RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12396
(348 letters)
>gnl|CDD|214598 smart00282, LamG, Laminin G domain.
Length = 132
Score = 124 bits (313), Expect = 4e-35
Identities = 52/136 (38%), Positives = 71/136 (52%), Gaps = 4/136 (2%)
Query: 29 DFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHYSFNCGSGPMALSSGDKLILDG 88
S +TTS +G++ Y DY+AL ++DG++ ++ GSGP L+S + DG
Sbjct: 1 SISFSFRTTSP-NGLLLYAGSKGGGDYLALELRDGRLVLRYDLGSGPARLTSDPTPLNDG 59
Query: 89 EWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFGPFYLGGVPLNTSTLVRGNLGL 148
+WH V R S L +DG GES G LN+ GP YLGG+P L L +
Sbjct: 60 QWHRVAVERNGRSVTLSVDGGNRVSGESPGGLTILNLDGPLYLGGLP---EDLKLPPLPV 116
Query: 149 NDTFVGCLRNLKSNNK 164
F GC+RNLK N K
Sbjct: 117 TPGFRGCIRNLKVNGK 132
Score = 76.2 bits (188), Expect = 4e-17
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 6/117 (5%)
Query: 208 ELKMDVKPRNISGLLLSVHSK--KDYFILQMIDGSVKATVDNGKGPISAIYTPSDPYFFC 265
+ + + +GLLL SK DY L++ DG + D G GP SDP
Sbjct: 1 SISFSFRTTSPNGLLLYAGSKGGGDYLALELRDGRLVLRYDLGSGPARLT---SDPTPLN 57
Query: 266 DGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSETDTNNAVFIGGHPFLSLSSK 322
DGQWH + + ++++VD G P G + + + +++GG P
Sbjct: 58 DGQWHRVAVERNGRSVTLSVDG-GNRVSGESPGGLTILNLDGPLYLGGLPEDLKLPP 113
>gnl|CDD|238058 cd00110, LamG, Laminin G domain; Laminin G-like domains are usually
Ca++ mediated receptors that can have binding sites for
steroids, beta1 integrins, heparin, sulfatides,
fibulin-1, and alpha-dystroglycans. Proteins that
contain LamG domains serve a variety of purposes
including signal transduction via cell-surface steroid
receptors, adhesion, migration and differentiation
through mediation of cell adhesion molecules.
Length = 151
Score = 120 bits (302), Expect = 3e-33
Identities = 54/153 (35%), Positives = 82/153 (53%), Gaps = 6/153 (3%)
Query: 10 SKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHYSF 69
S SS + PT + + S +TTS +G++ Y D++AL ++DG++ +
Sbjct: 5 SGSSYVRLPT-LPAPRTRLSISFSFRTTSP-NGLLLYAGSQNGGDFLALELEDGRLVLRY 62
Query: 70 NCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFGPF 129
+ GSG + LSS + DG+WH+V R S L +DG+ V E S G S LN+ GP
Sbjct: 63 DLGSGSLVLSS-KTPLNDGQWHSVSVERNGRSVTLSVDGERVVESGSPGGSALLNLDGPL 121
Query: 130 YLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSN 162
YLGG+P + + + FVGC+R+LK N
Sbjct: 122 YLGGLPEDLKSPGLPV---SPGFVGCIRDLKVN 151
Score = 79.0 bits (195), Expect = 8e-18
Identities = 30/139 (21%), Positives = 60/139 (43%), Gaps = 7/139 (5%)
Query: 186 VFFYNSGGYVKGVEQFRVGREMELKMDVKPRNISGLLLSVHSK--KDYFILQMIDGSVKA 243
++ YV+ + + + + +GLLL S+ D+ L++ DG +
Sbjct: 1 GVSFSGSSYVRLPTLPAPRTRLSISFSFRTTSPNGLLLYAGSQNGGDFLALELEDGRLVL 60
Query: 244 TVDNGKGPISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSET 303
D G G + + + P DGQWH++ + ++++VD + G P GS+
Sbjct: 61 RYDLGSGSL--VLSSKTPL--NDGQWHSVSVERNGRSVTLSVDGERVVESGS-PGGSALL 115
Query: 304 DTNNAVFIGGHPFLSLSSK 322
+ + +++GG P S
Sbjct: 116 NLDGPLYLGGLPEDLKSPG 134
>gnl|CDD|216930 pfam02210, Laminin_G_2, Laminin G domain. This family includes the
Thrombospondin N-terminal-like domain, a Laminin G
subfamily.
Length = 124
Score = 108 bits (271), Expect = 5e-29
Identities = 43/124 (34%), Positives = 69/124 (55%), Gaps = 3/124 (2%)
Query: 37 TSEQDGIIFYVADVKHIDYVALYVKDGQIHYSFNCGSGPMALSSGDKLILDGEWHTVEFS 96
T++ +G++ Y +D++AL ++DG++ ++ GSG L K + DG+WH V S
Sbjct: 3 TTQPNGLLLYAGGEDGLDFLALELEDGRLVLRYDLGSGGSVLLLSGKKLNDGQWHRVSVS 62
Query: 97 RQQLSGKLKIDGQVVAEGESKGSSKTLNIFGPFYLGGVPLNTSTLVRGNLGLNDTFVGCL 156
R S L +DG V GSS LN+ GP YLGG+P ++ + + FVGC+
Sbjct: 63 RDGRSLTLSVDGGTVVSEALPGSSSILNLNGPLYLGGLPEDSGLSLLPV---TEGFVGCI 119
Query: 157 RNLK 160
RN++
Sbjct: 120 RNVR 123
Score = 69.4 bits (170), Expect = 1e-14
Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 6/114 (5%)
Query: 213 VKPRNISGLLLSVHSK--KDYFILQMIDGSVKATVDNGKGPISAIYTPSDPYFFCDGQWH 270
+ +GLLL + D+ L++ DG + D G G + + DGQWH
Sbjct: 1 FRTTQPNGLLLYAGGEDGLDFLALELEDGRLVLRYDLGSGGSVLLLSG---KKLNDGQWH 57
Query: 271 TIVAIKTKNVISVAVDSMTTDKPGLGPPGSSETDTNNAVFIGGHPFLSLSSKKS 324
+ + ++++VD T P SS + N +++GG P S S
Sbjct: 58 RVSVSRDGRSLTLSVDGGTVVS-EALPGSSSILNLNGPLYLGGLPEDSGLSLLP 110
>gnl|CDD|215681 pfam00054, Laminin_G_1, Laminin G domain.
Length = 131
Score = 93.5 bits (233), Expect = 2e-23
Identities = 50/132 (37%), Positives = 78/132 (59%), Gaps = 4/132 (3%)
Query: 37 TSEQDGIIFYVADVKHIDYVALYVKDGQIHYSFNCGSGPMALSSGDKLILDGEWHTVEFS 96
T+E G++ Y D++AL ++DG++ S++ GSG + SGDKL DG+WH+VE
Sbjct: 3 TTEPSGLLLYNGTQTERDFLALELRDGRLEVSYDLGSGAAVVRSGDKLN-DGKWHSVELE 61
Query: 97 RQQLSGKLKIDGQVVAEGESKGSSKT-LNIFGPFYLGGVPLNTSTLVRGNLGLNDTFVGC 155
R SG L +DG+ GES + T L++ GP Y+GG+P L R L ++ +F GC
Sbjct: 62 RNGRSGTLSVDGEARVTGESPLGATTDLDVDGPLYVGGLPSLAVKLRR--LAISPSFDGC 119
Query: 156 LRNLKSNNKLVQ 167
+R++ N K +
Sbjct: 120 IRDVIVNGKPLD 131
Score = 55.8 bits (135), Expect = 1e-09
Identities = 25/107 (23%), Positives = 52/107 (48%), Gaps = 12/107 (11%)
Query: 219 SGLLLSVHSK--KDYFILQMIDGSVKATVDNGKGPISAIYTPSDPYFFCDGQWHTIVAIK 276
SGLLL ++ +D+ L++ DG ++ + D G G DG+WH++ +
Sbjct: 7 SGLLLYNGTQTERDFLALELRDGRLEVSYDLGSGAAVVRSGDK----LNDGKWHSVELER 62
Query: 277 TKNVISVAVD---SMTTDKPGLGPPGSSETDTNNAVFIGGHPFLSLS 320
+++VD +T + P +++ D + +++GG P L++
Sbjct: 63 NGRSGTLSVDGEARVTGESPL---GATTDLDVDGPLYVGGLPSLAVK 106
>gnl|CDD|222092 pfam13385, Laminin_G_3, Concanavalin A-like lectin/glucanases
superfamily. This domain belongs to the Concanavalin
A-like lectin/glucanases superfamily.
Length = 156
Score = 35.8 bits (83), Expect = 0.011
Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 14/132 (10%)
Query: 30 FSIDIKTTSEQDGIIFYVADVKHIDYVALYV-KDGQIHYSFNCGSGPMALSSGDKLILDG 88
S +K S G + L + G++ ++ G G A + + G
Sbjct: 26 VSAWVKPDSLPGGTRLLIGGSGS-GGFGLGLDGSGKLRFTVGGGGGGAATVTSGAPLPPG 84
Query: 89 EWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFGPFYLGGVPLNTSTLVRGNLGL 148
+WH V + + KL ++G +V G+ T GP Y+G + G
Sbjct: 85 QWHHVAVTYDGGTLKLYVNGVLVGSTTLSGTI-TSGTTGPLYIG-----------ASNGG 132
Query: 149 NDTFVGCLRNLK 160
+ F G + ++
Sbjct: 133 DRYFNGAIDEVR 144
Score = 27.4 bits (61), Expect = 7.0
Identities = 27/113 (23%), Positives = 39/113 (34%), Gaps = 18/113 (15%)
Query: 211 MDVKPRNISG--LLLSVHSKKDYFILQM-IDGSVKATVDNGKGPISAIYTPSDPYFFCDG 267
VKP ++ G LL S F L + G ++ TV G G T + G
Sbjct: 28 AWVKPDSLPGGTRLLIGGSGSGGFGLGLDGSGKLRFTVGGGGG---GAATVTSGAPLPPG 84
Query: 268 QWHTIVAIKTKNVIS-----VAVDSMTTDKPGLGPPGSSETDTNNAVFIGGHP 315
QWH + + V V S T G+ + T ++IG
Sbjct: 85 QWHHVAVTYDGGTLKLYVNGVLVGSTTL-------SGTITSGTTGPLYIGASN 130
>gnl|CDD|130811 TIGR01750, fabZ, beta-hydroxyacyl-[acyl carrier protein]
dehydratase FabZ. This enzyme, FabZ, shows overlapping
substrate specificity with FabA with regard to chain
length in fatty acid biosynthesis. FabZ works
preferentially on shorter chains and is often designated
(3R)-hydroxymyristoyl-[acyl carrier protein]
dehydratase, although its actual specificity is broader.
Unlike FabA, FabZ does not function as an isomerase and
cannot initiate unsaturated fatty acid biosynthesis.
However, only FabZ can act during the elongation of
unsaturated fatty acid chains [Fatty acid and
phospholipid metabolism, Biosynthesis].
Length = 140
Score = 31.1 bits (71), Expect = 0.32
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
Query: 81 GDKLILDGEWHTVEFSRQQLS---GKLKIDGQVVAEGE 115
GD+LIL E R+++ G+ +DG+VVAE E
Sbjct: 101 GDQLILHAE---FLKKRRKIGKFKGEATVDGKVVAEAE 135
>gnl|CDD|219029 pfam06439, DUF1080, Domain of Unknown Function (DUF1080). This
family has structural similarity to an endo-1,3-1,4-beta
glucanase belonging to glycoside hydrolase family 16.
However, the structure surrounding the active site
differs from that of the endo-1,3-1,4-beta glucanase.
Length = 183
Score = 31.5 bits (72), Expect = 0.42
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 208 ELKMDVK--PRNISGLLLSVHSKKDYFI-----LQMIDGSVKATVDNGKGPISAIYTPSD 260
EL ++ K P SG+ L + +Q++D ++ G G + PS
Sbjct: 55 ELHLEFKITPGGNSGVFLRSQPPEGQDFVKGYEVQILDSGGDPYLNRGTGSLYDEIAPSV 114
Query: 261 PYFFCDGQWHTIVAIKTKNVISVAVD 286
F G+W+T I N I+V ++
Sbjct: 115 NAAFPPGEWNTYEIIVKGNRITVWLN 140
>gnl|CDD|234568 PRK00006, fabZ, (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed.
Length = 147
Score = 30.5 bits (70), Expect = 0.58
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 10/40 (25%)
Query: 81 GDKLILDGEWHTVEFSRQ-----QLSGKLKIDGQVVAEGE 115
GD+LIL VE +Q + G +DG++VAE E
Sbjct: 105 GDQLIL-----EVELLKQRRGIWKFKGVATVDGKLVAEAE 139
>gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase.
Length = 261
Score = 29.9 bits (67), Expect = 2.0
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 71 CGSGPMALSSGDKLILDGEWHTVEFSRQQL 100
CGSG +A +K+ DG+ ++FS +QL
Sbjct: 82 CGSGDLAFLLSEKVGSDGKVMGLDFSSEQL 111
>gnl|CDD|206757 cd10020, 14-3-3_epsilon, 14-3-3 epsilon, an isoform of 14-3-3
protein. 14-3-3 protein epsilon isoform (isoform (also
known as tyrosine 3-monooxygenase/ tryptophan
5-monooxygenase activation protein, epsilon polypeptide)
is encoded by the YWHAE gene in humans and is involved
in cancer cell survival and growth. It interacts with
CDC25 phosphatases, RAF1 and IRS1 proteins, suggesting
its role in diverse biochemical activities related to
signal transduction, such as cell division and
regulation of insulin sensitivity. Overexpression of
14-3-3 epsilon in primary hepatocellular carcinoma (HCC)
tissues predicts a high risk of extrahepatic metastasis
and worse survival, and is a potential therapeutic
target. It has also been implicated in the pathogenesis
of small cell lung cancer. 14-3-3 epsilon overexpression
protects colorectal cancer and endothelial cells from
oxidative stress-induced apoptosis, while its
suppression by non-steroidal anti-inflammatory drugs
induces cancer and endothelial cell death. Cellular
levels of 14-3-3 epsilon could possibly serve as an
important regulator of cell survival in response to
oxidative stress and other death signals. 14-3-3 domains
are an essential part of 14-3-3 proteins, a ubiquitous
class of regulatory, phosphoserine/threonine-binding
proteins found in all eukaryotic cells, including yeast,
protozoa and mammalian cells.
Length = 230
Score = 28.5 bits (63), Expect = 4.1
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 156 LRNLKSNNKLVQDKHTSSGVIPCSDKTESGVFFYN-SGGYVKGVEQFRVGRE 206
L+++ ++ V DKH +IP ++ ES VF+Y G Y + + +F G +
Sbjct: 90 LKDICNDILDVLDKH----LIPAANSGESKVFYYKMKGDYHRYLAEFATGND 137
>gnl|CDD|215532 PLN02982, PLN02982, galactinol-raffinose
galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl
compounds.
Length = 865
Score = 29.0 bits (65), Expect = 4.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 189 YNSGGYVKGVEQFRVGREMELKMDVK 214
+NSGG ++ +E G E +K+ VK
Sbjct: 787 FNSGGTIQEMEYGESGGECSVKVKVK 812
>gnl|CDD|215793 pfam00213, OSCP, ATP synthase delta (OSCP) subunit. The ATP D
subunit from E. coli is the same as the OSCP subunit
which is this family. The ATP D subunit from metazoa are
found in family pfam00401.
Length = 171
Score = 27.9 bits (63), Expect = 5.5
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 7/41 (17%)
Query: 202 RVGREMELKMDVKPRNISGLLLSVHSKKDYFILQMIDGSVK 242
+ G++++L+ V P I G+++ V K +IDGSV+
Sbjct: 128 KTGKKVKLETKVDPSLIGGVVVRVGDK-------VIDGSVR 161
>gnl|CDD|238615 cd01288, FabZ, FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein
(ACP) dehydratase that primarily catalyzes the
dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP,
the third step in the elongation phase of the bacterial/
plastid, type II, fatty-acid biosynthesis pathway.
Length = 131
Score = 27.5 bits (62), Expect = 6.3
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 10/40 (25%)
Query: 81 GDKLILDGEWHTVEFSRQQLS-----GKLKIDGQVVAEGE 115
GD+LIL VE + + GK +DG++VAE E
Sbjct: 91 GDQLIL-----EVELLKLRRGIGKFKGKAYVDGKLVAEAE 125
>gnl|CDD|234472 TIGR04105, FeFe_hydrog_B1, [FeFe] hydrogenase, group B1/B3. See
PMID:20395274 for descriptions of different groups.
Length = 462
Score = 27.9 bits (63), Expect = 8.8
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 188 FYNSGGYVKGVEQFRVGREMELKMDVKPRNISGL 221
F SGG V++ +E ++VKP +GL
Sbjct: 392 FAVSGGVAAAVKE--AIKEKGPDVEVKPVKCNGL 423
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.136 0.399
Gapped
Lambda K H
0.267 0.0715 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,092,533
Number of extensions: 1604340
Number of successful extensions: 1214
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1198
Number of HSP's successfully gapped: 24
Length of query: 348
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 250
Effective length of database: 6,590,910
Effective search space: 1647727500
Effective search space used: 1647727500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.5 bits)