
Sbjct: 121 QQQSSC--NPVTGQCQCLPHVSGRDCGTCDPGYYNL--QSGQGCE 161
Score = 82.2 bits (203), Expect = 5e-18
Identities = 45/160 (28%), Positives = 68/160 (42%), Gaps = 23/160 (14%)
Query: 555 CNCDIRGTEAGICDKTNGSCL-CKEGYTGARCDQCKAGYYGYP--------DCKLCGCS- 604
C C + A + C C G G RC+ C GY+G P C+ C C+
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCND 60
Query: 605 -AVGSSSTACD-VSGKC-PCLVNFGGKTCSQCSPGFYQYP-------QCKACNCDSHGNI 654
++ C+ ++G+C C+ N G C +C GF+ P +CKAC C+ +G +
Sbjct: 61 NIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTV 120
Query: 655 GVSCDDD---GKCQCEKNFGGDRCERCKEGLYNFPICEAC 691
+ G+CQC + G C C G YN + C
Sbjct: 121 QQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQSGQGC 160
Score = 71.8 bits (176), Expect = 2e-14
Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 16/107 (14%)
Query: 1200 PCQCD--IDGSKSFECEQFGGQC-QCKPNVIGRRCEMCATGYYGFP-------DCHPCNC 1249
PCQC+ ID + C + G+C +C N G C+ C G++G P C C C
Sbjct: 55 PCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACAC 114
Query: 1250 ------PFTAVCDSYTGECICAARVIGKKCDQCEPNTFGYDPIIGCE 1290
+ C+ TG+C C V G+ C C+P + GCE
Sbjct: 115 NPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQSGQGCE 161
Score = 61.4 bits (149), Expect = 8e-11
Identities = 27/158 (17%), Positives = 40/158 (25%), Gaps = 51/158 (32%)
Query: 1702 CHMNGTLNFYCEPTSGQQCPCKENYAGDHCDTCA-----------------QACNCHGHA 1744
C + + C AG C+ C + C C+ +
Sbjct: 3 CPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNI 62
Query: 1745 DKCVYDPMVDEKRLSVDIQGNYEGGGVCQECRDNTEGINCHQCVAGYYRPYGKHLNETDV 1804
D G C +C NT G C +C G++ D
Sbjct: 63 DPNAVGN-------------CNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPA-DK 108
Query: 1805 CQR--------------------QCLCQPRVTGQTCNQ 1822
C+ QC C P V+G+ C
Sbjct: 109 CKACACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGT 146
Score = 58.7 bits (142), Expect = 7e-10
Identities = 36/154 (23%), Positives = 52/154 (33%), Gaps = 32/154 (20%)
Query: 1648 DCQHNTLGDQCEQCQPGYHGN--ATQGTMADCLICACPLPITSNNFASGCDVSEDGCHMN 1705
C T G +CE C GY G+ + G + C C C I N +
Sbjct: 22 HCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGN------------ 69
Query: 1706 GTLNFYCEPTSGQQCPCKENYAGDHCDTCAQACNCHGH-ADKCVYDPMVDEKRLSVDIQG 1764
C +G+ C N AG +CD C G + +P K + + G
Sbjct: 70 ------CNRLTGECLKCIYNTAGFYCDRCK-----EGFFGNPLAPNPADKCKACACNPYG 118
Query: 1765 NYEGGGVCQ------ECRDNTEGINCHQCVAGYY 1792
+ C +C + G +C C GYY
Sbjct: 119 TVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYY 152
Score = 58.7 bits (142), Expect = 8e-10
Identities = 27/101 (26%), Positives = 37/101 (36%), Gaps = 12/101 (11%)
Query: 357 CQCAFH--YATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPN--------CEPCKCHM 406
C C A + C C C GYFG P C PC+C+
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCND 60
Query: 407 NGTLDFY--CEPASGQQCPCKENYAGDHCDTCAQGYYNFPT 445
N + C +G+ C N AG +CD C +G++ P
Sbjct: 61 NIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPL 101
Score = 56.7 bits (137), Expect = 4e-09
Identities = 27/130 (20%), Positives = 41/130 (31%), Gaps = 9/130 (6%)
Query: 736 CNCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDECRPLYW---NLKASNPDGCEDCD 792
C C C G+ C+ C Y+ C C
Sbjct: 1 CPCPGGSSCAIVPKTKE---VVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQ 57
Query: 793 CYTLGTIGGIKNCNPKSGQCV-CKATAMNRKCDACMDGTY--ALQDNNLFGCTECACDIG 849
C + NCN +G+C+ C CD C +G + L N C CAC+
Sbjct: 58 CNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPY 117
Query: 850 GSINNLCNKD 859
G++ + +
Sbjct: 118 GTVQQQSSCN 127
Score = 55.6 bits (134), Expect = 9e-09
Identities = 27/128 (21%), Positives = 40/128 (31%), Gaps = 9/128 (7%)
Query: 1468 CNCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDECRPLYW---NLKASNPDGCEDCD 1524
C C C G+ C+ C Y+ C C
Sbjct: 1 CPCPGGSSCAIVPKTKE---VVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQ 57
Query: 1525 CYTLGTIGGIKNCNPKSGQCV-CKATAMNRKCDACVDGTY--ALQDNNLFGCTECACDIG 1581
C + NCN +G+C+ C CD C +G + L N C CAC+
Sbjct: 58 CNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPY 117
Query: 1582 GSINNLCN 1589
G++ +
Sbjct: 118 GTVQQQSS 125
Score = 54.8 bits (132), Expect = 2e-08
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 1199 LPCQCDIDGSKSFE--CEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPC 1247
C C+ G+ + C GQCQC P+V GR C C GYY C
Sbjct: 110 KACACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQSGQGC 160
Score = 49.4 bits (118), Expect = 1e-06
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 553 QVCNCDIRGT--EAGICDKTNGSCLCKEGYTGARCDQCKAGYYGYPDCKLC 601
+ C C+ GT + C+ G C C +G C C GYY + C
Sbjct: 110 KACACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQSGQGC 160
Score = 42.5 bits (100), Expect = 3e-04
Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 23/118 (19%)
Query: 89 RCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSCEP 148
C+CN + D + + +C +NT G C+ C G+ + ++K C+
Sbjct: 55 PCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADK---CKA 111
Query: 149 CNCHGH---ADKCVYDPMVDEKRLSVDIQGNYEGGGVCQECRDNTEGINCHQRVAGYY 203
C C+ + + +P+ G CQ C + G +C GYY
Sbjct: 112 CACNPYGTVQQQSSCNPV----------------TGQCQ-CLPHVSGRDCGTCDPGYY 152
Score = 41.3 bits (97), Expect = 7e-04
Identities = 15/74 (20%), Positives = 20/74 (27%), Gaps = 16/74 (21%)
Query: 1738 CNCHGHADKCVYDPMVDEKRLSVDIQGNYEGGGVCQECRDNTEGINCHQCVAGYYRPYGK 1797
C C G + + VC C T G C C GY+
Sbjct: 1 CPCPGGSSCAIVPK---------------TKEVVCTHCPTGTAGKRCELCDDGYFGDPLG 45
Query: 1798 HLNETDVCQRQCLC 1811
+C+ C C
Sbjct: 46 SNGPVRLCRP-CQC 58
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 109 bits (274), Expect = 3e-25
Identities = 50/246 (20%), Positives = 80/246 (32%), Gaps = 56/246 (22%)
Query: 9 VWALERSADNGITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMAD 68
+ ++ L + + +L+++ T++R+RLLR +
Sbjct: 222 HFEIKDRFAFFAGPRLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLR------PAVGEIF 275
Query: 69 QDPTTTRRYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCP 128
D RYFY+I DI + GRC+CN HA VC D C C+HNT G +C C
Sbjct: 276 VDELHLARYFYAISDIKVRGRCKCNLHATVCV----YDNSKLTCECEHNTTGPDCGKCKK 331
Query: 129 GYEQKAWR-----QSQSNKPFSCEPCNCHGHADKCVYDPMVDEKRLSVDIQGNYEGGGVC 183
Y+ + W +C P + C + + + GG C
Sbjct: 332 NYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCDNEL------------LHCQNGGTC 379
Query: 184 Q-----ECRDNTEGINCHQRVAGYYRPYGKHLNETDVCQPCQCAFHYATGNCAEGTGKCE 238
C GI C+ +C G+C +G+
Sbjct: 380 HNNVRCLCPAAYTGIL---------------------CEKLRC---EEAGSCGSDSGQGA 415
Query: 239 CRPEYT 244
Sbjct: 416 PPHGTH 421
Score = 69.9 bits (170), Expect = 3e-12
Identities = 23/205 (11%), Positives = 45/205 (21%), Gaps = 41/205 (20%)
Query: 566 ICDKTNGSCLCKEGYTGARCDQCKAGYYGYPDCKLCGCSAVGSSSTACDVSGKCPCLVNF 625
+ + + + + C C+ + + C C N
Sbjct: 262 LRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNT 321
Query: 626 GGKTCSQCSPGFYQYPQCKACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCERCKEGLYNF 685
G C +C + P + C + C
Sbjct: 322 TGPDCGKCKKNYQGRP-WSPGSYLPIPK-------GAANACIPSISSIGTNVC------- 366
Query: 686 PICEACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCERCKEGLYNFPICEECNCNPEGVLK 745
E +C + G C ++ +C C + G CE+ + C G
Sbjct: 367 -DNELLHCQNGGT----CHNNVRCLCPAAYTGILCEKLR-------------CEEAGSCG 408
Query: 746 TFAGCGSLPAGELCECKPKVQGRIC 770
+ +G
Sbjct: 409 SDSGQ--------GAPPHGTHHHHH 425
Score = 68.7 bits (167), Expect = 7e-12
Identities = 28/207 (13%), Positives = 47/207 (22%), Gaps = 23/207 (11%)
Query: 230 CAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKEN 289
E + + Y + K + + +
Sbjct: 216 TNSKIIHFEIKDRFAFFAGPRLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIF 275
Query: 290 YAGDHCDTCAQGYYNFPTCSPCECNAVGSLSDLCEVDSGNCTCRNNFAGRTCDSCADGYY 349
H + C+CN ++ + C C +N G C C Y
Sbjct: 276 VDELHLARYFYAISDIKVRGRCKCNLHATVCV-YDNSKLTCECEHNTTGPDCGKCKKNYQ 334
Query: 350 NYPRCTSCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGT 409
P + + C P + N C + E C GT
Sbjct: 335 GRP--------WSPGSYLPIPKGAANACIPSISSIGTNVC--------DNELLHCQNGGT 378
Query: 410 LDFYCEPASGQQCPCKENYAGDHCDTC 436
+ +C C Y G C+
Sbjct: 379 CH------NNVRCLCPAAYTGILCEKL 399
Score = 68.3 bits (166), Expect = 1e-11
Identities = 27/149 (18%), Positives = 38/149 (25%), Gaps = 26/149 (17%)
Query: 1191 TISFLHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFP-------- 1242
IS + C+C++ + + C+C+ N G C C Y G P
Sbjct: 287 AISDIKVRGRCKCNLHATVC-VYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLP 345
Query: 1243 -------DCHPCNCPFTA-VCDSYTGECICAARVIGKKCDQCEPNTFGYDPIIGCEECNC 1294
C P VCD+ C C G CE+ C
Sbjct: 346 IPKGAANACIPSISSIGTNVCDNELLHCQNGGTCHNNVRCLCPAAYTGIL----CEKLRC 401
Query: 1295 HPHGVNGTQQCDLFDGSCSCKENIVGRTC 1323
G C G +
Sbjct: 402 EEAG-----SCGSDSGQGAPPHGTHHHHH 425
Score = 63.7 bits (154), Expect = 2e-10
Identities = 37/211 (17%), Positives = 51/211 (24%), Gaps = 41/211 (19%)
Query: 223 FHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQ 282
F T + + CKC+++ T+ Y S
Sbjct: 256 FFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYDN--SKL 313
Query: 283 QCPCKENYAGDHCDTCAQGYYNFPTCSPCECNAVGSLSDLCEVDSGNCTCRNNFAGRTCD 342
C C+ N G C C + Y P SP C + + +
Sbjct: 314 TCECEHNTTGPDCGKCKKNYQGRP-WSPGSYL--------PIPKGAANACIPSISSIGTN 364
Query: 343 SCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPC 402
C CQ G C +C C Y G CE
Sbjct: 365 VC------DNELLHCQN-----GGTC-HNNVRCLCPA------------AYTG-ILCEKL 399
Query: 403 KCHMNGTLDFYCEPASGQQCPCKENYAGDHC 433
+C G+ C SG Q H
Sbjct: 400 RCEEAGS----CGSDSG-QGAPPHGTHHHHH 425
Score = 60.2 bits (145), Expect = 4e-09
Identities = 29/205 (14%), Positives = 46/205 (22%), Gaps = 49/205 (23%)
Query: 619 CPCLVNFGGKTCSQCSPGFYQYPQCKACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCERC 678
+ ++ C C+ H + V + C+CE N G C +C
Sbjct: 270 AVGEIFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKC 329
Query: 679 KEGLYNFPICEACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCERCKEGLYNFPICEECNC 738
K+ P + C + C E +C
Sbjct: 330 KKNYQGRP-WSPGSYLPIPK-------GAANACIPSISSIGTNVC--------DNELLHC 373
Query: 739 NPEGVLKTFAGCGSLPAGELCECKPKVQGRICDECRPLYWNLKASNPDGCEDCDCYTLGT 798
G C C G +C++ R C G+
Sbjct: 374 QNGGTCHN---------NVRCLCPAAYTGILCEKLR------------------CEEAGS 406
Query: 799 IGGIKNCNPKSGQCVCKATAMNRKC 823
C SGQ +
Sbjct: 407 ------CGSDSGQGAPPHGTHHHHH 425
Score = 58.3 bits (140), Expect = 2e-08
Identities = 52/343 (15%), Positives = 78/343 (22%), Gaps = 70/343 (20%)
Query: 1 MGNSPRPAVWALERSADNGITISLLDHRPS--MKNFFNSTRLQEWTRATNVRLRLLRTKN 58
S RP LE+S D G T + + + F + + V + +
Sbjct: 151 TFESGRPDQMILEKSLDYGRTWQPYQYYATDCLDAFHMDPKSVKDLSQHTVLEIICTEEY 210
Query: 59 LLGHLMSMADQDPTTTRRYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNT 118
G+ + R+ + + D R
Sbjct: 211 STGYTTNSKIIHFEIKDRFAFFAGPRLRNMASLYGQLDTTKKLRDFFTVTDLRIRLL--- 267
Query: 119 CGHNCEVCCPGYEQKAWRQSQSNKPFSCEPCNCHGHADKCVYDPMVDEKRLSVDIQGNYE 178
A + C C+ HA CVYD
Sbjct: 268 -RPAVGEIFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYDN---------------- 310
Query: 179 GGGVCQECRDNTEGINCHQRVAGYYRPYGKHLNETDVCQPCQCAFHYATGNCAEGTGKCE 238
C+ C NT G +C + Y +P +
Sbjct: 311 SKLTCE-CEHNTTGPDCGKCKKNYQG------------RPWS----PGSYLPIPKGAANA 353
Query: 239 CRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTC 298
C P + N C + E C GT + +C C Y G C+
Sbjct: 354 CIPSISSIGTNVC--------DNELLHCQNGGTCH------NNVRCLCPAAYTGILCE-- 397
Query: 299 AQGYYNFPTCSPCECNAVGSLSDLCEVDSGNCTCRNNFAGRTC 341
C GS C DSG +
Sbjct: 398 -----------KLRCEEAGS----CGSDSGQGAPPHGTHHHHH 425
Score = 54.5 bits (130), Expect = 2e-07
Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 13/102 (12%)
Query: 1648 DCQHNTLGDQCEQCQPGYHGN----ATQGTMADCLICACPLPITSNNFASGCDVSEDGCH 1703
+C+HNT G C +C+ Y G + + AC P S+ + CD C
Sbjct: 316 ECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACI-PSISSIGTNVCDNELLHCQ 374
Query: 1704 MNGTLNFYCEPTSGQQCPCKENYAGDHCDTCAQACNCHGHAD 1745
GT + + +C C Y G C+ C G
Sbjct: 375 NGGTCH------NNVRCLCPAAYTGILCEKL--RCEEAGSCG 408
Score = 51.8 bits (123), Expect = 1e-06
Identities = 23/152 (15%), Positives = 37/152 (24%), Gaps = 31/152 (20%)
Query: 1691 FASGCDVSEDGCHMNGTLNFYCEPTSGQ-QCPCKENYAGDHCDTCAQACN---------- 1739
F + D+ G C + + C C+ N G C C +
Sbjct: 285 FYAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYL 344
Query: 1740 --CHGHADKCVYDPMVDEKRLSVDIQGNYEGGGVCQ-----ECRDNTEGINCHQCVAGYY 1792
G A+ C+ + + + + GG C C GI C +
Sbjct: 345 PIPKGAANACIPSISSIGTNVCDNELLHCQNGGTCHNNVRCLCPAAYTGILCEKL----- 399
Query: 1793 RPYGKHLNETDVCQR---QCLCQPRVTGQTCN 1821
E C Q +
Sbjct: 400 -----RCEEAGSCGSDSGQGAPPHGTHHHHHH 426
Score = 47.1 bits (111), Expect = 4e-05
Identities = 24/141 (17%), Positives = 39/141 (27%), Gaps = 16/141 (11%)
Query: 1455 YYGNAVSLKNCVKCNCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDECRPLYWNLK- 1513
Y+ +K +C CN C + CEC+ G C +C+ Y
Sbjct: 284 YFYAISDIKVRGRCKCNLHA-----TVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPW 338
Query: 1514 ----ASNPDGCEDCDCYTLGTIGGIKNCNPKSGQCVCKATAMNRKCDACVDGTYALQDNN 1569
C + G C+ + C T N C +
Sbjct: 339 SPGSYLPIPKGAANACIPSISSIGTNVCDNELLHCQNGGTCHNNVRCLCPAAYTGIL--- 395
Query: 1570 LFGCTECACDIGGSINNLCNK 1590
C + C+ GS + +
Sbjct: 396 ---CEKLRCEEAGSCGSDSGQ 413
Score = 44.8 bits (105), Expect = 2e-04
Identities = 26/157 (16%), Positives = 42/157 (26%), Gaps = 27/157 (17%)
Query: 1281 FGYDPIIGCEECNCHPHGVNGTQQCDLFDGSCSCKENIVGRTCDHCVEGHWSFPYCVPCE 1340
+ I C C+ H D +C C+ N G C C + + P+
Sbjct: 286 YAISDIKVRGRCKCNLHA--TVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSY 343
Query: 1341 CDLRGTTIDICNQGTAECYCKKNVYGAACDVCKEGTFDIQADNVDGCTRCFCFGKTTKCS 1400
+ + C + C+ G RC C T
Sbjct: 344 LPIPKGAANACIPSISSIGTNVCDN--ELLHCQNGG------TCHNNVRCLCPAAYTG-- 393
Query: 1401 SSNLYRSQLVYCKPCECSGNINRTDPGSCDSVTGECT 1437
+ C+ C + GSC S +G+
Sbjct: 394 ---------ILCEKLRCE------EAGSCGSDSGQGA 415
Score = 42.9 bits (100), Expect = 0.001
Identities = 25/155 (16%), Positives = 38/155 (24%), Gaps = 24/155 (15%)
Query: 1407 SQLVYCKPCECSGNINRTDPGSCDSVTGECTGCLFNSAGDSCQYCAPGYYGNA------V 1460
S + C+C+ + D+ C C N+ G C C Y G +
Sbjct: 289 SDIKVRGRCKCNLHATVCVY---DNSKLTCE-CEHNTTGPDCGKCKKNYQGRPWSPGSYL 344
Query: 1461 SLKNCVKCNCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDECRPLYWNLKASNPDGC 1520
+ C P + C+ + C Y C
Sbjct: 345 PIPKGAANACIPSI--SSIGTNVCDNELLHCQNGGTCHNNVRCLCPAAY------TGILC 396
Query: 1521 EDCDCYTLGTIGGIKNCNPKSGQCVCKATAMNRKC 1555
E C G+ C SGQ +
Sbjct: 397 EKLRCEEAGS------CGSDSGQGAPPHGTHHHHH 425
Score = 36.4 bits (83), Expect = 0.10
Identities = 21/112 (18%), Positives = 31/112 (27%), Gaps = 3/112 (2%)
Query: 333 RNNFAGRTCDSCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFG 392
FAG + A Y + F T + +
Sbjct: 229 FAFFAGPRLRNMASLYGQLDTTKKLR-DFFTVTDLRIRLLRPAVGEIFVDELHLARYFYA 287
Query: 393 YFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFP 444
CKC+++ T+ Y S C C+ N G C C + Y P
Sbjct: 288 ISDIKVRGRCKCNLHATVCVYDN--SKLTCECEHNTTGPDCGKCKKNYQGRP 337
Score = 33.7 bits (76), Expect = 0.63
Identities = 16/78 (20%), Positives = 20/78 (25%), Gaps = 6/78 (7%)
Query: 555 CNCDIRGTEAGICDKTNGSCLCKEGYT--GARCDQCKAGYYGYPDCKLCGCSAVGSSSTA 612
C + G N C+ G T C A Y G C+ C GS
Sbjct: 352 NACIPSISSIGTNVCDNELLHCQNGGTCHNNVRCLCPAAYTG-ILCEKLRCEEAGSCG-- 408
Query: 613 CDVSGKCPCLVNFGGKTC 630
SG+
Sbjct: 409 -SDSGQGAPPHGTHHHHH 425
Score = 33.3 bits (75), Expect = 0.84
Identities = 14/112 (12%), Positives = 25/112 (22%), Gaps = 30/112 (26%)
Query: 565 GICDKTNGSCLCKEGYTGARCDQCKAGYYGYPDCKLCGCSAVGSSSTACDVSGKCPCLVN 624
+ + C + + C + C C + +C C
Sbjct: 343 YLPIPKGAANACIPSISSIGTNVC------DNELLHCQNGGT------CHNNVRCLCPAA 390
Query: 625 FGGKTCSQCSPGFYQYPQCKACNCDSHGNIGVSCDDD-GKCQCEKNFGGDRC 675
+ G C+ C+ G SC D G+
Sbjct: 391 YTG-------------ILCEKLRCEEAG----SCGSDSGQGAPPHGTHHHHH 425
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI,
LE-domain, N neuronal cell adhesion molecule, netrin G
ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens}
PDB: 3zyg_A* 3zyi_B*
Length = 338
Score = 98.1 bits (243), Expect = 8e-22
Identities = 36/139 (25%), Positives = 58/139 (41%), Gaps = 15/139 (10%)
Query: 23 SLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIK 82
L + ++ L+E+ T++R+RLLR + +YFY+I
Sbjct: 209 DLRNMDNLYTRLESAKGLKEFFTLTDLRMRLLR------PALGGTYVQRENLYKYFYAIS 262
Query: 83 DISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWR-----Q 137
+I + GRC+CN HA++C C C+HNT G +C C + ++WR
Sbjct: 263 NIEVIGRCKCNLHANLCS----MREGSLQCECEHNTTGPDCGKCKKNFRTRSWRAGSYLP 318
Query: 138 SQSNKPFSCEPCNCHGHAD 156
P +C H H
Sbjct: 319 LPHGSPNACAAAGSHHHHH 337
Score = 55.7 bits (133), Expect = 7e-08
Identities = 17/143 (11%), Positives = 36/143 (25%), Gaps = 19/143 (13%)
Query: 612 ACDVSGKCPCLVNFGGKTCSQCSPGFYQYPQCKACNCDSHGNIGVSCDDDGKCQCEKNFG 671
+V + + K + + + G +
Sbjct: 195 RFEVRDRFAIFAGPDLRNMDNLYTRLESAKGLKEFFTLTDLRMRLLRPALGGTYVQ---- 250
Query: 672 GDRCERCKEGLYNFPICEACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCERCKEGLYNFP 731
+ + + N + C C+ H N+ + +C+CE N G C +CK+
Sbjct: 251 RENLYKYFYAISNIEVIGRCKCNLHANLCSMREGSLQCECEHNTTGPDCGKCKKNFRTRS 310
Query: 732 ---------------ICEECNCN 739
C +
Sbjct: 311 WRAGSYLPLPHGSPNACAAAGSH 333
Score = 54.2 bits (129), Expect = 2e-07
Identities = 15/87 (17%), Positives = 25/87 (28%), Gaps = 15/87 (17%)
Query: 627 GKTCSQCSPGFYQYPQCKACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCERCKEGLYNFP 686
+ + C C+ H N+ + +C+CE N G C +CK+
Sbjct: 251 RENLYKYFYAISNIEVIGRCKCNLHANLCSMREGSLQCECEHNTTGPDCGKCKKNFRTRS 310
Query: 687 ---------------ICEACNCDSHGN 698
C A H +
Sbjct: 311 WRAGSYLPLPHGSPNACAAAGSHHHHH 337
Score = 53.8 bits (128), Expect = 3e-07
Identities = 15/108 (13%), Positives = 24/108 (22%), Gaps = 19/108 (17%)
Query: 223 FHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQ 282
F T + + + CKC+ C G
Sbjct: 229 FFTLTDLRMRLLRPALGGTYVQRENLYKYFYAISNIEVIGRCKCN---LHANLCSMREGS 285
Query: 283 -QCPCKENYAGDHCDTCAQGYYNFPT---------------CSPCECN 314
QC C+ N G C C + + C+ +
Sbjct: 286 LQCECEHNTTGPDCGKCKKNFRTRSWRAGSYLPLPHGSPNACAAAGSH 333
Score = 53.0 bits (126), Expect = 4e-07
Identities = 23/175 (13%), Positives = 38/175 (21%), Gaps = 11/175 (6%)
Query: 205 PYGKHLNETDVCQPCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPC 264
+ V C + G+ E + E R + Y E
Sbjct: 166 RDMSSSSAHRV--LCTEEYSRWAGSKKEKHVRFEVRDRFAIFAGPDLRNMDNLYTRLESA 223
Query: 265 KCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFPTCSPCECNAVGSLSDLCE 324
K + ++ N C+CN +L + E
Sbjct: 224 KGLKEFFTLTDLRMRLLRPALGGTYVQRENLYKYFYAISNIEVIGRCKCNLHANLCSMRE 283
Query: 325 VDSGNCTCRNNFAGRTCDSCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCECRP 379
S C C +N G C C + + + C
Sbjct: 284 -GSLQCECEHNTTGPDCGKCKKNFRTRS--------WRAGSYLPLPHGSPNACAA 329
Score = 51.8 bits (123), Expect = 1e-06
Identities = 15/109 (13%), Positives = 25/109 (22%), Gaps = 15/109 (13%)
Query: 560 RGTEAGICDKTNGSCLCKEGYTGARCDQCKAGYYGYPDCKLCGCSAVGSSSTACDVSGKC 619
T + + L + C C+ + + + S +C
Sbjct: 229 FFTLTDLRMRLLRPALGGTYVQRENLYKYFYAISNIEVIGRCKCNLHANLCSMREGSLQC 288
Query: 620 PCLVNFGGKTCSQCSPGFYQYP---------------QCKACNCDSHGN 653
C N G C +C F C A H +
Sbjct: 289 ECEHNTTGPDCGKCKKNFRTRSWRAGSYLPLPHGSPNACAAAGSHHHHH 337
Score = 51.1 bits (121), Expect = 2e-06
Identities = 17/114 (14%), Positives = 28/114 (24%), Gaps = 5/114 (4%)
Query: 340 TCDSCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNC 399
+ + Y + F T + + +
Sbjct: 209 DLRNMDNLYTRLESAKGLKE-FFTLTDLRMRLLRPALGGTYVQRENLYKYFYAISNIEVI 267
Query: 400 EPCKCHMNGTLDFYCEPASGQ-QCPCKENYAGDHCDTCAQGYYNFPTCSQITLP 452
CKC+ C G QC C+ N G C C + + + LP
Sbjct: 268 GRCKCN---LHANLCSMREGSLQCECEHNTTGPDCGKCKKNFRTRSWRAGSYLP 318
Score = 48.4 bits (114), Expect = 1e-05
Identities = 20/113 (17%), Positives = 27/113 (23%), Gaps = 15/113 (13%)
Query: 308 CSPCECNAVGSLSDLCEVDSGNCTCRNNFAGRTCDSCADGYYNYPRCTSCQCAFHYATGN 367
S +L+DL N C+C H +
Sbjct: 221 ESAKGLKEFFTLTDLRMRLLRPALGGTYVQRENLYKYFYAISNIEVIGRCKCNLHANLCS 280
Query: 368 CAEGTGKCECRPEYTKPDCNSCAFGYFGYP---------------NCEPCKCH 405
EG+ +CEC T PDC C + C H
Sbjct: 281 MREGSLQCECEHNTTGPDCGKCKKNFRTRSWRAGSYLPLPHGSPNACAAAGSH 333
Score = 45.7 bits (107), Expect = 1e-04
Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 15/88 (17%)
Query: 717 GDRCERCKEGLYNFPICEECNCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDECRPL 776
+ + + N + C CN C CEC+ G C +C+
Sbjct: 251 RENLYKYFYAISNIEVIGRCKCNLHA-----NLCSMREGSLQCECEHNTTGPDCGKCKKN 305
Query: 777 YW----------NLKASNPDGCEDCDCY 794
+ L +P+ C +
Sbjct: 306 FRTRSWRAGSYLPLPHGSPNACAAAGSH 333
Score = 45.3 bits (106), Expect = 1e-04
Identities = 18/107 (16%), Positives = 28/107 (26%), Gaps = 18/107 (16%)
Query: 1708 LNFYCEPTSGQQCPCKENYAGDHCDTCAQACNCHGHADKCVYDPMVDEKRLSVDIQGNYE 1767
L T Q+ + + C C+ HA+ C
Sbjct: 240 LRPALGGTYVQRENLYKYFYAISNIEVIGRCKCNLHANLCSMRE---------------- 283
Query: 1768 GGGVCQECRDNTEGINCHQCVAGYY-RPYGKHLNETDVCQRQCLCQP 1813
G + EC NT G +C +C + R + C
Sbjct: 284 -GSLQCECEHNTTGPDCGKCKKNFRTRSWRAGSYLPLPHGSPNACAA 329
Score = 44.1 bits (103), Expect = 3e-04
Identities = 15/125 (12%), Positives = 27/125 (21%), Gaps = 24/125 (19%)
Query: 108 YHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSCEPCNCHGHADKCVYDPMVDEK 167
+ + + E + C C+ HA+ C
Sbjct: 229 FFTLTDLRMRLLRPALGGTYVQRENLYKYFYAISNIEVIGRCKCNLHANLCSMRE----- 283
Query: 168 RLSVDIQGNYEGGGVCQECRDNTEGINCHQRVAGYYR-------PYGKHLNETDVCQPCQ 220
G + EC NT G +C + + + C
Sbjct: 284 ------------GSLQCECEHNTTGPDCGKCKKNFRTRSWRAGSYLPLPHGSPNACAAAG 331
Query: 221 CAFHY 225
H+
Sbjct: 332 SHHHH 336
Score = 42.6 bits (99), Expect = 0.001
Identities = 22/174 (12%), Positives = 38/174 (21%), Gaps = 18/174 (10%)
Query: 1247 CNCPFTAVCDSYTGECICAARVIGKKCDQCEPNTFGYDPIIGCEECNCHPHG-VNGTQQC 1305
C ++ S + + V + P+ D + E T
Sbjct: 178 CTEEYSRWAGSKKEKHV-RFEVRDRFAIFAGPDLRNMDNLYTRLESAKGLKEFFTLTDLR 236
Query: 1306 DLFDGSCSCKENIVGRTCDHCVEGHWSFPYCVPCECDLRGTTIDICNQGTAECYCKKNVY 1365
+ + C+C+L +G+ +C C+ N
Sbjct: 237 MRLLRPALGGTYVQRENLYKYFYAISNIEVIGRCKCNLHANLCS-MREGSLQCECEHNTT 295
Query: 1366 GAACDVCKEGTFDIQADNVDGCTRCFCFGKTTKCSSSNLYRSQLVYCKPCECSG 1419
G C CK+ F S L C
Sbjct: 296 GPDCGKCKKN---------------FRTRSWRAGSYLPLPHGSPNACAAAGSHH 334
Score = 40.7 bits (94), Expect = 0.003
Identities = 14/98 (14%), Positives = 19/98 (19%), Gaps = 15/98 (15%)
Query: 1215 QFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNCPFTA---VCDSYTGECICAARVIGK 1271
+ V C C A + +C C G
Sbjct: 238 RLLRPALGGTYVQRENLYKYFYAISNIEVIGRCKCNLHANLCSMREGSLQCECEHNTTGP 297
Query: 1272 KCDQCEPNTFGYDPIIG------------CEECNCHPH 1297
C +C+ N G C H H
Sbjct: 298 DCGKCKKNFRTRSWRAGSYLPLPHGSPNACAAAGSHHH 335
Score = 39.5 bits (91), Expect = 0.008
Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 15/79 (18%)
Query: 204 RPYGKHLNETDVCQPCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYP---- 259
Y ++ +V C+C H + EG+ +CEC T PDC C +
Sbjct: 255 YKYFYAISNIEVIGRCKCNLHANLCSMREGSLQCECEHNTTGPDCGKCKKNFRTRSWRAG 314
Query: 260 -----------NCEPCKCH 267
C H
Sbjct: 315 SYLPLPHGSPNACAAAGSH 333
Score = 39.1 bits (90), Expect = 0.010
Identities = 13/92 (14%), Positives = 25/92 (27%), Gaps = 19/92 (20%)
Query: 1445 GDSCQYCAPGYYGNAVSLKNCVKCNCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDE 1504
++ ++ +C CN C CEC+ G C +
Sbjct: 251 RENLYKYFYAISN----IEVIGRCKCNLHA-----NLCSMREGSLQCECEHNTTGPDCGK 301
Query: 1505 CRPLYW----------NLKASNPDGCEDCDCY 1526
C+ + L +P+ C +
Sbjct: 302 CKKNFRTRSWRAGSYLPLPHGSPNACAAAGSH 333
Score = 39.1 bits (90), Expect = 0.011
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 9/44 (20%)
Query: 1648 DCQHNTLGDQCEQCQPGYHG---------NATQGTMADCLICAC 1682
+C+HNT G C +C+ + G+ C
Sbjct: 289 ECEHNTTGPDCGKCKKNFRTRSWRAGSYLPLPHGSPNACAAAGS 332
Score = 38.0 bits (87), Expect = 0.029
Identities = 13/77 (16%), Positives = 20/77 (25%), Gaps = 17/77 (22%)
Query: 1407 SQLVYCKPCECSGNINRTDPGSCDSVTGECT-GCLFNSAGDSCQYCAPGYYGN------- 1458
S + C+C+ + N C G C N+ G C C +
Sbjct: 262 SNIEVIGRCKCNLHANL-----CSMREGSLQCECEHNTTGPDCGKCKKNFRTRSWRAGSY 316
Query: 1459 ----AVSLKNCVKCNCN 1471
S C +
Sbjct: 317 LPLPHGSPNACAAAGSH 333
Score = 35.7 bits (81), Expect = 0.12
Identities = 15/93 (16%), Positives = 23/93 (24%), Gaps = 25/93 (26%)
Query: 1174 YLDNSTSEFCKKATFSMTISFLHEALPCQCDIDGSKSFECEQFGGQ--CQCKPNVIGRRC 1231
Y+ A IS + C+C+ + C G C+C+ N G C
Sbjct: 248 YVQRENLYKYFYA-----ISNIEVIGRCKCN---LHANLCSMREGSLQCECEHNTTGPDC 299
Query: 1232 EMCATGYYGFP---------------DCHPCNC 1249
C + C
Sbjct: 300 GKCKKNFRTRSWRAGSYLPLPHGSPNACAAAGS 332
Score = 35.7 bits (81), Expect = 0.14
Identities = 17/121 (14%), Positives = 25/121 (20%), Gaps = 47/121 (38%)
Query: 1649 CQHNTLGDQCEQCQPGYHGNATQGTMADCLICACPLPITSNNFASGCDVSEDGCHMNGTL 1708
+ G ++ + A + C C N A+ C + E
Sbjct: 240 LRPALGGTYVQRENLYKYFYAISN-IEVIGRCKC------NLHANLCSMREGSLQ----- 287
Query: 1709 NFYCEPTSGQQCPCKENYAGDHCDTCA------------------------QACNCHGHA 1744
C C+ N G C C A H H
Sbjct: 288 -----------CECEHNTTGPDCGKCKKNFRTRSWRAGSYLPLPHGSPNACAAAGSHHHH 336
Query: 1745 D 1745
Sbjct: 337 H 337
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 88.2 bits (218), Expect = 3e-18
Identities = 50/268 (18%), Positives = 89/268 (33%), Gaps = 20/268 (7%)
Query: 553 QVCNCDIRGTEAGICDKTNGSCLCKEGYTGARCDQCKAGYYGYPDCKLCGCSAVGSSSTA 612
+ + + + G L +T +C+A +G P+C C+A ++
Sbjct: 155 HLPHAQPQDA-GVYSARYIGGNLFTSAFTRLIVRRCEAQKWG-PECN-HLCTACMNNGVC 211
Query: 613 CDVSGKCPCLVNFGGKTCSQ-CSPGFYQYPQCKACNCDSHGNIGVSCD-DDGKCQCEKNF 670
+ +G+C C F G+TC + C + + C+ V C D C C +
Sbjct: 212 HEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATGW 271
Query: 671 GGDRCE-RCKEGLYNFPICEACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCERCKEGLYN 729
G +C C G Y C+C++ CD C C + G +CER
Sbjct: 272 KGLQCNEACHPGFYGPDCKLRCSCNNGE----MCDRFQGCLCSPGWQGLQCEREGIPRMT 327
Query: 730 FPICEECNCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDECRPLYWNLKASNPDGCE 789
I + + S +C+ +E + + +P
Sbjct: 328 PKIVDLPDHIE---------VNSGKFNPICKA-SGWPLPTNEEMTLVKPDGTVLHPKDFN 377
Query: 790 DCDCYTLGTIGGIKNCNPKSGQCVCKAT 817
D +++ + P SG VC
Sbjct: 378 HTDHFSVAIFTIHRILPPDSGVWVCSVN 405
Score = 86.7 bits (214), Expect = 1e-17
Identities = 38/286 (13%), Positives = 65/286 (22%), Gaps = 19/286 (6%)
Query: 182 VCQECRDNTEGINCHQRVAGYYRPYGKHLNETDVCQPCQCAFHYATGNCAEGTGKCECRP 241
++ E ++ + + + + A A G
Sbjct: 120 SFKKVLIKEEDAVIYKNGSFIHSVPRHEVPDILEVHLPHAQPQDAGVYSARYIGGNLFTS 179
Query: 242 EYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDT-CAQ 300
+T+ C +G C MN C +G+ C C + G C+ C
Sbjct: 180 AFTRLIVRRCEAQKWGPECNHLCTACMNNG---VCHEDTGE-CICPPGFMGRTCEKACEL 235
Query: 301 GYYNFPTCSPCECNAVGSLSDLCEVDSGNCTCRNNFAGRTCD-SCADGYYNYPRCTSCQC 359
+ C C D C+C + G C+ +C G+Y C C
Sbjct: 236 HTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSC 295
Query: 360 AFHYATGNCAEGTGKCECRPEYTKPDCN-SCAFGYFGYPNCEPCKCHMNGTLDFYCEPAS 418
G + C C P + C P
Sbjct: 296 ----NNGEMCDRFQGCLCSPGWQGLQCEREGIPRMTPKIVDLPDHIE--------VNSGK 343
Query: 419 GQQCPCKENYAGDHCDTCAQGYYNFPTCSQITLPDVPVIRVLMATI 464
+ + + V + TI
Sbjct: 344 FNPICKASGWPLPTNEEMTLVKPDGTVLHPKDFNHTDHFSVAIFTI 389
Score = 75.9 bits (186), Expect = 4e-14
Identities = 51/296 (17%), Positives = 81/296 (27%), Gaps = 21/296 (7%)
Query: 562 TEAGICDKTNGSCLCKEGYTGARCDQCKAGYYGYPDCKLCGCSAVGSSSTACDVSGKCPC 621
+ + K + + K G + + L + + G
Sbjct: 120 SFKKVLIKEEDAVIYKNGSFIHSVPRH--EVPDILEVHLPHAQPQDAGVYSARYIGGNLF 177
Query: 622 LVNFGGKTCSQCSPGFYQYPQCKACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCER-CKE 680
F +C + P+C C + N GV +D G+C C F G CE+ C+
Sbjct: 178 TSAFTRLIVRRCEAQKWG-PECN-HLCTACMNNGVCHEDTGECICPPGFMGRTCEKACEL 235
Query: 681 GLYNFPICEACNCDSHGNIGVSCD-DDGKCQCEKNFGGDRCE-RCKEGLYNFPICEECNC 738
+ E C+ V C D C C + G +C C G Y C+C
Sbjct: 236 HTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSC 295
Query: 739 NPEGVLKTFAGCGSLPAGELCECKPKVQGRICDECRPLYWNLKASNPDGCEDCDCYTLGT 798
N + F G C C P QG C+ P + D + +
Sbjct: 296 NNGEMCDRFQG---------CLCSPGWQGLQCEREGIPRM-----TPKIVDLPDHIEVNS 341
Query: 799 IGGIKNCNPKSGQCVCKATAMNRKCDACMDGTYALQDNNLFGCTECACDIGGSINN 854
C K D + + F ++
Sbjct: 342 GKFNPICKASGWPLPTNEEMTLVKPDGTVLHPKDFNHTDHFSVAIFTIHRILPPDS 397
Score = 75.1 bits (184), Expect = 6e-14
Identities = 39/242 (16%), Positives = 57/242 (23%), Gaps = 27/242 (11%)
Query: 183 CQECRDNTEGINCHQRVAGYYRPYGKHLNETDVCQPCQCAFHYATGNCAEGTGKCECRPE 242
+ + A + P +C C G C E TG+C C P
Sbjct: 174 GNLFTSAFTRLIVRRCEAQKWGP-----ECNHLCTACMN-----NGVCHEDTGECICPPG 223
Query: 243 YTKPDCN-SCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDT-CAQ 300
+ C +C FG E C +C P C C + G C+ C
Sbjct: 224 FMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYG-CSCATGWKGLQCNEACHP 282
Query: 301 GYYNFPTCSPCECNAVGSLSDLCEVDSGNCTCRNNFAGRTCDSCADGYYNYPRCTSCQCA 360
G+Y C CN C C + G C+
Sbjct: 283 GFYGPDCKLRCSCNNGE-----MCDRFQGCLCSPGWQGLQCEREGIPRMTPKIVDLPDHI 337
Query: 361 FHYATGNCAEGTGKCECRPE-YTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASG 419
G C+ + P P + F +
Sbjct: 338 ------EVNSGKFNPICKASGWPLPTNEEMTLVKPDGTVLHPKDFNHTD--HFSVAIFTI 389
Query: 420 QQ 421
+
Sbjct: 390 HR 391
Score = 74.7 bits (183), Expect = 8e-14
Identities = 38/193 (19%), Positives = 60/193 (31%), Gaps = 12/193 (6%)
Query: 1213 CEQFGGQCQCKPNVIGRRCEMCATGYYGFP-DCHPCNCPFTAVCDSYTGECICAARVIGK 1271
++ G C +G + C VC TGECIC +G+
Sbjct: 168 SARYIGGNLFTSAFTRLIVRRCEAQKWGPECNHLCTACMNNGVCHEDTGECICPPGFMGR 227
Query: 1272 KCDQ-CEPNTFGYDPIIGCEECNCHPHGVNGTQQCDLFDGSCSCKENIVGRTCDH-CVEG 1329
C++ CE +TFG E C+ + C CSC G C+ C G
Sbjct: 228 TCEKACELHTFGRTC---KERCSGQEGCKSY-VFCLPDPYGCSCATGWKGLQCNEACHPG 283
Query: 1330 HWSFPYCVPCECDLRGTTIDICNQGTAECYCKKNVYGAACDVCKEGTFDIQADNVDGCTR 1389
+ + C C+ C++ C C G C+ + ++
Sbjct: 284 FYGPDCKLRCSCNNGEM----CDRFQ-GCLCSPGWQGLQCEREGIPRMTPKIVDLPDHIE 338
Query: 1390 CFCFGKTTKCSSS 1402
C +S
Sbjct: 339 VNSGKFNPICKAS 351
Score = 62.8 bits (152), Expect = 5e-10
Identities = 22/157 (14%), Positives = 44/157 (28%), Gaps = 10/157 (6%)
Query: 550 NARQVCNCDIRGTEAGICDKTNGSCLCKEGYTGARCDQ-CKAGYYGYPDCKLCGCSAVGS 608
++ C+ C C C G+ G +C++ C G+YG C C+
Sbjct: 241 TCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEM 300
Query: 609 SSTACDVSGKCPCLVNFGGKTCSQCSPGFYQYPQCKACNCDSHGNIGVSCDDDGKCQCEK 668
CD C C + G C + + + + C+
Sbjct: 301 ----CDRFQGCLCSPGWQGLQCEREGIPRMTPKIVDLPDHIEVNSGKFNPI----CKAS- 351
Query: 669 NFGGDRCERCKEGLYNFPICEACNCDSHGNIGVSCDD 705
+ E + + + + + V+
Sbjct: 352 GWPLPTNEEMTLVKPDGTVLHPKDFNHTDHFSVAIFT 388
Score = 56.6 bits (136), Expect = 4e-08
Identities = 29/161 (18%), Positives = 44/161 (27%), Gaps = 5/161 (3%)
Query: 1200 PCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEM-CATGYYGFPDCHPCNCPFTAVCDSY 1258
C C C C G +C C G+YG C+C +CD +
Sbjct: 245 RCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRF 304
Query: 1259 TGECICAARVIGKKCDQCEPNTFGYDPIIGCEECNCHPHGVNGTQQCDLFDGSCSCKENI 1318
G C+C+ G +C++ P I + + C E +
Sbjct: 305 QG-CLCSPGWQGLQCEREGIP--RMTPKIVDLPDHIEVNSGKFNPICKASGWPLPTNEEM 361
Query: 1319 VGRTCDHCVEGHWSFPYCVPCEC-DLRGTTIDICNQGTAEC 1358
D V F + I + G C
Sbjct: 362 TLVKPDGTVLHPKDFNHTDHFSVAIFTIHRILPPDSGVWVC 402
Score = 50.9 bits (121), Expect = 3e-06
Identities = 37/268 (13%), Positives = 56/268 (20%), Gaps = 52/268 (19%)
Query: 95 HADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSCEPCNCHGH 154
HA D Y C C C +G
Sbjct: 158 HAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQKWGPECNH-------LCTACMNNGV 210
Query: 155 ADKCVYDPMVDEKRLSVDIQGNYEGGGVCQECRDNTEGINCHQRVAGYYRPYGKHLNETD 214
E G C C G C + + +G+ E
Sbjct: 211 CH---------------------EDTGECI-CPPGFMGRTCEKACELHT--FGRTCKERC 246
Query: 215 VCQPCQCAFHYATGNCAEGTGKCECRPEYTKPDCN-SCAFGYFGYPNCEPCKCHMNGTLD 273
Q + C C C + CN +C G++G C C+
Sbjct: 247 SGQEG----CKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEM-- 300
Query: 274 FYCEPASGQQCPCKENYAGDHCDT-CAQGYYNFPTCSPCECNAVGSLSDLCEVDSGNCTC 332
C+ G C C + G C+ P N C
Sbjct: 301 --CDRFQG--CLCSPGWQGLQCEREGIPRMTPKIVDLPDHIE--------VNSGKFNPIC 348
Query: 333 RNN-FAGRTCDSCADGYYNYPRCTSCQC 359
+ + + T + +
Sbjct: 349 KASGWPLPTNEEMTLVKPDGTVLHPKDF 376
Score = 37.0 bits (85), Expect = 0.065
Identities = 50/332 (15%), Positives = 75/332 (22%), Gaps = 56/332 (16%)
Query: 1257 SYTGECICAARVIGKKCDQCEPNTFGYDPIIGCEECNCHPHGVNGTQQCDLFDGSCSCKE 1316
S+ I + K + ++ E H + + G
Sbjct: 120 SFKKVLIKEEDAVIYKNGSFIHSVPRHEVPDILEVHLPHAQPQDAGVYSARYIGGNLFTS 179
Query: 1317 NIVGRTCDHCVEGHWSFPYCVPCECDLRGTTIDICNQGTAECYCKKNVYGAACD-VCKEG 1375
C W C + C++ T EC C G C+ C+
Sbjct: 180 AFTRLIVRRCEAQKWGPECNHLCTACMNNGV---CHEDTGECICPPGFMGRTCEKACELH 236
Query: 1376 TFDIQADNVDGCTRCFCFGKTTKCSSSNLYRSQLVYCKPCECSGNINRTDPGSCDSVTGE 1435
TF CSG C
Sbjct: 237 TFG--------------------------------RTCKERCSGQEGCKSYVFCLPDPYG 264
Query: 1436 CTGCLFNSAGDSCQ-YCAPGYYGNAVSLKNCVKCNCNPEGVLKTFAGCGSLPAGELCECK 1494
C+ C G C C PG+YG ++C+CN + F GC C
Sbjct: 265 CS-CATGWKGLQCNEACHPGFYGPDC----KLRCSCNNGEMCDRFQGC---------LCS 310
Query: 1495 PKVQGRICDECRPLYWNLKASNPDGCEDCDCYTLGTIGGIKNCNPKSGQCVCKATAMNRK 1554
P QG C+ P + D + + C K
Sbjct: 311 PGWQGLQCEREGIPRM-----TPKIVDLPDHIEVNSGKFNPICKASGWPLPTNEEMTLVK 365
Query: 1555 CDACVDGTYALQDNNLFGCTECACDIGGSINN 1586
D V + F ++
Sbjct: 366 PDGTVLHPKDFNHTDHFSVAIFTIHRILPPDS 397
Score = 33.9 bits (77), Expect = 0.59
Identities = 27/211 (12%), Positives = 44/211 (20%), Gaps = 47/211 (22%)
Query: 112 CRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSCEPCNCHGHADKCVYDPMVDEKRLSV 171
C C G CE C + + ++ + E C +
Sbjct: 218 CICPPGFMGRTCEKACELH---TFGRTCKERCSGQEGCKSYVFCLP-------------- 260
Query: 172 DIQGNYEGGGVCQECRDNTEGINCHQRV-AGYYRPYGKHLNETDVCQPCQCAFHYATGNC 230
C C +G+ C++ G+Y P D C C G
Sbjct: 261 -------DPYGCS-CATGWKGLQCNEACHPGFYGP--------DCKLRCSC----NNGEM 300
Query: 231 AEGTGKCECRPEYTKPDCN-SCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKEN 289
+ C C P + C P
Sbjct: 301 CDRFQGCLCSPGWQGLQCEREGIPRMTPKIVDLPDHIE--------VNSGKFNPICKASG 352
Query: 290 YAGDHCDTCAQGYYNFPTCSPCECNAVGSLS 320
+ + + P + N S
Sbjct: 353 WPLPTNEEMTLVKPDGTVLHPKDFNHTDHFS 383
Score = 30.4 bits (68), Expect = 5.7
Identities = 39/205 (19%), Positives = 58/205 (28%), Gaps = 22/205 (10%)
Query: 1637 QNGQFYEAQLPDCQHNTLGDQCEQCQPGYHGNAT-----QGTMADCLICACPLPITSNNF 1691
+NG F + + L QP G + + +
Sbjct: 135 KNGSFIHSVPRHEVPDILEVHLPHAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQKW 194
Query: 1692 ASGCDVSEDGCHMNGTLNFYCEPTSGQQCPCKENYAGDHCDTCAQACNCHGHADKCVYDP 1751
C+ C NG C +G+ C C + G C+ +AC H C
Sbjct: 195 GPECNHLCTACMNNGV----CHEDTGE-CICPPGFMGRTCE---KACELHTFGRTCKERC 246
Query: 1752 MVDEKRLSVDIQGNYEGGGVCQECRDNTEGINCHQ-CVAGYYRPYGKHL-----NETDVC 1805
E C C +G+ C++ C G+Y P K E
Sbjct: 247 SGQEG--CKSYVFCLPDPYGCS-CATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDR 303
Query: 1806 QRQCLCQPRVTGQTCNQPLQAHYYP 1830
+ CLC P G C + P
Sbjct: 304 FQGCLCSPGWQGLQCEREGIPRMTP 328
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 75.9 bits (186), Expect = 9e-14
Identities = 49/248 (19%), Positives = 75/248 (30%), Gaps = 30/248 (12%)
Query: 565 GICDKTNGSCLCKEGYTGARCD--QCKAGYYGYPDCKLCGCSAVGSSSTACDVSGKCPCL 622
G G C C G+ G++C+ + +C V S C + G+C C
Sbjct: 451 GNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGEC-LCGQCVCH 509
Query: 623 VNFGGKTCSQ-CSPGFYQYPQCKACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCERCKEG 681
+ GK + C + + K C HG C G C C+ ++ G C C
Sbjct: 510 SSDFGKITGKYCECDDFSCVRYKGEMCSGHG----QC-SCGDCLCDSDWTGYYCN-CTTR 563
Query: 682 LYNFPICEACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCER---CKEGLYNFPICEECNC 738
C G C+ + GD CE+ C + C EC
Sbjct: 564 TDTCMSSNGLLCSGRG----KCECGSCVCIQPGSYGDTCEKCPTCPDACTFKKECVECKK 619
Query: 739 NPEGVLKTFAGCGSLPAGEL----CECKPKVQGRIC-----DECRPLYWNLKASNPDG-- 787
G L C E+ C D+C + + S+
Sbjct: 620 FDRGALHDENTCNRYCRDEIESVKELKDTGKDAVNCTYKNEDDCVVRFQYYEDSSGKSIL 679
Query: 788 --CEDCDC 793
E+ +C
Sbjct: 680 YVVEEPEC 687
Score = 68.6 bits (167), Expect = 1e-11
Identities = 43/230 (18%), Positives = 63/230 (27%), Gaps = 26/230 (11%)
Query: 211 NETDVCQPCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNG 270
+ + C + G DC NG
Sbjct: 398 SIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCAC------QAQAEPNSHRCNNG 451
Query: 271 TLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFPTCSPCECNAVGSL-SDLCEVDSGN 329
F C C C + G C+ C++ Y C + S E G
Sbjct: 452 NGTFEC-----GVCRCGPGWLGSQCE-CSEEDYRPSQQDECSPREGQPVCSQRGECLCGQ 505
Query: 330 CTCRNNFAGRTC-DSCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCECRPEYTKPDCNS 388
C C ++ G+ C ++ R C+ H G C+ G C C ++T CN
Sbjct: 506 CVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGH---GQCS--CGDCLCDSDWTGYYCN- 559
Query: 389 CAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQ 438
C + C G CE G + GD C+ C
Sbjct: 560 CTTRTDTCMSSNGLLCSGRGK----CE--CGSCVCIQPGSYGDTCEKCPT 603
Score = 65.9 bits (160), Expect = 9e-11
Identities = 39/223 (17%), Positives = 59/223 (26%), Gaps = 34/223 (15%)
Query: 216 CQPCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFY 275
Q + GN G C C P + C C+ + + C +
Sbjct: 439 AQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCE-CSEEDYRPSQQDECSPREGQPVCSQ 497
Query: 276 CEPASGQQCPCKENYAGDHC-DTCAQGYYNFPTCSPCECNAVGSLSDLCEVDSGNCTCRN 334
QC C + G C ++ C+ G C G+C C +
Sbjct: 498 RGECLCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQ----C--SCGDCLCDS 551
Query: 335 NFAGRTCDSCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYF 394
++ G C+ C C+ G C G+ C +P C C
Sbjct: 552 DWTGYYCN-CTTRTDTCMSSNGLLCSGR---GKCECGSCVC-IQPGSYGDTCEKC----- 601
Query: 395 GYPNCE-PCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTC 436
P C C + CK+ G D
Sbjct: 602 --PTCPDACTFK-------------KECVECKKFDRGALHDEN 629
Score = 61.3 bits (148), Expect = 3e-09
Identities = 44/280 (15%), Positives = 77/280 (27%), Gaps = 45/280 (16%)
Query: 553 QVCNCDIRGTEAGICDKTNGSCLCKEGYTGARCDQCKAGYYGYPDCKLCGCSAVGSSSTA 612
+ G + + + C C G +C +C C
Sbjct: 412 KSFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNSHRCNNGNGTFECGVCRCGP------- 464
Query: 613 CDVSGKCPCLVNFGGKTCSQCSPGFYQYPQCKACNCDSHGNIGVSCDD--DGKCQCEKNF 670
+ G C +CS Y+ Q C+ + + G+C C +
Sbjct: 465 -----------GWLGSQC-ECSEEDYRPSQQDECSPREGQPVCSQRGECLCGQCVCHSSD 512
Query: 671 GGDRCER-CKEGLYNFPICEACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCERCKEGLYN 729
G + C+ ++ + C HG C G C C+ ++ G C C
Sbjct: 513 FGKITGKYCECDDFSCVRYKGEMCSGHG----QC-SCGDCLCDSDWTGYYCN-CTTRTDT 566
Query: 730 FPICEECNCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDECRPLYWNLKASNPDGCE 789
C+ G G G +P G C++C + C
Sbjct: 567 CMSSNGLLCS---------GRGKCECGSCVCIQPGSYGDTCEKCPTCPDA--CTFKKECV 615
Query: 790 DCDCYTLGTIGGIKNCNP------KSGQCVCKATAMNRKC 823
+C + G + CN +S + + C
Sbjct: 616 ECKKFDRGALHDENTCNRYCRDEIESVKELKDTGKDAVNC 655
Score = 57.0 bits (137), Expect = 5e-08
Identities = 31/220 (14%), Positives = 57/220 (25%), Gaps = 19/220 (8%)
Query: 241 PEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQ 300
PE N+ P + C G + A + CP ++ + +
Sbjct: 363 PEELSLSFNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFK 422
Query: 301 GYYNFPTCSPCECNAVG--------SLSDLCEVDSGNCTCRNNFAGRTCDSCADGYYNYP 352
C+C + + G C C + G C+ C++ Y
Sbjct: 423 DSLIVQVTFDCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCE-CSEEDYRPS 481
Query: 353 RCTSCQCAFHYAT--GNCAEGTGKCECRPEYTKPDCNS-CAFGYFGYPNCEPCKCHMNGT 409
+ C G+C C C F + C +G
Sbjct: 482 QQDECSPREGQPVCSQRGECLCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQ 541
Query: 410 LDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFPTCSQI 449
C C C ++ G +C+ + + +
Sbjct: 542 ----CSCG---DCLCDSDWTGYYCNCTTRTDTCMSSNGLL 574
Score = 56.6 bits (136), Expect = 7e-08
Identities = 45/225 (20%), Positives = 69/225 (30%), Gaps = 25/225 (11%)
Query: 1200 PCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNCPFTAVCDSYT 1259
+ + + G C+C P +G +CE C+ Y C+ S
Sbjct: 440 QAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCE-CSEEDYRPSQQDECSPREGQPVCSQR 498
Query: 1260 GECI-----CAARVIGKKCDQ-CEPNTFGYDPIIGCEECNCHPHGVNGTQQCDLFDGSCS 1313
GEC+ C + GK + CE + F + + C HG QC G C
Sbjct: 499 GECLCGQCVCHSSDFGKITGKYCECDDFS---CVRYKGEMCSGHG-----QCS--CGDCL 548
Query: 1314 CKENIVGRTCDHCVEGHWSFPYCVPCECDLRGTTIDICNQGTAECYCKKNVYGAACDVCK 1373
C + G C+ C + C RG C G+ C + YG C+ C
Sbjct: 549 CDSDWTGYYCN-CTTRTDTCMSSNGLLCSGRGK----CECGSCVC-IQPGSYGDTCEKCP 602
Query: 1374 EGTFDIQADNVDGCTRCFCFGKTTKCSSSNLYRSQLVYCKPCECS 1418
C C F + + R + +
Sbjct: 603 TCPDACTFKKE--CVECKKFDRGALHDENTCNRYCRDEIESVKEL 645
Score = 52.4 bits (125), Expect = 1e-06
Identities = 38/242 (15%), Positives = 59/242 (24%), Gaps = 30/242 (12%)
Query: 576 CKEGYTGARCDQCKAGYYGYPDCKLCGCSAVGSSSTACDVSGKCPCLVNFGGKTCSQCSP 635
C C G G P F Q +
Sbjct: 374 CLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPV--GFKDSLIVQVTF 431
Query: 636 GFYQYPQCKACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCERCKEGLYNFPICEACNCDS 695
Q +A N G + G C+C + G +CE C E Y + C+
Sbjct: 432 DCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCE-CSEEDYRPSQQDECSPRE 490
Query: 696 HGNIGVSCDD--DGKCQCEKNFGGDRCER-CKEGLYNFPICEECNCNPEGVLKTFAGCGS 752
+ + G+C C + G + C+ ++ + C+ G
Sbjct: 491 GQPVCSQRGECLCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCGD---- 546
Query: 753 LPAGELCECKPKVQGRICDECRPLYWNLKASNPDGCEDCDCYTLGTIGGIKNCNPKSGQC 812
C C G C+ + C G + G C
Sbjct: 547 ------CLCDSDWTGYYCNC------------TTRTDTCMSSNGLLCSG--RGKCECGSC 586
Query: 813 VC 814
VC
Sbjct: 587 VC 588
Score = 47.0 bits (111), Expect = 5e-05
Identities = 55/339 (16%), Positives = 87/339 (25%), Gaps = 60/339 (17%)
Query: 1222 CKPNVIGRRCEMCATGYYG-----FPDCHPCNCPFTAVCDSYTGECICAARVIGKKCDQC 1276
C N + + C G + CP +I + C
Sbjct: 374 CLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDC 433
Query: 1277 EPNTFGYDPIIGCEECNCHPHGVNGTQQCDLFDGSCSCKENIVGRTCDHCVEGHWSFPYC 1336
+ C+ G C C +G C+ C E +
Sbjct: 434 DCA---------CQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCE-CSEEDYRPSQQ 483
Query: 1337 VPCECDLRGTTIDICNQG----TAECYCKKNVYGAAC-DVCKEGTFDIQADNVDGCT--- 1388
C +C+Q +C C + +G C+ F + C+
Sbjct: 484 DECSPR---EGQPVCSQRGECLCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHG 540
Query: 1389 -----RCFC----FGKTTKCSSSNLYRSQLVYCKPCECSGNINRTDPGSCDSVTGECTGC 1439
C C G C++ C S + + G C G C
Sbjct: 541 QCSCGDCLCDSDWTGYYCNCTTR---------TDTCMSSNGLLCSGRGKC--ECGSCVCI 589
Query: 1440 LFNSAGDSCQYCAPGYYGNAVSLKNCVKCNCNPEGVLKTFAGCGSLPAGEL----CECKP 1495
S GD+C+ C P K CV+C G L C E+
Sbjct: 590 QPGSYGDTCEKC-PTCPDACTFKKECVECKKFDRGALHDENTCNRYCRDEIESVKELKDT 648
Query: 1496 KVQGRIC-----DECRPLYWNLKASNPDG----CEDCDC 1525
C D+C + + S+ E+ +C
Sbjct: 649 GKDAVNCTYKNEDDCVVRFQYYEDSSGKSILYVVEEPEC 687
Score = 33.1 bits (75), Expect = 1.2
Identities = 16/123 (13%), Positives = 21/123 (17%), Gaps = 6/123 (4%)
Query: 1203 CDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNCPFTAVCDSYTGEC 1262
C+ G C + C G YG CP EC
Sbjct: 558 CNCTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSYGDTCEKCPTCPDACTFKKECVEC 617
Query: 1263 ICAARVIGKKCDQCEPNTFGYDPIIGCEECNCHPHGVNGTQQCDLFDGSCSCKENIVGRT 1322
+ + NT E C + C
Sbjct: 618 KK-----FDRGALHDENTCNRYCRDEIESVKELKDTGKDAVNCTYKN-EDDCVVRFQYYE 671
Query: 1323 CDH 1325
Sbjct: 672 DSS 674
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 73.2 bits (179), Expect = 5e-13
Identities = 42/258 (16%), Positives = 62/258 (24%), Gaps = 31/258 (12%)
Query: 180 GGVCQECRDNTEGINCHQRVAGYYRPYGKHLNETDVCQPCQCAFHYATGNCAEGTGKCEC 239
GV + + V ++ A + + +CEC
Sbjct: 366 NGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCEC 425
Query: 240 RPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCA 299
+ + CH G L+ C C Y G +C+
Sbjct: 426 ---------------RCRDQSRDRSLCHGKGFLE-------CGICRCDTGYIGKNCECQT 463
Query: 300 QGYYNFPTCSPCECNAVGSL-SDLCEVDSGNCTCRNNFAGRTCDSCADGYYNYPRCTSCQ 358
QG + C + + S L + G C C + + C
Sbjct: 464 QGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYN 523
Query: 359 CAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPAS 418
G GKC C P + C C G N +C G
Sbjct: 524 GQVCGGPGRGLCFCGKCRCHPGFEGSACQ-CERTTEGCLNPRRVECSGRGRCRCN----- 577
Query: 419 GQQCPCKENYAGDHCDTC 436
C C Y C C
Sbjct: 578 --VCECHSGYQLPLCQEC 593
Score = 67.8 bits (165), Expect = 2e-11
Identities = 37/233 (15%), Positives = 51/233 (21%), Gaps = 23/233 (9%)
Query: 216 CQPCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFY 275
C+ G G C C Y +C G C+ N +
Sbjct: 427 CRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSG 486
Query: 276 CEPASGQQCPCKENYAGDHCDTCAQGYYNFPTCSPCECNAVGSLSDLCEVDSGNCTCRNN 335
QC C + + C V G C C
Sbjct: 487 LGDCVCGQCLCHTSDVPGKLIYGQYCECDTINC-ERYNGQVCGGPGRGLCFCGKCRCHPG 545
Query: 336 FAGRTCDSCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFG 395
F G C C +C+ G C CEC Y P C C
Sbjct: 546 FEGSACQ-CERTTEGCLNPRRVECSGR---GRCR--CNVCECHSGYQLPLCQECP----- 594
Query: 396 YPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFPTCSQ 448
P C + + ++ G +C G +
Sbjct: 595 ---GCPSPCGKYIS--------CAECLKFEKGPFGKNCSAACPGLQLSNNPVK 636
Score = 66.3 bits (161), Expect = 7e-11
Identities = 41/214 (19%), Positives = 63/214 (29%), Gaps = 15/214 (7%)
Query: 563 EAGICDKTNGSCLCKEGYTGARCDQCKAGYYGYPDCKLCGCSAVGSSSTACDVSGKCPCL 622
A C + + G+T + C+ G C C
Sbjct: 394 TATECIQEQSFVIRALGFTDIVT--VQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCD 451
Query: 623 VNFGGKTCSQCSPGFYQYPQCKACNCDSHGNI--GVSCDDDGKCQCEKNFGGDRCERCKE 680
+ GK C + G +C D++ I G+ G+C C + + +
Sbjct: 452 TGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQY 511
Query: 681 GLYNFPICEACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCERCKEGLYNFPICEECNCNP 740
+ CE N G G GKC+C F G C+ C+ C+
Sbjct: 512 CECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQ-CERTTEGCLNPRRVECSG 570
Query: 741 EGVLKTFAGCGSLPAGELCECKPKVQGRICDECR 774
G + CEC Q +C EC
Sbjct: 571 RGRCRCNV----------CECHSGYQLPLCQECP 594
Score = 65.5 bits (159), Expect = 1e-10
Identities = 47/353 (13%), Positives = 73/353 (20%), Gaps = 63/353 (17%)
Query: 87 GGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSC 146
G N CD + P + C Q C
Sbjct: 366 NGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCEC 425
Query: 147 EPCNCHGHADKCVYDPMVDEKRLSVDIQGNYEGGGVCQECRDNTEGINCHQRVAGYYRPY 206
+ C ++ G+C+ C G NC + G
Sbjct: 426 RCRDQSRDRSLCHGKGFLE--------------CGICR-CDTGYIGKNCECQTQGR---S 467
Query: 207 GKHLNETDVCQPCQCAFHYATGNCAEGTGKCECRPEYTKPDCNS---CAFGYFGYPNCEP 263
+ L + G G+C C C
Sbjct: 468 SQELEGSCRKDNNSIICS---GLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNG 524
Query: 264 CKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFPTCSPCECNAVGSLSDLC 323
C G G +C C + G C C + EC+ G
Sbjct: 525 QVCGGPGR----GLCFCG-KCRCHPGFEGSACQ-CERTTEGCLNPRRVECSGRGR----- 573
Query: 324 EVDSGNCTCRNNFAGRTCDSCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCECRPEYTK 383
C C + + C C C + +CAE +
Sbjct: 574 -CRCNVCECHSGYQLPLCQEC--------PGCPSPCGKY---ISCAEC---LKFEKGPFG 618
Query: 384 PDCN-SCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDT 435
+C+ +C + C + C Y + D
Sbjct: 619 KNCSAACPGLQLSNNPVKGRTCKERDS------------EGCWVAYTLEQQDG 659
Score = 62.4 bits (151), Expect = 1e-09
Identities = 31/176 (17%), Positives = 50/176 (28%), Gaps = 31/176 (17%)
Query: 565 GICDKTNGSCLCKEGYTGARCDQCKAGYYGYPDCKLCGCSAVGSSSTACDVSGKCPCLVN 624
G G C C G+ G+ C QC+ G + + CS G C C
Sbjct: 531 GRGLCFCGKCRCHPGFEGSAC-QCERTTEGCLNPRRVECSGRGR-----CRCNVCECHSG 584
Query: 625 FGGKTCSQCSPGFYQYPQCKACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCERCKEGLYN 684
+ C +C C + SC + + EK G C
Sbjct: 585 YQLPLCQECP--------GCPSPCGKYI----SCAE--CLKFEKGPFGKNCSAA------ 624
Query: 685 FPICEACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCERCKEGLYNFPICEECNCNP 740
C ++ G +C + C + ++ + Y + E C
Sbjct: 625 ---CPGLQLSNNPVKGRTCKERDSEGCWVAYTLEQQD--GMDRYLIYVDESRECVA 675
Score = 62.0 bits (150), Expect = 1e-09
Identities = 52/317 (16%), Positives = 73/317 (23%), Gaps = 41/317 (12%)
Query: 1166 DVCGKNHFYLDNSTSEFCKKATFSMTISFLHEALPCQCDIDGSKSFECEQFG----GQCQ 1221
V + + + + C+C C G G C+
Sbjct: 390 QVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICR 449
Query: 1222 CKPNVIGRRCEMCATGYYGFPDCHPCNCPFTAVCDSYTGECICAARV--IGKKCDQCEPN 1279
C IG+ CE G C ++ S G+C+C + +
Sbjct: 450 CDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYG 509
Query: 1280 TFGYDPIIGCEECNCHPHGVNGTQQCDLFDGSCSCKENIVGRTCDHCVEGHWSFPYCVPC 1339
+ I CE N G G C G C C G C C
Sbjct: 510 QYCECDTINCERYNGQVCGGPGRGLCF--CGKCRCHPGFEGSACQ-CERTTEGCLNPRRV 566
Query: 1340 ECDLRGTTIDICNQGTAECYCKKNVYGAACDVCKEGTFDIQADNVDGC-TRCFCFGKTTK 1398
EC RG C C C C C GC + C + +
Sbjct: 567 ECSGRGR----CRCNV--CECHSGYQLPLCQEC------------PGCPSPCGKYISCAE 608
Query: 1399 CSSSNLYRSQLVYCKPCECSGNINRTDPGSCDSVTGECTGCLFNSAGDSCQYCAPGYYGN 1458
C + N + PG S DS C Y
Sbjct: 609 CLK----------FEKGPFGKNCSAACPGLQLSNNPVKGRT--CKERDSEG-CWVAYTLE 655
Query: 1459 AVSLKNCVKCNCNPEGV 1475
+ +
Sbjct: 656 QQDGMDRYLIYVDESRE 672
Score = 61.7 bits (149), Expect = 2e-09
Identities = 29/208 (13%), Positives = 44/208 (21%), Gaps = 17/208 (8%)
Query: 234 TGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGD 293
T C T + G P + T + S G
Sbjct: 359 TYDSFCSNGVTHRNQPRGDCD--GVQINVPITFQVKVTATECIQEQSFVIRAL-----GF 411
Query: 294 HCDTCAQGYYNFPTCSPCECNAVGSLSDLCEVDSGNCTCRNNFAGRTCDSCADGYYNYPR 353
Q + ++ G C C + G+ C+ G +
Sbjct: 412 TDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQEL 471
Query: 354 CTSCQCAFHYAT--GNCAEGTGKCECRPEYTKPDCNS---CAFGYFGYPNCEPCKCHMNG 408
SC+ + G G+C C C C G
Sbjct: 472 EGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPG 531
Query: 409 TLDFYCEPASGQQCPCKENYAGDHCDTC 436
G +C C + G C
Sbjct: 532 R----GLCFCG-KCRCHPGFEGSACQCE 554
Score = 57.4 bits (138), Expect = 4e-08
Identities = 44/263 (16%), Positives = 67/263 (25%), Gaps = 31/263 (11%)
Query: 569 KTNGSCLCKEGYTGARCDQCKAGYYGYPDCKLCGCSAVGSSSTACDVSGKCPCLVNFGGK 628
K C G T + G +++ + F
Sbjct: 357 KVTYDSFCSNGVTHRNQPRGD--CDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDI 414
Query: 629 TCSQCSPG---FYQYPQCKACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCERCKEGLYNF 685
Q P + C G + G C+C+ + G CE +G +
Sbjct: 415 VTVQVLPQCECRCRDQSRDRSLCHGKG-----FLECGICRCDTGYIGKNCECQTQGRSSQ 469
Query: 686 PICEACNCDSHGNI--GVSCDDDGKCQCEKNFGGDRCERCKEGLYNFPICEECNCNPEGV 743
+ +C D++ I G+ G+C C D + G Y C+ NC
Sbjct: 470 ELEGSCRKDNNSIICSGLGDCVCGQCLCHT---SDVPGKLIYGQYC--ECDTINCERYNG 524
Query: 744 LKTFAGCGSLPAGELCECKPKVQGRICDECRPLYWNLKASNPDGCEDCDCYTLGTIGGIK 803
L C C P +G C E C G
Sbjct: 525 QVCGGPGRGLCFCGKCRCHPGFEGSACQC------------ERTTEGCLNPRRVECSGRG 572
Query: 804 NCNPKSGQCVCKATAMNRKCDAC 826
C + C C + C C
Sbjct: 573 RC--RCNVCECHSGYQLPLCQEC 593
Score = 55.5 bits (133), Expect = 2e-07
Identities = 35/217 (16%), Positives = 53/217 (24%), Gaps = 39/217 (17%)
Query: 565 GICDKTNGSCLCKEGYTGARCDQCKAGYYGYPDCKLCGCSAVGSSSTACDVS-------G 617
G+ D G CLC + C+ + + C G
Sbjct: 486 GLGDCVCGQCLCHTSDVPGKL-------IYGQYCECDTINCERYNGQVCGGPGRGLCFCG 538
Query: 618 KCPCLVNFGGKTCSQCSPGFYQYPQCKACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCER 677
KC C F G C QC + C G C+C + C+
Sbjct: 539 KCRCHPGFEGSAC-QCERTTEGCLNPRRVECSGRGR-----CRCNVCECHSGYQLPLCQE 592
Query: 678 CKEGLYNFPICEACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCER-CKEGLYNFPICEEC 736
C C + SC + + EK G C C + +
Sbjct: 593 CP--------GCPSPCGKYI----SCAE--CLKFEKGPFGKNCSAACPGLQLSNNPVKGR 638
Query: 737 NCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDEC 773
C GC E + + + +
Sbjct: 639 TCKERDS----EGCWVAYTLEQQDGMDRYLIYVDESR 671
Score = 51.6 bits (123), Expect = 2e-06
Identities = 52/324 (16%), Positives = 74/324 (22%), Gaps = 35/324 (10%)
Query: 1220 CQCKPNVIGRRCEMCATGYYGFPDCHPCNCPFTAVC-DSYTGECICAARVIGKKCDQCEP 1278
C V R TA I A Q P
Sbjct: 362 SFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLP 421
Query: 1279 NTFGYDPIIGCEECNCHPHGVNGTQQCDLFDGSCSCKENIVGRTCDHCVEGHWSFPYCVP 1338
+ CH G L G C C +G+ C+ +G S
Sbjct: 422 QCECRCRDQSRDRSLCHGKG-------FLECGICRCDTGYIGKNCECQTQGRSSQELEGS 474
Query: 1339 CECDLRGTTIDICNQG----TAECYCKKNVYGAACDVCKEGTFDIQADNVDGCTRCFCFG 1394
C D IC+ +C C + + D C G
Sbjct: 475 CRKDNNSI---ICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPG 531
Query: 1395 K----TTKCSSSNLYR----SQLVYCKPCECSGNINRTDPGSCDSVTGECTGCLFNSAGD 1446
+ KC + + C + + G C C C
Sbjct: 532 RGLCFCGKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRC--RCNVCE-CHSGYQLP 588
Query: 1447 SCQYCAPGYYGNAVSLKNCVKCNCNPEGVLKTF--AGCGSLPAGELCECKPKVQGRICDE 1504
CQ C PG +C +C +G A C L + R +
Sbjct: 589 LCQEC-PGCPSPCGKYISCAECLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERDSEG 647
Query: 1505 CRPLYWNLKASNPDGCEDCDCYTL 1528
C Y + + D Y +
Sbjct: 648 CWVAYT------LEQQDGMDRYLI 665
Score = 34.7 bits (79), Expect = 0.38
Identities = 24/167 (14%), Positives = 33/167 (19%), Gaps = 50/167 (29%)
Query: 1660 QCQPGYHGNATQGTMADCLICACPLPITSNNFASGCDVSEDGCHMNGTLNFYCEPTSGQQ 1719
+C PG+ G+A C C + S G
Sbjct: 541 RCHPGFEGSA----------CQCERTTEGCLNPRRVECSGRGRCRCNV------------ 578
Query: 1720 CPCKENYAGDHCD---TCAQACNCHGHADKCVYDPMVDEKRLSVDIQGNYEGGGVCQECR 1776
C C Y C C C + C C +
Sbjct: 579 CECHSGYQLPLCQECPGCPSPCGKYIS---CAE----------------------CLKFE 613
Query: 1777 DNTEGINCHQCVAGYYRPYGKHLNETDVCQRQCLCQPRVTGQTCNQP 1823
G NC G T + C T + +
Sbjct: 614 KGPFGKNCSAACPGLQLSNNPVKGRTCKERDSEGCWVAYTLEQQDGM 660
>1skz_A Antistasin; factor XA inhibitor, serine protease inhibitor,
thrombosis; 1.90A {Haementeria officinalis} SCOP:
g.3.15.1 g.3.15.1
Length = 119
Score = 57.4 bits (138), Expect = 9e-10
Identities = 25/117 (21%), Positives = 32/117 (27%), Gaps = 23/117 (19%)
Query: 1198 ALPCQCDIDGSKS-FECEQFGGQCQCKPNVIGRRCEMCATGYYGFPD----------CHP 1246
C+ G C +C C R C G+
Sbjct: 3 PFGPGCEEAGCPEGSACNIITDRCTCSG---VRCRVHCPHGFQRSRYGCEFCKCRLEPMK 59
Query: 1247 CNC-----PFTAVCDSYTGECICAARVIGKKCDQCEPNTFGYDPIIGCEECNCHPHG 1298
C P +C T +C C I C + PN D +GCE C C P
Sbjct: 60 ATCDISECPEGMMCSRLTNKCDC---KIDINCRKTCPNGLKRDK-LGCEYCECRPKR 112
Score = 54.7 bits (131), Expect = 8e-09
Identities = 19/114 (16%), Positives = 27/114 (23%), Gaps = 15/114 (13%)
Query: 1242 PDCHPCNCPFTAVCDSYTGECICAARVIGKKCDQCEPNTFGYDP-------IIGCEECNC 1294
P C CP + C+ T C C+ + C + + C
Sbjct: 6 PGCEEAGCPEGSACNIITDRCTCSG---VRCRVHCPHGFQRSRYGCEFCKCRLEPMKATC 62
Query: 1295 HPHGVNGTQQCDLFDGSCSCKENIVGRTCDHCVEGHWSFPY--CVPCECDLRGT 1346
C C CK + C C CEC +
Sbjct: 63 DISECPEGMMCSRLTNKCDCK---IDINCRKTCPNGLKRDKLGCEYCECRPKRK 113
Score = 53.1 bits (127), Expect = 3e-08
Identities = 22/116 (18%), Positives = 32/116 (27%), Gaps = 20/116 (17%)
Query: 1288 GCEECNCHPHGVNGTQQCDLFDGSCSCKENIVGRTCDHCVEGHWSFPY----------CV 1337
C G C++ C+C R HC G Y +
Sbjct: 2 DPFGPGCEEAGCPEGSACNIITDRCTCSG---VRCRVHCPHGFQRSRYGCEFCKCRLEPM 58
Query: 1338 PCECDLRGTTID-ICNQGTAECYCKKNVYGAACDVCKEGTFDIQADNVDGCTRCFC 1392
CD+ +C++ T +C CK C + GC C C
Sbjct: 59 KATCDISECPEGMMCSRLTNKCDCKI---DINCRKTCPNGL---KRDKLGCEYCEC 108
Score = 48.5 bits (115), Expect = 1e-06
Identities = 15/114 (13%), Positives = 26/114 (22%), Gaps = 21/114 (18%)
Query: 260 NCEPCKCHMNGTLD-FYCEPASGQQCPCKENYAGDHCDTCAQGYYNFPT----------C 308
+ C G + C + + C C C G+
Sbjct: 2 DPFGPGCEEAGCPEGSACNIITDR-CTCS---GVRCRVHCPHGFQRSRYGCEFCKCRLEP 57
Query: 309 SPCECNAVGSLSD-LCEVDSGNCTCRNNFAGRTCDSCADGYYNYPR--CTSCQC 359
C+ +C + C C+ C + C C+C
Sbjct: 58 MKATCDISECPEGMMCSRLTNKCDCK---IDINCRKTCPNGLKRDKLGCEYCEC 108
Score = 48.1 bits (114), Expect = 1e-06
Identities = 17/116 (14%), Positives = 28/116 (24%), Gaps = 21/116 (18%)
Query: 555 CNCDIRGTEAG-ICDKTNGSCLCKEGYTGARCDQCKAGYYGYPD----------CKLCGC 603
C+ G G C+ C C C G+ C
Sbjct: 6 PGCEEAGCPEGSACNIITDRCTCSGV---RCRVHCPHGFQRSRYGCEFCKCRLEPMKATC 62
Query: 604 SAVGS--SSTACDVSGKCPCLVNFGGKTCSQCSPGFYQYPQ--CKACNCDSHGNIG 655
++ KC C + C + P + + C+ C C +
Sbjct: 63 DISECPEGMMCSRLTNKCDCKI---DINCRKTCPNGLKRDKLGCEYCECRPKRKLI 115
Score = 48.1 bits (114), Expect = 2e-06
Identities = 18/122 (14%), Positives = 29/122 (23%), Gaps = 18/122 (14%)
Query: 1463 KNCVKCNCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDECRPLYWNLKASN-----P 1517
++ C G G + C C R C + +
Sbjct: 1 EDPFGPGCEEAG---CPEGSACNIITDRCTCSG---VRCRVHCPHGFQRSRYGCEFCKCR 54
Query: 1518 DGCEDCDCYTLGTIGGIKNCNPKSGQCVCKATAMNRKCDACVDGTYALQDNNLFGCTECA 1577
C G+ C+ + +C CK + C + GC C
Sbjct: 55 LEPMKATCDISECPEGMM-CSRLTNKCDCKI---DINCRKTCPNGLKR---DKLGCEYCE 107
Query: 1578 CD 1579
C
Sbjct: 108 CR 109
Score = 47.7 bits (113), Expect = 2e-06
Identities = 18/120 (15%), Positives = 27/120 (22%), Gaps = 18/120 (15%)
Query: 733 CEECNCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDECRPLYWNLKASN-----PDG 787
C G G + C C R C + +
Sbjct: 3 PFGPGCEEAG---CPEGSACNIITDRCTCSG---VRCRVHCPHGFQRSRYGCEFCKCRLE 56
Query: 788 CEDCDCYTLGTIGGIKNCNPKSGQCVCKATAMNRKCDACMDGTYALQDNNLFGCTECACD 847
C G+ C+ + +C CK + C + GC C C
Sbjct: 57 PMKATCDISECPEGMM-CSRLTNKCDCKI---DINCRKTCPNGLKR---DKLGCEYCECR 109
Score = 47.0 bits (111), Expect = 4e-06
Identities = 21/119 (17%), Positives = 29/119 (24%), Gaps = 21/119 (17%)
Query: 307 TCSPCECNAVGSLSD-LCEVDSGNCTCRNNFAGRTCDSCADGYYNYPR----------CT 355
C G C + + CTC R C G+
Sbjct: 2 DPFGPGCEEAGCPEGSACNIITDRCTCS---GVRCRVHCPHGFQRSRYGCEFCKCRLEPM 58
Query: 356 SCQCAFHYATGN--CAEGTGKCECRPEYTKPDCNSCAFGYFGYPN--CEPCKCHMNGTL 410
C C+ T KC+C+ + C CE C+C L
Sbjct: 59 KATCDISECPEGMMCSRLTNKCDCKIDIN---CRKTCPNGLKRDKLGCEYCECRPKRKL 114
Score = 44.3 bits (104), Expect = 3e-05
Identities = 14/76 (18%), Positives = 20/76 (26%), Gaps = 9/76 (11%)
Query: 1518 DGCEDCDCYTLGTIGGIKNCNPKSGQCVCKATAMNRKCDACVDGTYALQDNNLF-----G 1572
+ C G G CN + +C C R C G + F
Sbjct: 1 EDPFGPGCEEAGCPEG-SACNIITDRCTCSG---VRCRVHCPHGFQRSRYGCEFCKCRLE 56
Query: 1573 CTECACDIGGSINNLC 1588
+ CDI +
Sbjct: 57 PMKATCDISECPEGMM 72
Score = 44.3 bits (104), Expect = 3e-05
Identities = 14/76 (18%), Positives = 20/76 (26%), Gaps = 9/76 (11%)
Query: 786 DGCEDCDCYTLGTIGGIKNCNPKSGQCVCKATAMNRKCDACMDGTYALQDNNLF-----G 840
+ C G G CN + +C C R C G + F
Sbjct: 1 EDPFGPGCEEAGCPEG-SACNIITDRCTCSG---VRCRVHCPHGFQRSRYGCEFCKCRLE 56
Query: 841 CTECACDIGGSINNLC 856
+ CDI +
Sbjct: 57 PMKATCDISECPEGMM 72
Score = 43.5 bits (102), Expect = 5e-05
Identities = 23/118 (19%), Positives = 31/118 (26%), Gaps = 22/118 (18%)
Query: 643 CKACNCDSHGNI-GVSCD-DDGKCQCEKNFGGDRCERCKEGLYNFPI----------CEA 690
C+ G G +C+ +C C G C G
Sbjct: 3 PFGPGCEEAGCPEGSACNIITDRCTCS---GVRCRVHCPHGFQRSRYGCEFCKCRLEPMK 59
Query: 691 CNCDSHGNI-GVSCDDD-GKCQCEKNFGGDRCERCKEGLYNFPI--CEECNCNPEGVL 744
CD G+ C KC C+ C + CE C C P+ L
Sbjct: 60 ATCDISECPEGMMCSRLTNKCDCKI---DINCRKTCPNGLKRDKLGCEYCECRPKRKL 114
Score = 43.1 bits (101), Expect = 8e-05
Identities = 24/120 (20%), Positives = 35/120 (29%), Gaps = 22/120 (18%)
Query: 597 DCKLCGCSAVGS-SSTACD-VSGKCPCLVNFGGKTCSQCSPGFYQYPQ----------CK 644
D GC G +AC+ ++ +C C G + C GF +
Sbjct: 2 DPFGPGCEEAGCPEGSACNIITDRCTCS---GVRCRVHCPHGFQRSRYGCEFCKCRLEPM 58
Query: 645 ACNCDSHGNI-GVSCDDD-GKCQCEKNFGGDRCERCKEGLYNFPI--CEACNCDSHGNIG 700
CD G+ C KC C+ C + CE C C +
Sbjct: 59 KATCDISECPEGMMCSRLTNKCDCKI---DINCRKTCPNGLKRDKLGCEYCECRPKRKLI 115
Score = 42.3 bits (99), Expect = 1e-04
Identities = 18/113 (15%), Positives = 26/113 (23%), Gaps = 18/113 (15%)
Query: 219 CQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPN----------CEPCKCHM 268
C+ A C T +C C C G+ C +
Sbjct: 8 CEEAGCPEGSACNIITDRCTCSGVRC---RVHCPHGFQRSRYGCEFCKCRLEPMKATCDI 64
Query: 269 NGTLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFPT--CSPCECNAVGSL 319
+ + +C CK +C C CEC L
Sbjct: 65 SECPEGMMCSRLTNKCDCKI---DINCRKTCPNGLKRDKLGCEYCECRPKRKL 114
Score = 40.0 bits (93), Expect = 8e-04
Identities = 21/118 (17%), Positives = 32/118 (27%), Gaps = 24/118 (20%)
Query: 688 CEACNCDSHGNI-GVSCD-DDGKCQCEKNFGGDRCERCKEGLYNFPI----------CEE 735
C+ G G +C+ +C C G C G +
Sbjct: 3 PFGPGCEEAGCPEGSACNIITDRCTCS---GVRCRVHCPHGFQRSRYGCEFCKCRLEPMK 59
Query: 736 CNCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDECRPLYWNLKASNPDGCEDCDC 793
C+ G C+CK + C + P + GCE C+C
Sbjct: 60 ATCDISE---CPEGMMCSRLTNKCDCKIDIN---CRKTCPNGLKR---DKLGCEYCEC 108
Score = 39.6 bits (92), Expect = 0.001
Identities = 21/120 (17%), Positives = 34/120 (28%), Gaps = 20/120 (16%)
Query: 1412 CKPCECSGNINRTDPGSCDSVTGECTGCLFNSAGDSCQYCAPGYYG------NAVSLKNC 1465
C + +C+ +T CT S +C G+
Sbjct: 3 PFGPGCEEA-GCPEGSACNIITDRCTC----SGVRCRVHCPHGFQRSRYGCEFCKCRLEP 57
Query: 1466 VKCNCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDECRPLYWNLKASNPDGCEDCDC 1525
+K C+ G C+CK + C + P + GCE C+C
Sbjct: 58 MKATCDISE---CPEGMMCSRLTNKCDCKIDIN---CRKTCPNGLKR---DKLGCEYCEC 108
Score = 35.8 bits (82), Expect = 0.031
Identities = 26/142 (18%), Positives = 36/142 (25%), Gaps = 31/142 (21%)
Query: 1336 CVPCECDLRGTTID-ICNQGTAECYCKKNVYGAACDVCKEGTFDIQADNVDGCTRCFCFG 1394
C+ G CN T C C C G + GC C C
Sbjct: 3 PFGPGCEEAGCPEGSACNIITDRCTCSGVR---CRVHCPHGFQRSRY----GCEFCKCRL 55
Query: 1395 KTTKCSSSNLYRSQLVYCKPCECSGNINRTDPGSCDSVTGECTGCLFNSAGDSCQYCAPG 1454
+ K + C+ S C +T +C +C+ P
Sbjct: 56 EPMKAT--------------CDISECPEGM---MCSRLTNKC----DCKIDINCRKTCPN 94
Query: 1455 YYGNAVSLKNCVKCNCNPEGVL 1476
C C C P+ L
Sbjct: 95 GLKR--DKLGCEYCECRPKRKL 114
Score = 35.0 bits (80), Expect = 0.046
Identities = 13/99 (13%), Positives = 21/99 (21%), Gaps = 16/99 (16%)
Query: 357 CQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPN----------CEPCKCHM 406
C+ A C T +C C C G+ C +
Sbjct: 8 CEEAGCPEGSACNIITDRCTCSGVRC---RVHCPHGFQRSRYGCEFCKCRLEPMKATCDI 64
Query: 407 NGTLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFPT 445
+ + +C CK +C
Sbjct: 65 SECPEGMMCSRLTNKCDCKI---DINCRKTCPNGLKRDK 100
Score = 28.5 bits (63), Expect = 8.3
Identities = 12/61 (19%), Positives = 17/61 (27%), Gaps = 7/61 (11%)
Query: 216 CQPCQCAFHYATGN--CAEGTGKCECRPEYTKPDCNSCAFGYFGYPN--CEPCKCHMNGT 271
C C+ T KC+C+ + C CE C+C
Sbjct: 57 PMKATCDISECPEGMMCSRLTNKCDCKIDIN---CRKTCPNGLKRDKLGCEYCECRPKRK 113
Query: 272 L 272
L
Sbjct: 114 L 114
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 59.9 bits (145), Expect = 3e-09
Identities = 45/178 (25%), Positives = 69/178 (38%), Gaps = 48/178 (26%)
Query: 565 GICDKTNGSCLCKEGYTGARCDQ--------------------CKAGYYGYPDCKLCGCS 604
G C++ C C +G+ G C++ C G+YG +C CS
Sbjct: 159 GFCNE-RRICECPDGFHGPHCEKALCTPRCMNGGLCVTPGFCICPPGFYG-VNCDKANCS 216
Query: 605 AVGSSSTACDVSGKCPCLVNFGGKTCSQCSPGFYQYPQCKACNCDSHGNIGVSCDDDGKC 664
+ C GKC C G+ C + +C C + G C KC
Sbjct: 217 TTCFNGGTCFYPGKCICPPGLEGEQC--------EISKC-PQPCRNGG----KCIGKSKC 263
Query: 665 QCEKNFGGDRCERCKEGLYNFPICEACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCER 722
+C K + GD C + P+CE C +HG +C + KCQC++ + G C +
Sbjct: 264 KCSKGYQGDLCSK--------PVCE-PGCGAHG----TCHEPNKCQCQEGWHGRHCNK 308
Score = 49.1 bits (117), Expect = 7e-06
Identities = 43/208 (20%), Positives = 57/208 (27%), Gaps = 58/208 (27%)
Query: 228 GNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCK 287
G C E CEC + P C +C G C + C C
Sbjct: 159 GFCNER-RICECPDGFHGPHCEKA---------LCTPRCMNGGL----CV--TPGFCICP 202
Query: 288 ENYAGDHCDTCAQGYYNFPTCSPCECNAVGSLSDLCEVDSGNCTCRNNFAGRTCDSCADG 347
+ G +CD C G+ C G C C G C+
Sbjct: 203 PGFYGVNCDKA---------NCSTTCFNGGT----C-FYPGKCICPPGLEGEQCEIS--- 245
Query: 348 YYNYPRCTSCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMN 407
C G C G KC+C Y C+ C +
Sbjct: 246 ------KCPQPCRNG---GKCI-GKSKCKCSKGYQGDLCSK---------PVCEPGCGAH 286
Query: 408 GTLDFYCEPASGQQCPCKENYAGDHCDT 435
GT C +C C+E + G HC+
Sbjct: 287 GT----CH--EPNKCQCQEGWHGRHCNK 308
Score = 47.9 bits (114), Expect = 2e-05
Identities = 21/135 (15%), Positives = 34/135 (25%), Gaps = 22/135 (16%)
Query: 597 DCKLCGCSAVGSSSTACDVSGKCPCLVNFGGKTCS--------QCSPGFYQYPQCKACNC 648
+ ++V C + + C+ C
Sbjct: 93 LGTVPHKASVVQVGFPCLGKQDGVAAFEVDVIVMNSEGNTILKTPQNAIFF-KTCQQAEC 151
Query: 649 DSHGNIGVSCDDDGKCQCEKNFGGDRCERCKEGLYNFPICEACNCDSHGNIGVSCDDDGK 708
G C++ C+C F G CE+ C + G C G
Sbjct: 152 PGGCRNGGFCNERRICECPDGFHGPHCEKA---------LCTPRCMNGGL----CVTPGF 198
Query: 709 CQCEKNFGGDRCERC 723
C C F G C++
Sbjct: 199 CICPPGFYGVNCDKA 213
Score = 46.0 bits (109), Expect = 7e-05
Identities = 30/147 (20%), Positives = 47/147 (31%), Gaps = 40/147 (27%)
Query: 572 GSCLCKEGYTGARCDQ--------------------CKAGYYGYPDCKLCGCSAVGSSST 611
G C+C G+ G CD+ C G G C++ C +
Sbjct: 197 GFCICPPGFYGVNCDKANCSTTCFNGGTCFYPGKCICPPGLEG-EQCEISKCPQPCRNGG 255
Query: 612 ACDVSGKCPCLVNFGGKTCSQCSPGFYQYPQCKACNCDSHGNIGVSCDDDGKCQCEKNFG 671
C KC C + G CS+ C +HG +C + KCQC++ +
Sbjct: 256 KCIGKSKCKCSKGYQGDLCSK---------PVCEPGCGAHG----TCHEPNKCQCQEGWH 302
Query: 672 GDRCERCKEGLYNFPICEACNCDSHGN 698
G C + + H +
Sbjct: 303 GRHCNK------RYEASLIGTKHHHHH 323
Score = 41.4 bits (97), Expect = 0.002
Identities = 29/223 (13%), Positives = 46/223 (20%), Gaps = 66/223 (29%)
Query: 215 VCQPCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDF 274
V P + C + + + G
Sbjct: 88 VNVPLLGTV---PHKASVVQVGFPCLGKQDGVAAF----------EVDVIVMNSEG---- 130
Query: 275 YCEPASGQQCPCKENYAGDHCDTCAQGYYNFPTCS-PCECNAVGSLSDLCEVDSGNCTCR 333
+ + C C C C + C C
Sbjct: 131 -----NTILKTPQNAIFFKTCQQ--------AECPGGCRNGGF------C-NERRICECP 170
Query: 334 NNFAGRTCDSCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGY 393
+ F G C+ + +C G C G C C P + +C+
Sbjct: 171 DGFHGPHCEKA---------LCTPRCMNG---GLCVT-PGFCICPPGFYGVNCDKA---- 213
Query: 394 FGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTC 436
C GT C +C C G+ C+
Sbjct: 214 -----NCSTTCFNGGT----CF--YPGKCICPPGLEGEQCEIS 245
Score = 31.4 bits (71), Expect = 2.7
Identities = 37/218 (16%), Positives = 58/218 (26%), Gaps = 49/218 (22%)
Query: 1163 EFIDVCGKNHFYLDNSTSEFCKKATFSMTISFLHEALPCQCDIDGSKSFEC-------EQ 1215
EF+ + + + + T T S + PC DG +FE E
Sbjct: 71 EFLSLRSLDKGIMADPTVNVPLLGTVPHKASVVQVGFPCLGKQDGVAAFEVDVIVMNSEG 130
Query: 1216 FGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNCPFTAVCDSYTGECICAARVIGKKCDQ 1275
+ + + C+ +C P C C+ C C G C++
Sbjct: 131 NTILKTPQNAIFFKTCQQ--------AEC-PGGCRNGGFCNE-RRICECPDGFHGPHCEK 180
Query: 1276 CEPNTFGYDPIIGCEECNCHPHGVNGTQQCDLFDGSCSCKENIVGRTCDHCVEGHWSFPY 1335
C G+ + G C C G CD
Sbjct: 181 A------------LCTPRCMNGGL------CVTPGFCICPPGFYGVNCDKA--------- 213
Query: 1336 CVPCECDLRGTTIDICNQGTAECYCKKNVYGAACDVCK 1373
C GT +C C + G C++ K
Sbjct: 214 NCSTTCFNGGTCFY-----PGKCICPPGLEGEQCEISK 246
Score = 31.4 bits (71), Expect = 3.2
Identities = 33/162 (20%), Positives = 49/162 (30%), Gaps = 40/162 (24%)
Query: 212 ETDVCQPCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGT 271
E +C +C G C G C C P + +C+ C GT
Sbjct: 179 EKALC-TPRCMNG---GLCVT-PGFCICPPGFYGVNCDKA---------NCSTTCFNGGT 224
Query: 272 LDFYCEPASGQQCPCKENYAGDHCDT--CAQGYYNFPTCSP---CECNAVGSLSDLCE-- 324
C +C C G+ C+ C Q N C C+C+ G DLC
Sbjct: 225 ----CF--YPGKCICPPGLEGEQCEISKCPQPCRNGGKCIGKSKCKCSK-GYQGDLCSKP 277
Query: 325 ------------VDSGNCTCRNNFAGRTCDSCADGYYNYPRC 354
+ C C+ + GR C+ + +
Sbjct: 278 VCEPGCGAHGTCHEPNKCQCQEGWHGRHCNKRYEASLIGTKH 319
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 53.1 bits (128), Expect = 8e-08
Identities = 33/151 (21%), Positives = 52/151 (34%), Gaps = 38/151 (25%)
Query: 571 NGSCLCKEGYTGARCDQCKAGYYGYPDCKLCGCSAVGSSSTACDVSGKCPCLVNFGGKTC 630
+ C + Y G C++ C ACD +G C+ + G C
Sbjct: 16 RSAVTCDDYYYGFGCNK------------FCRPRDDFFGHYACDQNGNKTCMEGWMGPEC 63
Query: 631 SQCSPGFYQYPQCKACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCERCKEGLYNFPICEA 690
++ C+ HG SC G C+C+ + G C+ C
Sbjct: 64 NR--------AICRQGCSPKHG----SCKLPGDCRCQYGWQGLYCD----------KCIP 101
Query: 691 CNCDSHGNIGVSCDDDGKCQCEKNFGGDRCE 721
HG C++ +C CE N+GG C+
Sbjct: 102 HPGCVHG----ICNEPWQCLCETNWGGQLCD 128
Score = 50.1 bits (120), Expect = 7e-07
Identities = 24/121 (19%), Positives = 38/121 (31%), Gaps = 24/121 (19%)
Query: 603 CSAVGSSSTACDVSGKCPCLVNFGGKTCSQCSPGFYQYPQCKACNCDSHGNIGVSCDDDG 662
S + + C + G C++ C +CD +G
Sbjct: 3 GSHHHHHHGSIEGRSAVTCDDYYYGFGCNK------------FCRPRDDFFGHYACDQNG 50
Query: 663 KCQCEKNFGGDRCERCKEGLYNFPICEACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCER 722
C + + G C R IC HG SC G C+C+ + G C++
Sbjct: 51 NKTCMEGWMGPECNR--------AICRQGCSPKHG----SCKLPGDCRCQYGWQGLYCDK 98
Query: 723 C 723
C
Sbjct: 99 C 99
Score = 48.5 bits (116), Expect = 2e-06
Identities = 39/158 (24%), Positives = 59/158 (37%), Gaps = 33/158 (20%)
Query: 565 GICDKTNGSCLCKEGYTGARCDQCKAGYYGYPDCKLCGCSAVGSSSTACDVSGKCPCLVN 624
NG+ C EG+ G C++ C+ GCS S C + G C C
Sbjct: 43 HYACDQNGNKTCMEGWMGPECNR--------AICR-QGCSPKHGS---CKLPGDCRCQYG 90
Query: 625 FGGKTCSQCSPGFYQYPQCKACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCERCKEGLYN 684
+ G C +C P HG C++ +C CE N+GG C++ +
Sbjct: 91 WQGLYCDKCIPH----------PGCVHG----ICNEPWQCLCETNWGGQLCDK------D 130
Query: 685 FPICEACN-CDSHGNIGVSCDDDGKCQCEKNFGGDRCE 721
C C + G + D +C C + + G CE
Sbjct: 131 LNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCE 168
Score = 44.3 bits (105), Expect = 8e-05
Identities = 26/153 (16%), Positives = 40/153 (26%), Gaps = 41/153 (26%)
Query: 283 QCPCKENYAGDHCDTCAQGYYNFPTCSPCECNAVGSLSDLCEVDSGNCTCRNNFAGRTCD 342
C + Y G C+ F +GN TC + G C+
Sbjct: 18 AVTCDDYYYGFGCNK-------FCRPRDDFFGHY------ACDQNGNKTCMEGWMGPECN 64
Query: 343 SCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPC 402
R + G C C+ + C+ C P
Sbjct: 65 R------AICRQGCSPK------HGSCKLPGDCRCQYGWQGLYCDKCI----------PH 102
Query: 403 KCHMNGTLDFYCEPASGQQCPCKENYAGDHCDT 435
++G + QC C+ N+ G CD
Sbjct: 103 PGCVHGICN------EPWQCLCETNWGGQLCDK 129
Score = 41.2 bits (97), Expect = 7e-04
Identities = 39/205 (19%), Positives = 53/205 (25%), Gaps = 52/205 (25%)
Query: 232 EGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYA 291
EG C Y CN C P Y +G C E +
Sbjct: 14 EGRSAVTCDDYYYGFGCN---------KFCRPRDDFFGH----YACDQNGN-KTCMEGWM 59
Query: 292 GDHCDTCAQGYYNFPTCSPCECNAVGSLSDLCEVDSGNCTCRNNFAGRTCDSCADGYYNY 351
G C+ + C G+C C+ + G CD C +
Sbjct: 60 GPECNR------AICRQGCSPKHGS------C-KLPGDCRCQYGWQGLYCDKCI----PH 102
Query: 352 PRCTSCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLD 411
P C C +C C + C+ C GT
Sbjct: 103 PGCVHGIC----------NEPWQCLCETNWGGQLCDKDLN-----YCGTHQPCLNGGT-- 145
Query: 412 FYCE--PASGQQCPCKENYAGDHCD 434
C QC C E Y+G +C+
Sbjct: 146 --CSNTGPDKYQCSCPEGYSGPNCE 168
Score = 37.7 bits (88), Expect = 0.011
Identities = 19/111 (17%), Positives = 29/111 (26%), Gaps = 26/111 (23%)
Query: 1217 GGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNCPFTAVCDSYTGECICAARVIGKKCDQC 1276
C G C C P + F G C +G +C++
Sbjct: 16 RSAVTCDDYYYGFGCN---------KFCRPRDDFFGHYACDQNGNKTCMEGWMGPECNR- 65
Query: 1277 EPNTFGYDPIIGCEECNCHPHGVNGTQQCDLFDGSCSCKENIVGRTCDHCV 1327
C +G+ + G C C+ G CD C+
Sbjct: 66 -------------AICRQGCSPKHGSCKL---PGDCRCQYGWQGLYCDKCI 100
Score = 33.5 bits (77), Expect = 0.29
Identities = 20/113 (17%), Positives = 32/113 (28%), Gaps = 26/113 (23%)
Query: 325 VDSGNCTCRNNFAGRTCDSCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCECRPEYTKP 384
TC + + G C+ C F + G C + P
Sbjct: 14 EGRSAVTCDDYYYGFGCN---------KFCRPRDDFFG---HYACDQNGNKTCMEGWMGP 61
Query: 385 DCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCA 437
+CN C +G+ C+ C C+ + G +CD C
Sbjct: 62 ECNR--------AICRQGCSPKHGS----CK--LPGDCRCQYGWQGLYCDKCI 100
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 44.1 bits (103), Expect = 1e-04
Identities = 17/79 (21%), Positives = 24/79 (30%), Gaps = 5/79 (6%)
Query: 601 CGCSAVGSSSTACDVSGKCPCLVNFGGKTCSQCSPGFYQYPQCKACNCDSHGNIGVSCDD 660
C G ++ DV G T + C+ C G C++
Sbjct: 109 CLGXQDGVAAFEVDVIVMNS-----EGNTILXTPQNAIFFKTCQQAECPGGCRNGGFCNE 163
Query: 661 DGKCQCEKNFGGDRCERCK 679
C+C F G CE K
Sbjct: 164 RRICECPDGFHGPHCEGTK 182
Score = 43.4 bits (101), Expect = 2e-04
Identities = 14/83 (16%), Positives = 21/83 (25%), Gaps = 1/83 (1%)
Query: 643 CKACNCDSHGNIGVSCDDDGKCQCE-KNFGGDRCERCKEGLYNFPICEACNCDSHGNIGV 701
+ N G+ + F C+ C G
Sbjct: 100 ASVVQVGFPCLGXQDGVAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGG 159
Query: 702 SCDDDGKCQCEKNFGGDRCERCK 724
C++ C+C F G CE K
Sbjct: 160 FCNERRICECPDGFHGPHCEGTK 182
Score = 38.0 bits (87), Expect = 0.015
Identities = 10/82 (12%), Positives = 15/82 (18%)
Query: 553 QVCNCDIRGTEAGICDKTNGSCLCKEGYTGARCDQCKAGYYGYPDCKLCGCSAVGSSSTA 612
V + G + C+ C +
Sbjct: 101 SVVQVGFPCLGXQDGVAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGF 160
Query: 613 CDVSGKCPCLVNFGGKTCSQCS 634
C+ C C F G C
Sbjct: 161 CNERRICECPDGFHGPHCEGTK 182
Score = 31.4 bits (70), Expect = 1.9
Identities = 13/86 (15%), Positives = 18/86 (20%), Gaps = 6/86 (6%)
Query: 304 NFPTCSPCECNAVGSLSDLCEVDSGNCTCRNNFAGRTCDSCADGYYNYPRCTSCQCAFHY 363
PC G + +V T + C +C
Sbjct: 102 VVQVGFPCLGXQDGVAAFEVDV---IVMNSEGN---TILXTPQNAIFFKTCQQAECPGGC 155
Query: 364 ATGNCAEGTGKCECRPEYTKPDCNSC 389
G CEC + P C
Sbjct: 156 RNGGFCNERRICECPDGFHGPHCEGT 181
Score = 30.3 bits (67), Expect = 3.8
Identities = 12/116 (10%), Positives = 24/116 (20%), Gaps = 5/116 (4%)
Query: 321 DLCEVDSGNCTCRNNFAGRTCDSCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCECRPE 380
+ + S + + + C E
Sbjct: 71 EFLSLRSLDXGIMADPTVNVPLLGTVPHXASVVQVGFPCLGXQDGVAAFEVDVIVMNSEG 130
Query: 381 YTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTC 436
T + C+ +C +C C C + + G HC+
Sbjct: 131 NT---ILXTPQNAIFFKTCQQAECPGGCRNGGFCNERR--ICECPDGFHGPHCEGT 181
Score = 30.3 bits (67), Expect = 4.2
Identities = 20/123 (16%), Positives = 26/123 (21%), Gaps = 16/123 (13%)
Query: 241 PEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQ 300
P N G + A N G+ Q
Sbjct: 81 GIMADPTVNVPLLGTVPHXASVVQ-VGFPCLGXQDGVAAFEVDVIV-MNSEGNTILXTPQ 138
Query: 301 GYYNFPTCSPCECNAVGSLSDLCEVDSGNCTCRNNFAGRTCDSCADGYYNYPRCTSCQCA 360
F TC EC C + C C + F G P C +
Sbjct: 139 NAIFFKTCQQAECPGGCRNGGFC-NERRICECPDGFHG-------------PHCEGTKHH 184
Query: 361 FHY 363
H+
Sbjct: 185 HHH 187
Score = 30.3 bits (67), Expect = 5.0
Identities = 12/87 (13%), Positives = 20/87 (22%), Gaps = 5/87 (5%)
Query: 212 ETDVCQPCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGT 271
+ V C E T + C+ +C
Sbjct: 100 ASVVQVGFPCLGXQDGVAAFEVDVIVMNSEGNT---ILXTPQNAIFFKTCQQAECPGGCR 156
Query: 272 LDFYCEPASGQQCPCKENYAGDHCDTC 298
+C C C + + G HC+
Sbjct: 157 NGGFCNERR--ICECPDGFHGPHCEGT 181
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 45.3 bits (106), Expect = 2e-04
Identities = 27/192 (14%), Positives = 44/192 (22%), Gaps = 7/192 (3%)
Query: 202 YYRPYGKHLNETDVCQPCQCAFHYATGNCAEGTGKCEC-RPEYTKPDCNSCAFGYFGYPN 260
+ D+C G C + + C + +
Sbjct: 145 IVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAE 204
Query: 261 CEPCKCHMNGTLDFYCEPASGQQC-PCKENYAGDHC-DTCAQGYYNFPTCSPCECNAVGS 318
C G +P +C C+ Y C +TC YY+F +
Sbjct: 205 GLCCHSECLGN---CSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQD 261
Query: 319 LSDLCEVDSGNCTCRNNFAGRTC-DSCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCEC 377
L C+ + C C GY C C G+
Sbjct: 262 LHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTI 321
Query: 378 RPEYTKPDCNSC 389
+ + C
Sbjct: 322 DSVTSAQELRGC 333
Score = 41.4 bits (96), Expect = 0.003
Identities = 34/201 (16%), Positives = 49/201 (24%), Gaps = 27/201 (13%)
Query: 630 CSQCSPGFYQYPQCKACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCERCKEGLYNFPICE 689
C C A +G C CQ C +
Sbjct: 156 GDICPGTAKGKTNCPATVI--NGQFVERCWTHSHCQKV-------CPTICKSHGCTAEGL 206
Query: 690 ACNCDSHGNIGVSCDDDGKCQ-CEKNFGGDRC-ERCKEGLYNFPICEECNCNPEGVLKTF 747
C+ + GN DD KC C + RC E C Y+F N +
Sbjct: 207 CCHSECLGN-CSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFC-----Q 260
Query: 748 AGCGSLPAGELCECKPKV--QGRICDECRPLYWNLKASNPDGCEDCDCYTLGTIGGIKNC 805
C V + EC Y ++ C C K C
Sbjct: 261 DLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNL--LCTPCL------GPCPKVC 312
Query: 806 NPKSGQCVCKATAMNRKCDAC 826
+ G+ + ++ C
Sbjct: 313 HLLEGEKTIDSVTSAQELRGC 333
Score = 40.7 bits (94), Expect = 0.005
Identities = 27/172 (15%), Positives = 40/172 (23%), Gaps = 20/172 (11%)
Query: 576 CKEGYTGARCDQCKAGYYGYPDCKLCGCSAVGSSSTACDVSGKCPCLVNFGGKTC-SQCS 634
CK A C + +C L CS T C C + C C
Sbjct: 196 CKSHGCTAEGLCC------HSEC-LGNCSQ-PDDPTKCVA-----CRNFYLDGRCVETCP 242
Query: 635 PGFYQYPQCKACNCDSHGNIGVSCDDDGKCQCE--KNFGGDRCERCKEGLYNFP---ICE 689
P +Y + + N ++ C + + C C G +C
Sbjct: 243 PPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCT 302
Query: 690 ACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCERCKEGLYNFPICEECNCNPE 741
C + + C G I N E
Sbjct: 303 PCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVI-NGSLIINIRGGNNLAAE 353
Score = 37.6 bits (86), Expect = 0.048
Identities = 24/160 (15%), Positives = 38/160 (23%), Gaps = 25/160 (15%)
Query: 1420 NINRTDPGSCDSVTGECTGCLFNSAGDSCQYCAPGYYGNAVSLKNCVKCNCNPEGVLKTF 1479
+ + D + C G A NC N + V
Sbjct: 124 ELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFV---- 179
Query: 1480 AGCGSLPAGELCECKPKVQGRICDECRPLYWNLKASNPDGCEDCDCYTLGTIGGIKNCNP 1539
E C Q C+ + C LG +
Sbjct: 180 ---------ERCWTHSHCQKVCPTICKSHGCTAE------GLCCHSECLGNCSQPDDPT- 223
Query: 1540 KSGQCV-CKATAMNRKC-DACVDGTYALQDNNLFGCTECA 1577
+CV C+ ++ +C + C Y QD + C
Sbjct: 224 ---KCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQ 260
Score = 35.7 bits (81), Expect = 0.16
Identities = 34/250 (13%), Positives = 61/250 (24%), Gaps = 26/250 (10%)
Query: 147 EPCNCHGHADKCVYDPMVDEKRLSVDIQGNYEGGGVCQECRDNTEGINCHQRVAGYYRPY 206
E N + + ++D + + + C T + +
Sbjct: 120 EKNNELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDIC-PGTAKGKTNCPATVINGQF 178
Query: 207 GKHLNETDVCQPCQCAFHYATGNCAEGTGKC--ECRPEYTKP----DCNSCAF------- 253
+ CQ C + C C EC ++P C +C
Sbjct: 179 VERCWTHSHCQ-KVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRC 237
Query: 254 ------GYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFPT 307
Y+ + + L C+ + Q C + C GY +
Sbjct: 238 VETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSS 297
Query: 308 CSPCECNAVGSLSDLCEVDSGNCTCRN---NFAGRTCDSCADGYY-NYPRCTSCQCAFHY 363
C +G +C + G T + R C N +
Sbjct: 298 NLLCTP-CLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEA 356
Query: 364 ATGNCAEGTG 373
G E +G
Sbjct: 357 NLGLIEEISG 366
Score = 35.7 bits (81), Expect = 0.21
Identities = 26/165 (15%), Positives = 41/165 (24%), Gaps = 19/165 (11%)
Query: 289 NYAGDHCDTCAQGYYNFPTCSPCECNAVGSLSDLCEVDSGNCTCRNNFAGRTCDSCADGY 348
+ + D C C N C ++ C
Sbjct: 150 DDNEECGDICPGTAKGKTNCPATVINGQFV---------ERCWTHSHCQKVCPTICKSHG 200
Query: 349 YNYP-RCTSCQCAFHYATGNCAEGTG--KC-ECRPEYTKPDC-NSCAFGYFGYPNCEPCK 403
C +C GNC++ KC CR Y C +C Y+ + +
Sbjct: 201 CTAEGLCCHSECL-----GNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVN 255
Query: 404 CHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFPTCSQ 448
L C+ + Q C + C GY +
Sbjct: 256 FSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLL 300
Score = 34.5 bits (78), Expect = 0.40
Identities = 28/190 (14%), Positives = 40/190 (21%), Gaps = 24/190 (12%)
Query: 1636 IQNGQFYEAQLPDCQHNTLGDQCEQCQPGYHGNATQGTMADCLICACPLPITSNNFASGC 1695
I G + + + + N D C P T+
Sbjct: 112 ITRGSVRIEKNNELCYLA-TIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAK-----G 165
Query: 1696 DVSEDGCHMNGTLNFYCEPTSGQQCPCKENYAGDHCDTCAQACNCHGHADKCVYDPMVDE 1755
+ +NG C S Q C C C+ C +
Sbjct: 166 KTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSE-CLGNCSQPDDPTK 224
Query: 1756 KRLSVDIQGNYEGGGVCQECRDNTEGINCH-QCVAGYYRPYGKHLNETDVCQRQCLCQPR 1814
C CR+ C C YY CQ
Sbjct: 225 ----------------CVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKN 268
Query: 1815 VTGQTCNQPL 1824
Q C+Q +
Sbjct: 269 SRRQGCHQYV 278
Score = 33.0 bits (74), Expect = 1.4
Identities = 27/185 (14%), Positives = 40/185 (21%), Gaps = 22/185 (11%)
Query: 1397 TKCSSSNLYRSQLVYCKPCECSGNINRTDPGSCDSVTGECTGCLFNSAGDSCQYCAPGYY 1456
N + C +C + CQ P
Sbjct: 137 LDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTIC 196
Query: 1457 GNAVSLKNCVKCNCNPEGVLKTFAGCGSLPAGELC-ECKPKVQGRIC-DECRPLYWNLKA 1514
+ + C+ G C C C+ C + C P Y++ +
Sbjct: 197 KSHGCTAEGLCCHSECLG------NCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQD 250
Query: 1515 SNPDGCEDCD--CYTLGTIGGIKNCNPKSGQCVCKATAMNRKC-DACVDGTYALQDNNLF 1571
C + C Q + N KC C G N
Sbjct: 251 WRCVNFSFCQDLHHK---------CKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNL-- 299
Query: 1572 GCTEC 1576
CT C
Sbjct: 300 LCTPC 304
Score = 32.2 bits (72), Expect = 2.2
Identities = 19/115 (16%), Positives = 32/115 (27%), Gaps = 12/115 (10%)
Query: 733 CEECNCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDECRPLYWNLKASNPDGCEDCD 792
+ C +G A + E C Q C+ + C
Sbjct: 156 GDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAE------GLCCH 209
Query: 793 CYTLGTIGGIKNCNPKSGQCV-CKATAMNRKC-DACMDGTYALQDNNLFGCTECA 845
LG + +CV C+ ++ +C + C Y QD + C
Sbjct: 210 SECLGNCSQPDDPT----KCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQ 260
Score = 30.7 bits (68), Expect = 6.8
Identities = 23/179 (12%), Positives = 40/179 (22%), Gaps = 28/179 (15%)
Query: 1242 PDCHPC-----NCPFTAVCDSYTGECICAARVIGKKCDQCEPNTFGYDPIIGCEECNCHP 1296
C NCP T + + C + C+ + + + EC +
Sbjct: 157 DICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNC 216
Query: 1297 HGVNGTQQCD-----LFDGSC--SC------KENIVGRTCDHCVEGHWSFPYCVPCECDL 1343
+ +C DG C +C ++ C + H C
Sbjct: 217 SQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQ 276
Query: 1344 ----RGTTIDICNQG------TAECYCKKNVYGAACDVCKEGTFDIQADNVDGCTRCFC 1392
I C G C C + + + C
Sbjct: 277 YVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTV 335
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 42.7 bits (100), Expect = 4e-04
Identities = 29/133 (21%), Positives = 40/133 (30%), Gaps = 16/133 (12%)
Query: 555 CNCDIRGTEAGIC----DKTNGSCLCKEGYTGARCDQCKAGYYGYPDCKLCGCSAVGS-- 608
C C + + +C G C C GY G C+ G C
Sbjct: 86 CRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIIC 145
Query: 609 SSTACDVSGKCPCLVNFGGKTCSQCSPGFYQYPQCKACNCDSHGNIGVSCD-----DDGK 663
S V G+C C + QY +C NC+ + GK
Sbjct: 146 SGLGDCVCGQCLCHTSDVPGKLIYG-----QYCECDTINCERYNGQVCGGPGRGLCFCGK 200
Query: 664 CQCEKNFGGDRCE 676
C+C F G C+
Sbjct: 201 CRCHPGFEGSACQ 213
Score = 37.3 bits (86), Expect = 0.024
Identities = 30/131 (22%), Positives = 40/131 (30%), Gaps = 8/131 (6%)
Query: 1201 CQCDIDGSKSFECEQFG----GQCQCKPNVIGRRCEMCATGYYGFPDCHPCNCPFTAVCD 1256
C+C C G G C+C IG+ CE G C ++
Sbjct: 86 CRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIIC 145
Query: 1257 SYTGECICAARV--IGKKCDQCEPNTFGYDPIIGCEECNCHPHGVNGTQQCDLFDGSCSC 1314
S G+C+C + + + I CE N G G C G C C
Sbjct: 146 SGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCF--CGKCRC 203
Query: 1315 KENIVGRTCDH 1325
G C H
Sbjct: 204 HPGFEGSACQH 214
Score = 35.7 bits (82), Expect = 0.083
Identities = 26/132 (19%), Positives = 40/132 (30%), Gaps = 12/132 (9%)
Query: 311 CECNAVGSLSDLC----EVDSGNCTCRNNFAGRTCDSCADGYYNYPRCTSCQCAFHYAT- 365
C C LC ++ G C C + G+ C+ G + SC+ +
Sbjct: 86 CRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIIC 145
Query: 366 ---GNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQC 422
G+C G+C C + NCE + G G+ C
Sbjct: 146 SGLGDCV--CGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPG-RGLCFCGK-C 201
Query: 423 PCKENYAGDHCD 434
C + G C
Sbjct: 202 RCHPGFEGSACQ 213
Score = 35.4 bits (81), Expect = 0.11
Identities = 21/127 (16%), Positives = 27/127 (21%), Gaps = 1/127 (0%)
Query: 216 CQPCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFY 275
C+ G G C C Y +C G C+ N +
Sbjct: 88 CRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSG 147
Query: 276 CEPASGQQCPCKENYAGDHCDTCAQGYYNFPTCSPCECNAVGSLSDLCEVDSGNCTCRNN 335
QC C + + C V G C C
Sbjct: 148 LGDCVCGQCLCHTSDVPGKLIYGQYCECDTINC-ERYNGQVCGGPGRGLCFCGKCRCHPG 206
Query: 336 FAGRTCD 342
F G C
Sbjct: 207 FEGSACQ 213
Score = 31.1 bits (70), Expect = 2.8
Identities = 29/134 (21%), Positives = 47/134 (35%), Gaps = 12/134 (8%)
Query: 646 CNCDSHGNIGVSCD-----DDGKCQCEKNFGGDRCERCKEGLYNFPICEACNCDSHGNI- 699
C C C + G C+C+ + G CE +G + + +C D++ I
Sbjct: 86 CRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIIC 145
Query: 700 -GVSCDDDGKCQCEKNFGGDRCERCKEGLYNFPICEECNCNPEGVLKTFAGCGSLPAGEL 758
G+ G+C C + + + + CE N G G G G+
Sbjct: 146 SGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGG----PGRGLCFCGK- 200
Query: 759 CECKPKVQGRICDE 772
C C P +G C
Sbjct: 201 CRCHPGFEGSACQH 214
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine
kinase, glycoprotein, antigen:antibody complex, FAB
fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*
Length = 624
Score = 43.9 bits (102), Expect = 6e-04
Identities = 59/450 (13%), Positives = 104/450 (23%), Gaps = 21/450 (4%)
Query: 1385 DGCTRCFCFGKTTKCSSSNLYRSQLVYCKPCECSGNINRTDPGSCDSVT-----GECTGC 1439
C C+G + C + + C + +C C
Sbjct: 168 PSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVC 227
Query: 1440 LFNSAGDSC-QYCAPGYYGNAVSLKNCVKCNCNPEGVLKTFAGCGSLPAGELCECKPKVQ 1498
+C C P N + + NPEG A C +
Sbjct: 228 RKFRDEATCKDTCPPLMLYN----PTTYQMDVNPEGKYSFGATCVK----KCPRNYVVTD 279
Query: 1499 GRIC-DECRPLYWNLKASNPDGCEDCDCYTLGTIGGIKNCNPKSGQCVCKATAMNRKCDA 1557
C C + ++ C+ C+ GI K + + K
Sbjct: 280 HGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCT 339
Query: 1558 CVDGTYALQDNNLFGCTECACDIGGSINNLCNKSLIWMSSFRMVSFTKLSSQSNIVLPGL 1617
+ G + G + K++ ++ F ++ + L
Sbjct: 340 SISGDLHILPVAFRGDSFTHTPPLDPQELDILKTVKEITGFLLIQAWPENRTDLHAFENL 399
Query: 1618 VVEQFLNLCPTEFDMDVLIQNGQFYEAQLPDCQHNTLGDQCEQCQPGYHGNATQGTMADC 1677
+ + +F + V+ N L + + GD T
Sbjct: 400 EIIRGRTKQHGQFSLAVVSLN--ITSLGLRSLKEISDGDVIISGNKNLCYANTINWKKLF 457
Query: 1678 LICACPLPITSNNFASGCDVSEDGCHMNGTLNFYCEPTSGQQCPCKENYAGDHCDTCAQA 1737
I SN + C + CH + P C+ G C +
Sbjct: 458 GTSGQKTKIISNRGENKCKATGQVCHALCSPEGCWGPEPRDCVSCRNVSRGRECVDKCKL 517
Query: 1738 CNCHGHA--DKCVYDPMVDEKRLSVDIQGNYE-GGGVCQECRDNTEGINCH-QCVAGYYR 1793
+ E G C +C +G +C C AG
Sbjct: 518 LEGEPREFVENSECIQCHPECLPQAMNITCTGRGPDNCIQCAHYIDGPHCVKTCPAGVMG 577
Query: 1794 PYGKHLNETDVCQRQCLCQPRVTGQTCNQP 1823
+ + C C P
Sbjct: 578 ENNTLVWKYADAGHVCHLCHPNCTYGCTGP 607
Score = 40.8 bits (94), Expect = 0.005
Identities = 62/468 (13%), Positives = 97/468 (20%), Gaps = 27/468 (5%)
Query: 247 DCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFP 306
D S F KC + + C +G
Sbjct: 147 DFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSD 206
Query: 307 TCSP-CECNAVGSLSDLCEVDSGNCTCRNNFAGRTC-DSCADGYYNYPRCTSCQCAFHYA 364
C C G C CR TC D+C P
Sbjct: 207 CCHNQCAAGCTGPRESDCL------VCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGK 260
Query: 365 TGNCAEGTGKC--ECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQC 422
A KC +C + KC G
Sbjct: 261 YSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIG--I 318
Query: 423 PCKENYAGDHCDTCAQGYYNFPTCSQITLPDVPVIRVLMATITTHAVLLVNVTRLVLCLT 482
++ + + + V +++ + V +T
Sbjct: 319 GEFKDSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQELDILKTVKEIT 378
Query: 483 CVKLILAIVRAEITL---PDVPVIRVLMATITTHAVLFVIVTSEVQRLVSVIKPMDHVYV 539
LI A L ++ +IR ++ V + L S+ + D +
Sbjct: 379 GFLLIQAWPENRTDLHAFENLEIIRGRTKQHGQFSLAVVSLNITSLGLRSLKEISDGDVI 438
Query: 540 RKDTRALAVTNARQVCNCDIRGTEAGICDKTNGSCLCKEGYTGARCDQCKAGYYG--YPD 597
+ L N + G CK G +G D
Sbjct: 439 ISGNKNLCYANTINWKKLFGTSGQKTKIISNRGENKCKATGQVCHALCSPEGCWGPEPRD 498
Query: 598 CKLCGCSAVGSSSTACDVSGKCPCLVNFGGKTCSQCSPGFYQYPQCKACNCDSHGNIGVS 657
C C + G + C QC C +
Sbjct: 499 CVSCRNVSRGRECVDKCKLLEGEPREFVENSECIQC---------HPECLPQAMNITCTG 549
Query: 658 CDDDGKCQCEKNFGGDRC-ERCKEGLYNFPICEACNCDSHGNIGVSCD 704
D QC G C + C G+ G++ C
Sbjct: 550 RGPDNCIQCAHYIDGPHCVKTCPAGVMGENNTLVWKYADAGHVCHLCH 597
Score = 31.9 bits (71), Expect = 2.5
Identities = 35/359 (9%), Positives = 58/359 (16%), Gaps = 10/359 (2%)
Query: 97 DVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSCEPCNCHGHAD 156
D C L +P C + + +C +
Sbjct: 238 DTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGA----DSYE 293
Query: 157 KCVYDPMVDEKRLSVDIQGNYEGGGVCQECRDNTEGINCHQRVAGYYRPYGKHLNETDVC 216
+K + G + + N H+
Sbjct: 294 MEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHILPVAFR 353
Query: 217 QPCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGY-PNCEPCKCHMNGTLDFY 275
+ + + N E + F
Sbjct: 354 GDSFTHTPPLDPQELDILKTVKEITGFLLIQAWPENRTDLHAFENLEIIRGRTKQHGQFS 413
Query: 276 CEPASGQQCPCKENYAGDHCDTCAQGYYNFPTCSPCECNAVGSLSDLCEVDSGNCTCRNN 335
S + D N C N L +N
Sbjct: 414 LAVVSLNITSLGLRSLKEISDGDVIISGNKNLCYANTIN----WKKLFGTSGQKTKIISN 469
Query: 336 FAGRTCDSCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFG 395
C + + C +C + EC + + F
Sbjct: 470 RGENKCKATGQVCHALCSPEGCWGPEPRDCVSCRNVSRGRECVDKCKLLEGEPREFVENS 529
Query: 396 YPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHC-DTCAQGYYNFPTCSQITLPD 453
+C C G HC TC G D
Sbjct: 530 ECIQCHPECLPQAMNITCTGRGPDNCIQCAHYIDGPHCVKTCPAGVMGENNTLVWKYAD 588
Score = 31.5 bits (70), Expect = 2.9
Identities = 21/141 (14%), Positives = 32/141 (22%), Gaps = 3/141 (2%)
Query: 576 CKEGYTGARC-DQCKAGYYGYPDCKLCGCSAVGSSSTACDVSGKCPC--LVNFGGKTCSQ 632
C++ A C D C P + G S KCP +V G
Sbjct: 227 CRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRA 286
Query: 633 CSPGFYQYPQCKACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCERCKEGLYNFPICEACN 692
C Y+ + C + K+ K I +
Sbjct: 287 CGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDLH 346
Query: 693 CDSHGNIGVSCDDDGKCQCEK 713
G S ++
Sbjct: 347 ILPVAFRGDSFTHTPPLDPQE 367
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 43.3 bits (101), Expect = 7e-04
Identities = 28/223 (12%), Positives = 46/223 (20%), Gaps = 7/223 (3%)
Query: 189 NTEGINCHQRVAGYYRPYGKHLNETDVCQPCQCAFHYATGNCAEGTGKCE--CRPEYTKP 246
++ + Y C C + T E R T
Sbjct: 121 YLSTVDWSLILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNR 180
Query: 247 DCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCP-CKENYAGDHC-DTCAQGYYN 304
C E +C L P + C C+ Y C C Y
Sbjct: 181 CQKMCPSTCGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNTYR 240
Query: 305 FPTCSPCECNAVGSLSDLCEVDSGNCTCRNNFAGRTCDSCADGYYNYPRCTSCQCAFHYA 364
F C + ++ +S + G C G+ +
Sbjct: 241 FEG-WRCVDRDFCA--NILSAESSDSEGFVIHDGECMQECPSGFIRNGSQSMYCIPCEGP 297
Query: 365 TGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMN 407
E K + T + G + +
Sbjct: 298 CPKVCEEEKKTKTIDSVTSAQMLQGCTIFKGNLLINIRRGNNI 340
Score = 35.2 bits (80), Expect = 0.22
Identities = 23/174 (13%), Positives = 40/174 (22%), Gaps = 20/174 (11%)
Query: 293 DHCDTCAQGYYNFPTCSPCECNAVGSLSDLCEVDSGNCTCRNNFAG------RTCDSCAD 346
Y P EC + + + T N + R C
Sbjct: 128 SLILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPS 187
Query: 347 GYYNYPRCTSCQCAFHYATGNCAEGTGKCEC---RPEYTKPDC-NSCAFGYFGYPNCEPC 402
+ +C G+C+ C R Y C +C + + C
Sbjct: 188 TCGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNTYRF-EGWRC 246
Query: 403 KCHMNGTLDFYCEPASGQQCPCKENYAGDH---CDTCAQGYYNFPTCSQITLPD 453
+C + E + C G+ + S +P
Sbjct: 247 VDR------DFCANILSAESSDSEGFVIHDGECMQECPSGFIRNGSQSMYCIPC 294
Score = 32.1 bits (72), Expect = 1.8
Identities = 21/192 (10%), Positives = 39/192 (20%), Gaps = 8/192 (4%)
Query: 555 CNCDIRGTEAGICDKTNGSCLCKEGYTGARCDQCKAGYYGYPDCKLCGCSAVGSSSTACD 614
+ E + C + + C +GS S +
Sbjct: 155 TMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPSTCGKRACTENNECCHPECLGSCSAPDN 214
Query: 615 VSGKCPCLVNFGGKTC-SQCSPGFYQYPQCKACNCDSHGNIGVSCDDDGKCQCEKNFGGD 673
+ C + C C P Y++ + + D NI +
Sbjct: 215 DTACVACRHYYYAGVCVPACPPNTYRFEGWRCVDRDFCANILSAES---SDSEGFVIHDG 271
Query: 674 RC-ERCKEGLYNFPICE---ACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCERCKEGLYN 729
C + C G + + + +G
Sbjct: 272 ECMQECPSGFIRNGSQSMYCIPCEGPCPKVCEEEKKTKTIDSVTSAQMLQGCTIFKGNLL 331
Query: 730 FPICEECNCNPE 741
I N E
Sbjct: 332 INIRRGNNIASE 343
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 42.7 bits (100), Expect = 0.001
Identities = 48/297 (16%), Positives = 83/297 (27%), Gaps = 45/297 (15%)
Query: 584 RCDQCKAGYYGYPDCKLC----GCSAVGSSSTACDVSGKCPCLVNFGGKTCSQCSPGFYQ 639
C C G+ G + C C+ V + +C G C C P Y+
Sbjct: 26 SCGFCPVGFLG--NGTHCEDLDECALVPDICFSTSKVPRCVNTQ--PGFHCLPCPPR-YR 80
Query: 640 YPQCKACNCDSHGNIGVSCDDDGKCQCEKNF---------------GGDRCERCKEGL-- 682
Q ++ C+ + C+ + + +CE C+ G
Sbjct: 81 GNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCE-CQTGYAG 139
Query: 683 YNFPICEACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCERCKEGLYNFPICEECNCNPEG 742
E + D N+ + C + C K+ +E I + C+ + +
Sbjct: 140 DGLICGEDSDLDGWPNLNLVCATNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDN 199
Query: 743 --VLKTFAGCGSLPAGELCECKPKVQGRICDECRPLYWNLKASNPDGCEDCDCYTLGTIG 800
V C L + G CD C P N + D + D ++ G
Sbjct: 200 DGVTDEKDNCQLLFNPRQADYDKDEVGDRCDNC-PYVHNPAQIDTDNNGEGDACSVDIDG 258
Query: 801 -GIKNCNPKSGQCVCKATAMNRKCDACMDGTYALQDNNLFGCTECACDIGGSINNLC 856
+ N C + D DG G C + + +
Sbjct: 259 DDVFNER-----DNCPYVYNTDQRDTDGDG---------VGDHCDNCPLVHNPDQTD 301
Score = 40.0 bits (93), Expect = 0.007
Identities = 25/157 (15%), Positives = 38/157 (24%), Gaps = 9/157 (5%)
Query: 1657 QCEQCQPGYHGNATQGTMADCLICACPLPITSNNFASGCDVSEDGCHMNGTLNFYCEPTS 1716
C C P Y GN G + + C CH + + +
Sbjct: 71 HCLPCPPRYRGNQPVGVGLEAAKTEK----QVCEPENPCKDKTHNCHKHAECIYLGHFSD 126
Query: 1717 GQ-QCPCKENYAGDHCDTCAQACNCHGHADKCVYDPMVDEKRLSVDIQGNYEGGGVCQEC 1775
+C C+ YAGD + G + + D + QE
Sbjct: 127 PMYKCECQTGYAGDGLICGEDSDLD-GWPNLNLVCATNATYHCIKDNCPH--LPNSGQED 183
Query: 1776 RDNTEGIN-CHQCVAGYYRPYGKHLNETDVCQRQCLC 1811
D + C K + RQ
Sbjct: 184 FDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADY 220
Score = 38.5 bits (89), Expect = 0.025
Identities = 39/285 (13%), Positives = 57/285 (20%), Gaps = 59/285 (20%)
Query: 185 ECRDNT--EGINCHQRVAGYYRPYGKHLNETDVCQPCQCAFHYATGN---------CAEG 233
C N G C G + C C F GN CA
Sbjct: 5 GCLSNPCFPGAQCSSFPDGSWS-----------CGFCPVGF---LGNGTHCEDLDECALV 50
Query: 234 TGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGD 293
C P C + G+ +C PC G + + +
Sbjct: 51 PD--ICFSTSKVPRCVNTQPGF----HCLPCPPRYRGN-QPVGVGLEAAKTEKQVCEPEN 103
Query: 294 HCDTCAQGYYNFPTCSPCECNAVGSLSDLCEVDSGNCTCRNNFAGRT------------- 340
C C +A C C+ +AG
Sbjct: 104 PCKD---------KTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWP 154
Query: 341 --CDSCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPN 398
CA + +C + + + C + N
Sbjct: 155 NLNLVCATNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFN 214
Query: 399 CEPCKCHMNGTLDFYC---EPASGQQCPCKENYAGDHCDTCAQGY 440
+ D + Q N GD C G
Sbjct: 215 PRQADYDKDEVGDRCDNCPYVHNPAQIDTDNNGEGDACSVDIDGD 259
Score = 36.1 bits (83), Expect = 0.11
Identities = 44/267 (16%), Positives = 67/267 (25%), Gaps = 34/267 (12%)
Query: 103 DPEDPYHRICRCQHNTCGHNCEVCCPGYE----QKAWRQSQSNKPFSCEPCN-------- 150
D ++ RC + G +C C P Y ++ + CEP N
Sbjct: 52 DICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHN 111
Query: 151 CHGHADKCVYDPMVDEKRLSVDIQGNYEG-GGVCQECRDNTEGINCHQRVAGYYRPYGKH 209
CH HA+ C+Y + + Q Y G G +C E D N + A +
Sbjct: 112 CHKHAE-CIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCAT-------N 163
Query: 210 LNETDVCQPCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMN 269
+ C + + + C + N +
Sbjct: 164 ATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKD 223
Query: 270 GTLDFYC---EPASGQQCPCKENYAGDHCDTCAQGYY------NFPTCSPCECNAVGSLS 320
D + Q N GD C G N P + +
Sbjct: 224 EVGDRCDNCPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYNTDQRD----T 279
Query: 321 DLCEVDSGNCTCRNNFAGRTCDSCADG 347
D V C D D
Sbjct: 280 DGDGVGDHCDNCPLVHNPDQTDVDNDL 306
Score = 35.8 bits (82), Expect = 0.15
Identities = 32/184 (17%), Positives = 54/184 (29%), Gaps = 22/184 (11%)
Query: 562 TEAGICDKTNGSCLCKEGYTGARCDQCKAGYYGYPDCKLCGCSAVGSSST---------- 611
IC T+ C G C C Y G + +A
Sbjct: 49 LVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDK 108
Query: 612 --ACDVSGKCPCLVNFG-GKTCSQCSPGF--YQYPQCKACNCDSHGNIGVSCDDDGKCQC 666
C +C L +F +C G+ + + D N+ + C + C
Sbjct: 109 THNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYHC 168
Query: 667 EKNFGGDRCERCKEGLYNFPICEACNCDSHGNIGVS-------CDDDGKCQCEKNFGGDR 719
K+ +E I +AC+ D + + + +K+ GDR
Sbjct: 169 IKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDR 228
Query: 720 CERC 723
C+ C
Sbjct: 229 CDNC 232
Score = 32.3 bits (73), Expect = 1.6
Identities = 41/245 (16%), Positives = 60/245 (24%), Gaps = 27/245 (11%)
Query: 216 CQPCQCAFHYATGNCAEGTGKCECRPEYTK-PDCNSCAFGYFGYPNCEPCKCHMNGTLDF 274
C PC + GN G G + E N C C + +
Sbjct: 72 CLPCPPRY---RGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPM 128
Query: 275 YCEPASGQQCPCKENYAGD----HCDTCAQGYYNFPTCSPCECNAVGSLSDLCEVDSGNC 330
Y +C C+ YAGD D+ G+ N C NA N
Sbjct: 129 Y-------KCECQTGYAGDGLICGEDSDLDGWPN--LNLVCATNATYHCIKDNCPHLPNS 179
Query: 331 TCRNNFAGRTCDSCADGYYNYPRCTSCQCAFHYATGN--------CAEGTGKCECRPEYT 382
+ D+C D N + C
Sbjct: 180 GQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDRCDNCPYVHNPA 239
Query: 383 KPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYN 442
+ D ++ G + + D + Q + GDHCD C +
Sbjct: 240 QIDTDNNGEGDACSVDIDGDDV--FNERDNCPYVYNTDQRDTDGDGVGDHCDNCPLVHNP 297
Query: 443 FPTCS 447
T
Sbjct: 298 DQTDV 302
Score = 31.5 bits (71), Expect = 3.4
Identities = 38/253 (15%), Positives = 54/253 (21%), Gaps = 23/253 (9%)
Query: 1213 CEQFGGQCQCKPNVIGRRCEMCATGYYG---------FPDCHPCNCPFTAVCDSYTGECI 1263
C +C G C C Y G C C T C
Sbjct: 54 CFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCH 113
Query: 1264 CAARVIGKKCD-------QCEPNTFGYDPIIGCEECNCHPHGVNGTQQCDLFDGSCSCKE 1316
A I +C+ G I G + G + + C +
Sbjct: 114 KHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLD---GWPNLNLVCATNATYHCIK 170
Query: 1317 NIVGRTCDHCVEGHWSFPYCVPCECDLRGTTIDICNQGTAECYCKKNVYGAACDVCKEGT 1376
+ + E C+ D D C N A D + G
Sbjct: 171 DNCPHLPNSGQEDFDKDGIGDACDDD---DDNDGVTDEKDNCQLLFNPRQADYDKDEVGD 227
Query: 1377 FDIQADNVDGCTRCFCFGKTTKCSSSNLYRSQLVYCKPCECSGNINRTDPGSC-DSVTGE 1435
V + + S V+ + C N + D V
Sbjct: 228 RCDNCPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYNTDQRDTDGDGVGDH 287
Query: 1436 CTGCLFNSAGDSC 1448
C C D
Sbjct: 288 CDNCPLVHNPDQT 300
Score = 30.4 bits (68), Expect = 8.2
Identities = 38/250 (15%), Positives = 54/250 (21%), Gaps = 35/250 (14%)
Query: 1340 ECDLRGTTIDICNQGTAECYCKKNVYGAACDVCKEGTFDIQADNVDGCTRCFCFGKTTKC 1399
EC L DIC + C G C C + + G + C
Sbjct: 46 ECAL---VPDICFSTSKVPRCVNTQPGFHCLPCPPRY---RGNQPVGVGLEAAKTEKQVC 99
Query: 1400 SSSNLYRSQLVYCKPCECSGNINRTDPGSCDSVTGECTGCLFNSAGDSCQYCAPGYYGNA 1459
N C + + EC S C GY G+
Sbjct: 100 EPEN------------PCKDKTHNCHKHA------ECIYLGHFSDPMYKCECQTGYAGDG 141
Query: 1460 VSLKNCVKCNCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDECRPLYWNLKASNPDG 1519
+ + P L + C P D+
Sbjct: 142 LICGEDSDLDGWPNLNLVCATNATYHCIKDNCPHLPNSGQEDFDKD--------GIGDAC 193
Query: 1520 CEDCDCYTLGTIGGIKNCNPKSGQCVCKATAMNRKCDACVD---GTYALQDNNLFGCTEC 1576
+D D + Q + +CD C DNN G
Sbjct: 194 DDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDRCDNCPYVHNPAQIDTDNNGEGDACS 253
Query: 1577 ACDIGGSINN 1586
G + N
Sbjct: 254 VDIDGDDVFN 263
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 0.002
Identities = 95/605 (15%), Positives = 153/605 (25%), Gaps = 237/605 (39%)
Query: 855 LCNKDLSALNSEELPLLNKDQPKLRFDMRITKPGPHVLVLSYVT-------PGPHTQDSA 907
L D+ AL + KL + T L+ +Y+T P +SA
Sbjct: 96 LEGNDIHALAA-----------KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144
Query: 908 VIQLEASSQTTVERGNVRLHDCPYTTPCRATVLDKQGKVSVFEFDTNYISVEL------- 960
+ A V GN +L + QG + F+ EL
Sbjct: 145 L--FRA-----VGEGNAQL----VA------IFGGQGNTDDY-FE------ELRDLYQTY 180
Query: 961 -TADENPTNNASAAIQKIVAIPEA------------KWSMDH--IQPKTECVRKDGQCVQ 1005
+ ++ + +++ +W +++ P + +
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW-LENPSNTPDKDYL-------- 231
Query: 1006 AMFPTSPETKKIEAESGLGPL--ATQL-------------PGSLADNKTGLVYLDHKDAM 1050
P S PL QL PG L G H +
Sbjct: 232 LSIPIS------------CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA--TGHSQGL 277
Query: 1051 VD---IAGTVNNPGAYVFVVHFYQPDFPEFD------MDVLIQNGQFYEAQLPVKHCPAR 1101
V IA T + F + VL F+
Sbjct: 278 VTAVAIAET---------------DSWESFFVSVRKAITVL-----FF------------ 305
Query: 1102 SGCRAVVQQTNGNRMFTLEKNIVATFKEPNHK------SVW-LDYILLIPA-NEFNENII 1153
G R + N +L +I+ E N S+ L + N+ N
Sbjct: 306 IGVRC--YEAYPN--TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS--- 358
Query: 1154 NELPYSRAKEFIDVCGKNHFYLDNSTSEFC----KKATFSMTISFLHEALPCQCDIDGSK 1209
LP + + L N ++ + + ++ +D S+
Sbjct: 359 -HLPAGKQ---V------EISLVNGAKNLVVSGPPQSLYGLNLTL--RKAKAPSGLDQSR 406
Query: 1210 S-FECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNCPF-TAVCDSYTGECICAAR 1267
F + K R F P PF + A+
Sbjct: 407 IPF--------SERKLKFSNR-----------F---LPVASPFHS----HLLVP---ASD 437
Query: 1268 VIGKKCDQCEPNTFGYDPIIGCEECNCHPHGVNGTQQCDLFDGS--CSCKENIVGRTCD- 1324
+I N ++ ++ P V T FDGS +I R D
Sbjct: 438 LI---NKDLVKNNVSFNA----KDIQI-P--VYDT-----FDGSDLRVLSGSISERIVDC 482
Query: 1325 ---HCVEGHWSFPYCVPCECDLRGTTIDICNQGTA---ECYCKKNVYGAACDVCKEGTFD 1378
V W + T I G A +N G V GT D
Sbjct: 483 IIRLPV--KW------ETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLD 534
Query: 1379 IQADN 1383
I D+
Sbjct: 535 INPDD 539
Score = 38.9 bits (90), Expect = 0.021
Identities = 36/252 (14%), Positives = 63/252 (25%), Gaps = 97/252 (38%)
Query: 1124 VATFKEPNHKSVWLDYILLIPANEFNENII---------------NELPYSRAKEFIDVC 1168
V++ EP+ D +L + EF + N+ + KE I
Sbjct: 68 VSSLVEPSKVGQ-FDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI--- 123
Query: 1169 GKNHFYLDNSTSEFCKKATFSMTISFLHEALPCQCDIDGSKSFECEQFGGQ---CQC--- 1222
KN + + K+ + S L A+ +G+ FGGQ
Sbjct: 124 -KN-YI---TARIMAKRPFDKKSNSALFRAVG-----EGNAQL-VAIFGGQGNTDDYFEE 172
Query: 1223 --------KPNV---IGR---------RCEMCATGYY--GF--------PDCHPCNCPFT 1252
V I R + A + G P P + +
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP-DKDYL 231
Query: 1253 AVCDSYTGECICAARVIGKKCDQCEPNTFGYDPIIG-CEECN----CHPHGVNGTQQCDL 1307
P + P+IG + + G +
Sbjct: 232 LSI----------------------PISC---PLIGVIQLAHYVVTAKLLGFTPGELRSY 266
Query: 1308 FDGSCSCKENIV 1319
G+ + +V
Sbjct: 267 LKGATGHSQGLV 278
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 42.1 bits (98), Expect = 0.002
Identities = 22/127 (17%), Positives = 32/127 (25%), Gaps = 3/127 (2%)
Query: 555 CNCDIRGTEAGICDKTNGSCLCKEGYTGARC-DQCKAGYYGYPDCKLCGCSAVGSSSTAC 613
C D C+ Y RC + C YY + D + S C
Sbjct: 207 CCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKC 266
Query: 614 DVSGK--CPCLVNFGGKTCSQCSPGFYQYPQCKACNCDSHGNIGVSCDDDGKCQCEKNFG 671
S + C V K +C G+ C V +G+ +
Sbjct: 267 KNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTS 326
Query: 672 GDRCERC 678
C
Sbjct: 327 AQELRGC 333
Score = 39.8 bits (92), Expect = 0.007
Identities = 32/261 (12%), Positives = 47/261 (18%), Gaps = 18/261 (6%)
Query: 168 RLSVDIQGNYEGGGVCQECRDNTEGINCHQRVAGYYRPYGKHLNETDVCQPCQCAFHYAT 227
R SV I+ N E + I + D+C
Sbjct: 114 RGSVRIEKNNELCYLATIDWSR---ILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCP 170
Query: 228 GNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCK 287
G C C + C S C
Sbjct: 171 ATVINGQFVERC--WTHSHCQKVCPTICKSHGCTAEGLCC-----------HSECLGNCS 217
Query: 288 ENYAGDHCDTCAQGYYNFPTCSPCECNAVGSLSDLCEVDSGNCTCRNNFAGRTCDSCADG 347
+ C C Y + C C S + C
Sbjct: 218 QPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQY 277
Query: 348 YYNYPRCTSCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKC-HM 406
+ +C C Y + C E C +
Sbjct: 278 VIHNNKCIPE-CPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVI 336
Query: 407 NGTLDFYCEPASGQQCPCKEN 427
NG+L + + N
Sbjct: 337 NGSLIINIRGGNNLAAELEAN 357
Score = 38.3 bits (88), Expect = 0.023
Identities = 23/197 (11%), Positives = 41/197 (20%), Gaps = 8/197 (4%)
Query: 553 QVCNCDIRGTEAGICDKTNGSCLCKEGYTGARCDQCKAGYYGYPDCKLCGCSAVGSSSTA 612
+C +G NG + + C + C
Sbjct: 157 DICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNC 216
Query: 613 CDVSGKCPCL----VNFGGKTCSQCSPGFYQYPQCKACNCDSHGNIGVSCDDDGKCQCEK 668
C+ G+ C P +Y + + N ++ C + + C +
Sbjct: 217 SQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQ 276
Query: 669 NF--GGDRCERCKEGLYNFPICEACNCDSHGNIGVS--CDDDGKCQCEKNFGGDRCERCK 724
C G C V + + + R
Sbjct: 277 YVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVI 336
Query: 725 EGLYNFPICEECNCNPE 741
G I N E
Sbjct: 337 NGSLIINIRGGNNLAAE 353
Score = 35.2 bits (80), Expect = 0.21
Identities = 26/205 (12%), Positives = 45/205 (21%), Gaps = 23/205 (11%)
Query: 248 CNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYA-GDHCDTCAQGYYNFP 306
+S + + +C C + + C G + C +
Sbjct: 137 LDSVEDNHIVLNKDDNEECGDI------CPGTAKGKTNCPATVINGQFVERCWTHSHCQK 190
Query: 307 TCSPCECNAVGSLSDLCEVDSGNCTCRNNFAGRTCDSCADGYYNYPRCTSCQCAFHYATG 366
C + + LC C C +C + Y + RC
Sbjct: 191 VCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLD-GRCVE---------- 239
Query: 367 NCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPA--SGQQCPC 424
C + + C + N CH + C P SG
Sbjct: 240 TCPPPYYHFQDWRCVN---FSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNS 296
Query: 425 KENYAGDHCDTCAQGYYNFPTCSQI 449
C + + I
Sbjct: 297 SNLLCTPCLGPCPKVCHLLEGEKTI 321
Score = 33.3 bits (75), Expect = 0.80
Identities = 19/189 (10%), Positives = 45/189 (23%), Gaps = 13/189 (6%)
Query: 1231 CEMCATGYYGFPDCHPCNCPFTAVCDSYTGECICAARVIGKKCDQCEPNTFGYDPIIGCE 1290
++C G +C + C + C+ + + +
Sbjct: 156 GDICPGTAKGKTNCPATVI-----NGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHS 210
Query: 1291 ECNCHPHGVNGTQQCDLFDGSCSCKENIVGRTC-DHCVEGHWSFPYCVPCECDLRGTTID 1349
EC + + +C +C+ + C + C ++ F
Sbjct: 211 ECLGNCSQPDDPTKC------VACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHH 264
Query: 1350 ICNQGTAECYCKKNVYGAAC-DVCKEGTFDIQADNVDGCTRCFCFGKTTKCSSSNLYRSQ 1408
C + + ++ C C G ++ + C S
Sbjct: 265 KCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSV 324
Query: 1409 LVYCKPCEC 1417
+ C
Sbjct: 325 TSAQELRGC 333
Score = 31.0 bits (69), Expect = 3.9
Identities = 31/233 (13%), Positives = 54/233 (23%), Gaps = 28/233 (12%)
Query: 1244 CHPCNCPFTAVCDSYTGECICAARVIGKKCDQCEPNTFGYDPIIGCEECNCHPHGVNGTQ 1303
C+ ++ + DS I + ++C P T N T
Sbjct: 126 CYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTH 185
Query: 1304 QCDLFDGSCSCKENIVGRTCDHCVEGHWSFPYCVPCECDLRGTTIDICNQGTAECYCKKN 1363
CK + C + T C+
Sbjct: 186 SHCQKVCPTICKSHGCTAEGL--------------CCHSECLGNCSQPDDPTKCVACRNF 231
Query: 1364 VYGAAC-DVCKEGTFDIQADNVDGCTRCF-----CFGKTTK-CSSSNLYRSQLVYCKPCE 1416
C + C + Q + C C + C ++ ++ + P
Sbjct: 232 YLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECP-- 289
Query: 1417 CSGNINRTDPGSCDSVTGECTGCLFNSAGDSCQYCAPGYYGNAVSLKNCVKCN 1469
SG + C G C G+ +A L+ C N
Sbjct: 290 -SGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDS----VTSAQELRGCTVIN 337
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 41.1 bits (95), Expect = 0.004
Identities = 21/123 (17%), Positives = 29/123 (23%), Gaps = 4/123 (3%)
Query: 570 TNGSCL-CKEGYTGARC-DQCKAGYYGYPDCKLCGCSAVGSSSTACDVSGKCP--CLVNF 625
CL C++ A C D C P + G S KCP +V
Sbjct: 220 RESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTD 279
Query: 626 GGKTCSQCSPGFYQYPQCKACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCERCKEGLYNF 685
G C Y+ + C + K+ K
Sbjct: 280 HGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCT 339
Query: 686 PIC 688
I
Sbjct: 340 SIS 342
Score = 41.1 bits (95), Expect = 0.004
Identities = 24/182 (13%), Positives = 35/182 (19%), Gaps = 3/182 (1%)
Query: 555 CNCDIRGTEAGICDKTNGSCLCKEGYTGARCDQCKAGYYGYPDCKLCGCSAVGSSSTACD 614
+C + T C Q +G C + + T
Sbjct: 161 GSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPR 220
Query: 615 VSGKCPCLVNFGGKTC-SQCSPGFYQYPQCKACNCDSHG--NIGVSCDDDGKCQCEKNFG 671
S C TC C P P + + G + G +C
Sbjct: 221 ESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDH 280
Query: 672 GDRCERCKEGLYNFPICEACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCERCKEGLYNFP 731
G C Y C + K+ K
Sbjct: 281 GSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTS 340
Query: 732 IC 733
I
Sbjct: 341 IS 342
Score = 37.2 bits (85), Expect = 0.052
Identities = 23/202 (11%), Positives = 33/202 (16%), Gaps = 18/202 (8%)
Query: 259 PNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFPTCSPCECNAVGS 318
+ M+ CP + + C
Sbjct: 145 SSDFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSP 204
Query: 319 LSDLCEVDSGNCT---------CRNNFAGRTC-DSCADGYYNYPRCTSCQCAFHYATGNC 368
+ CT CR TC D+C P +
Sbjct: 205 SDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDV--NPEGKYS 262
Query: 369 AEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENY 428
T +C Y D SC C M C+ G
Sbjct: 263 FGATCVKKCPRNYVVTDHGSC------VRACGADSYEMEEDGVRKCKKCEGPCRKVCNGI 316
Query: 429 AGDHCDTCAQGYYNFPTCSQIT 450
+
Sbjct: 317 GIGEFKDSLSINATNIKHFKNC 338
Score = 36.1 bits (82), Expect = 0.11
Identities = 28/232 (12%), Positives = 41/232 (17%), Gaps = 16/232 (6%)
Query: 106 DPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSCEPCNCHGHADKCVYDPMVD 165
+ +C+ C P + + C
Sbjct: 146 SDFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPS 205
Query: 166 EKRLSVDIQGNYEGG-GVCQECRDNTEGINCHQRVAGYYRPYGKHLNETDVCQPCQCAFH 224
+ + G C CR + C P N T
Sbjct: 206 DCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTC-----PPLMLYNPTTYQMDVNPEGK 260
Query: 225 YATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQC 284
Y+ G T +C Y D SC C M C+ G
Sbjct: 261 YSFGA----TCVKKCPRNYVVTDHGSC------VRACGADSYEMEEDGVRKCKKCEGPCR 310
Query: 285 PCKENYAGDHCDTCAQGYYNFPTCSPCECNAVGSLSDLCEVDSGNCTCRNNF 336
+ G L L G+
Sbjct: 311 KVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTHTPP 362
Score = 34.9 bits (79), Expect = 0.28
Identities = 29/263 (11%), Positives = 60/263 (22%), Gaps = 20/263 (7%)
Query: 1370 DVCKEGTFDIQADNVDGCTRCFCFGKTTKCSSSNLYRSQLVYCKPCECSGNINRTDPGSC 1429
+++ C +C C + Q + C +
Sbjct: 146 SDFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPS 205
Query: 1430 DSVTGECTGCLFNSAGDSCQYCAPGYYGNA---------VSLKNCVKCNCNPEGVLKTFA 1480
D +C C C + + + NPEG A
Sbjct: 206 DCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGA 265
Query: 1481 GCGSLPAGELCECKP----KVQGRICDECRPLYWNLKASNPDGCEDCDCYTLGTIGGIKN 1536
C + +C G C + ++ C+ C+ GI
Sbjct: 266 TC-------VKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGI 318
Query: 1537 CNPKSGQCVCKATAMNRKCDACVDGTYALQDNNLFGCTECACDIGGSINNLCNKSLIWMS 1596
K + + K + G + G + K++ ++
Sbjct: 319 GEFKDSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQELDILKTVKEIT 378
Query: 1597 SFRMVSFTKLSSQSNIVLPGLVV 1619
F ++ + L +
Sbjct: 379 GFLLIQAWPENRTDLHAFENLEI 401
Score = 33.8 bits (76), Expect = 0.56
Identities = 20/159 (12%), Positives = 31/159 (19%), Gaps = 4/159 (2%)
Query: 586 DQCKAGYYGYPDCKLCGCSAVGSSSTACDVSGKCP-CLVNFGGKTCSQCSPGFYQYPQCK 644
+ L C S G C+Q G +
Sbjct: 146 SDFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPS 205
Query: 645 ACNCDSHGNIGVSCDDDGKCQCEKNFGGDRC-ERCKEGLYNFPICEACNCDSHG--NIGV 701
C + + C K C + C + P + + G + G
Sbjct: 206 DCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGA 265
Query: 702 SCDDDGKCQCEKNFGGDRCERCKEGLYNFPICEECNCNP 740
+C G C Y C
Sbjct: 266 TCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKK 304
Score = 30.7 bits (68), Expect = 5.9
Identities = 26/209 (12%), Positives = 42/209 (20%), Gaps = 10/209 (4%)
Query: 1221 QCKPNVIGRRCEMCATGYYGFPDCHPC--NCPFTAVCDSYTGEC--ICAARVIGKKCDQC 1276
+C P+ C C C S + C CAA G + C
Sbjct: 165 KCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDC 224
Query: 1277 EPNTFGYDPIIGCEECNCHPHGVNGTQQCDLFDGSCSCKENIVGRTCDHCVEGHWSFPYC 1336
D + C T Q D+ C + +
Sbjct: 225 LVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGA---TCVKKCPRNYVVTDHG 281
Query: 1337 VPCECDLRGTTIDICNQGTAECYCKKNVYGAACDVCKEGTFDIQADNVDGCTRCFCFGKT 1396
+ + CKK G + + T F
Sbjct: 282 SCVRACGADSYEMEEDGV---RKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNC 338
Query: 1397 TKCSSSNLYRSQLVYCKPCECSGNINRTD 1425
T S + ++ +
Sbjct: 339 TSISGDLHILPVAFRGDSFTHTPPLDPQE 367
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate
IMMU system, blood, membrane, cytolysin, immune SYST;
HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB:
4a5w_B* 4e0s_B*
Length = 913
Score = 39.5 bits (91), Expect = 0.014
Identities = 32/259 (12%), Positives = 63/259 (24%), Gaps = 19/259 (7%)
Query: 1202 QCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNCPFTAVCDSYTGE 1261
+ +G ++ + C GF V +
Sbjct: 594 IMENNGQPCINDDEEMKEVDLPEIEADSGCPQPVPPENGF---IRNEKQLYLVGEDVEIS 650
Query: 1262 CICAARVIGKKCDQCEPNTFGYDPIIGCEECNCHPHGVNGTQQCDLFDGSCSCKENI--- 1318
C+ +G + +C P+ + C+ C V F E+I
Sbjct: 651 CLTGFETVGYQYFRCLPDGTWRQGDVECQRTECIKPVVQEVLTITPFQRLYRIGESIELT 710
Query: 1319 -------VGRTCDHCVEGHWSFPYCVPCECDLRGTTIDICNQGTAECYCKKNVYGAACDV 1371
G + C W+ P C+ D + C + G+ C +
Sbjct: 711 CPKGFVVAGPSRYTCQGNSWTPPISNSLTCE-----KDTLTKLKGHCQLGQKQSGSEC-I 764
Query: 1372 CKEGTFDIQADNVDGCTRCFCFGKTTKCSSSNLYRSQLVYCKPCECSGNINRTDPGSCDS 1431
C D + D C + + + + + D +
Sbjct: 765 CMSPEEDCSHHSEDLCVFDTDSNDYFTSPACKFLAEKCLNNQQLHFLHIGSCQDGRQLEW 824
Query: 1432 VTGECTGCLFNSAGDSCQY 1450
++ +SC Y
Sbjct: 825 GLERTRLSSNSTKKESCGY 843
Score = 34.9 bits (79), Expect = 0.32
Identities = 45/352 (12%), Positives = 79/352 (22%), Gaps = 45/352 (12%)
Query: 107 PYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSCEPCNCHGHADKCVYDPMVDE 166
+ + + + C + ++ C +C + +E
Sbjct: 529 ENCEKQSPDYKSNAVDGQWGCWSSWSTCDATYKRSRTRECNNPAPQRGGKRCEGEKRQEE 588
Query: 167 KRLSVDIQGNYEGGGVCQECRDNTEGINCHQRVA---GYYRPYGKHLNETDV-CQPCQCA 222
++ N + E + G NE +
Sbjct: 589 DCTFSIMENNGQPCINDDEEMKEVDLPEIEADSGCPQPVPPENGFIRNEKQLYLVGEDVE 648
Query: 223 FHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQ 282
TG G C P+ T C+ +C + +
Sbjct: 649 ISCLTGFETVGYQYFRCLPDGTWRQG---------DVECQRTECIKPVVQEVLTITPFQR 699
Query: 283 --------QCPCKENYA--GDHCDTCAQGYYNFPTCSPCECNAVGSLSDLCEVDSGNCTC 332
+ C + + G TC + P + C D G+C
Sbjct: 700 LYRIGESIELTCPKGFVVAGPSRYTCQGNSWTPPISNSLTCE-----KDTLTKLKGHCQL 754
Query: 333 RNNFAGRTCDSCADGYYNYPRCTSCQCAFHYATGN------CAEGTGKCECRPEYTKPDC 386
+G C C + + C F + + C KC +
Sbjct: 755 GQKQSGSEC-ICMSPEEDCSHHSEDLCVFDTDSNDYFTSPACKFLAEKCLNNQQLHFLHI 813
Query: 387 NSCAFGYFGYPNCEPCKCHMNGTLDFYCEP----------ASGQQCPCKENY 428
SC G E + N T C AS +C C
Sbjct: 814 GSCQDGRQLEWGLERTRLSSNSTKKESCGYDTCYDWEKCSASTSKCVCLLPP 865
Score = 30.2 bits (67), Expect = 8.9
Identities = 16/119 (13%), Positives = 28/119 (23%), Gaps = 16/119 (13%)
Query: 283 QCPCKENYAGDHCDT----CAQGYYNFPTCSPCECNAVGSLSDLCEVDSGNCTCRNNFAG 338
C + +G C +++ C + S C+ + C
Sbjct: 751 HCQLGQKQSGSECICMSPEEDCSHHSEDLCVFDTDSNDYFTSPACKFLAEKCLNNQQLHF 810
Query: 339 RTCDSCADGYYNYPRCTSCQCAFHYAT------------GNCAEGTGKCECRPEYTKPD 385
SC DG + + + C+ T KC C
Sbjct: 811 LHIGSCQDGRQLEWGLERTRLSSNSTKKESCGYDTCYDWEKCSASTSKCVCLLPPQCFK 869
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 38.4 bits (89), Expect = 0.022
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 596 PDCKLCGCSAVGSSSTACDVSGKCPCLVNFGGKTCSQCSPGFYQYPQCKACNCDSHGNIG 655
+C+ A +S + C GK C CSPG ++ C+ C+ G
Sbjct: 379 EECRATVQPAQTLTSECSRLCRNGYCTPT--GKCC--CSPG-WEGDFCRTAKCEPACRHG 433
Query: 656 VSCDDDGKCQCEKNFGGDRCER 677
C KC C+K + G +CE+
Sbjct: 434 GVCVRPNKCLCKKGYLGPQCEQ 455
Score = 35.3 bits (81), Expect = 0.20
Identities = 18/81 (22%), Positives = 26/81 (32%), Gaps = 5/81 (6%)
Query: 306 PTCSPCECNAVGSLSDLCEVDSGNCTCRNNFAGRTCDSCADGYYNYPRCTSCQCAFHYAT 365
P +L+ C N C G+ C C+ G+ C + +C
Sbjct: 378 PEECRATVQPAQTLTSECSRLCRNGYC--TPTGKCC--CSPGWEG-DFCRTAKCEPACRH 432
Query: 366 GNCAEGTGKCECRPEYTKPDC 386
G KC C+ Y P C
Sbjct: 433 GGVCVRPNKCLCKKGYLGPQC 453
Score = 34.6 bits (79), Expect = 0.38
Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 13/65 (20%)
Query: 658 CDDDGKCQCEKNFGGDRCERCKEGLYNFPICEACNCDSHGNIGVSCDDDGKCQCEKNFGG 717
C GKC C + GD C K C+ G C KC C+K + G
Sbjct: 404 CTPTGKCCCSPGWEGDFCRTAK-------------CEPACRHGGVCVRPNKCLCKKGYLG 450
Query: 718 DRCER 722
+CE+
Sbjct: 451 PQCEQ 455
Score = 33.0 bits (75), Expect = 1.1
Identities = 22/104 (21%), Positives = 34/104 (32%), Gaps = 16/104 (15%)
Query: 339 RTCDSCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPN 398
+ + +C+ G C TGKC C P + C +
Sbjct: 375 PLMPEECRATVQPAQTLTSECSRLCRNGYCT-PTGKCCCSPGWEGDFCRTA--------K 425
Query: 399 CEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYN 442
CEP C G P +C CK+ Y G C+ +++
Sbjct: 426 CEP-ACRHGGVC---VRP---NKCLCKKGYLGPQCEQVDHHHHH 462
Score = 32.3 bits (73), Expect = 1.5
Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 16/85 (18%)
Query: 220 QCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPA 279
+C+ G C TGKC C P + C + CEP C G P
Sbjct: 394 ECSRLCRNGYCT-PTGKCCCSPGWEGDFCRTA--------KCEP-ACRHGGVC---VRP- 439
Query: 280 SGQQCPCKENYAGDHCDTCAQGYYN 304
+C CK+ Y G C+ +++
Sbjct: 440 --NKCLCKKGYLGPQCEQVDHHHHH 462
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 37.6 bits (86), Expect = 0.039
Identities = 18/127 (14%), Positives = 30/127 (23%), Gaps = 19/127 (14%)
Query: 1213 CEQFGGQCQCKPNVIGRRC----------EMCATGYYGFPDCHPCNCPFTAVCDSYTGEC 1262
+ + +V RC + A + + C C C
Sbjct: 8 AARRLDESLSAGSVQRARCASRCLSLQITRISAFFQHFQNNGSLVWCQNHKQCSKCLEPC 67
Query: 1263 ICAARVIGKKCDQ-CEPNTFGYDPIIGCEECNCHPHGVNGTQQCDLFDGSCSCKENIVGR 1321
+ + +C CEP + +C + G C E
Sbjct: 68 KESGDLRKHQCQSFCEP---LFPKKSYECLTSCEFLKYILLVKQ----GDCPAPEK-ASG 119
Query: 1322 TCDHCVE 1328
CVE
Sbjct: 120 FAAACVE 126
Score = 36.9 bits (84), Expect = 0.068
Identities = 24/157 (15%), Positives = 47/157 (29%), Gaps = 22/157 (14%)
Query: 1305 CDLFDGSCSCKENIVGRTCD-HCVEGHWSFPYCVPCECDLRGTTIDICNQGTAECYCKKN 1363
++ C C+ + + ++ +C+ +
Sbjct: 8 AARRLDESLSAGSVQRARCASRCLSLQIT-RISAFFQHFQNNGSL---------VWCQNH 57
Query: 1364 VYGAAC-DVCKEGTFDIQADNVDGCTRCFCFGKTTKCSSSNLYRSQLVYCKPCEC----- 1417
+ C + CKE + C K+ +C +S + ++ K +C
Sbjct: 58 KQCSKCLEPCKESGDLRKHQCQSFC-EPLFPKKSYECLTSCEFLKYILLVKQGDCPAPEK 116
Query: 1418 SGNINRTDPGSCDSVTGECTG---CLFNSAGDSCQYC 1451
+ SC V EC+G C N G +CQ
Sbjct: 117 ASGFAAACVESC-EVDNECSGVKKCCSNGCGHTCQVP 152
Score = 33.0 bits (74), Expect = 1.2
Identities = 27/166 (16%), Positives = 38/166 (22%), Gaps = 30/166 (18%)
Query: 567 CDKTNGSCLCKEGYTGARCDQCKAGYYGYPDCKLCGCSAVGSSSTACDVSGKCPCLV-NF 625
+ L ARC C + S LV
Sbjct: 8 AARRLDESLSAGSVQRARCA------------SRCLSLQITRISAFFQHFQNNGSLVWCQ 55
Query: 626 GGKTCSQCSPGFYQYPQCKACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCE----RCKEG 681
K CS+C + + C S + +C F C
Sbjct: 56 NHKQCSKCLEPCKESGDLRKHQCQSF-CEPLFPKKSYECLTSCEFLKYILLVKQGDCPAP 114
Query: 682 LYNFPICEACNCDSHGNIGVSCDDDGKC----QCEKNFGGDRCERC 723
AC SC+ D +C +C N G C+
Sbjct: 115 EKASGFAAAC--------VESCEVDNECSGVKKCCSNGCGHTCQVP 152
Score = 32.6 bits (73), Expect = 1.4
Identities = 22/158 (13%), Positives = 44/158 (27%), Gaps = 5/158 (3%)
Query: 1183 CKKATFSMTISFLHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRC-EMCATGYYGF 1241
C + +F + +C + C+ ++ +C C +
Sbjct: 30 CLSLQITRISAFFQHFQNNGSLVWCQNHKQCSKCLEPCKESGDLRKHQCQSFCEPLFPKK 89
Query: 1242 PDCHPCNCPF-TAVCDSYTGECICAARVIGKKCDQCEPNTFGYDPIIGCEECNCHPHGVN 1300
+C F + G+C + G C + + G ++C + G
Sbjct: 90 SYECLTSCEFLKYILLVKQGDCPAPEKASG-FAAACVESCEVDNECSGVKKCCSNGCGHT 148
Query: 1301 GTQQCDLFDGSCSC--KENIVGRTCDHCVEGHWSFPYC 1336
L+ G KE +E WS +
Sbjct: 149 CQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFN 186
Score = 31.9 bits (71), Expect = 2.4
Identities = 18/119 (15%), Positives = 27/119 (22%), Gaps = 7/119 (5%)
Query: 272 LDFYCEPASGQQCPCKENYAGDHCDT-CAQGYYNFPTCSPCECNAVGSLSDLCEVDSGNC 330
LD S Q+ C A + S C C C
Sbjct: 12 LDESLSAGSVQRARCASRCLSLQITRISAFFQHFQNNGSLVWCQN----HKQCSKCLEPC 67
Query: 331 TCRNNFAGRTCDSCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSC 389
+ C S + + + C + + G C PE +C
Sbjct: 68 KESGDLRKHQCQSFCEPLFP-KKSYECLTSCEFLKYILLVKQGDCPA-PEKASGFAAAC 124
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 37.5 bits (86), Expect = 0.055
Identities = 51/379 (13%), Positives = 94/379 (24%), Gaps = 37/379 (9%)
Query: 86 IGGRCRCNGHADVCDILDPEDPYHRIC-----RCQHNTCGHNCEVCCPGYEQKAWRQSQS 140
I RC+G D + D + + C RC C VC + S
Sbjct: 80 IPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEAS 139
Query: 141 NKPFSCEPCNCHGHADKCVYDPMVDEKRLSVDIQGNYEGGGVCQECRDNTEGINCHQRVA 200
+C P + ++ C+ + +C D ++ R
Sbjct: 140 CPVLTCGPASFQCNSSTCIPQLWACDN---------------DPDCEDGSDEWPQRCRGL 184
Query: 201 GYYRPYGKHLNETDVCQPCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPN 260
++ C + FH +G C + +C+ P+ D +
Sbjct: 185 YVFQGDSSP------CSAFE--FHCLSGECIHSSWRCDGGPDC--KDKSDEENCAVATCR 234
Query: 261 CEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFPTCSPCECNAVGSLS 320
+ +C + + C + G T +G F C EC + +
Sbjct: 235 PDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKF-KCHSGECITLDKVC 293
Query: 321 DLCEV-----DSGNCTCRNNFAGRTCDSCADGYYNYPRCTSCQCAFHYATGNCAEGTGKC 375
++ D C N C+ + C C +
Sbjct: 294 NMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDID 353
Query: 376 ECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDT 435
EC+ T G + CE T + +
Sbjct: 354 ECQDPDTCSQLCVNLEGGY-KCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLD 412
Query: 436 CAQGYYNFPTCSQITLPDV 454
++ P + D
Sbjct: 413 RSEYTSLIPNLRNVVALDT 431
Score = 31.7 bits (71), Expect = 2.7
Identities = 25/219 (11%), Positives = 44/219 (20%), Gaps = 7/219 (3%)
Query: 216 CQPCQCAFHY---ATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTL 272
C C + GNC G+ +C+ + KCH +
Sbjct: 228 CAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECI 287
Query: 273 DFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFPTCSPCECNAVGSLSDLCEVDSGNCTC 332
+ C + C T N C +G C G
Sbjct: 288 TLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIG---YECLCPDGFQ-L 343
Query: 333 RNNFAGRTCDSCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFG 392
D C D C + + + + +
Sbjct: 344 VAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNR 403
Query: 393 YFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGD 431
+ + + + A + Y D
Sbjct: 404 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSD 442
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.060
Identities = 46/338 (13%), Positives = 90/338 (26%), Gaps = 95/338 (28%)
Query: 1473 EGVLKTFAGC--GSLPAGELCECKPKVQGRICDECR--PLYW-NLKASNPDGCEDCDCYT 1527
+ +L + C LP E+ P+ I + R W N K N C
Sbjct: 304 KSLLLKYLDCRPQDLPR-EVLTTNPRRLSIIAESIRDGLATWDNWKHVN--------CDK 354
Query: 1528 LGTIGGIKNC----NPKSGQCVCKATAMNRKCDACV-DGTYA-LQDNNLFGCTECACDIG 1581
L TI I++ P + + ++ A + + + + + +
Sbjct: 355 LTTI--IESSLNVLEPAEYRKMFDRLSVFPP-SAHIPTILLSLIWFDVIKSDVM---VV- 407
Query: 1582 GSINNLCNKSLIWMSSFRMVSFTKLSSQSNIVLPGLVVEQFLNLCPTEFDMDV---LIQN 1638
+N L SL+ K +S I +P + E + + ++ +
Sbjct: 408 --VNKLHKYSLV----------EKQPKESTISIPSI---YLELKVKLENEYALHRSIVDH 452
Query: 1639 GQFYEAQLPDCQHNTLGDQCEQ---CQPGYH-GNATQGTMADCL-------------ICA 1681
Y + + +Q G+H N I
Sbjct: 453 ---YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509
Query: 1682 CPLPITSNNFASGCDVSEDGCHMNGTLNFYCEPTSGQQCPCKENYAGDHCDTCAQACN-- 1739
N S + + L FY + Y D+ + N
Sbjct: 510 DSTAW--NASGSILNTLQQ-------LKFY------------KPYICDNDPKYERLVNAI 548
Query: 1740 ---CHGHADKCVYDPMVDEKRLSVDIQGNYEGGGVCQE 1774
+ + D R+++ E + +E
Sbjct: 549 LDFLPKIEENLICSKYTDLLRIAL----MAEDEAIFEE 582
Score = 37.1 bits (85), Expect = 0.071
Identities = 27/158 (17%), Positives = 57/158 (36%), Gaps = 25/158 (15%)
Query: 10 WALERSADNGITISLLDHRPSMKN----F--FNSTRLQEWTRATNVRLRLLRTKNLLGH- 62
E+ + +T ++ R + N F +N +RLQ + + L L KN+L
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 63 --------LMSMADQDPTTTRRYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRC 114
+ + + I +++ CN V ++L + ++I
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK---NCNSPETVLEML--QKLLYQIDPN 212
Query: 115 QHNTCGHNCEVCCPGYEQKAW-RQSQSNKPFSCEPCNC 151
+ H+ + + +A R+ +KP+ NC
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPY----ENC 246
Score = 34.4 bits (78), Expect = 0.46
Identities = 27/283 (9%), Positives = 58/283 (20%), Gaps = 120/283 (42%)
Query: 12 LERSADNG--ITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQ 69
L R +S++ S+++ W +L ++ S+
Sbjct: 318 LPREVLTTNPRRLSIIAE--SIRDGLA--TWDNWKHVNCDKL-----TTIIE--SSLNVL 366
Query: 70 DPTTTRRYFYSIKDISIGGRCRCNGHADVCDILDPED---PYHRICRCQHNTCGHNCEVC 126
+P R+ F + P P +
Sbjct: 367 EPAEYRKMFDR------------------LSVF-PPSAHIPTILLSL------------- 394
Query: 127 CPGYEQKAWRQSQSNKPFSCEPCNCHGHADKCVYDPMVDE--KRLSVDIQGNYEGGGVCQ 184
W + +K +V++ K ++ I Y +
Sbjct: 395 -------IWFDVIKSDVMVV--------VNKLHKYSLVEKQPKESTISIPSIY-----LE 434
Query: 185 ECRDNTEGINCHQRVAGYYRPYGKHLNETDVCQPCQCAFHYATGNCAEGTGKCECRPEYT 244
H+ + +Y K +
Sbjct: 435 LKVKLENEYALHRSIVDHYNIP-----------------------------KTFDSDDLI 465
Query: 245 KPDCNSCAFGYFGYPNCEPCKCHMNGT-------------LDF 274
P + + + G+ H+ LDF
Sbjct: 466 PPYLDQYFYSHIGH--------HLKNIEHPERMTLFRMVFLDF 500
Score = 31.4 bits (70), Expect = 4.3
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 16/66 (24%)
Query: 1816 TGQTCNQPLQAHYYPTLHHYQ--F-------EIEDGHTPAFSPSEIIQEVNIQEPSIYQL 1866
TG+ Q Y L ++ F +++D S E I + I
Sbjct: 11 TGE-----HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE-IDHI-IMSKDAVSG 63
Query: 1867 ILFIFI 1872
L +F
Sbjct: 64 TLRLFW 69
>3i2t_A Epidermal growth factor receptor, isoform A; EGFR, ectodomain,
unliganded, autoinhibited, ATP nucleotide-binding,
tyrosine-protein kinase; HET: NDG NAG BMA; 2.70A
{Drosophila melanogaster} PDB: 3ltf_A* 3ltg_A
Length = 551
Score = 36.9 bits (84), Expect = 0.071
Identities = 25/201 (12%), Positives = 37/201 (18%), Gaps = 5/201 (2%)
Query: 216 CQPCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFY 275
+ H + + G G C+ CA G P C
Sbjct: 161 PERECPKCHESCTHGCWGEGPKNCQKFSKLTCSPQCAGGRCYGPKPRECCHLFCAGG--- 217
Query: 276 CEPASGQQC-PCKENYAGDHC-DTCAQGYYNFPTCSPCECNAVGSLSDLCEVDSGNCTCR 333
C + + C CK + C + C PT E N G +
Sbjct: 218 CTGPTQKDCIACKNFFDEGVCKEECPPMRKYNPTTYVLETNPEGKYAYGATCVKECPGHL 277
Query: 334 NNFAGRTCDSCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGY 393
G SC + T +
Sbjct: 278 LRDNGACVRSCPQDKMDKGGECVPCNGPCPKTCPGVTVLHAGNIDSFRNCTVIDGNIRIL 337
Query: 394 FGYPNCEPCKCHMNGTLDFYC 414
+ Y
Sbjct: 338 DQTFSGFQDVYANYTMGPRYI 358
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 36.5 bits (83), Expect = 0.084
Identities = 17/106 (16%), Positives = 30/106 (28%), Gaps = 4/106 (3%)
Query: 547 AVTNARQVCNCDIRGTEAGICDKTNGSCLCKEGYTGARCD--QCKAGYYGYPDCKLCGCS 604
A+ N C + G C GSC+C E + G CD + + +
Sbjct: 527 AIDNVYIGDGCLDMCSGHGRCV--QGSCVCDEQWGGLYCDEPETSLPTQLKDNFNRAPSN 584
Query: 605 AVGSSSTACDVSGKCPCLVNFGGKTCSQCSPGFYQYPQCKACNCDS 650
+ + +S C + + S N +
Sbjct: 585 QNWLTVSGGKLSTVCGAVASGLALHFSGGCSRLLVTVDLNLTNAEF 630
Score = 32.3 bits (72), Expect = 1.9
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 5/51 (9%)
Query: 636 GFYQYPQCKACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCERCKEGLYNFP 686
Y PQC C HG SC + KC C+ + G C+ +
Sbjct: 181 NVYIGPQC-EEMCYGHG----SCINGTKCICDPGYSGPTCKISTKNPDFLK 226
Score = 30.0 bits (66), Expect = 8.8
Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 5/67 (7%)
Query: 665 QCEKNFGGDRCERCKEGLYNFPICEACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCERCK 724
Q G + +Y P CE C HG SC + KC C+ + G C+
Sbjct: 165 QGFYPAGSQPVTWAIDNVYIGPQCE-EMCYGHG----SCINGTKCICDPGYSGPTCKIST 219
Query: 725 EGLYNFP 731
+
Sbjct: 220 KNPDFLK 226
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY
crystallography, neuregulins, heparin-binding, cell CY
signaling protein; HET: NAG NDG; 2.40A {Homo sapiens}
PDB: 3u2p_A*
Length = 617
Score = 35.4 bits (80), Expect = 0.22
Identities = 45/399 (11%), Positives = 93/399 (23%), Gaps = 18/399 (4%)
Query: 1350 ICNQGTAECYCKKNVYGAACDVCKEGTFDIQADNVDGCTRCFCFGKTTKCSSSNLYRSQL 1409
+ N + + C C + + + + Y +
Sbjct: 143 VRNPWPSNLTLVSTNGSSGCGRCHKSCTGRCWGPTENHCQTLTRTVCAEQCDGRCYGPYV 202
Query: 1410 VYCKPCECSGNINRTDPGSCDSVTGECTGCLFNSAGDSC-QYCAPGYYGNAVSLKNCVKC 1468
C EC+G + C + C+ + +C C + N + +
Sbjct: 203 SDCCHRECAGGCSGPKDTDCFA-------CMNFNDSGACVTQCPQTFVYNPTTFQLEHNF 255
Query: 1469 NCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDECRPLYWNLKASNPDGCEDCDCYTL 1528
N C + C + K + CD
Sbjct: 256 NAKYTYGAFCVKKCPHNFVVDSSSCVRACPSSKMEVEENGIKMCKPCTDICPKACDGIGT 315
Query: 1529 GTIGGIKNCNPKSGQCVCKATAMNRKCDACVDGTYALQDNNLFGCTECACDIGGSINNLC 1588
G++ + + + T +N V G + N + ++ ++ +
Sbjct: 316 GSLMSAQTVDSSNIDKFINCTKINGNLIFLVTGIHGDPYNAIEAIDPEKLNVFRTVREIT 375
Query: 1589 NKSLIWMSSFRMVSFTKLSSQSNIVLPGLVVEQFLNLCPTEFDMDVLIQNGQFYEAQLPD 1648
I M F+ S+ I L L + ++ Q
Sbjct: 376 GFLNIQSWPPNMTDFSVFSNLVTIGGRVLYSGLSLLI----------LKQQGITSLQFQS 425
Query: 1649 CQHNTLGDQCEQCQPGYHGNATQGTMADCLICACPLPITSNNFASGCDVSEDGCHMNGTL 1708
+ + G+ T + I N A C C+ +
Sbjct: 426 LKEISAGNIYITDNSNLCYYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLCSS 485
Query: 1709 NFYCEPTSGQQCPCKENYAGDHCDTCAQACNCHGHADKC 1747
+ P Q C+ G C + +
Sbjct: 486 DGCWGPGPDQCLSCRRFSRGRICIESCNLYDGEFREFEN 524
Score = 34.2 bits (77), Expect = 0.50
Identities = 31/340 (9%), Positives = 62/340 (18%), Gaps = 8/340 (2%)
Query: 1171 NHFYLDNSTSEFCKKATFSMTISFLHEALPCQCDIDGSKS-------FECEQFGGQCQCK 1223
+F + C + +F E G+ F + C
Sbjct: 226 MNFNDSGACVTQCPQTFVYNPTTFQLEHNFNAKYTYGAFCVKKCPHNFVVDSSSCVRACP 285
Query: 1224 PNVIGRRCEMCATGYYGFPDCHPCNCPFTAVCDSYTGECICAARVIGKKCDQCEPNTFGY 1283
+ + C + C + N
Sbjct: 286 SSKMEVEENGIKMCKPCTDICPKACDGIGTGSLMSAQTVDSSNIDKFINCTKINGNLIFL 345
Query: 1284 DPIIGCEECNCHPHGVNGTQQCDLFDGSCSCKENIVGRTCD-HCVEGHWSFPYCVPCECD 1342
I + N + NI + +
Sbjct: 346 VTGIHGDPYNAIEAIDPEKLNVFRTVREITGFLNIQSWPPNMTDFSVFSNLVTIGGRVLY 405
Query: 1343 LRGTTIDICNQGTAECYCKKNVYGAACDVCKEGTFDIQADNVDGCTRCFCFGKTTKCSSS 1402
+ + + QG + +A ++ ++ + T F
Sbjct: 406 SGLSLLILKQQGITSLQFQSLKEISAGNIYITDNSNLCYYHTINWTTLFSTINQRIVIRD 465
Query: 1403 NLYRSQLVYCKPCECSGNINRTDPGSCDSVTGECTGCLFNSAGDSCQYCAPGYYGNAVSL 1462
N + G C G + +
Sbjct: 466 NRKAENCTAEGMVCNHLCSSDGCWGPGPDQCLSCRRFSRGRICIESCNLYDGEFREFEND 525
Query: 1463 KNCVKCNCNPEGVLKTFAGCGSLPAGELCECKPKVQGRIC 1502
CV+C+ E + C +C G C
Sbjct: 526 SICVECDPQCEKMEDGLLTCHGPGPDNCTKCSHFKDGPNC 565
Score = 32.7 bits (73), Expect = 1.3
Identities = 39/339 (11%), Positives = 65/339 (19%), Gaps = 16/339 (4%)
Query: 114 CQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSCEPCNCHGHADKCVYDPMVDEKRLSVDI 173
C + C CP + + + + CV + S
Sbjct: 225 CMNFNDSGACVTQCPQTFV----YNPTTFQLEHNFNAKYTYGAFCVKKCPHNFVVDSSSC 280
Query: 174 QGNYEGGGVCQECRDNTEGINCHQRVAGYYRPYGKHLNETDVCQPCQCAFHYATGNCAEG 233
+ E C G + + G
Sbjct: 281 VRACPSSKMEVEENGIKMCKPCTDICPKACDGIGTGSLMSAQTVDSSNIDKFINCTKING 340
Query: 234 TGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGD 293
+ P A + + G L+ P + N
Sbjct: 341 NLIFLVTGIHGDPYNAIEAIDPEKLNVFRTVRE-ITGFLNIQSWPPNMTDFSVFSNLVTI 399
Query: 294 HCDTCAQGYYNFPTCSPCECNAVGSLSDLCEVDSGNCTCRNNFAGRTCDSCADGYYNYPR 353
G + L E+ +GN +N + N+
Sbjct: 400 GGRVLYSGLSLLILKQQGITSL--QFQSLKEISAGNIYITDNSNLCYYHTI-----NWTT 452
Query: 354 CTSCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCK-CHMNGTLDF 412
S N C C+S G C C+
Sbjct: 453 LFSTINQRIVIRDNRK--AENCTAEGMVCNHLCSSDGCWGPGPDQCLSCRRFSRGRICIE 510
Query: 413 YCEPASGQQCPCKENYAGDHCD-TCAQGYYNFPTCSQIT 450
C G+ + + CD C + TC
Sbjct: 511 SCNLYDGEFREFENDSICVECDPQCEKMEDGLLTCHGPG 549
Score = 32.7 bits (73), Expect = 1.4
Identities = 31/354 (8%), Positives = 62/354 (17%), Gaps = 14/354 (3%)
Query: 99 CDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSCEPCNCHGHADKC 158
C +P N C + S+ +C +
Sbjct: 238 CPQTFVYNPTTFQLEHNFNAKYTYGAFCVKKCPHN-FVVDSSSCVRACPSSKMEVEENGI 296
Query: 159 VYDPMVDEKRLSVDIQGNYEGGGVCQECRDNTEGINCHQRV---AGYYRPYGKHLNETDV 215
+ Q + + + G H + +
Sbjct: 297 KMCKPCTDICPKACDGIGTGSLMSAQTVDSSNIDKFINCTKINGNLIFLVTGIHGDPYNA 356
Query: 216 CQPCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFY 275
+ E TG + S L
Sbjct: 357 IEAIDPEKLNVFRTVREITGFLNIQSWPPNMTDFSVFSNL--VTIGGRVLYSGLSLLILK 414
Query: 276 CEPASGQQCPCKENYAGDHCDTCAQGYYNFPTCSPCECNAVGSLSDLCEVDSGNCTCRNN 335
+ + Q + + + + + D+
Sbjct: 415 QQGITSLQFQSLKEISAGNIYITDNSNLCYYHTINWTTLFSTINQRIVIRDNRKAENCTA 474
Query: 336 FAGRTCDSCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFG 395
C+ P C ++ G + + + C
Sbjct: 475 EGMVCNHLCSSDGCWGPGPDQCLSCRRFSRGRICIESCNLYDGEFREFENDSIC------ 528
Query: 396 YPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHC-DTCAQGYYNFPTCSQ 448
C+P M L P C G +C + C G +
Sbjct: 529 -VECDPQCEKMEDGLLTCHGPGPDNCTKCSHFKDGPNCVEKCPDGLQGANSFIF 581
Score = 30.4 bits (67), Expect = 6.9
Identities = 30/286 (10%), Positives = 50/286 (17%)
Query: 571 NGSCLCKEGYTGARCDQCKAGYYGYPDCKLCGCSAVGSSSTACDVSGKCPCLVNFGGKTC 630
C+ +QC YG C G S D N G
Sbjct: 176 PTENHCQTLTRTVCAEQCDGRCYGPYVSDCCHRECAGGCSGPKDTDCFACMNFNDSGACV 235
Query: 631 SQCSPGFYQYPQCKACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCERCKEGLYNFPICEA 690
+QC F P + + KC C R
Sbjct: 236 TQCPQTFVYNPTTFQLEHNFNAKYTYGAFCVKKCPHNFVVDSSSCVRACPSSKMEVEENG 295
Query: 691 CNCDSHGNIGVSCDDDGKCQCEKNFGGDRCERCKEGLYNFPICEECNCNPEGVLKTFAGC 750
DG + N +
Sbjct: 296 IKMCKPCTDICPKACDGIGTGSLMSAQTVDSSNIDKFINCTKINGNLIFLVTGIHGDPYN 355
Query: 751 GSLPAGELCECKPKVQGRICDECRPLYWNLKASNPDGCEDCDCYTLGTIGGIKNCNPKSG 810
+ I W ++ + + +
Sbjct: 356 AIEAIDPEKLNVFRTVREITGFLNIQSWPPNMTDFSVFSNLVTIGGRVLYSGLSLLILKQ 415
Query: 811 QCVCKATAMNRKCDACMDGTYALQDNNLFGCTECACDIGGSINNLC 856
Q + + K + + N + T + +IN
Sbjct: 416 QGITSLQFQSLKEISAGNIYITDNSNLCYYHTINWTTLFSTINQRI 461
Score = 30.4 bits (67), Expect = 7.2
Identities = 26/334 (7%), Positives = 55/334 (16%), Gaps = 7/334 (2%)
Query: 114 CQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSCEPCNCHGHADKCVYDPMVDEKRLSVDI 173
C C + W ++++ +C + D
Sbjct: 153 LVSTNGSSGCGRCHKSCTGRCWGPTENHCQTLTRTVCAEQCDGRCYGPYVSDCCHRECAG 212
Query: 174 QGNYEGGGVCQECRDNTEGINCHQRVAGYYRPYGKHLNETDVCQPCQCAFHYATGNCAEG 233
+ C C + + C + + + F+ A
Sbjct: 213 GCSGPKDTDCFACMNFNDSGACVTQ-------CPQTFVYNPTTFQLEHNFNAKYTYGAFC 265
Query: 234 TGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGD 293
KC C K T D
Sbjct: 266 VKKCPHNFVVDSSSCVRACPSSKMEVEENGIKMCKPCTDICPKACDGIGTGSLMSAQTVD 325
Query: 294 HCDTCAQGYYNFPTCSPCECNAVGSLSDLCEVDSGNCTCRNNFAGRTCDSCADGYYNYPR 353
+ + +++ + N F + ++P
Sbjct: 326 SSNIDKFINCTKINGNLIFLVTGIHGDPYNAIEAIDPEKLNVFRTVREITGFLNIQSWPP 385
Query: 354 CTSCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFY 413
+ F + S F + N L +Y
Sbjct: 386 NMTDFSVFSNLVTIGGRVLYSGLSLLILKQQGITSLQFQSLKEISAGNIYITDNSNLCYY 445
Query: 414 CEPASGQQCPCKENYAGDHCDTCAQGYYNFPTCS 447
+ A+
Sbjct: 446 HTINWTTLFSTINQRIVIRDNRKAENCTAEGMVC 479
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 34.6 bits (78), Expect = 0.28
Identities = 17/88 (19%), Positives = 26/88 (29%), Gaps = 4/88 (4%)
Query: 539 VRKDTRALAVTNARQVCNCDIRGTEAGICDKTNGSCLCKEGYTGARCDQCK--AGYYGYP 596
+K+ + C + G C +G C C GYT A+ +
Sbjct: 176 SQKNVPPFGLDGVYISEPCPSYCSGHGDC--ISGVCFCDLGYTAAQGTCVSNTPNHSEMF 233
Query: 597 DCKLCGCSAVGSSSTACDVSGKCPCLVN 624
D S + T V C L +
Sbjct: 234 DRFEGKLSPLWYKITGGQVGTGCGTLND 261
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 34.8 bits (79), Expect = 0.29
Identities = 45/341 (13%), Positives = 74/341 (21%), Gaps = 29/341 (8%)
Query: 91 RCNGHADVCDILDPEDPYHRIC-----RCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFS 145
RC+G D + D + + C RC C VC + S +
Sbjct: 67 RCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLT 126
Query: 146 CEPCNCHGHADKCVYDPMVDEKRLS----VDIQGNYEGGGVCQECRDNTEGINCHQRVAG 201
C P + ++ C+ + D G + + ++G
Sbjct: 127 CGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSG 186
Query: 202 YYRPYGKHLNETDVCQPCQCAFHYATGNCAEGTGKC---ECRPEYTKPDC-NSCAFGYFG 257
+ C+ + A C +C C + D C
Sbjct: 187 ECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDE 246
Query: 258 YPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQG----YYNFPTCSPCEC 313
C F C +C + + C T +
Sbjct: 247 VGCVNVTLCEGPNK--FKC---HSGEC-ITLDKVCNMARDCRDWSDEPIKECGTNECLDN 300
Query: 314 NAVGSLSDLCEVDSGNCTCRNNFAGRTCDSCADGYYNYPRCTSCQCAFHYATGNCAEGTG 373
N S C C + F C D T Q + G
Sbjct: 301 NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGY------ 354
Query: 374 KCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYC 414
KC+C + H +
Sbjct: 355 KCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDR 395
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK;
2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B*
1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B*
2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B*
3maa_B* 1cul_B*
Length = 220
Score = 33.8 bits (78), Expect = 0.39
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 1600 MVSFTKLSSQSNIVLPGLVVEQFLNLCPTEFDMDVLIQNGQFY 1642
+ F + ++S++ GL + LN +FD L+ +F
Sbjct: 22 IPDFKEFYTESDVNKEGLECLRLLNEIIADFDD--LLSKPKFS 62
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.60
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 8/30 (26%)
Query: 1013 ETKKIEAESGLGPLATQLPGS---LADNKT 1039
KK++ + L A S LA T
Sbjct: 21 ALKKLQ--ASLKLYA---DDSAPALAIKAT 45
>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl,
rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP
signaling protein; 2.01A {Mus musculus} PDB: 3me2_R
3qbq_B 3nzy_B
Length = 216
Score = 32.9 bits (74), Expect = 0.65
Identities = 25/155 (16%), Positives = 36/155 (23%), Gaps = 25/155 (16%)
Query: 215 VCQPCQCAFHYATGN-----CAEGTGKCECRPEYTKPDCNSCAFGYF-----GYPNCEPC 264
V PC HY C G + C C + C
Sbjct: 29 VTPPCTQERHYEHLGRCCSRCEPGKYLSSKCTPTSDSVCLPCGPDEYLDTWNEEDKCLLH 88
Query: 265 KCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFPTCSPCECNAVGSLSDLCE 324
K G +P + C GY+ C C N C
Sbjct: 89 KVCDAGKALVAVDPGNHTA---------PRRCACTAGYHWNSDCECCRRNTE------CA 133
Query: 325 VDSGNCTCRNNFAGRTCDSCADGYYNYPRCTSCQC 359
G C C G+++ ++ +C
Sbjct: 134 PGFGAQHPLQLNKDTVCTPCLLGFFSDVFSSTDKC 168
Score = 29.4 bits (65), Expect = 9.8
Identities = 27/169 (15%), Positives = 51/169 (30%), Gaps = 20/169 (11%)
Query: 195 CHQRVAGYYRPYGKHLNETDVCQPCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFG 254
C Y ++ + + C + T C C G
Sbjct: 67 CLPCGPDEYLDTWNEEDKCLLHKVCDAGKALVAVDPGNHTAPRRCA----------CTAG 116
Query: 255 YFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFPTCSPCECN 314
Y +CE C+ + C P G Q P + N C C G+++ S +C
Sbjct: 117 YHWNSDCECCRRNTE------CAPGFGAQHPLQLN-KDTVCTPCLLGFFSDVFSSTDKCK 169
Query: 315 AVGSLSDLCEVDSGNCTCRNNFAGRTCDSCADGYYNYPRCTSCQCAFHY 363
+ + L ++++ T ++ C S + + H+
Sbjct: 170 PWTNCTLLGKLEAHQGTTESD---VVCSSSMTLRRPPKEAQALEHHHHH 215
>2uvo_A Agglutinin isolectin 1; carbohydrate-binding protein, hevein
domain, chitin-binding, GERM agglutinin, chitin-binding
protein; HET: NDG NAG GOL; 1.40A {Triticum aestivum}
PDB: 1wgc_A* 2cwg_A* 2uwg_A* 2x3t_A* 4aml_A* 7wga_A
9wga_A 2wgc_A 1wgt_A 1k7t_A* 1k7v_A* 1k7u_A 2uwz_A*
2x52_A* 1t0w_A*
Length = 171
Score = 32.3 bits (73), Expect = 0.70
Identities = 26/157 (16%), Positives = 37/157 (23%), Gaps = 6/157 (3%)
Query: 565 GICDKTNGSCLCKEGYTGARCDQCKAGYYGYPDCKLCGCSAVGSSSTACDVSGKCPCLVN 624
+C G C Y G C + C A +++ C G C
Sbjct: 15 NLCCSQYGYCGMGGDYCGKGC--QNGACWTSKRCGSQAGGATCTNNQCCSQYGYCGFGAE 72
Query: 625 FGGKTCSQCSPGFYQYPQCKACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCERCKEGLYN 684
+ G C +C + + C G C F G C
Sbjct: 73 YCGAGCQGGPC--RADIKCGSQAGGKLCPNNLCCSQWGFCGLGSEFCGGGC--QSGACST 128
Query: 685 FPICEACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCE 721
C C G C + G C+
Sbjct: 129 DKPCGKDAGGRVCTNNYCCSKWGSCGIGPGYCGAGCQ 165
>3hh2_C Follistatin; protein-protein complex, TB domain, cystine knot
motif, TGF- fold, disulfide linked dimer, CLE PAIR of
basic residues, cytokine; HET: CIT; 2.15A {Homo sapiens}
PDB: 2b0u_C* 2p6a_D
Length = 288
Score = 33.1 bits (74), Expect = 0.74
Identities = 29/209 (13%), Positives = 48/209 (22%), Gaps = 12/209 (5%)
Query: 214 DVCQPCQCAFHYATGNCAEGTGKCECRPEYTKPDCNS--CAFGYFGYPN-----CEPCKC 266
+ C+ C + +C C P+ + C Y N CK
Sbjct: 64 ETCENVDCGPGKKCRMNKKNKPRCVCAPDCSNITWKGPVCGLDGKTYRNECALLKARCKE 123
Query: 267 HMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFPTCSPCECNAVGSLSDLCEVD 326
+ + G+ + TC N C C S +
Sbjct: 124 QPELEVQYQ-----GRCKKTCRDVFCPGSSTCVVDQTNNAYCVTCNRICPEPASSEQYLC 178
Query: 327 SGNCTCRNNFAGRTCDSCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCECRPEYTKPDC 386
+ ++ +C G G KC + + C
Sbjct: 179 GNDGVTYSSACHLRKATCLLGRSIGLAYEGKCIKAKSCEDIQCTGGKKCLWDFKVGRGRC 238
Query: 387 NSCAFGYFGYPNCEPCKCHMNGTLDFYCE 415
+ C + EP N T C
Sbjct: 239 SLCDELCPDSKSDEPVCASDNATYASECA 267
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion;
HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A*
2p28_A*
Length = 280
Score = 32.9 bits (74), Expect = 0.76
Identities = 25/103 (24%), Positives = 35/103 (33%), Gaps = 14/103 (13%)
Query: 1201 CQCDIDGSKSFECEQFG----GQCQCKPNVIGRRCEMCATGYYGFPDCHPCNCPFTAVCD 1256
C+C C G G C+C IG+ CE G C ++
Sbjct: 186 CRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIIC 245
Query: 1257 SYTGECICAARVIGKKCDQCEPNTFGYDPIIG--CEECNCHPH 1297
S G+C+C +C C + I G C E + H H
Sbjct: 246 SGLGDCVC------GQC-LCHTSDVPGKLIYGQYC-EHHHHHH 280
Score = 29.8 bits (66), Expect = 7.2
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 8/71 (11%)
Query: 646 CNCDSHGNIGVSCD-----DDGKCQCEKNFGGDRCERCKEGLYNFPICEACNCDSHGNIG 700
C C C + G C+C+ + G CE +G + + +C D++ I
Sbjct: 186 CRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSII- 244
Query: 701 VSCDDDGKCQC 711
C G C C
Sbjct: 245 --CSGLGDCVC 253
>1jma_B Herpesvirus entry mediator; V-type IG molecule and TNFR
superfamily, viral protein; HET: NAG; 2.65A {Human
herpesvirus 1} SCOP: g.24.1.1 g.24.1.1 PDB: 2aw2_B*
Length = 167
Score = 32.1 bits (72), Expect = 0.88
Identities = 30/163 (18%), Positives = 45/163 (27%), Gaps = 8/163 (4%)
Query: 259 PNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFPTCSPCECNAVGS 318
P+C+ + + C P + C E G C+ C G Y +C
Sbjct: 2 PSCKEDEYPVGSECCPKCSPGYRVKEACGEL-TGTVCEPCPPGTYIAHLNGLSKCLQCQM 60
Query: 319 -LSDLCEVDSGNCTCRNNFAGRTCDSCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCEC 377
+ S NC+ N C + C YAT + G +
Sbjct: 61 CDPAMGLRASRNCSRTEN---AVCGCSPGHFCIVQDGDHCAACRAYAT--SSPGQRVQKG 115
Query: 378 RPEYTKPDCNSCAFGYFGYP-NCEPCKCHMNGTLDFYCEPASG 419
E C +C G F E C+ + A
Sbjct: 116 GTESQDTLCQNCPPGTFSPNGTLEECQHQTKCSWLVTKAGAGT 158
>2atm_A Hyaluronoglucosaminidase; beta-alpha-barrels, hydrolase; HET: MES;
2.00A {Vespula vulgaris}
Length = 331
Score = 32.5 bits (74), Expect = 1.1
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 6/26 (23%)
Query: 1237 GYYGFPDCHPCNCPFTAVCDSYTGEC 1262
GYYG+P C F ++ EC
Sbjct: 178 GYYGYPYC------FNMSPNNLVPEC 197
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation,
structural genomics consort ATP-binding, cytoskeleton,
microtubule, motor protein, NUCL binding; 2.30A {Homo
sapiens} PDB: 3mdb_A*
Length = 124
Score = 30.7 bits (69), Expect = 1.5
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 8/71 (11%)
Query: 62 HLMSMADQDPTTTRRYFYSIKDISIGGRCRCNGHADVCDI-LDPEDPYHRICRCQHNTCG 120
L+++ + DP Y +K+ ++ G A+ DI L C + G
Sbjct: 28 FLVNL-NADPALNELLVYYLKEHTLIGS------ANSQDIQLCGMGILPEHCIIDITSEG 80
Query: 121 HNCEVCCPGYE 131
Sbjct: 81 QVMLTPQKNTR 91
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG BMA
MAN; 2.00A {Homo sapiens}
Length = 424
Score = 32.2 bits (73), Expect = 1.6
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 4/26 (15%)
Query: 1237 GYYGFPDCHPCNCPFTAVCDSYTGEC 1262
G+YGFPDC+ N F + +YTG+C
Sbjct: 181 GFYGFPDCY--NYDFLS--PNYTGQC 202
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 32.1 bits (72), Expect = 1.7
Identities = 24/138 (17%), Positives = 39/138 (28%), Gaps = 10/138 (7%)
Query: 321 DLCEVDSGNC--TCRNNFAGRTCDSCADGYYNYPRCTSCQCAFHYAT-GNC------AEG 371
+ C V++G C C+ C C GY +CQ A G C +EG
Sbjct: 4 ENCNVNNGGCAQKCQMIRGAVQCT-CHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNSEG 62
Query: 372 TGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGD 431
+C C Y P + + + + A D
Sbjct: 63 AFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALD 122
Query: 432 HCDTCAQGYYNFPTCSQI 449
+++ T +I
Sbjct: 123 FHHRRELVFWSDVTLDRI 140
Score = 30.1 bits (67), Expect = 8.3
Identities = 23/126 (18%), Positives = 30/126 (23%), Gaps = 15/126 (11%)
Query: 281 GQQCPCKENYAGDHCDTCAQGYY---NFPTCSPC-ECNAVGSLSDLCEVDSGNCTCRNNF 336
G C+ C C GY + TC EC G S C G C
Sbjct: 12 GCAQKCQMIRGAVQCT-CHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNSEGAFQC---- 66
Query: 337 AGRTCDSCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGY 396
C GY P SC+ A + P ++
Sbjct: 67 ------WCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIA 120
Query: 397 PNCEPC 402
+
Sbjct: 121 LDFHHR 126
>2hey_R Tumor necrosis factor receptor superfamily member; cytokine,
receptor-ligan complex, CO-stimulator, TNFSF; 2.00A
{Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB:
2hev_R
Length = 146
Score = 30.8 bits (69), Expect = 1.9
Identities = 20/128 (15%), Positives = 31/128 (24%), Gaps = 12/128 (9%)
Query: 626 GGKTCSQCSPGFYQYPQCKACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCERCKEGLYNF 685
+ C +C PG +C S + C C+ C
Sbjct: 15 NDRCCHECRPGNGMVSRC----SRSQNTVCRPCGPG---FYNDVVSSKPCKPCTWCNLRS 67
Query: 686 PICEACNCDSHGNIGVSCDDDGKCQCEKNFGGDRCERCKEGLYNFPICEEC----NCNPE 741
C + + C G + G C C G ++ + C NC
Sbjct: 68 GSERKQLCTATQDTVCRC-RAGTQPLDSYKPGVDCAPCPPGHFSPGDNQACKPWTNCTLA 126
Query: 742 GVLKTFAG 749
G
Sbjct: 127 GKHTLQPA 134
>3alq_R Tumor necrosis factor receptor superfamily member; ligand-receptor
complex, cytokine, cytokine-cytokine recepto; 3.00A
{Homo sapiens}
Length = 173
Score = 31.4 bits (70), Expect = 2.0
Identities = 33/166 (19%), Positives = 50/166 (30%), Gaps = 16/166 (9%)
Query: 246 PDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNF 305
++C + + C C C P + C + CD+C Y
Sbjct: 3 EPGSTCRLREYYDQTAQMC-CSK-------CSPGQHAKVFCTKTSDTV-CDSCEDSTYTQ 53
Query: 306 PTCSPCECNAVGSLSDLCEVDSGNCTCRNNFAGRTCDSCADGYYNYPRCTSCQCAFHYAT 365
EC + GS +V++ CT N R C Y + C+
Sbjct: 54 LWNWVPECLSCGSRCSSDQVETQACTREQN---RICTCRPGWYCALSKQEGCRLCAPLRK 110
Query: 366 GNCAEGTGKCECRPEYTKPDCNSCAFGYF--GYPNCEPCKCHMNGT 409
C G G E + C CA G F + + C+ H
Sbjct: 111 --CRPGFGVARPGTETSDVVCKPCAPGTFSNTTSSTDICRPHQICN 154
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting,
fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo
sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B*
2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B*
2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B*
1tye_B*
Length = 472
Score = 32.2 bits (72), Expect = 2.1
Identities = 14/66 (21%), Positives = 21/66 (31%), Gaps = 18/66 (27%)
Query: 656 VSCDDDGKCQCEKNFGGDRCERCKEGLYNFPICEACNCDSHGNIGVSCDDDGKCQCEKNF 715
+ C C C+ E P C + +G C G C+C +
Sbjct: 425 LIVQVTFDCDCA-------CQAQAE-----PNSHRC-NNGNGTF--EC---GVCRCGPGW 466
Query: 716 GGDRCE 721
G +CE
Sbjct: 467 LGSQCE 472
>1ext_A Tumor necrosis factor receptor; binding protein, cytokine,
signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1
g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R
Length = 162
Score = 30.4 bits (68), Expect = 2.8
Identities = 26/143 (18%), Positives = 43/143 (30%), Gaps = 13/143 (9%)
Query: 179 GGGVCQECRDNTEGINCHQRVAGYYRPYGKHLNETDVCQPCQCAFH-YATGNC-AEGTGK 236
G + +C + +C + +G + HL C C+ +C +
Sbjct: 26 GTYLYNDCPGPGQDTDCRECESGSFTASENHLRHCLSCSKCRKEMGQVEISSCTVDRDTV 85
Query: 237 CECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGD--- 293
C CR + + F C C +NGT+ C+ C C +
Sbjct: 86 CGCRKNQYRHYWSENLF------QCFNCSLCLNGTVHLSCQEKQNTVCTCHAGFFLRENE 139
Query: 294 --HCDTCAQGYYNFPTCSPCECN 314
C C + C P N
Sbjct: 140 CVSCSNCKKSLECTKLCLPQIEN 162
Score = 28.9 bits (64), Expect = 9.9
Identities = 17/115 (14%), Positives = 28/115 (24%), Gaps = 10/115 (8%)
Query: 332 CRNNFAGRTCDSCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAF 391
C C C G + C C + C
Sbjct: 33 CPGPGQDTDCRECESGSFTASENHLRHCLSCSKCRKEMGQVEISSCTV--DRDTVCGCRK 90
Query: 392 GYFGYPN------CEPCKCHMNGTLDFYCEPASGQQCPCKENY--AGDHCDTCAQ 438
+ + C C +NGT+ C+ C C + + C +C+
Sbjct: 91 NQYRHYWSENLFQCFNCSLCLNGTVHLSCQEKQNTVCTCHAGFFLRENECVSCSN 145
>1fcq_A Hyaluronoglucosaminidase; 7-stranded (beta/alpha) TIM barrel,
glycosidase family 56, allergen, hydrolase; 1.60A {Apis
mellifera} SCOP: c.1.8.9 PDB: 1fcu_A 1fcv_A* 2j88_A
Length = 350
Score = 31.4 bits (71), Expect = 3.0
Identities = 6/26 (23%), Positives = 11/26 (42%), Gaps = 6/26 (23%)
Query: 1237 GYYGFPDCHPCNCPFTAVCDSYTGEC 1262
GYY +P C + + + +C
Sbjct: 182 GYYAYPYC------YNLTPNQPSAQC 201
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 31.4 bits (70), Expect = 3.2
Identities = 11/42 (26%), Positives = 14/42 (33%), Gaps = 6/42 (14%)
Query: 555 CNCDIRGTEAGICDKTNGS-----CLCKEGYTGARCDQCKAG 591
CNC +A C G C C G G C + +
Sbjct: 457 CNCSDTQPQAPHCSDGQGHLQCGVCSCAPGRLGRLC-ESRGL 497
Score = 30.3 bits (67), Expect = 7.9
Identities = 14/67 (20%), Positives = 19/67 (28%), Gaps = 19/67 (28%)
Query: 655 GVSCDDDGKCQCEKNFGGDRCERCKEGLYNFPICEACNCDSHGNIGVSCDDDGKCQCEKN 714
+ + C C C + P C D G++ C G C C
Sbjct: 446 ELIVELHTLCDCN-------CSDTQ------PQAPHC-SDGQGHL--QC---GVCSCAPG 486
Query: 715 FGGDRCE 721
G CE
Sbjct: 487 RLGRLCE 493
>2oo4_A Notch 2, neurogenic locus notch homolog protein 2, HN2, notch2,
NOTC2; alpha-beta-sandwich, SEA domain, LNR, LIN12 notch
repeat, CY rich, HD domain; 2.00A {Homo sapiens}
Length = 234
Score = 30.9 bits (69), Expect = 3.3
Identities = 16/108 (14%), Positives = 27/108 (25%), Gaps = 10/108 (9%)
Query: 565 GICDKTNGSCLCKEGYTGARCDQCKAGYYGYPDCKLCGCSAVGSSSTACDVSGKCPCLVN 624
C + ++G C+ + G DC L + + S PC
Sbjct: 2 ATCLSQYCADKARDGVCDEACNSHACQWDGG-DCSLTMENPWA------NCSSPLPCWDY 54
Query: 625 FGGKTCSQCSPGFYQYPQCKACNCDSHGNIGVSCDD---DGKCQCEKN 669
+ C+ + + C D D C N
Sbjct: 55 INNQCDELCNTVECLFDNFECQGNSKTCKYDKYCADHFKDNHCNQGCN 102
>1xta_A Natrin 1; crisp, serine protease, ION channel blocking, cobra,
toxin; 1.58A {Naja atra} PDB: 2giz_A 1xx5_A 3mz8_A
1rc9_A 1wvr_A
Length = 221
Score = 30.6 bits (69), Expect = 3.8
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 337 AGRTCDSCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCECRPEYTKPDC 386
G C C N CT+ C + NC + C+ ++ K +C
Sbjct: 163 LGPPCGDCPSACDN-GLCTNP-CTIYNKLTNCDSLLKQSSCQDDWIKSNC 210
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 30.9 bits (69), Expect = 4.1
Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 6/54 (11%)
Query: 1695 CDVSEDGCHMNGTLNFYCEPT-SGQQCPCKENYAGDHCDTCAQACNCHGHADKC 1747
C + C ++ C +G C C NY G+ C + K
Sbjct: 8 CANNRHQCSVHAE----CRDYATGFCCRCVANYTGN-GRQCVAEGSPQRVNGKV 56
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger apoptosis,
apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A 3u3s_A 3u3t_A
3u3v_A 3qo4_A
Length = 313
Score = 30.7 bits (68), Expect = 4.3
Identities = 35/275 (12%), Positives = 56/275 (20%), Gaps = 32/275 (11%)
Query: 1246 PCNCPFTAVCDSYTGECICAARVIGKKCDQCEPNTFGYDPIIGCEECNCHP-------HG 1298
D TG+ + CD+C T+ + C
Sbjct: 7 SNLIGTYRHVDRATGQVLT--------CDKCPAGTYVSEHCTNTSLRVCSSCPVGTFTRH 58
Query: 1299 VNGTQQCDLFDGSCSCKENIVG------RTCDHCVEGHWSFPYCVPCECDLRGTTIDICN 1352
NG ++C C C G + C +C
Sbjct: 59 ENGIEKCHDCSQPCPWPMIEKLPCAALTDRECTCPPGM----FQSNATC----APHTVCP 110
Query: 1353 QGTAECYCKKNVYGAACDVCKEGTFDIQADNVDGCTRCFCFGKTTKCSSSNLYRSQLVYC 1412
G C C GTF +V C + C
Sbjct: 111 VGWGVRKKGTETEDVRCKQCARGTFSDVPSSVMKCKAYTDCLSQNLVVIKPGTKETDNVC 170
Query: 1413 KPCECSGNINRTDPGSCDSVTGECTGCLFNSAGDSCQYCAPGYYGNAVSLKNCVKCNCNP 1472
+ PG+ + S Y G + V+
Sbjct: 171 GTLPSFSSSTSPSPGTAIF---PRPEHMETHEVPSSTYVPKGMNSTESNSSASVRPKVLS 227
Query: 1473 EGVLKTFAGCGSLPAGELCECKPKVQGRICDECRP 1507
T S G+ K ++ + +
Sbjct: 228 SIQEGTVPDNTSSARGKEDVNKTLPNLQVVNHQQG 262
Score = 30.7 bits (68), Expect = 5.2
Identities = 28/185 (15%), Positives = 49/185 (26%), Gaps = 17/185 (9%)
Query: 276 CEPASGQQCPCKENYAGDHCDTCAQGYYNFPTCSPCECNAVGSLSDLCEVDSGNCTCRNN 335
C + C + C +C G + +C+ ++ C +
Sbjct: 29 CPAGTYVSEHCTNT-SLRVCSSCPVGTFTRHENGIEKCHDCSQPCPWPMIEKLPCAALTD 87
Query: 336 FAGRTCDSCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYF- 394
+C G + A C G G + E C CA G F
Sbjct: 88 ----RECTCPPGMF-------QSNATCAPHTVCPVGWGVRKKGTETEDVRCKQCARGTFS 136
Query: 395 -GYPNCEPCKCHMNGTLDFYCEPASGQQC---PCKENYAGDHCDTCAQGYYNFPTCSQIT 450
+ CK + + G + C + + + G FP +
Sbjct: 137 DVPSSVMKCKAYTDCLSQNLVVIKPGTKETDNVCGTLPSFSSSTSPSPGTAIFPRPEHME 196
Query: 451 LPDVP 455
+VP
Sbjct: 197 THEVP 201
Score = 29.9 bits (66), Expect = 8.1
Identities = 29/220 (13%), Positives = 48/220 (21%), Gaps = 25/220 (11%)
Query: 206 YGKHLNETDVCQPCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCK 265
+ +H N + C C + +C G + + C
Sbjct: 55 FTRHENGIEKCHDCSQPCPWPMIEKLPCAA--------LTDRECTCPPGM--FQSNATCA 104
Query: 266 CHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFPTCSPCECNAVGSLSDLCEV 325
H C G + E C CA+G ++ S +C A V
Sbjct: 105 PHTV------CPVGWGVRKKGTET-EDVRCKQCARGTFSDVPSSVMKCKAYTDCLSQNLV 157
Query: 326 DSGNCTCRNNFAGRTCDSCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCECRPEYTKPD 385
T + C + + Y
Sbjct: 158 VIKPGTKETD---NVCGTLPSFSSSTSPSPGTAI-----FPRPEHMETHEVPSSTYVPKG 209
Query: 386 CNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCK 425
NS + GT+ A G++ K
Sbjct: 210 MNSTESNSSASVRPKVLSSIQEGTVPDNTSSARGKEDVNK 249
>1fgj_A Hydroxylamine oxidoreductase; nitrification; HET: HEM HEC; 2.80A
{Nitrosomonas europaea} SCOP: a.138.1.3
Length = 546
Score = 30.9 bits (68), Expect = 4.7
Identities = 38/281 (13%), Positives = 63/281 (22%), Gaps = 49/281 (17%)
Query: 105 EDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSCEPCNCHGHADKCVYDPMV 164
+ + + G EV + ++ K C C H D D
Sbjct: 104 KIRNLKSDDPLYYKKGKLEEVENNLRSMGKLGEKETLKEVGCIDC----HVDVNKKDKAD 159
Query: 165 DEKRLSVDIQGNYEGGGVCQECRDNTEGINCHQRVAGYYRPYGKHLNETDVCQPCQCAFH 224
K + + C CH R + + P H
Sbjct: 160 HTKDIRMPTADT---------CGT------CHLREFAERESERDTMVWPNGQWPAGRPSH 204
Query: 225 YATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPC------------------KC 266
+ C + C+ C C
Sbjct: 205 ALDYTAN--IETTVWATMPQREVAEGCTMCHTNQNKCDNCHTRHEFSAAESRKPEACATC 262
Query: 267 HM---NGTLDFYCEPASG---QQCPCKENYAGDHCDTCAQGYYNFPTCSPCECNAVGSLS 320
H + + Y G + K N+ D ++G N PTC+ C G +
Sbjct: 263 HSGVDHNNWEAYTMSKHGKLAEMNRDKWNWEVRLKDAFSKGGQNAPTCAACHMEYEGEYT 322
Query: 321 D--LCEVDSGNCTCRNNFAGRTCDSCADGYYNYPR--CTSC 357
+ N A ++ + CT C
Sbjct: 323 HNITRKTRWANYPFVPGIAENITSDWSEARLDSWVLTCTQC 363
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 29.6 bits (67), Expect = 5.4
Identities = 9/63 (14%), Positives = 17/63 (26%), Gaps = 3/63 (4%)
Query: 284 CPCKENYAGDHCDTCAQGYYNFPTCSPCECNAVGSLSDLCEVDSGNCTCRNNFAGRTCDS 343
C + C+ G S C + + C + + C ++
Sbjct: 47 GTCWQTVIDGRCEININGAT---LKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGTQ 103
Query: 344 CAD 346
C D
Sbjct: 104 CED 106
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 30.4 bits (69), Expect = 5.7
Identities = 23/104 (22%), Positives = 30/104 (28%), Gaps = 25/104 (24%)
Query: 325 VDSGNCTCRNNFAGRTCDSCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCE--CRPEYT 382
+ CTC + G C+ +C E T C+ C P
Sbjct: 23 IWGYTCTCSPGYEGSNCE-----------LAKNEC--------HPERTDGCQHFCLPGQE 63
Query: 383 KPDCNSCAFGYFGYPNCEPCKCHMN---GTLDFYCEPASGQQCP 423
C SCA GY + + C H G L Q P
Sbjct: 64 SYTC-SCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPDLQDLP 106
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 30.6 bits (69), Expect = 5.8
Identities = 17/117 (14%), Positives = 29/117 (24%), Gaps = 4/117 (3%)
Query: 657 SCDDDGKCQCEKNF--GGDRCERCKEGLYNFPICEACNCDSHGNIGVSCDD--DGKCQCE 712
D + Q +NF D E + CD + ++ DG +
Sbjct: 50 HQDFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEETGDGLDEDS 109
Query: 713 KNFGGDRCERCKEGLYNFPICEECNCNPEGVLKTFAGCGSLPAGELCECKPKVQGRI 769
+ + P G+ F E + + GRI
Sbjct: 110 DRAIEGATATSEYQTFFNPATFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGRI 166
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 30.6 bits (69), Expect = 5.9
Identities = 15/124 (12%), Positives = 30/124 (24%), Gaps = 14/124 (11%)
Query: 236 KCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHC 295
K + ++ C F + + + LD E
Sbjct: 271 KSKALSGFSLQSCRHS-IPVFCHSSFYHDTDFLGEELDIVA-------AKSHEACQKLCT 322
Query: 296 DTCAQGYYNFPTCSPCECNAVGSLSDLCEVDSGNCTCRNNFAGRTCDSCADGYYNYPRCT 355
+ ++ + T + CN L +G+ T + GY
Sbjct: 323 NAVRCQFFTY-TPAQASCNEGKGKCYLKLSSNGSPTKILH-----GRGGISGYTLRLCKM 376
Query: 356 SCQC 359
+C
Sbjct: 377 DNEC 380
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A
{Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Length = 317
Score = 30.5 bits (68), Expect = 6.0
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 1121 KNIVATFKEPNHKSVWLDYILLIPANEFNENIINELPYSRAKEFIDVCGKNHFYLDNSTS 1180
N +A + PN K LDYI ++ + ++NE+ + K DV ++Y+ N S
Sbjct: 249 SNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKP-WDVYAAAYYYVYNDFS 307
>2ddb_A Pseudecin, channel blocker; crisp, snake venom, CNG channel, toxin;
1.90A {Pseudechis porphyriacus} PDB: 2epf_A 2dda_A
Length = 210
Score = 29.9 bits (67), Expect = 6.0
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 337 AGRTCDSCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCECRPEYTKPDCN-SC 389
+G C C N R + C ++ NC K +C+ E+ K C SC
Sbjct: 152 SGPPCADCPSACVN--RLCTNPCNYNNDFSNCKSLAKKSKCQTEWIKKKCPASC 203
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 30.2 bits (68), Expect = 7.2
Identities = 13/74 (17%), Positives = 21/74 (28%), Gaps = 9/74 (12%)
Query: 87 GGRC----RCNGHADVC---DILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAW--RQ 137
C RC+G + ++++ R N C +VCC E
Sbjct: 45 KKVCIVYHRCDGVTNTVTPEEVINTTGEGIFDIRENANECESYLDVCCGLPEGGVLPTPS 104
Query: 138 SQSNKPFSCEPCNC 151
+P C
Sbjct: 105 PTPPVVPVLKPSFC 118
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics,
PSI, protein structure initiative; 2.70A {Mycobacterium
tuberculosis}
Length = 204
Score = 29.5 bits (67), Expect = 8.0
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 1600 MVSFTKLSSQSNIVLPGLVVEQFLNLCPTEFD 1631
+V FT+ +S + P +V FL+ + FD
Sbjct: 18 IVGFTERASSTA---PADLVR-FLDRLYSAFD 45
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 30.2 bits (67), Expect = 8.6
Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 2/81 (2%)
Query: 281 GQQCPCKENYAGDHCDTCAQGYYNFPTCSPCECNAVGSLSDLCEVDSGNCT--CRNNFAG 338
++ + N T QG+ ++ ++ S + C +G+C+ C G
Sbjct: 226 SRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVG 285
Query: 339 RTCDSCADGYYNYPRCTSCQC 359
C Y +C
Sbjct: 286 GFVCGCPAHYSLNADNRTCSA 306
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein;
1.91A {Glycine max}
Length = 403
Score = 30.1 bits (67), Expect = 8.7
Identities = 15/76 (19%), Positives = 19/76 (25%), Gaps = 7/76 (9%)
Query: 320 SDLCEVDSGNCTCRNNFAGRTCDSCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCECRP 379
+ V+ + C S N +C SC A G K C
Sbjct: 44 GNHLWVNCEQQYSSKTYQAPFCHSTQCSRANTHQCLSCPAA-------SRPGCHKNTCGL 96
Query: 380 EYTKPDCNSCAFGYFG 395
T P G G
Sbjct: 97 MSTNPITQQTGLGELG 112
>2k7q_A Filamin-A; IG-like, ABP-280, actin binding protein, acetylation,
actin-binding, cytoplasm, cytoskeleton, disease mutation,
phosphoprotein; NMR {Homo sapiens}
Length = 191
Score = 29.3 bits (65), Expect = 9.3
Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 4/99 (4%)
Query: 1695 CDVSEDGCHMNGTLNFYCEPTSGQQCPCKENYAGDHCDTCAQACNCHGHADKCVYDPMVD 1754
V ++G H+ + S + +G + A+ +
Sbjct: 71 VHVKKNGQHVASSPIPVVISQSEIGDASRVRVSGQGLHEG----HTFEPAEFIIDTRDAG 126
Query: 1755 EKRLSVDIQGNYEGGGVCQECRDNTEGINCHQCVAGYYR 1793
LS+ I+G + ++ D T + G Y
Sbjct: 127 YGGLSLSIEGPSKVDINTEDLEDGTCRVTYCPTEPGNYI 165
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 27.8 bits (62), Expect = 9.9
Identities = 14/67 (20%), Positives = 20/67 (29%), Gaps = 7/67 (10%)
Query: 276 CEPASGQQCPCKENYAGDHCDTCAQGYYNFPTCSPCECNAVGSLSDLCEVDSGNCTCRNN 335
+ C C A H +CS C G+ C C
Sbjct: 26 LRSNRVEYCWCNSGRAQCHS-------VPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEG 78
Query: 336 FAGRTCD 342
FAG++C+
Sbjct: 79 FAGKSCE 85
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.472
Gapped
Lambda K H
0.267 0.0739 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 29,348,084
Number of extensions: 1915480
Number of successful extensions: 11623
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6401
Number of HSP's successfully gapped: 1507
Length of query: 1873
Length of database: 6,701,793
Length adjustment: 108
Effective length of query: 1765
Effective length of database: 3,686,325
Effective search space: 6506363625
Effective search space used: 6506363625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (28.8 bits)