BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12396
(348 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DYK|A Chain A, Laminin Alpha 2 Chain Lg4-5 Domain Pair
Length = 394
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 103/313 (32%), Positives = 168/313 (53%), Gaps = 14/313 (4%)
Query: 8 GTSKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHY 67
G S++S I + KN+ ++++T +E G++FY+A + H D+ + +++G ++
Sbjct: 39 GLSRNSHIAIAFDDTKVKNRLTIELEVRTEAES-GLLFYMARINHADFATVQLRNGFPYF 97
Query: 68 SFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFG 127
S++ GSG + K I DG+WH ++ R + G L +D ++ S + L++ G
Sbjct: 98 SYDLGSGDTSTMIPTK-INDGQWHKIKIVRVKQEGILYVD-DASSQTISPKKADILDVVG 155
Query: 128 PFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNKLVQ-DKHTSS-GVIPCSDKTESG 185
Y+GG+P+N +T G + + GC+RNL V D+ TSS V C ESG
Sbjct: 156 ILYVGGLPINYTTRRIGPVTY--SLDGCVRNLHMEQAPVDLDQPTSSFHVGTCFANAESG 213
Query: 186 VFFYNSGGYVKGVEQFRVGREMELKMDVKPRNISGLLLSVHSKK-DYFILQMIDGSVKAT 244
+F + G+ K V F+VG ++ ++ + + +G+LL V S+K D ++MID +
Sbjct: 214 TYF-DGTGFAKAVGGFKVGLDLLVEFEFRTTRPTGVLLGVSSQKMDGMGIEMIDEKLMFH 272
Query: 245 VDNGKGPISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSET- 303
VDNG G +AIY P C+GQWH + A K KN + + VD D P S+ T
Sbjct: 273 VDNGAGRFTAIYDAEIPGHMCNGQWHKVTAKKIKNRLELVVDGNQVDAQS---PNSASTS 329
Query: 304 -DTNNAVFIGGHP 315
DTN+ VF+GG P
Sbjct: 330 ADTNDPVFVGGFP 342
>pdb|1OKQ|A Chain A, Laminin Alpha 2 Chain Lg4-5 Domain Pair, Ca1 Site Mutant
Length = 394
Score = 152 bits (383), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 102/313 (32%), Positives = 166/313 (53%), Gaps = 14/313 (4%)
Query: 8 GTSKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHY 67
G S++S I + KN+ ++++T +E G++FY+A + H + + +++G ++
Sbjct: 39 GLSRNSHIAIAFDDTKVKNRLTIELEVRTEAES-GLLFYMARINHAAFATVQLRNGFPYF 97
Query: 68 SFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFG 127
S++ GSG + K I DG+WH ++ R + G L +D ++ S + L + G
Sbjct: 98 SYDLGSGDTSTMIPTK-INDGQWHKIKIVRVKQEGILYVD-DASSQTISPKKADILAVVG 155
Query: 128 PFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNKLVQ-DKHTSS-GVIPCSDKTESG 185
Y+GG+P+N +T G + + GC+RNL V D+ TSS V C ESG
Sbjct: 156 ILYVGGLPINYTTRRIGPVTY--SLDGCVRNLHMEQAPVDLDQPTSSFHVGTCFANAESG 213
Query: 186 VFFYNSGGYVKGVEQFRVGREMELKMDVKPRNISGLLLSVHSKK-DYFILQMIDGSVKAT 244
+F + G+ K V F+VG ++ ++ + + +G+LL V S+K D ++MID +
Sbjct: 214 TYF-DGTGFAKAVGGFKVGLDLLVEFEFRTTRPTGVLLGVSSQKMDGMGIEMIDEKLMFH 272
Query: 245 VDNGKGPISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSET- 303
VDNG G +AIY P C+GQWH + A K KN + + VD D P S+ T
Sbjct: 273 VDNGAGRFTAIYDAEIPGHMCNGQWHKVTAKKIKNRLELVVDGNQVDAQS---PNSASTS 329
Query: 304 -DTNNAVFIGGHP 315
DTN+ VF+GG P
Sbjct: 330 ADTNDPVFVGGFP 342
>pdb|2JD4|A Chain A, Mouse Laminin Alpha1 Chain, Domains Lg4-5
pdb|2JD4|B Chain B, Mouse Laminin Alpha1 Chain, Domains Lg4-5
Length = 383
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 170/327 (51%), Gaps = 18/327 (5%)
Query: 8 GTSKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHY 67
G S++S + P + + + I+T + G+I+YVA +DY L +++G++H+
Sbjct: 25 GLSQNSHLVLPLQQSDVRKRLQVQLSIRTFAS-SGLIYYVAHQNQMDYATLQLQEGRLHF 83
Query: 68 SFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFG 127
F+ G G +S L+ DG+WHTV+ + + +DGQ G + TL++
Sbjct: 84 MFDLGKGRTKVSH-PALLSDGKWHTVKTEYIKRKAFMTVDGQESPSVTVVGKATTLDVER 142
Query: 128 PFYLGGVPLNTSTLVRGNLG-LNDTFVGCLRNLKSN-NKLVQDKHTS-SGVIPCSDKTES 184
YLGG+P S N+G + + C+ + N +L +D+ S S V C +
Sbjct: 143 KLYLGGLP---SHYRARNIGTITHSIPACIGEIMVNGQQLDKDRPLSASAVDRCYVVAQE 199
Query: 185 GVFFYNSGGYVKGVEQFRVGREMELKMDVKPRNISGLLLSVHSKK-DYFILQMIDGSVKA 243
G FF SG E ++V ++++ ++ + + +G+LL + S K D L+++DG V
Sbjct: 200 GTFFEGSGYAALVKEGYKVRLDLQITLEFRTTSKNGVLLGISSAKVDAIGLEIVDGKVLF 259
Query: 244 TVDNGKGPISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVD--SMTTDKPGLGPPGSS 301
V+NG G I+A Y P CDG+WHT+ A K+K+ I + VD S+ + P S+
Sbjct: 260 HVNNGAGRITATYQPRAARALCDGKWHTLQAHKSKHRIVLTVDGNSVRAESPHT---HST 316
Query: 302 ETDTNNAVFIGGHPFL----SLSSKKS 324
DTN+ +++GG+P SLSS+ S
Sbjct: 317 SADTNDPIYVGGYPAHIKQNSLSSRAS 343
>pdb|1QU0|A Chain A, Crystal Structure Of The Fifth Laminin G-like Module Of
The Mouse Laminin Alpha2 Chain
pdb|1QU0|B Chain B, Crystal Structure Of The Fifth Laminin G-like Module Of
The Mouse Laminin Alpha2 Chain
pdb|1QU0|C Chain C, Crystal Structure Of The Fifth Laminin G-like Module Of
The Mouse Laminin Alpha2 Chain
pdb|1QU0|D Chain D, Crystal Structure Of The Fifth Laminin G-like Module Of
The Mouse Laminin Alpha2 Chain
Length = 191
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 78/142 (54%), Gaps = 7/142 (4%)
Query: 177 PCSDKTESGVFFYNSGGYVKGVEQFRVGREMELKMDVKPRNISGLLLSVHSKK-DYFILQ 235
P + ESG +F + G+ K V F+VG ++ ++ + + +G+LL + S+K D ++
Sbjct: 2 PLAANAESGTYF-DGTGFAKAVGGFKVGLDLLVEFEFRTTRPTGVLLGISSQKMDGMGIE 60
Query: 236 MIDGSVKATVDNGKGPISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGL 295
MID + VDNG G +AIY P C+GQWH + A K KN + + VD D
Sbjct: 61 MIDEKLMFHVDNGAGRFTAIYDAEIPGHMCNGQWHKVTAKKIKNRLELVVDGNQVDAQS- 119
Query: 296 GPPGSSET--DTNNAVFIGGHP 315
P S+ T DTN+ VF+GG P
Sbjct: 120 --PNSASTSADTNDPVFVGGFP 139
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 68/148 (45%), Gaps = 8/148 (5%)
Query: 17 YPTITGRFKNKFDFSIDIK-TTSEQDGIIFYVADVKHIDYVALYVKDGQIHYSFNCGSGP 75
+ G FK D ++ + T+ G++ ++ K +D + + + D ++ + + G+G
Sbjct: 18 FAKAVGGFKVGLDLLVEFEFRTTRPTGVLLGISSQK-MDGMGIEMIDEKLMFHVDNGAGR 76
Query: 76 MALSSGDKL---ILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFGPFYLG 132
++ + +G+WH V + + +L +DG V +S + + P ++G
Sbjct: 77 FTAIYDAEIPGHMCNGQWHKVTAKKIKNRLELVVDGNQVDAQSPNSASTSADTNDPVFVG 136
Query: 133 GVPLNTSTLVRGNLGLNDTFVGCLRNLK 160
G P L + L N F GC+R+LK
Sbjct: 137 GFP---GGLNQFGLTTNIRFRGCIRSLK 161
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
Length = 1245
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/320 (24%), Positives = 139/320 (43%), Gaps = 69/320 (21%)
Query: 30 FSIDIKTTSEQDGIIFYV-------ADVKH-----IDYVALYVKDGQIHYSFNCGSGPMA 77
S D +TT E +G+I + D KH +D+ A+ + DG ++ + GSG +
Sbjct: 446 ISFDFRTT-EPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDMGSGTIK 504
Query: 78 LSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFGPFYLGGVPLN 137
+ + K + DGEW+ V+F R SG + ++ + + G S+ L++ YLGG+P N
Sbjct: 505 IKALQKKVNDGEWYHVDFQRDGRSGTISVN-TLRTPYTAPGESEILDLDDELYLGGLPEN 563
Query: 138 TSTLV----RGNLGLNDTFVGCLRNL-----KSNNKLVQDKHTSSGVIP-CSDKT----- 182
+ LV LN +VGC+R+L + + + + +++GV P CS +T
Sbjct: 564 KAGLVFPTEVWTALLNYGYVGCIRDLFIDGQSKDIRQMAEVQSTAGVKPSCSRETAKPCL 623
Query: 183 ---------------------------------ESGVFFYNSGGYVKGVEQFRVGREME- 208
E+ V Y+ ++K + E E
Sbjct: 624 SNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYDGSMFMKIQLPVVMHTEAED 683
Query: 209 LKMDVKPRNISGLLLSVHSK--KDYFILQMIDGSVKATVDNGKGPISAIYTPSDPYFFCD 266
+ + + + G+L++ S+ D L++ G VK TV+ GKGP + Y D
Sbjct: 684 VSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKLTVNLGKGPETLFAG----YNLND 739
Query: 267 GQWHTIVAIKTKNVISVAVD 286
+WHT+ ++ + + VD
Sbjct: 740 NEWHTVRVVRRGKSLKLTVD 759
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 76/316 (24%), Positives = 124/316 (39%), Gaps = 50/316 (15%)
Query: 16 EYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHYSFNCGSGP 75
E ++ RF+++ + I + TTS D + L + G++ + N G GP
Sbjct: 680 EAEDVSLRFRSQRAYGILMATTSRDSA-----------DTLRLELDAGRVKLTVNLGKGP 728
Query: 76 MALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLN--------IFG 127
L +G L D EWHTV R+ S KL +D Q G+ G L I
Sbjct: 729 ETLFAGYNLN-DNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFHNIETGIITE 787
Query: 128 PFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNKLVQDKHTSSGVIPCSDKTESG-- 185
YL VP N F+G L++L N D + + C G
Sbjct: 788 RRYLSSVPSN--------------FIGHLQSLTFNGMAYIDLCKNGDIDYCELNARFGFR 833
Query: 186 ------VFFYNSGGYVKGVEQFRVGREMELKMDVKPRNISGLLL-SVHSKKDYFILQMID 238
V F YV + + M L K ++ GL+L + D+ +++++
Sbjct: 834 NIIADPVTFKTKSSYV-ALATLQAYTSMHLFFQFKTTSLDGLILYNSGDGNDFIVVELVK 892
Query: 239 GSVKATVDNGKGPISAIYTPSDPYFFCDGQWHTI-VAIKTKNVISVAVDSMTTDKPGLGP 297
G + D G G + + P D QWH + ++ T N+ +V +D+ T +
Sbjct: 893 GYLHYVFDLGNGANLIKGSSNKP--LNDNQWHNVMISRDTSNLHTVKIDTKITTQI---T 947
Query: 298 PGSSETDTNNAVFIGG 313
G+ D + ++IGG
Sbjct: 948 AGARNLDLKSDLYIGG 963
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 76/367 (20%), Positives = 136/367 (37%), Gaps = 71/367 (19%)
Query: 15 IEYPTITGRFKN--------KFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDG--- 63
+E+P G++ + + S +KT S + G++ Y D D++ L + G
Sbjct: 1 LEFPGAEGQWTRFPKWNACCESEMSFQLKTRSAR-GLVLYFDDEGFCDFLELILTRGGRL 59
Query: 64 QIHYSFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTL 123
Q+ +S C L+ D + DG WH V RQ + L ID E K + +
Sbjct: 60 QLSFSIFCAEPATLLT--DTPVNDGAWHNVRIRRQFRNTTLFIDQVEAKWVEVKSKRRDM 117
Query: 124 NIFGPFYLGGVPLNTST----LVRGNLGLNDTFVGCLRNLKSNN-----------KLVQD 168
+F ++GG+P L ++ + F G +R+++ + KL +
Sbjct: 118 TVFSGLFVGGLPPELRAAALKLTLASVREREPFKGWIRDVRVQSSLALPVDSGEVKLDDE 177
Query: 169 KHTSSGVIPCSDKTESGVFFYNSGGYVKGVEQFRV---------------GREM------ 207
S G PC E +GG V+ V G+E
Sbjct: 178 PPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFK 237
Query: 208 -------------------ELKMDVKPRNISGLLLSVHSKKDYFILQMIDGSVKATVDNG 248
E+ + K +GL+L DY L + +G+V ++ G
Sbjct: 238 GSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGKSADYVNLALKNGAVSLVINLG 297
Query: 249 KGPISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSETDTNNA 308
G A+ P + F D WH + + ++++VD + T G + +++
Sbjct: 298 SGAFEALVEPVNGKFN-DNAWHDVKVTRNLRQVTISVDGILT-TTGYTQEDYTMLGSDDF 355
Query: 309 VFIGGHP 315
++GG P
Sbjct: 356 FYVGGSP 362
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/310 (21%), Positives = 128/310 (41%), Gaps = 43/310 (13%)
Query: 37 TSEQDGIIFYVADVKHIDYVALYVKDGQIHYSFNCGSGPMA--LSSGDKLILDGEWHTVE 94
T +++G++ + K DYV L +K+G + N GSG + + D WH V+
Sbjct: 264 TLQRNGLMLHTG--KSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVK 321
Query: 95 FSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFGPFYLGGVPLNTSTLVRGNLGLNDTFVG 154
+R + +DG + G ++ L FY+GG P ST +++ F+G
Sbjct: 322 VTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSP---STADLPGSPVSNNFMG 378
Query: 155 CLRNLKSNNKLVQ-----------DKHTSSGVIP--CSDKTESGVFFYNSGGYVKGVEQF 201
CL+ + N V+ K GV+ C + + + + ++
Sbjct: 379 CLKEVVYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPITFETPESFISLPKW 438
Query: 202 RVGREMELKMDVKPRNISGLLLSVHSKK--------------DYFILQMIDGSVKATVDN 247
+ + D + +GL+L H K D+F ++M+DG + +D
Sbjct: 439 NAKKTGSISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDM 498
Query: 248 GKG--PISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSETDT 305
G G I A+ + DG+W+ + + +++V+++ T P P S D
Sbjct: 499 GSGTIKIKALQKKVN-----DGEWYHVDFQRDGRSGTISVNTLRT--PYTAPGESEILDL 551
Query: 306 NNAVFIGGHP 315
++ +++GG P
Sbjct: 552 DDELYLGGLP 561
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 11/179 (6%)
Query: 10 SKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHYSF 69
+KSS + T+ F KTTS DG+I Y + + D++ + + G +HY F
Sbjct: 844 TKSSYVALATLQAYTSMHLFFQF--KTTS-LDGLILYNSGDGN-DFIVVELVKGYLHYVF 899
Query: 70 NCGSGPMALS-SGDKLILDGEWHTVEFSRQQLS-GKLKIDGQVVAEGESKGSSKTLNIFG 127
+ G+G + S +K + D +WH V SR + +KID ++ + ++ L++
Sbjct: 900 DLGNGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQ--ITAGARNLDLKS 957
Query: 128 PFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNKLVQDKHTSSGVIPCSDKTESGV 186
Y+GGV T + + + F GCL ++ N +L S + C+ + E G
Sbjct: 958 DLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNGRL---PDLISDALFCNGQIERGC 1013
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 54 DYVALYVKDGQIHYSFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAE 113
DY+ L++ G+I FN G+ +A+ + +I DG++H V F+R + L++D V E
Sbjct: 1109 DYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIE 1168
Query: 114 GESKGSSKTLNIF 126
G + L IF
Sbjct: 1169 RYPAG--RQLTIF 1179
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 87/382 (22%), Positives = 157/382 (41%), Gaps = 93/382 (24%)
Query: 30 FSIDIKTTSEQDGIIFYV-------ADVKH-----IDYVALYVKDGQIHYSFNCGSGPMA 77
S D +TT E +G+I + D KH +D+ A+ + DG ++ + GSG +
Sbjct: 221 ISFDFRTT-EPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDMGSGTIK 279
Query: 78 LSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFGPFYLGGVPLN 137
+ + K + DGEW+ V+F R SG + ++ + + G S+ L++ YLGG+P N
Sbjct: 280 IKALQKKVNDGEWYHVDFQRDGRSGTISVN-TLRTPYTAPGESEILDLDDELYLGGLPEN 338
Query: 138 TSTLV----RGNLGLNDTFVGCLRNL-----KSNNKLVQDKHTSSGVIP-CSDKT----- 182
+ LV LN +VGC+R+L + + + + +++GV P CS +T
Sbjct: 339 KAGLVFPTEVWTALLNYGYVGCIRDLFIDGQSKDIRQMAEVQSTAGVKPSCSRETAKPCL 398
Query: 183 ---------------------------------ESGVFFYNSGGYVKGVEQFRVGREME- 208
E+ V Y+ ++K + E E
Sbjct: 399 SNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYDGSMFMKIQLPVVMHTEAED 458
Query: 209 LKMDVKPRNISGLLLSVHSK--KDYFILQMIDGSVKATV---------DNGKGPISAIYT 257
+ + + + G+L++ S+ D L++ G VK TV ++ KGP T
Sbjct: 459 VSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKLTVNLDCIRINCNSSKGP----ET 514
Query: 258 PSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSETDTNNAVFIGGHPFL 317
Y D +WHT+ ++ + + VD D+ + G H L
Sbjct: 515 LFAGYNLNDNEWHTVRVVRRGKSLKLTVD----DQQAM-----------TGQMAGDHTRL 559
Query: 318 SLSSKKSGPRTKRRSVFLINAN 339
+ ++G T+RR + + +N
Sbjct: 560 EFHNIETGIITERRYLSSVPSN 581
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/310 (21%), Positives = 128/310 (41%), Gaps = 43/310 (13%)
Query: 37 TSEQDGIIFYVADVKHIDYVALYVKDGQIHYSFNCGSGPMA--LSSGDKLILDGEWHTVE 94
T +++G++ + K DYV L +K+G + N GSG + + D WH V+
Sbjct: 39 TLQRNGLMLHTG--KSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVK 96
Query: 95 FSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFGPFYLGGVPLNTSTLVRGNLGLNDTFVG 154
+R + +DG + G ++ L FY+GG P ST +++ F+G
Sbjct: 97 VTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSP---STADLPGSPVSNNFMG 153
Query: 155 CLRNLKSNNKLVQ-----------DKHTSSGVIP--CSDKTESGVFFYNSGGYVKGVEQF 201
CL+ + N V+ K GV+ C + + + + ++
Sbjct: 154 CLKEVVYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPITFETPESFISLPKW 213
Query: 202 RVGREMELKMDVKPRNISGLLLSVHSKK--------------DYFILQMIDGSVKATVDN 247
+ + D + +GL+L H K D+F ++M+DG + +D
Sbjct: 214 NAKKTGSISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDM 273
Query: 248 GKG--PISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSETDT 305
G G I A+ + DG+W+ + + +++V+++ T P P S D
Sbjct: 274 GSGTIKIKALQKKVN-----DGEWYHVDFQRDGRSGTISVNTLRT--PYTAPGESEILDL 326
Query: 306 NNAVFIGGHP 315
++ +++GG P
Sbjct: 327 DDELYLGGLP 336
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 78/320 (24%), Positives = 124/320 (38%), Gaps = 49/320 (15%)
Query: 16 EYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDY----VALYVKDGQIHYSFNC 71
E ++ RF+++ + I + TTS AD ++ V L V I + N
Sbjct: 455 EAEDVSLRFRSQRAYGILMATTSRDS------ADTLRLELDAGRVKLTVNLDCIRINCNS 508
Query: 72 GSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLN------- 124
GP L +G L D EWHTV R+ S KL +D Q G+ G L
Sbjct: 509 SKGPETLFAGYNLN-DNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFHNIETG 567
Query: 125 -IFGPFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNKLVQDKHTSSGVIPCSDKTE 183
I YL VP N F+G L++L N D + + C
Sbjct: 568 IITERRYLSSVPSN--------------FIGHLQSLTFNGMAYIDLCKNGDIDYCELNAR 613
Query: 184 SG--------VFFYNSGGYVKGVEQFRVGREMELKMDVKPRNISGLLL-SVHSKKDYFIL 234
G V F YV + + M L K ++ GL+L + D+ ++
Sbjct: 614 FGFRNIIADPVTFKTKSSYV-ALATLQAYTSMHLFFQFKTTSLDGLILYNSGDGNDFIVV 672
Query: 235 QMIDGSVKATVDNGKGPISAIYTPSDPYFFCDGQWHTI-VAIKTKNVISVAVDSMTTDKP 293
+++ G + D G G + + P D QWH + ++ T N+ +V +D+ T +
Sbjct: 673 ELVKGYLHYVFDLGNGANLIKGSSNKP--LNDNQWHNVMISRDTSNLHTVKIDTKITTQI 730
Query: 294 GLGPPGSSETDTNNAVFIGG 313
G+ D + ++IGG
Sbjct: 731 ---TAGARNLDLKSDLYIGG 747
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 11/179 (6%)
Query: 10 SKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHYSF 69
+KSS + T+ F KTTS DG+I Y + + D++ + + G +HY F
Sbjct: 628 TKSSYVALATLQAYTSMHLFFQF--KTTS-LDGLILYNSGDGN-DFIVVELVKGYLHYVF 683
Query: 70 NCGSGPMALS-SGDKLILDGEWHTVEFSRQQLS-GKLKIDGQVVAEGESKGSSKTLNIFG 127
+ G+G + S +K + D +WH V SR + +KID ++ + ++ L++
Sbjct: 684 DLGNGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQ--ITAGARNLDLKS 741
Query: 128 PFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNKLVQDKHTSSGVIPCSDKTESGV 186
Y+GGV T + + + F GCL ++ N +L S + C+ + E G
Sbjct: 742 DLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNGRL---PDLISDALFCNGQIERGC 797
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 54 DYVALYVKDGQIHYSFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAE 113
DY+ L++ G+I FN G+ +A+ + +I DG++H V F+R + L++D V E
Sbjct: 893 DYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIE 952
Query: 114 GESKGSSKTLNIF 126
G + L IF
Sbjct: 953 RYPAG--RQLTIF 963
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
Query: 208 ELKMDVKPRNISGLLLSVHSKKDYFILQMIDGSVKATVDNGKGPISAIYTPSDPYFFCDG 267
E+ + K +GL+L DY L + +G+V ++ G G A+ P + F D
Sbjct: 32 EITLSFKTLQRNGLMLHTGKSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGK-FNDN 90
Query: 268 QWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSETDTNNAVFIGGHP 315
WH + + ++++VD + T G + +++ ++GG P
Sbjct: 91 AWHDVKVTRNLRQVTISVDGILT-TTGYTQEDYTMLGSDDFFYVGGSP 137
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
pdb|3R05|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
Length = 1254
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 77/329 (23%), Positives = 139/329 (42%), Gaps = 78/329 (23%)
Query: 30 FSIDIKTTSEQDGIIFYV-------ADVKH-----IDYVALYVKDGQIHYSFNCGSGPMA 77
S D +TT E +G+I + D KH +D+ A+ + DG ++ + GSG +
Sbjct: 446 ISFDFRTT-EPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDMGSGTIK 504
Query: 78 LSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFGPFYLGGVPLN 137
+ + K + DGEW+ V+F R SG + ++ + + G S+ L++ YLGG+P N
Sbjct: 505 IKALQKKVNDGEWYHVDFQRDGRSGTISVN-TLRTPYTAPGESEILDLDDELYLGGLPEN 563
Query: 138 TSTLV----RGNLGLNDTFVGCLRNL-----KSNNKLVQDKHTSSGVIP-CSDKT----- 182
+ LV LN +VGC+R+L + + + + +++GV P CS +T
Sbjct: 564 KAGLVFPTEVWTALLNYGYVGCIRDLFIDGQSKDIRQMAEVQSTAGVKPSCSRETAKPCL 623
Query: 183 ---------------------------------ESGVFFYNSGGYVKGVEQFRVGREME- 208
E+ V Y+ ++K + E E
Sbjct: 624 SNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYDGSMFMKIQLPVVMHTEAED 683
Query: 209 LKMDVKPRNISGLLLSVHSK--KDYFILQMIDGSVKATV---------DNGKGPISAIYT 257
+ + + + G+L++ S+ D L++ G VK TV ++ KGP +
Sbjct: 684 VSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKLTVNLDCIRINCNSSKGPETLFAG 743
Query: 258 PSDPYFFCDGQWHTIVAIKTKNVISVAVD 286
Y D +WHT+ ++ + + VD
Sbjct: 744 ----YNLNDNEWHTVRVVRRGKSLKLTVD 768
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 77/367 (20%), Positives = 137/367 (37%), Gaps = 71/367 (19%)
Query: 15 IEYPTITGRFKN--------KFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDG--- 63
+E+P G++ + + S +KT S + G++ Y D D++ L + G
Sbjct: 1 LEFPGAEGQWTRFPKWNACCESEMSFQLKTRSAR-GLVLYFDDEGFCDFLELILTRGGRL 59
Query: 64 QIHYSFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTL 123
Q+ +S C L+ D + DG WH V RQ + L ID E K + +
Sbjct: 60 QLSFSIFCAEPATLLT--DTPVNDGAWHNVRIRRQFRNTTLFIDQVEAKWVEVKSKRRDM 117
Query: 124 NIFGPFYLGGVPLNTST----LVRGNLGLNDTFVGCLRNLKSNN-----------KLVQD 168
+F ++GG+P L ++ + F G +R+++ N+ KL +
Sbjct: 118 TVFSGLFVGGLPPELRAAALKLTLASVREREPFKGWIRDVRVNSSLALPVDSGEVKLDDE 177
Query: 169 KHTSSGVIPCSDKTESGVFFYNSGGYVKGVEQFRV---------------GREM------ 207
S G PC E +GG V+ V G+E
Sbjct: 178 PPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFK 237
Query: 208 -------------------ELKMDVKPRNISGLLLSVHSKKDYFILQMIDGSVKATVDNG 248
E+ + K +GL+L DY L + +G+V ++ G
Sbjct: 238 GSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGKSADYVNLALKNGAVSLVINLG 297
Query: 249 KGPISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSETDTNNA 308
G A+ P + F D WH + + ++++VD + T G + +++
Sbjct: 298 SGAFEALVEPVNGKFN-DNAWHDVKVTRNLRQVTISVDGILT-TTGYTQEDYTMLGSDDF 355
Query: 309 VFIGGHP 315
++GG P
Sbjct: 356 FYVGGSP 362
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 67/310 (21%), Positives = 128/310 (41%), Gaps = 43/310 (13%)
Query: 37 TSEQDGIIFYVADVKHIDYVALYVKDGQIHYSFNCGSGPMA--LSSGDKLILDGEWHTVE 94
T +++G++ + K DYV L +K+G + N GSG + + D WH V+
Sbjct: 264 TLQRNGLMLHTG--KSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVK 321
Query: 95 FSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFGPFYLGGVPLNTSTLVRGNLGLNDTFVG 154
+R + +DG + G ++ L FY+GG P ST +++ F+G
Sbjct: 322 VTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSP---STADLPGSPVSNNFMG 378
Query: 155 CLRNLKSNNKLVQ-----------DKHTSSGVIP--CSDKTESGVFFYNSGGYVKGVEQF 201
CL+ + N V+ K GV+ C + + + + ++
Sbjct: 379 CLKEVVYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPITFETPESFISLPKW 438
Query: 202 RVGREMELKMDVKPRNISGLLLSVHSKK--------------DYFILQMIDGSVKATVDN 247
+ + D + +GL+L H K D+F ++M+DG + +D
Sbjct: 439 NAKKTGSISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDM 498
Query: 248 GKG--PISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSETDT 305
G G I A+ + DG+W+ + + +++V+++ T P P S D
Sbjct: 499 GSGTIKIKALQKKVN-----DGEWYHVDFQRDGRSGTISVNTLRT--PYTAPGESEILDL 551
Query: 306 NNAVFIGGHP 315
++ +++GG P
Sbjct: 552 DDELYLGGLP 561
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/320 (24%), Positives = 124/320 (38%), Gaps = 49/320 (15%)
Query: 16 EYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDY----VALYVKDGQIHYSFNC 71
E ++ RF+++ + I + TTS AD ++ V L V I + N
Sbjct: 680 EAEDVSLRFRSQRAYGILMATTSRDS------ADTLRLELDAGRVKLTVNLDCIRINCNS 733
Query: 72 GSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLN------- 124
GP L +G L D EWHTV R+ S KL +D Q G+ G L
Sbjct: 734 SKGPETLFAGYNLN-DNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFHNIETG 792
Query: 125 -IFGPFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNKLVQDKHTSSGVIPCSDKTE 183
I YL VP N F+G L++L N D + + C
Sbjct: 793 IITERRYLSSVPSN--------------FIGHLQSLTFNGMAYIDLCKNGDIDYCELNAR 838
Query: 184 SG--------VFFYNSGGYVKGVEQFRVGREMELKMDVKPRNISGLLL-SVHSKKDYFIL 234
G V F YV + + M L K ++ GL+L + D+ ++
Sbjct: 839 FGFRNIIADPVTFKTKSSYV-ALATLQAYTSMHLFFQFKTTSLDGLILYNSGDGNDFIVV 897
Query: 235 QMIDGSVKATVDNGKGPISAIYTPSDPYFFCDGQWHTI-VAIKTKNVISVAVDSMTTDKP 293
+++ G + D G G + + P D QWH + ++ T N+ +V +D+ T +
Sbjct: 898 ELVKGYLHYVFDLGNGANLIKGSSNKP--LNDNQWHNVMISRDTSNLHTVKIDTKITTQI 955
Query: 294 GLGPPGSSETDTNNAVFIGG 313
G+ D + ++IGG
Sbjct: 956 ---TAGARNLDLKSDLYIGG 972
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 11/179 (6%)
Query: 10 SKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHYSF 69
+KSS + T+ F KTTS DG+I Y + + D++ + + G +HY F
Sbjct: 853 TKSSYVALATLQAYTSMHLFFQF--KTTS-LDGLILYNSGDGN-DFIVVELVKGYLHYVF 908
Query: 70 NCGSGPMALS-SGDKLILDGEWHTVEFSRQQLS-GKLKIDGQVVAEGESKGSSKTLNIFG 127
+ G+G + S +K + D +WH V SR + +KID ++ + ++ L++
Sbjct: 909 DLGNGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQ--ITAGARNLDLKS 966
Query: 128 PFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNKLVQDKHTSSGVIPCSDKTESGV 186
Y+GGV T + + + F GCL ++ N +L S + C+ + E G
Sbjct: 967 DLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNGRL---PDLISDALFCNGQIERGC 1022
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 54 DYVALYVKDGQIHYSFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAE 113
DY+ L++ G+I FN G+ +A+ + +I DG++H V F+R + L++D V E
Sbjct: 1118 DYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIE 1177
Query: 114 GESKGSSKTLNIF 126
G + L IF
Sbjct: 1178 RYPAG--RQLTIF 1188
>pdb|3SH4|A Chain A, Laminin G Like Domain 3 From Human Perlecan
pdb|3SH5|A Chain A, Calcium-Bound Laminin G Like Domain 3 From Human Perlecan
Length = 195
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 71/134 (52%), Gaps = 8/134 (5%)
Query: 30 FSIDIKTTSEQDGIIFYVADVKHI----DYVALYVKDGQIHYSFNCGSGPMALSSGDKLI 85
++++T++ +++ +V D+++L ++DG + + + GSG L S D I
Sbjct: 34 IELEVRTSTASGLLLWQGVEVGEAGQGKDFISLGLQDGHLVFRYQLGSGEARLVSEDP-I 92
Query: 86 LDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFGPFYLGGVPLNTSTLVRGN 145
DGEWH V R+ G +++DG+ + G S G + +N G Y+GG P + +TL G
Sbjct: 93 NDGEWHRVTALREGRRGSIQVDGEELVSGRSPGPNVAVNAKGSVYIGGAP-DVATLTGGR 151
Query: 146 LGLNDTFVGCLRNL 159
+ GC++NL
Sbjct: 152 --FSSGITGCVKNL 163
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 12/114 (10%)
Query: 209 LKMDVKPRNISGLLL-------SVHSKKDYFILQMIDGSVKATVDNGKGPISAIYTPSDP 261
++++V+ SGLLL KD+ L + DG + G G A DP
Sbjct: 34 IELEVRTSTASGLLLWQGVEVGEAGQGKDFISLGLQDGHLVFRYQLGSG--EARLVSEDP 91
Query: 262 YFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSETDTNNAVFIGGHP 315
DG+WH + A++ S+ VD G P + + +V+IGG P
Sbjct: 92 --INDGEWHRVTALREGRRGSIQVDGEELVS-GRSPGPNVAVNAKGSVYIGGAP 142
>pdb|3V64|A Chain A, Crystal Structure Of Agrin And Lrp4
pdb|3V64|B Chain B, Crystal Structure Of Agrin And Lrp4
pdb|3V65|A Chain A, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|C Chain C, Crystal Structure Of Agrin And Lrp4 Complex
Length = 191
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 15/170 (8%)
Query: 16 EYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADV-KHIDYVALYVKDGQIHYSFNCGSG 74
E P N F+ S+ + T G++ ++ + DY+AL + DG + S++ GS
Sbjct: 27 EIPAEKALQSNHFELSLRTEATQ---GLVLWIGKAAERADYMALAIVDGHLQLSYDLGSQ 83
Query: 75 PMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFGPFYLGG- 133
P+ L S K + W + R+ G L++ + G S + L+ G +LGG
Sbjct: 84 PVVLRSTVK-VNTNRWLRIRAHREHREGSLQVGNEAPVTGSSPLGATQLDTDGALWLGGL 142
Query: 134 --VPLNTSTLVRGNLGLNDTFVGCLRNLKSNNK---LVQDKHTSSGVIPC 178
+P+ + G FVGCLR++ ++ L++D T + PC
Sbjct: 143 QKLPVGQALPKAYGTG----FVGCLRDVVVGHRQLHLLEDAVTKPELRPC 188
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 210 KMDVKPRNISGLLLSV---HSKKDYFILQMIDGSVKATVDNGKGPISAIYTPSDPYFFCD 266
++ ++ GL+L + + DY L ++DG ++ + D G P+ T
Sbjct: 40 ELSLRTEATQGLVLWIGKAAERADYMALAIVDGHLQLSYDLGSQPVVLRSTVK----VNT 95
Query: 267 GQWHTIVAIKTKNVISVAVDSMTTDKP--GLGPPGSSETDTNNAVFIGG 313
+W I A + S+ V + + P G P G+++ DT+ A+++GG
Sbjct: 96 NRWLRIRAHREHREGSLQVGN---EAPVTGSSPLGATQLDTDGALWLGG 141
>pdb|1PZ8|A Chain A, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ8|B Chain B, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ8|C Chain C, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ8|D Chain D, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ9|A Chain A, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ9|B Chain B, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
Length = 201
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 7/169 (4%)
Query: 16 EYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHYSFNCGSGP 75
E P N F+ SI KT + Q I++ ++ DY+AL + DG + ++ GS P
Sbjct: 37 EIPAEKALQSNHFELSI--KTEATQGLILWSGKGLERSDYIALAIVDGFVQMMYDLGSKP 94
Query: 76 MALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFGPFYLGGVP 135
+ L S I W ++ R Q G L++ + G S + L+ G +LGG+
Sbjct: 95 VVLRSTVP-INTNHWTHIKAYRVQREGSLQVGNEAPITGSSPLGATQLDTDGALWLGGME 153
Query: 136 LNTSTLVRGNLGLNDTFVGCLRNL---KSNNKLVQDKHTSSGVIPCSDK 181
S + + F+GC+R++ + LV+D + ++ CS K
Sbjct: 154 -RLSVAHKLPKAYSTGFIGCIRDVIVDRQELHLVEDALNNPTILHCSAK 201
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 209 LKMDVKPRNISGLLLSV---HSKKDYFILQMIDGSVKATVDNGKGPISAIYTPSDPYFFC 265
++ +K GL+L + DY L ++DG V+ D G P+ + + P
Sbjct: 49 FELSIKTEATQGLILWSGKGLERSDYIALAIVDGFVQMMYDLGSKPV--VLRSTVP--IN 104
Query: 266 DGQWHTIVAIKTKNVISVAVDSMTTDKP--GLGPPGSSETDTNNAVFIGGHPFLSLSSK 322
W I A + + S+ V + + P G P G+++ DT+ A+++GG LS++ K
Sbjct: 105 TNHWTHIKAYRVQREGSLQVGN---EAPITGSSPLGATQLDTDGALWLGGMERLSVAHK 160
>pdb|1PZ7|A Chain A, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ7|B Chain B, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
Length = 204
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 30 FSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHYSFNCGSGPMALSSGDKLILDGE 89
F + IKT + Q I++ ++ DY+AL + DG + ++ GS P+ L S I
Sbjct: 52 FELSIKTEATQGLILWSGKGLERSDYIALAIVDGFVQMMYDLGSKPVVLRSTVP-INTNH 110
Query: 90 WHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFGPFYLGGVPLNTSTLVRGNLGLN 149
W ++ R Q G L++ + G S + L+ G +LGG+ S + +
Sbjct: 111 WTHIKAYRVQREGSLQVGNEAPITGSSPLGATQLDTDGALWLGGME-RLSVAHKLPKAYS 169
Query: 150 DTFVGCLRNL---KSNNKLVQDKHTSSGVIPCSDK 181
F+GC+R++ + LV+D + ++ CS K
Sbjct: 170 TGFIGCIRDVIVDRQELHLVEDALNNPTILHCSAK 204
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 209 LKMDVKPRNISGLLLSV---HSKKDYFILQMIDGSVKATVDNGKGPISAIYTPSDPYFFC 265
++ +K GL+L + DY L ++DG V+ D G P+ + + P
Sbjct: 52 FELSIKTEATQGLILWSGKGLERSDYIALAIVDGFVQMMYDLGSKPV--VLRSTVP--IN 107
Query: 266 DGQWHTIVAIKTKNVISVAVDSMTTDKP--GLGPPGSSETDTNNAVFIGGHPFLSLSSK 322
W I A + + S+ V + + P G P G+++ DT+ A+++GG LS++ K
Sbjct: 108 TNHWTHIKAYRVQREGSLQVGN---EAPITGSSPLGATQLDTDGALWLGGMERLSVAHK 163
>pdb|1Q56|A Chain A, Nmr Structure Of The B0 Isoform Of The Agrin G3 Domain In
Its Ca2+ Bound State
Length = 195
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 30 FSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHYSFNCGSGPMALSSGDKLILDGE 89
F + IKT + Q I++ ++ DY+AL + DG + ++ GS P+ L S I
Sbjct: 43 FELSIKTEATQGLILWSGKGLERSDYIALAIVDGFVQMMYDLGSKPVVLRSTVP-INTNH 101
Query: 90 WHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFGPFYLGGVPLNTSTLVRGNLGLN 149
W ++ R Q G L++ + G S + L+ G +LGG+ S + +
Sbjct: 102 WTHIKAYRVQREGSLQVGNEAPITGSSPLGATQLDTDGALWLGGME-RLSVAHKLPKAYS 160
Query: 150 DTFVGCLRNL---KSNNKLVQDKHTSSGVIPCSDK 181
F+GC+R++ + LV+D + ++ CS K
Sbjct: 161 TGFIGCIRDVIVDRQELHLVEDALNNPTILHCSAK 195
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 209 LKMDVKPRNISGLLLSVH---SKKDYFILQMIDGSVKATVDNGKGPISAIYTPSDPYFFC 265
++ +K GL+L + DY L ++DG V+ D G P+ + + P
Sbjct: 43 FELSIKTEATQGLILWSGKGLERSDYIALAIVDGFVQMMYDLGSKPV--VLRSTVP--IN 98
Query: 266 DGQWHTIVAIKTKNVISVAVDSMTTDKP--GLGPPGSSETDTNNAVFIGGHPFLSLSSK 322
W I A + + S+ V + + P G P G+++ DT+ A+++GG LS++ K
Sbjct: 99 TNHWTHIKAYRVQREGSLQVGN---EAPITGSSPLGATQLDTDGALWLGGMERLSVAHK 154
>pdb|2WJS|A Chain A, Crystal Structure Of The Lg1-3 Region Of The Laminin
Alpha2 Chain
Length = 608
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/309 (22%), Positives = 130/309 (42%), Gaps = 36/309 (11%)
Query: 37 TSEQDGIIFYVADVKHIDYVALYVKDGQIHYSFNCGSGPMALSSGDKLILDGEWHTVEFS 96
T+ D ++FY+ K ID++A+ ++ G++ + ++ GSG + D I D W+ +E S
Sbjct: 41 TAVADNLLFYLGSAKFIDFLAIEMRKGKVSFLWDVGSGVGRVEYPDLTIDDSYWYRIEAS 100
Query: 97 RQQLSGKLKI---DGQVVAEGESKGSSKT--------LNIFGPFYLGGVPLNTSTLVRGN 145
R +G + + DG + S S + ++ ++GG+ T + + +
Sbjct: 101 RTGRNGSISVRALDGPKASMVPSTYHSVSPPGYTILDVDANAMLFVGGL---TGKIKKAD 157
Query: 146 LGLNDTFVGCLRNLKSNNKLV-----QDKHTSSGVIPCSDKTE--SGVFFYNSGGYVKGV 198
TF GC+ +NK + ++K S + E G ++ GY
Sbjct: 158 AVRVITFTGCMGETYFDNKPIGLWNFREKEGDCKGCTVSPQVEDSEGTIQFDGEGYALVS 217
Query: 199 EQFRVGREMELKMDVKPRNISG----LLLSVHSKKDYFILQMIDGSVKATVDNGKGPISA 254
R + M K R S + L+ KD+ +++ DG VK + D G G S
Sbjct: 218 RPIRWYPNISTVM-FKFRTFSSSALLMYLATRDLKDFMSVELSDGHVKVSYDLGSGMTSV 276
Query: 255 IYTPSDPYFFCDGQWH--TIVAI-KTKNVISVAVDSMTTDKPGLGPPGSS---ETDTNNA 308
+ + DG+W T+ I K N+ V +DS + G++ + ++
Sbjct: 277 VSNQN----HNDGKWKAFTLSRIQKQANISIVDIDSNQEENVATSSSGNNFGLDLKADDK 332
Query: 309 VFIGGHPFL 317
++ GG P L
Sbjct: 333 IYFGGLPTL 341
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/289 (20%), Positives = 118/289 (40%), Gaps = 18/289 (6%)
Query: 37 TSEQDGIIFYVADVKHIDYVALYVKDGQIHYSFNCGSGPMALSSGDKLILDGEWHTVEFS 96
T ++ Y+A D++++ + DG + S++ GSG ++ S DG+W S
Sbjct: 235 TFSSSALLMYLATRDLKDFMSVELSDGHVKVSYDLGSGMTSVVSNQNH-NDGKWKAFTLS 293
Query: 97 RQQLSGKLKIDGQVVAEGESKGSSKTLNIFG-------PFYLGGVPLNTSTLVRGNLGLN 149
R Q + I + E+ +S + N FG Y GG+P T +R + +
Sbjct: 294 RIQKQANISIVDIDSNQEENVATSSSGNNFGLDLKADDKIYFGGLP--TLRNLRPEVNVK 351
Query: 150 DTFVGCLRNL---KSNNKLVQDKHTSSGVIPCSDKTESGVFFYNSGGYVKGVEQFRVGRE 206
+ GCL+++ ++ ++ CS + V F G VG E
Sbjct: 352 -KYSGCLKDIEISRTPYNILSSPDYVGVTKGCSLENVYTVSFPKPGFVELAAVSIDVGTE 410
Query: 207 MELKMDVKPRNISGLLLSVHSKKDYFILQMIDGSVKATVDNGKGPISAIYTPSDPYFFCD 266
+ L + +LL + Y+ + + G ++ + +G + I +P F D
Sbjct: 411 INLSFSTR-NESGIILLGSGGGQAYYAIFLNKGRLEVHLSSGTRTMRKIVIKPEPNRFHD 469
Query: 267 GQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSETDTNNAVFIGGHP 315
G+ H++ +T+ + +V +D D+ + + +F+GG P
Sbjct: 470 GREHSVHVERTRGIFTVQIDE---DRRHMQNLTEEQPIEVKKLFVGGAP 515
>pdb|3ASI|A Chain A, Alpha-Neurexin-1 Ectodomain Fragment; Lns5-Egf3-Lns6
Length = 410
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 83/178 (46%), Gaps = 11/178 (6%)
Query: 10 SKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHYSF 69
+KSS + T+ F KTTS DG+I Y + + D++ + + G +HY F
Sbjct: 12 TKSSYVALATLQAYTSMHLFFQF--KTTS-LDGLILYNSGDGN-DFIVVELVKGYLHYVF 67
Query: 70 NCGSGP-MALSSGDKLILDGEWHTVEFSRQQLS-GKLKIDGQVVAEGESKGSSKTLNIFG 127
+ G+G + S +K + D +WH V SR + +KID ++ + ++ L++
Sbjct: 68 DLGNGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQ--ITAGARNLDLKS 125
Query: 128 PFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNKLVQDKHTSSGVIPCSDKTESG 185
Y+GGV T + + + F GCL ++ N +L S + C+ + E G
Sbjct: 126 DLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNGRL---PDLISDALFCNGQIERG 180
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 54 DYVALYVKDGQIHYSFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAE 113
DY+ L++ G+I FN G+ +A+ + +I DG++H V F+R + L++D V E
Sbjct: 277 DYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIE 336
Query: 114 GESKGSSKTLNIF 126
G + L IF
Sbjct: 337 RYPAG--RQLTIF 347
>pdb|2R16|A Chain A, Crystal Structure Of Bovine Neurexin 1 Alpha LnsLG DOMAIN
4 (With No Splice Insert)
Length = 182
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 54/130 (41%), Gaps = 20/130 (15%)
Query: 16 EYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHYSFNCGSGP 75
E ++ RF+++ + I + TTS D + L + G++ + N G GP
Sbjct: 27 EAEDVSLRFRSQRAYGILMATTSRDSA-----------DTLRLELDAGRVKLTVNLGKGP 75
Query: 76 MALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLN--------IFG 127
L +G L D EWHTV R+ S KL +D Q G+ G L I
Sbjct: 76 ETLFAGYNLN-DNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFHNIETGIITE 134
Query: 128 PFYLGGVPLN 137
YL VP N
Sbjct: 135 RRYLSSVPSN 144
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 21/126 (16%)
Query: 208 ELKMDVKPRNISGLLLSVHSK--KDYFILQMIDGSVKATVDNGKGPISAIYTPSDPYFFC 265
++ + + + G+L++ S+ D L++ G VK TV+ GKGP T Y
Sbjct: 30 DVSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKLTVNLGKGP----ETLFAGYNLN 85
Query: 266 DGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSETDTNNAVFIGGHPFLSLSSKKSG 325
D +WHT+ ++ + + VD D+ + G H L + ++G
Sbjct: 86 DNEWHTVRVVRRGKSLKLTVD----DQQAM-----------TGQMAGDHTRLEFHNIETG 130
Query: 326 PRTKRR 331
T+RR
Sbjct: 131 IITERR 136
>pdb|2R1D|A Chain A, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|B Chain B, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|C Chain C, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|D Chain D, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|E Chain E, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|F Chain F, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|G Chain G, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|H Chain H, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|I Chain I, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|W Chain W, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
Length = 226
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 54 DYVALYVKDGQIHYSFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAE 113
DY+ L++ G+I FN G+ +A+ + +I DG++H V F+R + L++D V E
Sbjct: 91 DYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIE 150
Query: 114 GESKGSSKTLNIF 126
G + L IF
Sbjct: 151 RYPAG--RQLTIF 161
>pdb|3BIW|E Chain E, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|F Chain F, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|G Chain G, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|H Chain H, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
Length = 243
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 54 DYVALYVKDGQIHYSFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAE 113
DY+ L++ G+I FN G+ +A+ + +I DG++H V F+R + L++D V E
Sbjct: 105 DYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIE 164
Query: 114 GESKGSSKTLNIF 126
G + L IF
Sbjct: 165 RYPAG--RQLTIF 175
>pdb|3BOD|A Chain A, Structure Of Mouse Beta-Neurexin 1
Length = 178
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 54 DYVALYVKDGQIHYSFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAE 113
DY+ L++ G+I FN G+ +A+ + +I DG++H V F+R + L++D V E
Sbjct: 57 DYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIE 116
Query: 114 GESKGSSKTLNIF 126
G + L IF
Sbjct: 117 RYPAG--RQLTIF 127
>pdb|3B3Q|E Chain E, Crystal Structure Of A Synaptic Adhesion Complex
pdb|3B3Q|F Chain F, Crystal Structure Of A Synaptic Adhesion Complex
Length = 197
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 54 DYVALYVKDGQIHYSFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAE 113
DY+ L++ G+I FN G+ +A+ + +I DG++H V F+R + L++D V E
Sbjct: 65 DYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIE 124
Query: 114 GESKGSSKTLNIF 126
G + L IF
Sbjct: 125 RYPAG--RQLTIF 135
>pdb|1C4R|A Chain A, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|B Chain B, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|C Chain C, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|D Chain D, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|E Chain E, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|F Chain F, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|G Chain G, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|H Chain H, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
Length = 182
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 54 DYVALYVKDGQIHYSFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAE 113
DY+ L++ G+I FN G+ +A+ + +I DG++H V F+R + L++D V E
Sbjct: 57 DYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIE 116
Query: 114 GESKGSSKTLNIF 126
G + L IF
Sbjct: 117 RYPAG--RQLTIF 127
>pdb|2WQZ|C Chain C, Crystal Structure Of Synaptic Protein Neuroligin-4 In
Complex With Neurexin-beta 1: Alternative Refinement
pdb|2WQZ|D Chain D, Crystal Structure Of Synaptic Protein Neuroligin-4 In
Complex With Neurexin-beta 1: Alternative Refinement
pdb|2XB6|C Chain C, Revisited Crystal Structure Of Neurexin1beta-neuroligin4
Complex
pdb|2XB6|D Chain D, Revisited Crystal Structure Of Neurexin1beta-neuroligin4
Complex
Length = 179
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 54 DYVALYVKDGQIHYSFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAE 113
DY+ L++ G+I FN G+ +A+ + +I DG++H V F+R + L++D V E
Sbjct: 58 DYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIE 117
Query: 114 GESKGSSKTLNIF 126
G + L IF
Sbjct: 118 RYPAG--RQLTIF 128
>pdb|3VKF|C Chain C, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
pdb|3VKF|D Chain D, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
Length = 181
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 54 DYVALYVKDGQIHYSFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAE 113
DY+ L++ G+I FN G+ +A+ + +I DG++H V F+R + L++D V E
Sbjct: 56 DYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIE 115
Query: 114 GESKGSSKTLNIF 126
G + L IF
Sbjct: 116 RYPAG--RQLTIF 126
>pdb|3MW2|A Chain A, Crystal Structure Of Beta-Neurexin 1 With The Splice
Insert 4
pdb|3MW2|B Chain B, Crystal Structure Of Beta-Neurexin 1 With The Splice
Insert 4
Length = 207
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%)
Query: 54 DYVALYVKDGQIHYSFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAE 113
DY+ L++ G+I FN G+ +A+ + +I DG++H V F+R + L++D V E
Sbjct: 56 DYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIE 115
>pdb|2R1B|A Chain A, Crystal Structure Of Rat Neurexin 1beta With A Splice
Insert At Ss#4
pdb|2R1B|B Chain B, Crystal Structure Of Rat Neurexin 1beta With A Splice
Insert At Ss#4
Length = 220
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%)
Query: 54 DYVALYVKDGQIHYSFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAE 113
DY+ L++ G+I FN G+ +A+ + +I DG++H V F+R + L++D V E
Sbjct: 63 DYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIE 122
>pdb|1D2S|A Chain A, Crystal Structure Of The N-Terminal Laminin G-Like Domain
Of Shbg In Complex With Dihydrotestosterone
Length = 170
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 15/138 (10%)
Query: 28 FDFSIDIKTTS-------EQDGIIFYVADVKHIDYVALYVKDGQIHYSFNCGSGPMALSS 80
FD + KT+S + +G+IFY D+ L ++DG+ + + + +
Sbjct: 20 FDLTKITKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGA 79
Query: 81 GDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFGPFYLGGVPLNTST 140
G +L DG WH VE + S L++DG+ V + I LGG+ S
Sbjct: 80 GPRLD-DGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGHPIMRI----ALGGLLFPASN 134
Query: 141 LVRGNLGLNDTFVGCLRN 158
L L L GCLR
Sbjct: 135 L---RLPLVPALDGCLRR 149
>pdb|2H0B|A Chain A, Crystal Structure Of The Second LnsLG DOMAIN FROM NEUREXIN
1 ALPHA
pdb|2H0B|B Chain B, Crystal Structure Of The Second LnsLG DOMAIN FROM NEUREXIN
1 ALPHA
pdb|2H0B|C Chain C, Crystal Structure Of The Second LnsLG DOMAIN FROM NEUREXIN
1 ALPHA
pdb|2H0B|D Chain D, Crystal Structure Of The Second LnsLG DOMAIN FROM NEUREXIN
1 ALPHA
Length = 184
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 7/133 (5%)
Query: 37 TSEQDGIIFYVADVKHIDYVALYVKDGQIHYSFNCGSGPMA--LSSGDKLILDGEWHTVE 94
T +++G+ + K DYV L +K+G + N GSG + + D WH V+
Sbjct: 38 TLQRNGLXLHTG--KSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVK 95
Query: 95 FSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFGPFYLGGVPLNTSTLVRGNLGLNDTFVG 154
+R + +DG + G ++ L FY+GG P ST +++ F G
Sbjct: 96 VTRNLRQVTISVDGILTTTGYTQEDYTXLGSDDFFYVGGSP---STADLPGSPVSNNFXG 152
Query: 155 CLRNLKSNNKLVQ 167
CL+ + N V+
Sbjct: 153 CLKEVVYKNNDVR 165
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Query: 208 ELKMDVKPRNISGLLLSVHSKKDYFILQMIDGSVKATVDNGKGPISAIYTPSDPYFFCDG 267
E+ + K +GL L DY L + +G+V ++ G G A+ P + F D
Sbjct: 31 EITLSFKTLQRNGLXLHTGKSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGK-FNDN 89
Query: 268 QWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSETDTNNAVFIGGHP 315
WH + + ++++VD + T G + +++ ++GG P
Sbjct: 90 AWHDVKVTRNLRQVTISVDGILT-TTGYTQEDYTXLGSDDFFYVGGSP 136
>pdb|3MW4|A Chain A, Crystal Structure Of Beta-Neurexin 3 Without The Splice
Insert 4
pdb|3MW4|B Chain B, Crystal Structure Of Beta-Neurexin 3 Without The Splice
Insert 4
pdb|3MW4|C Chain C, Crystal Structure Of Beta-Neurexin 3 Without The Splice
Insert 4
Length = 178
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 36 TTSEQDGIIFYVADVKHI-DYVALYVKDGQIHYSFNCGSGPMALSSGDKLILDGEWHTVE 94
+T+ +DGI+ + + D++ L+++ G+I FN G+ +++ + DG++H V
Sbjct: 38 STTVKDGILVRIDSAPGLGDFLQLHIEQGKIGVVFNIGTVDISIKEERTPVNDGKYHVVR 97
Query: 95 FSRQQLSGKLKIDGQVVAEGESKGSSKTL 123
F+R + L++D V E G T+
Sbjct: 98 FTRNGANATLQVDNWPVNEHYPTGRQLTI 126
>pdb|1F5F|A Chain A, Crystal Structure Of The N-Terminal G-Domain Of Shbg In
Complex With Zinc
Length = 205
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 71/172 (41%), Gaps = 16/172 (9%)
Query: 28 FDFSIDIKTTS-------EQDGIIFYVADVKHIDYVALYVKDGQIHYSFNCGSGPMALSS 80
FD + KT+S + +G+IFY D+ L ++DG+ + + + +
Sbjct: 32 FDLTKITKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGA 91
Query: 81 GDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKG---SSKTLNIFGPFYLGGVPLN 137
G +L DG WH VE + S L++DG+ V +SK I LGG+
Sbjct: 92 GPRLD-DGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSKRHPIMR-IALGGLLFP 149
Query: 138 TSTLVRGNLGLNDTFVGCLRNLKSNNKLVQ-DKHTSSGVIPCSDKTESGVFF 188
S L L L GCLR +K + + + C ++ G+F
Sbjct: 150 ASNL---RLPLVPALDGCLRRDSWLDKQAEISASAPTSLRSCDVESNPGIFL 198
>pdb|3PVE|A Chain A, Crystal Structure Of The G2 Domain Of Agrin From Mus
Musculus
pdb|3PVE|B Chain B, Crystal Structure Of The G2 Domain Of Agrin From Mus
Musculus
Length = 189
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 54 DYVALYVKDGQIHYSFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKI-DGQVVA 112
D+V+L + + + + ++ G G + S + + L G W V R G L++ DG V
Sbjct: 63 DFVSLALHNRHLEFRYDLGKGAAIIRSKEPIAL-GTWVRVFLERNGRKGALQVGDGPRVL 121
Query: 113 EGESKGSSKTLNIFGPFYLGGVPLNTSTLVRGNLGLNDTFVGCLR--NLKSNNKLVQD 168
GES LN+ P Y+GG P + S L RG + F G ++ +L+ + L Q+
Sbjct: 122 -GESPVPHTMLNLKEPLYVGGAP-DFSKLARGA-AVASGFDGAIQLVSLRGHQLLTQE 176
>pdb|3BOP|A Chain A, Structure Of Mouse Beta-neurexin 2d4
pdb|3BOP|B Chain B, Structure Of Mouse Beta-neurexin 2d4
pdb|3BOP|C Chain C, Structure Of Mouse Beta-neurexin 2d4
Length = 175
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 54 DYVALYVKDGQIHYSFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAE 113
DY+ L++ G + FN G+ + + + ++ DG++H V F+R + L++D V E
Sbjct: 54 DYLQLHIDQGTVGVIFNVGTDDITIDEPNAIVSDGKYHVVRFTRSGGNATLQVDSWPVNE 113
Query: 114 GESKGSSKTLNIF 126
G + L IF
Sbjct: 114 RYPAG--RQLTIF 124
>pdb|1LHN|A Chain A, Crystal Structure Of The N-Terminal Lg-Domain Of Shbg In
Complex With 5alpha-Androstane-3beta,17alpha-Diol
pdb|1LHO|A Chain A, Crystal Structure Of The N-terminal Lg-domain Of Shbg In
Complex With 5alpha-androstane-3beta,17beta-diol
pdb|1LHU|A Chain A, Crystal Structure Of The N-Terminal Lg-Domain Of Shbg In
Complex With Estradiol
pdb|1LHV|A Chain A, Crystal Structure Of The N-terminal Lg-domain Of Shbg In
Complex With Norgestrel
pdb|1LHW|A Chain A, Crystal Structure Of The N-Terminal Lg-Domain Of Shbg In
Complex With 2-Methoxyestradiol
Length = 189
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 60/141 (42%), Gaps = 15/141 (10%)
Query: 28 FDFSIDIKTTS-------EQDGIIFYVADVKHIDYVALYVKDGQIHYSFNCGSGPMALSS 80
FD + KT+S + +G+IFY D+ L ++DG+ + + + +
Sbjct: 32 FDLTKITKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGA 91
Query: 81 GDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKG---SSKTLNIFGPFYLGGVPLN 137
G +L DG WH VE + S L++DG+ V +SK I LGG+
Sbjct: 92 GPRLD-DGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSKRHPIMR-IALGGLLFP 149
Query: 138 TSTLVRGNLGLNDTFVGCLRN 158
S L L L GCLR
Sbjct: 150 ASNL---RLPLVPALDGCLRR 167
>pdb|1KDK|A Chain A, The Structure Of The N-Terminal Lg Domain Of Shbg In
Crystals Soaked With Edta
pdb|1KDM|A Chain A, The Crystal Structure Of The Human Sex Hormone-Binding
Globulin (Tetragonal Crystal Form)
Length = 177
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 60/141 (42%), Gaps = 15/141 (10%)
Query: 28 FDFSIDIKTTS-------EQDGIIFYVADVKHIDYVALYVKDGQIHYSFNCGSGPMALSS 80
FD + KT+S + +G+IFY D+ L ++DG+ + + + +
Sbjct: 21 FDLTKITKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGA 80
Query: 81 GDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKG---SSKTLNIFGPFYLGGVPLN 137
G +L DG WH VE + S L++DG+ V +SK I LGG+
Sbjct: 81 GPRLD-DGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSKRHPIMR-IALGGLLFP 138
Query: 138 TSTLVRGNLGLNDTFVGCLRN 158
S L L L GCLR
Sbjct: 139 ASNL---RLPLVPALDGCLRR 156
>pdb|3MW3|A Chain A, Crystal Structure Of Beta-Neurexin 2 With The Splice
Insert 4
Length = 208
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%)
Query: 54 DYVALYVKDGQIHYSFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAE 113
DY+ L++ G + FN G+ + + + ++ DG++H V F+R + L++D V E
Sbjct: 57 DYLQLHIDQGTVGVIFNVGTDDITIDEPNAIVSDGKYHVVRFTRSGGNATLQVDSWPVNE 116
>pdb|1RF4|A Chain A, Structural Studies Of Streptococcus Pneumoniae Epsp
Synthase, Tetrahedral Intermediate Bound State
pdb|1RF4|B Chain B, Structural Studies Of Streptococcus Pneumoniae Epsp
Synthase, Tetrahedral Intermediate Bound State
pdb|1RF4|C Chain C, Structural Studies Of Streptococcus Pneumoniae Epsp
Synthase, Tetrahedral Intermediate Bound State
pdb|1RF4|D Chain D, Structural Studies Of Streptococcus Pneumoniae Epsp
Synthase, Tetrahedral Intermediate Bound State
pdb|1RF5|A Chain A, Structural Studies Of Streptococcus Pneumoniae Epsp
Synthase In Unliganded State
pdb|1RF5|B Chain B, Structural Studies Of Streptococcus Pneumoniae Epsp
Synthase In Unliganded State
pdb|1RF5|C Chain C, Structural Studies Of Streptococcus Pneumoniae Epsp
Synthase In Unliganded State
pdb|1RF5|D Chain D, Structural Studies Of Streptococcus Pneumoniae Epsp
Synthase In Unliganded State
pdb|1RF6|A Chain A, Structural Studies Of Streptococcus Pneumoniae Epsp
Synthase In S3p-Glp Bound State
pdb|1RF6|B Chain B, Structural Studies Of Streptococcus Pneumoniae Epsp
Synthase In S3p-Glp Bound State
pdb|1RF6|C Chain C, Structural Studies Of Streptococcus Pneumoniae Epsp
Synthase In S3p-Glp Bound State
pdb|1RF6|D Chain D, Structural Studies Of Streptococcus Pneumoniae Epsp
Synthase In S3p-Glp Bound State
Length = 427
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 19/115 (16%)
Query: 65 IHYSFNCGSGPM-------ALSS-GDKLILDGEW---HTVEFSRQQLSGKLKIDGQ-VVA 112
IHY S + AL + G+ +I++ E+ HT E QQ G L +DG+ +
Sbjct: 158 IHYELPIASAQVKSALMFAALQAKGESVIIEKEYTRNHT-EDMLQQFGGHLSVDGKKITV 216
Query: 113 EGESKGSSKTLNIFG-----PFYL-GGVPLNTSTLVRGNLGLNDTFVGCLRNLKS 161
+G K + + + + G F+L G+ S LV N+G+N+T G + +++
Sbjct: 217 QGPQKLTGQKVVVPGDISSAAFWLVAGLIAPNSRLVLQNVGINETRTGIIDVIRA 271
>pdb|3FTJ|A Chain A, Crystal Structure Of The Periplasmic Region Of Macb From
Actinobacillus Actinomycetemcomitans
Length = 226
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 213 VKPRNISGLLLSVHSKKDYFILQMIDGSVKATVDNGKGPI 252
V ++++ LL S+H KKD+FI M ++K T++N G +
Sbjct: 188 VAEKSLTELLKSLHGKKDFFI--MNSDTIKQTIENTTGTM 225
>pdb|3TOV|A Chain A, The Crystal Structure Of The Glycosyl Transferase Family 9
From Veillonella Parvula Dsm 2008
pdb|3TOV|B Chain B, The Crystal Structure Of The Glycosyl Transferase Family 9
From Veillonella Parvula Dsm 2008
Length = 349
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 251 PISAIYTPSDPYFFCDGQWHTIV 273
PI A+Y PS+P+F+ Q H IV
Sbjct: 282 PIVALYGPSNPFFYGPYQAHAIV 304
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,806,300
Number of Sequences: 62578
Number of extensions: 462123
Number of successful extensions: 1165
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1045
Number of HSP's gapped (non-prelim): 65
length of query: 348
length of database: 14,973,337
effective HSP length: 100
effective length of query: 248
effective length of database: 8,715,537
effective search space: 2161453176
effective search space used: 2161453176
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)