RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12394
(1873 letters)
>d1kloa2 g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 56
Score = 54.9 bits (132), Expect = 4e-10
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 1415 CECSGNINRTDPGSCDSVTGECTGCLFNSAGDSCQYCAPGYYGNAVSLKNCVKC 1468
C+C+ NI+ G+C+ +TGEC C++N+AG C C G++GN ++ KC
Sbjct: 1 CQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKC 54
Score = 42.6 bits (100), Expect = 8e-06
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 264 CKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFPT----CSPCE 312
C +++ C +G+ C N AG +CD C +G++ P C+
Sbjct: 3 CNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCK 55
Score = 42.2 bits (99), Expect = 1e-05
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 1201 CQCDIDGSKSFECEQFGGQC-QCKPNVIGRRCEMCATGYYGFP----DCHPC 1247
C +ID + C + G+C +C N G C+ C G++G P C
Sbjct: 3 CNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKC 54
Score = 40.7 bits (95), Expect = 4e-05
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 402 CKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFPT 445
C +++ C +G+ C N AG +CD C +G++ P
Sbjct: 3 CNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPL 46
Score = 39.1 bits (91), Expect = 1e-04
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 555 CNCDIRGTEAGICDKTNGSCL-CKEGYTGARCDQCKAGYYGYP 596
CN +I G C++ G CL C G CD+CK G++G P
Sbjct: 3 CNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNP 45
Score = 37.2 bits (86), Expect = 7e-04
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 311 CECNAVGSLSDLCEVDSGNCT-CRNNFAGRTCDSCADGYYNYPR----CTSCQ 358
C N + C +G C C N AG CD C +G++ P C+
Sbjct: 3 CNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCK 55
Score = 36.4 bits (84), Expect = 0.001
Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 1292 CNCHPHG-VNGTQQCDLFDGSC-SCKENIVGRTCDHCVEGHWSFPY----CVPCE 1340
C C+ + N C+ G C C N G CD C EG + P C+
Sbjct: 1 CQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCK 55
Score = 35.3 bits (81), Expect = 0.003
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 736 CNCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDECRPLYWNLKASNPDGCEDC 791
C CN C L GE +C G CD C+ ++ P+ + C
Sbjct: 1 CQCNDNIDPNAVGNCNRL-TGECLKCIYNTAGFYCDRCKEGFFGN-PLAPNPADKC 54
Score = 35.3 bits (81), Expect = 0.003
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 1468 CNCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDECRPLYWNLKASNPDGCEDC 1523
C CN C L GE +C G CD C+ ++ P+ + C
Sbjct: 1 CQCNDNIDPNAVGNCNRL-TGECLKCIYNTAGFYCDRCKEGFFGN-PLAPNPADKC 54
Score = 34.9 bits (80), Expect = 0.005
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 90 CRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGY 130
C+CN + D + + +C +NT G C+ C G+
Sbjct: 1 CQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGF 41
Score = 34.1 bits (78), Expect = 0.009
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 791 CDCYTLGTIGGIKNCNPKSGQCV-CKATAMNRKCDACMDGTYALQDNNLFGCTEC 844
C C + NCN +G+C+ C CD C +G + +C
Sbjct: 1 CQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFG-NPLAPNPADKC 54
Score = 33.7 bits (77), Expect = 0.014
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 1523 CDCYTLGTIGGIKNCNPKSGQCV-CKATAMNRKCDACVDGTYALQDNNLFGCTEC 1576
C C + NCN +G+C+ C CD C +G + +C
Sbjct: 1 CQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFG-NPLAPNPADKC 54
Score = 33.0 bits (75), Expect = 0.025
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 1645 QLPDCQHNTLGDQCEQCQPGYHGNATQGT 1673
+ C +NT G C++C+ G+ GN
Sbjct: 21 ECLKCIYNTAGFYCDRCKEGFFGNPLAPN 49
Score = 31.8 bits (72), Expect = 0.067
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 13/56 (23%)
Query: 1738 CNCHGHADKCVYDPMVDEKRLSVDIQGNYEGGGVCQECRDNTEGINCHQCVAGYYR 1793
C C+ + D + G C +C NT G C +C G++
Sbjct: 1 CQCNDNIDPN-------------AVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFG 43
Score = 31.4 bits (71), Expect = 0.089
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 1702 CHMNGTLNFYCEPTSGQQCPCKENYAGDHCDTCA 1735
+++ C +G+ C N AG +CD C
Sbjct: 5 DNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCK 38
Score = 30.3 bits (68), Expect = 0.18
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 646 CNCDSHGNIGVSCDDD---GKC-QCEKNFGGDRCERCKEGLYNFP 686
C C+ + + + + G+C +C N G C+RCKEG + P
Sbjct: 1 CQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNP 45
Score = 30.3 bits (68), Expect = 0.18
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 691 CNCDSHGNIGVSCDDD---GKC-QCEKNFGGDRCERCKEGLYNFP 731
C C+ + + + + G+C +C N G C+RCKEG + P
Sbjct: 1 CQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNP 45
Score = 29.9 bits (67), Expect = 0.33
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 1339 CECDLRGTTIDICNQGTAECY-CKKNVYGAACDVCKEGTFDIQADNVDGCTRC 1390
C ++ + CN+ T EC C N G CD CKEG F + +C
Sbjct: 3 CNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFG-NPLAPNPADKC 54
Score = 29.5 bits (66), Expect = 0.37
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 219 CQCAFH---YATGNCAEGTGKC-ECRPEYTKPDCNSCAFGYFGYP----NCEPCK 265
CQC + A GNC TG+C +C C+ C G+FG P + CK
Sbjct: 1 CQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCK 55
Score = 29.5 bits (66), Expect = 0.37
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 357 CQCAFH---YATGNCAEGTGKC-ECRPEYTKPDCNSCAFGYFGYP----NCEPCK 403
CQC + A GNC TG+C +C C+ C G+FG P + CK
Sbjct: 1 CQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCK 55
Score = 29.5 bits (66), Expect = 0.41
Identities = 12/72 (16%), Positives = 22/72 (30%), Gaps = 17/72 (23%)
Query: 149 CNCHGHADKCVYDPMVDEKRLSVDIQGNYEGGGVCQECRDNTEGINCHQRVAGYYRPYGK 208
C C+ + D + G C +C NT G C + G++
Sbjct: 1 CQCNDNIDPN-------------AVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFG---- 43
Query: 209 HLNETDVCQPCQ 220
+ + C+
Sbjct: 44 NPLAPNPADKCK 55
Score = 29.5 bits (66), Expect = 0.47
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 1248 NCPFTAVCDSYTGECI-CAARVIGKKCDQCEPNTFGYDPI-IGCEEC 1292
+ C+ TGEC+ C G CD+C+ FG ++C
Sbjct: 8 DPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKC 54
Score = 28.7 bits (64), Expect = 0.80
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 601 CGCSAVGSSSTACD-VSGKC-PCLVNFGGKTCSQCSPGFYQYPQ----CKAC 646
C + ++ C+ ++G+C C+ N G C +C GF+ P C
Sbjct: 3 CNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKC 54
>d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 51
Score = 51.4 bits (123), Expect = 6e-09
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 1201 CQCDIDGSKSF--ECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPC 1247
C C+ G+ C GQCQC P+V GR C C GYY C
Sbjct: 1 CACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQSGQGC 49
Score = 49.1 bits (117), Expect = 4e-08
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 555 CNCDIRGT--EAGICDKTNGSCLCKEGYTGARCDQCKAGYYGYPDCKLC 601
C C+ GT + C+ G C C +G C C GYY + C
Sbjct: 1 CACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQSGQGC 49
Score = 48.3 bits (115), Expect = 7e-08
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 311 CECNAVGSLSD--LCEVDSGNCTCRNNFAGRTCDSCADGYYNYPRCTSCQ 358
C CN G++ C +G C C + +GR C +C GYYN C+
Sbjct: 1 CACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQSGQGCE 50
Score = 48.0 bits (114), Expect = 8e-08
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 1292 CNCHPHG-VNGTQQCDLFDGSCSCKENIVGRTCDHCVEGHWSFPYCVPCE 1340
C C+P+G V C+ G C C ++ GR C C G+++ CE
Sbjct: 1 CACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQSGQGCE 50
Score = 47.6 bits (113), Expect = 1e-07
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 264 CKCHMNGTLDF--YCEPASGQQCPCKENYAGDHCDTCAQGYYNFPTCSPCE 312
C C+ GT+ C P +GQ C C + +G C TC GYYN + CE
Sbjct: 1 CACNPYGTVQQQSSCNPVTGQ-CQCLPHVSGRDCGTCDPGYYNLQSGQGCE 50
Score = 44.5 bits (105), Expect = 2e-06
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 646 CNCDSHGNIGVSCDDD---GKCQCEKNFGGDRCERCKEGLYNFPICEAC 691
C C+ +G + + G+CQC + G C C G YN + C
Sbjct: 1 CACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQSGQGC 49
Score = 44.5 bits (105), Expect = 2e-06
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 691 CNCDSHGNIGVSCDDD---GKCQCEKNFGGDRCERCKEGLYNFPICEEC 736
C C+ +G + + G+CQC + G C C G YN + C
Sbjct: 1 CACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQSGQGC 49
Score = 43.3 bits (102), Expect = 4e-06
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 402 CKCHMNGTLDF--YCEPASGQQCPCKENYAGDHCDTCAQGYYNFPTC 446
C C+ GT+ C P +GQ C C + +G C TC GYYN +
Sbjct: 1 CACNPYGTVQQQSSCNPVTGQ-CQCLPHVSGRDCGTCDPGYYNLQSG 46
Score = 43.0 bits (101), Expect = 6e-06
Identities = 18/47 (38%), Positives = 21/47 (44%)
Query: 791 CDCYTLGTIGGIKNCNPKSGQCVCKATAMNRKCDACMDGTYALQDNN 837
C C GT+ +CNP +GQC C R C C G Y LQ
Sbjct: 1 CACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQSGQ 47
Score = 41.8 bits (98), Expect = 2e-05
Identities = 18/47 (38%), Positives = 21/47 (44%)
Query: 1523 CDCYTLGTIGGIKNCNPKSGQCVCKATAMNRKCDACVDGTYALQDNN 1569
C C GT+ +CNP +GQC C R C C G Y LQ
Sbjct: 1 CACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQSGQ 47
Score = 41.4 bits (97), Expect = 2e-05
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 601 CGCSAVGSSSTACD---VSGKCPCLVNFGGKTCSQCSPGFYQYPQCKAC 646
C C+ G+ V+G+C CL + G+ C C PG+Y + C
Sbjct: 1 CACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQSGQGC 49
Score = 40.6 bits (95), Expect = 3e-05
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 1243 DCHPC-NCPFTAVCDSYTGECICAARVIGKKCDQCEPNTFGYDPIIGCE 1290
C+P + C+ TG+C C V G+ C C+P + GCE
Sbjct: 2 ACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQSGQGCE 50
Score = 39.9 bits (93), Expect = 7e-05
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 227 TGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCK 265
+C TG+C+C P + DC +C GY+ + + C+
Sbjct: 12 QSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQSGQGCE 50
Score = 39.9 bits (93), Expect = 7e-05
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 365 TGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCK 403
+C TG+C+C P + DC +C GY+ + + C+
Sbjct: 12 QSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQSGQGCE 50
Score = 37.6 bits (87), Expect = 4e-04
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 736 CNCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDECRPLYWNLKASNPDGCE 789
C CNP G ++ + C P C+C P V GR C C P Y+NL + GCE
Sbjct: 1 CACNPYGTVQQQSSCN--PVTGQCQCLPHVSGRDCGTCDPGYYNL--QSGQGCE 50
Score = 37.6 bits (87), Expect = 4e-04
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 1468 CNCNPEGVLKTFAGCGSLPAGELCECKPKVQGRICDECRPLYWNLKASNPDGCE 1521
C CNP G ++ + C P C+C P V GR C C P Y+NL + GCE
Sbjct: 1 CACNPYGTVQQQSSCN--PVTGQCQCLPHVSGRDCGTCDPGYYNL--QSGQGCE 50
Score = 36.4 bits (84), Expect = 0.001
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 1339 CECDLRGT--TIDICNQGTAECYCKKNVYGAACDVCKEGTFDIQADNVDGCTR 1389
C C+ GT CN T +C C +V G C C G +++Q + GC R
Sbjct: 1 CACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQ--SGQGCER 51
Score = 36.0 bits (83), Expect = 0.002
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 1415 CECSGNINRTDPGSCDSVTGECTGCLFNSAGDSCQYCAPGYYG 1457
C C+ SC+ VTG+C CL + +G C C PGYY
Sbjct: 1 CACNPYGTVQQQSSCNPVTGQCQ-CLPHVSGRDCGTCDPGYYN 42
Score = 31.0 bits (70), Expect = 0.093
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 1702 CHMNGTLNF--YCEPTSGQQCPCKENYAGDHCDTCA 1735
C+ GT+ C P +GQ C C + +G C TC
Sbjct: 3 CNPYGTVQQQSSCNPVTGQ-CQCLPHVSGRDCGTCD 37
Score = 26.8 bits (59), Expect = 3.8
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 1649 CQHNTLGDQCEQCQPGYHGNAT 1670
C + G C C PGY+ +
Sbjct: 24 CLPHVSGRDCGTCDPGYYNLQS 45
Score = 26.4 bits (58), Expect = 4.9
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 90 CRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGY 130
C CN + V +P C+C + G +C C PGY
Sbjct: 1 CACNPYGTVQQQSSC-NPVTGQCQCLPHVSGRDCGTCDPGY 40
>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 55
Score = 34.5 bits (79), Expect = 0.006
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 4/59 (6%)
Query: 90 CRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSCEP 148
C C G + + P+ C T G CE+C GY + + C P
Sbjct: 1 CPCPGGSSCA--IVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRL--CRP 55
Score = 34.5 bits (79), Expect = 0.006
Identities = 11/52 (21%), Positives = 15/52 (28%)
Query: 264 CKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFPTCSPCECNA 315
C C + + C AG C+ C GY+ P S
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRL 52
Score = 32.6 bits (74), Expect = 0.029
Identities = 14/72 (19%), Positives = 19/72 (26%), Gaps = 18/72 (25%)
Query: 149 CNCHGHADKCVYDPMVDEKRLSVDIQGNYEGGGVCQECRDNTEGINCHQRVAGYYRPYGK 208
C C G + + VC C T G C GY +G
Sbjct: 1 CPCPGGSSCAIVPK---------------TKEVVCTHCPTGTAGKRCELCDDGY---FGD 42
Query: 209 HLNETDVCQPCQ 220
L + C+
Sbjct: 43 PLGSNGPVRLCR 54
Score = 32.6 bits (74), Expect = 0.030
Identities = 13/69 (18%), Positives = 18/69 (26%), Gaps = 15/69 (21%)
Query: 1738 CNCHGHADKCVYDPMVDEKRLSVDIQGNYEGGGVCQECRDNTEGINCHQCVAGYYRPYGK 1797
C C G + + VC C T G C C GY+
Sbjct: 1 CPCPGGSSCAIVPK---------------TKEVVCTHCPTGTAGKRCELCDDGYFGDPLG 45
Query: 1798 HLNETDVCQ 1806
+C+
Sbjct: 46 SNGPVRLCR 54
Score = 32.6 bits (74), Expect = 0.032
Identities = 10/44 (22%), Positives = 14/44 (31%)
Query: 402 CKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFPT 445
C C + + C AG C+ C GY+ P
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPL 44
Score = 32.2 bits (73), Expect = 0.044
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 311 CECNAVGSLSDLCEVDSGNCT-CRNNFAGRTCDSCADGYYNYPRCTSCQC 359
C C S + + + CT C AG+ C+ C DGY+ P ++
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPV 50
Score = 31.8 bits (72), Expect = 0.054
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 555 CNCDIRGTEAGICDKTNGSCL-CKEGYTGARCDQCKAGYYGYP 596
C C + A + C C G G RC+ C GY+G P
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDP 43
Score = 31.8 bits (72), Expect = 0.056
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 6/53 (11%)
Query: 1201 CQCDIDGSKSFECEQFGGQC-QCKPNVIGRRCEMCATGYYGFP-----DCHPC 1247
C C S + + C C G+RCE+C GY+G P C
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLC 53
Score = 31.0 bits (70), Expect = 0.12
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 1648 DCQHNTLGDQCEQCQPGYHGNATQGTMADCLIC 1680
C T G +CE C GY G+ G+ +C
Sbjct: 22 HCPTGTAGKRCELCDDGYFGDPL-GSNGPVRLC 53
Score = 30.6 bits (69), Expect = 0.18
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 1415 CECSGNINRTDPGSCDSVTGECTGCLFNSAGDSCQYCAPGYYGNAV 1460
C C G + + CT C +AG C+ C GY+G+ +
Sbjct: 1 CPCPGGSSCAI--VPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPL 44
Score = 28.3 bits (63), Expect = 0.93
Identities = 10/52 (19%), Positives = 15/52 (28%), Gaps = 2/52 (3%)
Query: 691 CNCDSHGNIGVSCDDDGK--CQCEKNFGGDRCERCKEGLYNFPICEECNCNP 740
C C + + C G RCE C +G + P+
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRL 52
Score = 27.2 bits (60), Expect = 3.0
Identities = 10/50 (20%), Positives = 15/50 (30%), Gaps = 2/50 (4%)
Query: 646 CNCDSHGNIGVSCDDDGK--CQCEKNFGGDRCERCKEGLYNFPICEACNC 693
C C + + C G RCE C +G + P+
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPV 50
Score = 26.8 bits (59), Expect = 4.1
Identities = 11/52 (21%), Positives = 14/52 (26%), Gaps = 4/52 (7%)
Query: 219 CQCAFHYATGNCAEGTGK---CECRPEYTKPDCNSCAFGYFGYPNCEPCKCH 267
C C ++ T + C C C GYFG P
Sbjct: 1 CPCPGG-SSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVR 51
Score = 26.8 bits (59), Expect = 4.1
Identities = 11/52 (21%), Positives = 14/52 (26%), Gaps = 4/52 (7%)
Query: 357 CQCAFHYATGNCAEGTGK---CECRPEYTKPDCNSCAFGYFGYPNCEPCKCH 405
C C ++ T + C C C GYFG P
Sbjct: 1 CPCPGG-SSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVR 51
>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit,
N-terminal domain {Pseudomonas fragi [TaxId: 296]}
Length = 310
Score = 33.5 bits (75), Expect = 0.22
Identities = 17/153 (11%), Positives = 42/153 (27%), Gaps = 5/153 (3%)
Query: 17 DNGITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRR 76
++GI D + N FN L E +A + + ++ G ++S
Sbjct: 14 ESGIVELKFDLKGESVNKFNRLTLNELRQAVD---AIKADASVKGVIVSSGKDVFIVGAD 70
Query: 77 YFYSIKDISIGGRCRCNGHADVCDILD--PEDPYHRICRCQHNTCGHNCEVCCPGYEQKA 134
+++ + G+ + I + + G E+C +
Sbjct: 71 ITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVM 130
Query: 135 WRQSQSNKPFSCEPCNCHGHADKCVYDPMVDEK 167
++ P + + +
Sbjct: 131 ADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDN 163
>d1ez0a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Vibrio harveyi [TaxId: 669]}
Length = 504
Score = 33.5 bits (75), Expect = 0.28
Identities = 24/314 (7%), Positives = 55/314 (17%), Gaps = 5/314 (1%)
Query: 163 MVDEKRLSVDIQGNYEGGGVCQECRDNTEGINCHQRVAGYYRPYGKHLNETDVCQPCQCA 222
++ RL D+ + + + T + G P +
Sbjct: 90 TANQLRLFADVVNSGSYHQAILDTPNPTRAPLPKPDIRRQQIALGPVAVFGASNFPLAFS 149
Query: 223 FHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQ 282
A G +T S + + +
Sbjct: 150 AAGGDTASALAAGCPVIVKGHTAHPGTSQIVAECIEQALKQEQLPQAIFTLLQGNQRALG 209
Query: 283 QCPCKENYAGDHCDTCAQGYYNFPTCSPCECNAVGSLSDLCEVDSGNCTCRNNFAGRTCD 342
Q T + G E + + +
Sbjct: 210 QALVSHPEIKAVGFTGSVGGGRALFNLAHERPEPIPFYGELGAINPTFIFPSAMRAKADL 269
Query: 343 SCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPC 402
+ C A T + + E + + P
Sbjct: 270 ADQFVASMTMGCGQF---CTKPGVVFALNTPETQAFIETAQSLIRQQSPSTLLTPGIRDS 326
Query: 403 KCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFPTCSQITLPDVPVIRVLMA 462
+ A T ++ + P + P +++
Sbjct: 327 YQSQVVSRGSDDGIDVTFSQAESPCVASALFVTSSENWRKHPAWEEEIF--GPQSLIVVC 384
Query: 463 TITTHAVLLVNVTR 476
+ L +
Sbjct: 385 ENVADMLSLSEMLA 398
>d2cara1 c.51.4.1 (A:1-194) Inosine triphosphate pyrophosphatase,
ITPase {Human (Homo sapiens) [TaxId: 9606]}
Length = 194
Score = 31.0 bits (69), Expect = 0.80
Identities = 19/150 (12%), Positives = 41/150 (27%), Gaps = 11/150 (7%)
Query: 1147 EFNENIINELPYSRAKEFIDVCGKNHFYLDNSTSEFCKKATFSMTISFLHEALPCQCDID 1206
E + + ++ P + + ID+ + S + + + + C +
Sbjct: 22 EVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCQEAVRQVQGPVLVEDTCLCFNALG 81
Query: 1207 GSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNCPFTAVCDSYTGE--CIC 1264
G + F + + E GF D A+ + +
Sbjct: 82 GLPGPYIKWFLEKL---------KPEGLHQLLAGFEDKSAYALCTFALSTGDPSQPVRLF 132
Query: 1265 AARVIGKKCDQCEPNTFGYDPIIGCEECNC 1294
R G+ FG+DP +
Sbjct: 133 RGRTSGRIVAPRGCQDFGWDPCFQPDGYEQ 162
>d2nlza1 d.153.1.6 (A:3-539) Cephalosporin acylase {Bacillus
halodurans [TaxId: 86665]}
Length = 537
Score = 31.8 bits (71), Expect = 0.87
Identities = 27/243 (11%), Positives = 49/243 (20%), Gaps = 14/243 (5%)
Query: 1292 CNCHPHGVNGTQQCDLFDGSCSCKENIVGRTCDHCVEGHWSFPYCVPCECDLRGTTIDIC 1351
+ + D + + C W P D RG +
Sbjct: 210 AESNGESFYRGELADQIHAFFDKHGGYLTKEDLACYRPEW----VEPISIDYRGYRVWEI 265
Query: 1352 NQ-GTAECYCKKNVYGAACDVCKEGTFDIQADNVDGCTRCFCFGKTTKCSSSNLYRSQLV 1410
G + + + T D ++ F G S++ S
Sbjct: 266 PPNGQGLVALEALNIVKGFEFYHKDTVDTYHKQIEAMKLAFVDGMKYVTEPSDMSVSVEQ 325
Query: 1411 YCKPCECSGNINRTDPGSCDSVTGECTGCLFNSAGDSCQYCAPGYYGNAVSLKNCVKCNC 1470
+ + G G + GN V + ++ N
Sbjct: 326 LLSDEYATERRKEIGEQALTPEPGT------PPRGGTVYLATADGDGNMV---SFIQSNY 376
Query: 1471 NPEGVLKTFAGCGSLPAGELCECKPKVQGRICDECRPLYWNLKASNPDGCEDCDCYTLGT 1530
G G G + ++ D G
Sbjct: 377 MGFGSGVVVPGTGIAMQNRGHNFSLDPNHDNALKPGKRTYHTIIPGFLTKNDQPIGPFGV 436
Query: 1531 IGG 1533
+GG
Sbjct: 437 MGG 439
>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia
malayi) [TaxId: 6279]}
Length = 174
Score = 30.5 bits (68), Expect = 1.3
Identities = 19/109 (17%), Positives = 30/109 (27%), Gaps = 3/109 (2%)
Query: 1685 PITSNNFASGCDVSEDGCHMNGTLNFYCEPTSGQQCPCKENYAGD---HCDTCAQACNCH 1741
P T NNF C ++G Y T + GD T ++
Sbjct: 30 PRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGG 89
Query: 1742 GHADKCVYDPMVDEKRLSVDIQGNYEGGGVCQECRDNTEGINCHQCVAG 1790
D+ + +S+ +G G +N V G
Sbjct: 90 MFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFG 138
>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1
{House-dust mite (Dermatophagoides pteronyssinus)
[TaxId: 6956]}
Length = 302
Score = 30.8 bits (68), Expect = 1.4
Identities = 17/143 (11%), Positives = 32/143 (22%), Gaps = 1/143 (0%)
Query: 208 KHLNETDVCQPCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFGYFGYPNCEPCKCH 267
+ + A + E DC S +
Sbjct: 103 RMQGGCGSAWAFSGVAATESAYLAYRDQSLDL-AEQELVDCASQHGCHGDTIPRGIEYIQ 161
Query: 268 MNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFPTCSPCECNAVGSLSDLCEVDS 327
NG + ++ C+ A + Y E A + +
Sbjct: 162 HNGVVQESYYRYVAREQSCRRPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGI 221
Query: 328 GNCTCRNNFAGRTCDSCADGYYN 350
+ ++ GRT +GY
Sbjct: 222 KDLDAFRHYDGRTIIQRDNGYQP 244
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans)
[TaxId: 5476]}
Length = 342
Score = 30.7 bits (68), Expect = 1.5
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 320 SDLCEVDSGNCTCRNNFAGRTCDSCAD-GYYNYPRCTSCQ---CAFH--YATGNCAEGT 372
S V N C+ ++ +T D C G Y+ ++ Q F Y G+ ++GT
Sbjct: 35 SSDLWVPDVNVDCQVTYSDQTADFCKQKGTYDPSGSSASQDLNTPFKIGYGDGSSSQGT 93
>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 258
Score = 30.2 bits (66), Expect = 1.9
Identities = 17/206 (8%), Positives = 45/206 (21%), Gaps = 5/206 (2%)
Query: 17 DNGITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRR 76
++G T +L R + KN N+ ++E A N + L +
Sbjct: 9 EDGFTQIVLSTRSTEKNALNTEVIKEMVNALN---SAAADDSKLVLFSAAGSVFCCGLDF 65
Query: 77 YFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWR 136
++ + + + ++ + + G +
Sbjct: 66 GYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVS--VNGPAIGLGASILPLCDLV 123
Query: 137 QSQSNKPFSCEPCNCHGHADKCVYDPMVDEKRLSVDIQGNYEGGGVCQECRDNTEGINCH 196
+ F D C + + G + ++
Sbjct: 124 WANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQV 183
Query: 197 QRVAGYYRPYGKHLNETDVCQPCQCA 222
+ + + E
Sbjct: 184 FLTGTFTQEVMIQIKELASYNAIVLE 209
>d1jfja_ a.39.1.5 (A:) EHCABP {Entamoeba (Entamoeba histolytica)
[TaxId: 5759]}
Length = 134
Score = 28.5 bits (62), Expect = 4.0
Identities = 12/115 (10%), Positives = 27/115 (23%), Gaps = 1/115 (0%)
Query: 1195 LHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNCPFTAV 1254
+ EAL + D++G + E+ K I + D +
Sbjct: 1 MAEALFKEIDVNGDGAVSYEEV-KAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFA 59
Query: 1255 CDSYTGECICAARVIGKKCDQCEPNTFGYDPIIGCEECNCHPHGVNGTQQCDLFD 1309
+ + + + D + EE + +
Sbjct: 60 KFYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHGIEKVAEQVM 114
>d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA
polymerases {Archaeon Thermococcus gorgonarius [TaxId:
71997]}
Length = 347
Score = 29.4 bits (65), Expect = 4.5
Identities = 15/137 (10%), Positives = 30/137 (21%), Gaps = 8/137 (5%)
Query: 1203 CDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNCPFTAVCDSYTGEC 1262
DI +K + ++ + + ++ + G + D
Sbjct: 112 YDIPFAKRYLIDKGLIPMEGDEELKMLAFDIETLYHEGEEFAEGPILMIS-YADEEGARV 170
Query: 1263 ICAARVIGKKCDQCEPNTFGYDPIIGCEECNCHPHGVNGTQQCDLFDGSCSCKENIVGRT 1322
I + D + V T D FD + R+
Sbjct: 171 ITWKNIDLPYVDVVSTEKEMIKRF--LKVVKEKDPDVLITYNGDNFDF-----AYLKKRS 223
Query: 1323 CDHCVEGHWSFPYCVPC 1339
V+ P
Sbjct: 224 EKLGVKFILGREGSEPK 240
>d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia
coli [TaxId: 562]}
Length = 235
Score = 28.6 bits (63), Expect = 6.2
Identities = 11/61 (18%), Positives = 15/61 (24%)
Query: 329 NCTCRNNFAGRTCDSCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCECRPEYTKPDCNS 388
N + AG T G RC+ + E C P +P
Sbjct: 91 NIDNLHERAGNTNVIHMHGELLKVRCSQSGQVLDWTGDVTPEDKCHCCQFPAPLRPHVVW 150
Query: 389 C 389
Sbjct: 151 F 151
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 386
Score = 28.8 bits (63), Expect = 6.9
Identities = 26/176 (14%), Positives = 39/176 (22%), Gaps = 8/176 (4%)
Query: 273 DFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFPTCSPCECNAVGSLSDLCEVDSGNCTC 332
A G DT +N S A GS++DL +
Sbjct: 89 KLAGLLAQRMFVMLPCGGVGVDTDT----IWNELHSSNAARWAAGSVTDLAFKVASRELK 144
Query: 333 RNNFAGRTCDSCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCECRPEYTKPDCNSCAFG 392
R AD C A K ++ N
Sbjct: 145 NGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQQSKASKILI-VDWDVHHGNGT--Q 201
Query: 393 YFGYPNCEPCKCHMNGTLDFYCEPASGQQCPC-KENYAGDHCDTCAQGYYNFPTCS 447
Y + ++ D P SG + G + + G + P
Sbjct: 202 QTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVGAGSGEGFNVNVAWAGGLDPPMGD 257
>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma
cruzi [TaxId: 5693]}
Length = 412
Score = 28.7 bits (62), Expect = 7.8
Identities = 15/257 (5%), Positives = 38/257 (14%), Gaps = 6/257 (2%)
Query: 74 TRRYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQK 133
+ I + + + + E +
Sbjct: 107 CSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDE 166
Query: 134 AWRQSQSNKPFSCEPCNCHGHADKCVYDPMVDEKRLSVDIQGNYEGGGVCQECRDNTEGI 193
R + + D RL+ +++ + +
Sbjct: 167 IRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDP 226
Query: 194 NCHQRVAGYYRPYGKHLNETDV-----CQPCQCAFHYATGNCAEGTGKCECRPEYTKPDC 248
N + + + + G E C
Sbjct: 227 NATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVC 286
Query: 249 NSCAFGYFGYPNCEPCKCHMNGTLDFYCEPASGQQC-PCKENYAGDHCDTCAQGYYNFPT 307
C + S G Y
Sbjct: 287 GPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSR 346
Query: 308 CSPCECNAVGSLSDLCE 324
+ + + + E
Sbjct: 347 IDLEKYRDIKTDVEFFE 363
>d2cvca1 a.138.1.1 (A:40-544) 16-heme cytochrome c HmcA
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 505
Score = 28.6 bits (61), Expect = 8.1
Identities = 32/324 (9%), Positives = 54/324 (16%), Gaps = 8/324 (2%)
Query: 87 GGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSC 146
+ C V D + + + C V A + +
Sbjct: 134 DPQKNCGACHHVYDEASKKLVWGKNKEDSCRACHGEKPVDKRPALDTAAHTACISCHMDV 193
Query: 147 EPCNCHGHADKCVYDPMV---DEKRLSVDIQGNYEGGGVCQECRDNTEGINCHQRVAGYY 203
C + ++ ++ G +
Sbjct: 194 AKTKAETGPVNCAGCHAPEAQAKFKVVREVPRLDRGQPDAALILPVPGKDAPREMKGTMK 253
Query: 204 RPYGKHLNETDVCQPCQCAFHYATGNCA-----EGTGKCECRPEYTKPDCNSCAFGYFGY 258
H C+ H C GT + G
Sbjct: 254 PVAFDHKAHEAKANDCRTCHHVRIDTCTACHTVNGTADSKFVQLEKAMHQPDSMRSCVGC 313
Query: 259 PNCEPCKCHMNGTLDFYCEPASGQQCPCKENYAGDHCDTCAQGYYNFPTCSPCECNAVGS 318
N + G F S QC A + + S
Sbjct: 314 HNTRVQQPTCAGCHGFIKPTKSDAQCGVCHVAAPGFDAKQVEAGALLNLKAEQRSQVAAS 373
Query: 319 LSDLCEVDSGNCTCRNNFAGRTCDSCADGYYNYPRCTSCQCAFHYATGNCAEGTGKCECR 378
+ G + S A Y A +
Sbjct: 374 MLSARPQPKGTFDLNDIPEKVVIGSIAKEYQPSEFPHRKIVKTLIAGIGEDKLAATFHIE 433
Query: 379 PEYTKPDCNSCAFGYFGYPNCEPC 402
C+ + P C C
Sbjct: 434 KGTLCQGCHHNSPASLTPPKCASC 457
>d1fcqa_ c.1.8.9 (A:) Bee venom hyaluronidase {Honeybee (Apis
mellifera) [TaxId: 7460]}
Length = 321
Score = 28.3 bits (63), Expect = 8.2
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 6/26 (23%)
Query: 1237 GYYGFPDCHPCNCPFTAVCDSYTGEC 1262
GYY +P C+ N + + +C
Sbjct: 173 GYYAYPYCY--NLTP----NQPSAQC 192
>d1svba2 f.10.1.1 (A:1-302) Envelope glycoprotein {Tick-borne
encephalitis virus [TaxId: 11084]}
Length = 302
Score = 28.2 bits (63), Expect = 9.2
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 63 LMSMADQDPTTTRRYFY--SIKDISIGGRCRCNGHA 96
L ++ ++P TR Y + D + RC G A
Sbjct: 45 LDAIYQENPAKTREYCLHAKLSDTKVAARCPTMGPA 80
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.472
Gapped
Lambda K H
0.267 0.0376 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 7,649,705
Number of extensions: 429869
Number of successful extensions: 3197
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2357
Number of HSP's successfully gapped: 547
Length of query: 1873
Length of database: 2,407,596
Length adjustment: 99
Effective length of query: 1774
Effective length of database: 1,048,326
Effective search space: 1859730324
Effective search space used: 1859730324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.8 bits)