RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12396
(348 letters)
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding
protein; 1.9A {Mus musculus}
Length = 383
Score = 252 bits (646), Expect = 8e-82
Identities = 88/311 (28%), Positives = 158/311 (50%), Gaps = 8/311 (2%)
Query: 8 GTSKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHY 67
G S++S + P + + + I+T + G+I+YVA +DY L +++G++H+
Sbjct: 25 GLSQNSHLVLPLQQSDVRKRLQVQLSIRTFAS-SGLIYYVAHQNQMDYATLQLQEGRLHF 83
Query: 68 SFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFG 127
F+ G G +S L+ DG+WHTV+ + + +DGQ G + TL++
Sbjct: 84 MFDLGKGRTKVSHP-ALLSDGKWHTVKTEYIKRKAFMTVDGQESPSVTVVGKATTLDVER 142
Query: 128 PFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNKLV--QDKHTSSGVIPCSDKTESG 185
YLGG+P + R + + C+ + N + + ++S V C + G
Sbjct: 143 KLYLGGLP--SHYRARNIGTITHSIPACIGEIMVNGQQLDKDRPLSASAVDRCYVVAQEG 200
Query: 186 VFFYNSGGYVKGVEQFRVGREMELKMDVKPRNISGLLLSVHSKK-DYFILQMIDGSVKAT 244
FF SG E ++V ++++ ++ + + +G+LL + S K D L+++DG V
Sbjct: 201 TFFEGSGYAALVKEGYKVRLDLQITLEFRTTSKNGVLLGISSAKVDAIGLEIVDGKVLFH 260
Query: 245 VDNGKGPISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSETD 304
V+NG G I+A Y P CDG+WHT+ A K+K+ I + VD + + S+ D
Sbjct: 261 VNNGAGRITATYQPRAARALCDGKWHTLQAHKSKHRIVLTVDG-NSVRAESPHTHSTSAD 319
Query: 305 TNNAVFIGGHP 315
TN+ +++GG+P
Sbjct: 320 TNDPIYVGGYP 330
Score = 106 bits (267), Expect = 2e-26
Identities = 37/179 (20%), Positives = 76/179 (42%), Gaps = 14/179 (7%)
Query: 10 SKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHYSF 69
S + + +++ +T + ++G++ ++ K D + L + DG++ +
Sbjct: 204 EGSGYAALVKEGYKVRLDLQITLEFRT-TSKNGVLLGISSAKV-DAIGLEIVDGKVLFHV 261
Query: 70 NCGSGPMALSSGDKLIL---DGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIF 126
N G+G + + + DG+WHT++ + + L +DG V S + +
Sbjct: 262 NNGAGRITATYQPRAARALCDGKWHTLQAHKSKHRIVLTVDGNSVRAESPHTHSTSADTN 321
Query: 127 GPFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNKL------VQDKHTSSGVIPCS 179
P Y+GG P + + +L +F GC+RNL+ + + GV P S
Sbjct: 322 DPIYVGGYPAHIK---QNSLSSRASFRGCVRNLRLSRGSQVQSLDLSRAFDLQGVFPHS 377
Score = 72.7 bits (178), Expect = 2e-14
Identities = 28/148 (18%), Positives = 61/148 (41%), Gaps = 8/148 (5%)
Query: 183 ESGVFFYNSGGYVK-GVEQFRVGREMELKMDVKPRNISGLLL--SVHSKKDYFILQMIDG 239
+ F + ++ ++Q V + +++++ ++ SGL+ + ++ DY LQ+ +G
Sbjct: 20 GAHQFGLSQNSHLVLPLQQSDVRKRLQVQLSIRTFASSGLIYYVAHQNQMDYATLQLQEG 79
Query: 240 SVKATVDNGKGPISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPG 299
+ D GKG + P+ DG+WHT+ K + VD +
Sbjct: 80 RLHFMFDLGKGRTK-VSHPAL---LSDGKWHTVKTEYIKRKAFMTVDGQESPS-VTVVGK 134
Query: 300 SSETDTNNAVFIGGHPFLSLSSKKSGPR 327
++ D +++GG P +
Sbjct: 135 ATTLDVERKLYLGGLPSHYRARNIGTIT 162
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus}
SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Length = 394
Score = 247 bits (632), Expect = 1e-79
Identities = 96/311 (30%), Positives = 161/311 (51%), Gaps = 10/311 (3%)
Query: 8 GTSKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHY 67
G S++S I + KN+ ++++T +E G++FY+A + H D+ + +++G ++
Sbjct: 39 GLSRNSHIAIAFDDTKVKNRLTIELEVRTEAE-SGLLFYMARINHADFATVQLRNGFPYF 97
Query: 68 SFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFG 127
S++ GSG + K+ DG+WH ++ R + G L +D + S + L++ G
Sbjct: 98 SYDLGSGDTSTMIPTKIN-DGQWHKIKIVRVKQEGILYVDDASS-QTISPKKADILDVVG 155
Query: 128 PFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNKLV--QDKHTSSGVIPCSDKTESG 185
Y+GG+P+N +T G + + GC+RNL V +S V C ESG
Sbjct: 156 ILYVGGLPINYTTRRIG--PVTYSLDGCVRNLHMEQAPVDLDQPTSSFHVGTCFANAESG 213
Query: 186 VFFYNSGGYVKGVEQFRVGREMELKMDVKPRNISGLLLSVHSKK-DYFILQMIDGSVKAT 244
+F + G+ K V F+VG ++ ++ + + +G+LL V S+K D ++MID +
Sbjct: 214 TYF-DGTGFAKAVGGFKVGLDLLVEFEFRTTRPTGVLLGVSSQKMDGMGIEMIDEKLMFH 272
Query: 245 VDNGKGPISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSETD 304
VDNG G +AIY P C+GQWH + A K KN + + VD S+ D
Sbjct: 273 VDNGAGRFTAIYDAEIPGHMCNGQWHKVTAKKIKNRLELVVDG-NQVDAQSPNSASTSAD 331
Query: 305 TNNAVFIGGHP 315
TN+ VF+GG P
Sbjct: 332 TNDPVFVGGFP 342
Score = 105 bits (264), Expect = 6e-26
Identities = 32/162 (19%), Positives = 69/162 (42%), Gaps = 8/162 (4%)
Query: 17 YPTITGRFKNKFDFSIDIK-TTSEQDGIIFYVADVKHIDYVALYVKDGQIHYSFNCGSGP 75
+ G FK D ++ + T+ G++ V+ + +D + + + D ++ + + G+G
Sbjct: 221 FAKAVGGFKVGLDLLVEFEFRTTRPTGVLLGVSS-QKMDGMGIEMIDEKLMFHVDNGAGR 279
Query: 76 MALSSGDKL---ILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFGPFYLG 132
++ + +G+WH V + + +L +DG V +S + + P ++G
Sbjct: 280 FTAIYDAEIPGHMCNGQWHKVTAKKIKNRLELVVDGNQVDAQSPNSASTSADTNDPVFVG 339
Query: 133 GVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNKLVQDKHTSSG 174
G P + L N F GC+R+LK + +
Sbjct: 340 GFPGGLNQF---GLTTNIRFRGCIRSLKLTKGTGKPLEVNFA 378
Score = 76.6 bits (188), Expect = 1e-15
Identities = 32/161 (19%), Positives = 65/161 (40%), Gaps = 15/161 (9%)
Query: 177 PCSDKTESGVF-----FYNSG-GYVK-GVEQFRVGREMELKMDVKPRNISGLLL--SVHS 227
PC ++E + F S ++ + +V + ++++V+ SGLL + +
Sbjct: 22 PCVAESEPALLTGSKQFGLSRNSHIAIAFDDTKVKNRLTIELEVRTEAESGLLFYMARIN 81
Query: 228 KKDYFILQMIDGSVKATVDNGKGPISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDS 287
D+ +Q+ +G + D G G S + DGQWH I ++ K + VD
Sbjct: 82 HADFATVQLRNGFPYFSYDLGSGDTSTMIPTK----INDGQWHKIKIVRVKQEGILYVDD 137
Query: 288 MTTDKPGLGPPGSSETDTNNAVFIGGHPFLSLSSKKSGPRT 328
++ + P + D +++GG P + +
Sbjct: 138 ASSQ--TISPKKADILDVVGILYVGGLPINYTTRRIGPVTY 176
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein,
vitamin K-dependent protein, AXL/SKY/MER ligand, laminin
G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4
b.29.1.4 PDB: 2c5d_A*
Length = 422
Score = 186 bits (473), Expect = 1e-55
Identities = 53/345 (15%), Positives = 111/345 (32%), Gaps = 34/345 (9%)
Query: 8 GTSKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHY 67
+ R+ + + + D +T +GI+ + + ++ L ++ G++
Sbjct: 46 SGTPVIRLRFKRLQPT---RLVAEFDFRTFDP-EGILLFAGGHQDSTWIVLALRAGRLEL 101
Query: 68 SFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIF- 126
SSG + G W T+ + +K++ V + G
Sbjct: 102 QLRYNGVGRVTSSGPVIN-HGMWQTISVEELARNLVIKVNRDAVMKIAVAGDLFQPERGL 160
Query: 127 --GPFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNK---LVQDKHTSSGVIPCSDK 181
+GG+P + LV +N GC+R+ N +Q+ + + C
Sbjct: 161 YHLNLTVGGIPFHEKDLV---QPINPRLDGCMRSWNWLNGEDTTIQETVKVNTRMQCFSV 217
Query: 182 TESGVFFYNSGGYVKGVEQFRV--------GREMELKMDVKPRNISGLLLSVHSKK---D 230
TE G F+ SG ++ R E+E+ ++P +G+L ++ +
Sbjct: 218 TERGSFYPGSGFAFYSLDYMRTPLDVGTESTWEVEVVAHIRPAADTGVLFALWAPDLRAV 277
Query: 231 YFILQMIDGSVKATVDNGKGPIS--AIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDSM 288
+ ++D + ++ CDGQ H + ++ VD
Sbjct: 278 PLSVALVDYHSTKKLKKQLVVLAVEHTALALMEIKVCDGQEHVVTVSLRDGEATLEVDGT 337
Query: 289 -------TTDKPGLGPPGSSETDTNNAVFIGGHPFLSLSSKKSGP 326
+ F GG P + ++S
Sbjct: 338 RGQSEVSAAQLQERLAVLERHLRSPVLTFAGGLPDVPVTSAPVTA 382
Score = 69.1 bits (168), Expect = 3e-13
Identities = 29/188 (15%), Positives = 60/188 (31%), Gaps = 25/188 (13%)
Query: 10 SKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHYSF 69
S + + + I+ ++ G++F + + V L V H +
Sbjct: 233 SLDYMRTPLDVGTESTWEVEVVAHIRPAAD-TGVLFALWA-PDLRAVPLSVALVDYHSTK 290
Query: 70 NCGSGPMALSSGDKLIL-------DGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGS--- 119
+ L+ + DG+ H V S + L++DG S
Sbjct: 291 KLKKQLVVLAVEHTALALMEIKVCDGQEHVVTVSLRDGEATLEVDGTRGQSEVSAAQLQE 350
Query: 120 -----SKTLNIFGPFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNKLV---QDKHT 171
+ L + GG+P + + + GC+ L+ N +L+ + +
Sbjct: 351 RLAVLERHLRSPVLTFAGGLPDVPV----TSAPVTAFYRGCMT-LEVNRRLLDLDEAAYK 405
Query: 172 SSGVIPCS 179
S + S
Sbjct: 406 HSDITAHS 413
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil,
glycoprotein, laminin EGF-like domain, extracellular
matrix, laminin G-like domain; HET: NAG; 2.80A {Mus
musculus}
Length = 608
Score = 187 bits (475), Expect = 2e-54
Identities = 63/315 (20%), Positives = 128/315 (40%), Gaps = 21/315 (6%)
Query: 12 SSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHYSFNC 71
+ N +T S ++ Y+A D++++ + DG + S++
Sbjct: 211 EGYALVSRPIRWYPNISTVMFKFRTFSS-SALLMYLATRDLKDFMSVELSDGHVKVSYDL 269
Query: 72 GSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDG-----QVVAEGESKGSSKTLNI- 125
GSG ++ S DG+W SR Q + I + S G++ L++
Sbjct: 270 GSGMTSVVSNQNH-NDGKWKAFTLSRIQKQANISIVDIDSNQEENVATSSSGNNFGLDLK 328
Query: 126 -FGPFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNKLVQDKHT--SSGVIP-CSDK 181
Y GG+P T +R + + + GCL++++ + + GV CS +
Sbjct: 329 ADDKIYFGGLP--TLRNLRPEVNVKK-YSGCLKDIEISRTPYNILSSPDYVGVTKGCSLE 385
Query: 182 TESGVFFYNSGGYVKGVEQFRVGREMELKMDVKPRNISGLLLSVHSK-KDYFILQMIDGS 240
V F G+V+ + + E+ + RN SG++L + Y+ + + G
Sbjct: 386 NVYTVSF-PKPGFVE-LAAVSIDVGTEINLSFSTRNESGIILLGSGGGQAYYAIFLNKGR 443
Query: 241 VKATVDNGKGPISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGS 300
++ + +G + I +P F DG+ H++ +T+ + +V +D D+ +
Sbjct: 444 LEVHLSSGTRTMRKIVIKPEPNRFHDGREHSVHVERTRGIFTVQIDE---DRRHMQNLTE 500
Query: 301 SETDTNNAVFIGGHP 315
+ +F+GG P
Sbjct: 501 EQPIEVKKLFVGGAP 515
Score = 169 bits (428), Expect = 9e-48
Identities = 57/343 (16%), Positives = 130/343 (37%), Gaps = 36/343 (10%)
Query: 12 SSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHYSFNC 71
Y + + + + +KT D ++FY+ K ID++A+ ++ G++ + ++
Sbjct: 18 DCVRTYRPEI-KKGSYNNIVVHVKTA-VADNLLFYLGSAKFIDFLAIEMRKGKVSFLWDV 75
Query: 72 GSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQ---------VVAEGESKGSSKT 122
GSG + D I D W+ +E SR +G + + S
Sbjct: 76 GSGVGRVEYPDLTIDDSYWYRIEASRTGRNGSISVRALDGPKASMVPSTYHSVSPPGYTI 135
Query: 123 LNI--FGPFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNKLVQDKHTSSGVIPCS- 179
L++ ++GG+ + + + TF GC+ +NK + + C
Sbjct: 136 LDVDANAMLFVGGLT---GKIKKADAVRVITFTGCMGETYFDNKPIGLWNFREKEGDCKG 192
Query: 180 -------DKTESGVFFYNSGGYVKGVEQFRVGREMELKMDVKPRNISGLLLSVHSK--KD 230
+ +E + F G + + + + S LL+ + ++ KD
Sbjct: 193 CTVSPQVEDSEGTIQFDGEGYALVSRPIRWYPNISTVMFKFRTFSSSALLMYLATRDLKD 252
Query: 231 YFILQMIDGSVKATVDNGKGPISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTT 290
+ +++ DG VK + D G G S + + + DG+W + + ++++ + +
Sbjct: 253 FMSVELSDGHVKVSYDLGSGMTS-VVSNQN---HNDGKWKAFTLSRIQKQANISIVDIDS 308
Query: 291 DK------PGLGPPGSSETDTNNAVFIGGHPFLSLSSKKSGPR 327
++ G + ++ ++ GG P L + +
Sbjct: 309 NQEENVATSSSGNNFGLDLKADDKIYFGGLPTLRNLRPEVNVK 351
Score = 94.4 bits (234), Expect = 2e-21
Identities = 29/160 (18%), Positives = 54/160 (33%), Gaps = 12/160 (7%)
Query: 10 SKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHYSF 69
K +E ++ + + S +T + GII + Y A+++ G++
Sbjct: 393 PKPGFVELAAVSIDVGTEINLSF---STRNESGIILLGSG-GGQAYYAIFLNKGRLEVHL 448
Query: 70 NCGSGPMA---LSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIF 126
+ G+ M + DG H+V R + ++ID
Sbjct: 449 SSGTRTMRKIVIKPEPNRFHDGREHSVHVERTRGIFTVQIDEDRRHMQNLTEEQ--PIEV 506
Query: 127 GPFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNKLV 166
++GG P N F GC+ NL N+ +
Sbjct: 507 KKLFVGGAPPEFQPSPLRN---IPAFQGCVWNLVINSIPM 543
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 177 bits (450), Expect = 2e-52
Identities = 63/357 (17%), Positives = 117/357 (32%), Gaps = 58/357 (16%)
Query: 9 TSKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHYS 68
+KSS + T+ KTTS DG+I Y + + D++ + + G +HY
Sbjct: 11 KTKSSYVALATLQAYTS--MHLFFQFKTTSL-DGLILYNSGDGN-DFIVVELVKGYLHYV 66
Query: 69 FNCGSGPMALSSGDKLIL-DGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFG 127
F+ G+G + L D +WH V SR + + + ++ L++
Sbjct: 67 FDLGNGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKI-TTQITAGARNLDLKS 125
Query: 128 PFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNKLV----QDKHTSSGVIP------ 177
Y+GGV T + + + F GCL ++ N +L + +
Sbjct: 126 DLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNGRLPDLISDALFCNGQIERGCEGPS 185
Query: 178 ----------------------------------CSDKTESGVFFYNSGG--YVKGVEQF 201
C+D + +F G Y
Sbjct: 186 TTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKWPPNDR 245
Query: 202 RVGREMELKMDVKPRNISGLLLSVHS---KKDYFILQMIDGSVKATVDNGKGPISAIYTP 258
R L + +L+ V S DY L + G + + G I+ +
Sbjct: 246 PSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEES- 304
Query: 259 SDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSETDTNNAVFIGGHP 315
DG++H + ++ ++ VDS + + ++ + IGG
Sbjct: 305 --NAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKE 359
Score = 102 bits (254), Expect = 2e-24
Identities = 37/190 (19%), Positives = 68/190 (35%), Gaps = 17/190 (8%)
Query: 1 MSYYVIAGTSKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHI-DYVALY 59
+ Y+ + ++P +I T + + ++ V + DY+ L+
Sbjct: 224 GTTYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQK-EAVLVRVDSSSGLGDYLELH 282
Query: 60 VKDGQIHYSFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGS 119
+ G+I FN G+ +A+ + +I DG++H V F+R + L++D V E G
Sbjct: 283 IHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGR 342
Query: 120 SKT-LNIFGPFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNKLVQD--KHTSSGVI 176
T N +GG F G L L N V + + +
Sbjct: 343 QLTIFNSQATIIIGGKEQGQP------------FQGQLSGLYYNGLKVLNMAAENDANIA 390
Query: 177 PCSDKTESGV 186
+ G
Sbjct: 391 IVGNVRLVGE 400
Score = 73.1 bits (179), Expect = 1e-14
Identities = 31/138 (22%), Positives = 57/138 (41%), Gaps = 8/138 (5%)
Query: 186 VFFYNSGGYVKGVEQFRVGREMELKMDVKPRNISGLLL-SVHSKKDYFILQMIDGSVKAT 244
V F YV + + M L K ++ GL+L + D+ +++++ G +
Sbjct: 8 VTFKTKSSYVA-LATLQAYTSMHLFFQFKTTSLDGLILYNSGDGNDFIVVELVKGYLHYV 66
Query: 245 VDNGKGPISAIYTPSDPYFFCDGQWHTI-VAIKTKNVISVAVDSMTTDKPGLGPPGSSET 303
D G G + S D QWH + ++ T N+ +V +D+ T G+
Sbjct: 67 FDLGNGA--NLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKIT---TQITAGARNL 121
Query: 304 DTNNAVFIGGHPFLSLSS 321
D + ++IGG + S
Sbjct: 122 DLKSDLYIGGVAKETYKS 139
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 171 bits (433), Expect = 2e-47
Identities = 70/331 (21%), Positives = 117/331 (35%), Gaps = 24/331 (7%)
Query: 10 SKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHYSF 69
S ++ D S+ ++ GI+ D + L + G++ +
Sbjct: 664 DGSMFMKIQLPVVMHTEAEDVSLRFRSQRA-YGILMATTSRDSADTLRLELDAGRVKLTV 722
Query: 70 NCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFGPF 129
N G GP L +G L D EWHTV R+ S KL +D Q G+ G L
Sbjct: 723 NLGKGPETLFAGYNLN-DNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFHNIE 781
Query: 130 YLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNKLVQDKHTSSGVIPCS--------DK 181
R + F+G L++L N D + + C +
Sbjct: 782 TGIITER------RYLSSVPSNFIGHLQSLTFNGMAYIDLCKNGDIDYCELNARFGFRNI 835
Query: 182 TESGVFFYNSGGYVKGVEQFRVGREMELKMDVKPRNISGLLLSVHSKK-DYFILQMIDGS 240
V F YV + + M L K ++ GL+L D+ +++++ G
Sbjct: 836 IADPVTFKTKSSYV-ALATLQAYTSMHLFFQFKTTSLDGLILYNSGDGNDFIVVELVKGY 894
Query: 241 VKATVDNGKGPISAIYTPSDPYFFCDGQWHTI-VAIKTKNVISVAVDSMTTDKPGLGPPG 299
+ D G G + S D QWH + ++ T N+ +V +D+ T G
Sbjct: 895 LHYVFDLGNGA--NLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKIT---TQITAG 949
Query: 300 SSETDTNNAVFIGGHPFLSLSSKKSGPRTKR 330
+ D + ++IGG + S K
Sbjct: 950 ARNLDLKSDLYIGGVAKETYKSLPKLVHAKE 980
Score = 168 bits (426), Expect = 2e-46
Identities = 66/364 (18%), Positives = 123/364 (33%), Gaps = 61/364 (16%)
Query: 8 GTSKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALY-VKDGQIH 66
++ +P + + S +KT S G++ Y D D++ L + G++
Sbjct: 4 PGAEGQWTRFPKWNAC--CESEMSFQLKTRSA-RGLVLYFDDEGFCDFLELILTRGGRLQ 60
Query: 67 YSFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIF 126
SF+ A D + DG WH V RQ + L ID E K + + +F
Sbjct: 61 LSFSIFCAEPATLLTDTPVNDGAWHNVRIRRQFRNTTLFIDQVEAKWVEVKSKRRDMTVF 120
Query: 127 GPFYLGGVPLNTST----LVRGNLGLNDTFVGCLRNLKSNNKLVQD-------------- 168
++GG+P L ++ + F G +R+++ + L
Sbjct: 121 SGLFVGGLPPELRAAALKLTLASVREREPFKGWIRDVRVQSSLALPVDSGEVKLDDEPPN 180
Query: 169 -----------------------------------KHTSSGVIPCSDKTESGVFFYNSGG 193
T CS E + +
Sbjct: 181 SGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSE 240
Query: 194 YV--KGVEQFRVGREMELKMDVKPRNISGLLLSVHSKKDYFILQMIDGSVKATVDNGKGP 251
Y + E+ + K +GL+L DY L + +G+V ++ G G
Sbjct: 241 YFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGKSADYVNLALKNGAVSLVINLGSGA 300
Query: 252 ISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSETDTNNAVFI 311
A+ P + F D WH + + ++++VD + T G + +++ ++
Sbjct: 301 FEALVEPVN-GKFNDNAWHDVKVTRNLRQVTISVDGILT-TTGYTQEDYTMLGSDDFFYV 358
Query: 312 GGHP 315
GG P
Sbjct: 359 GGSP 362
Score = 166 bits (422), Expect = 6e-46
Identities = 65/356 (18%), Positives = 120/356 (33%), Gaps = 58/356 (16%)
Query: 10 SKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHYSF 69
+KSS + T+ KTTS DG+I Y + + D++ + + G +HY F
Sbjct: 844 TKSSYVALATLQAY--TSMHLFFQFKTTSL-DGLILYNSGDGN-DFIVVELVKGYLHYVF 899
Query: 70 NCGSGPMALSSGDKLIL-DGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFGP 128
+ G+G + L D +WH V SR + + + ++ L++
Sbjct: 900 DLGNGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKIT-TQITAGARNLDLKSD 958
Query: 129 FYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNK---LVQDKHTSSGVI--------- 176
Y+GGV T + + + F GCL ++ N + L+ D +G I
Sbjct: 959 LYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNGRLPDLISDALFCNGQIERGCEGPST 1018
Query: 177 -------------------------------PCSDKTESGVFFYNSGGYVK---GVEQFR 202
P + + F GG +
Sbjct: 1019 TCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKWPPNDRP 1078
Query: 203 VGREMELKMDVKPRNISGLLLSVHS---KKDYFILQMIDGSVKATVDNGKGPISAIYTPS 259
R L + +L+ V S DY L + G + + G I+ + +
Sbjct: 1079 STRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNA 1138
Query: 260 DPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSETDTNNAVFIGGHP 315
DG++H + ++ ++ VDS + + ++ + IGG
Sbjct: 1139 ---IINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKE 1191
Score = 165 bits (419), Expect = 1e-45
Identities = 67/343 (19%), Positives = 130/343 (37%), Gaps = 50/343 (14%)
Query: 2 SYYVIAGTSKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVK 61
Y+ + + IT FK T +++G++ + DYV L +K
Sbjct: 240 EYFCYDLSQNPIQSSSDEITLSFK-----------TLQRNGLMLHTGKSA--DYVNLALK 286
Query: 62 DGQIHYSFNCGSGPMAL--SSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGS 119
+G + N GSG + D WH V+ +R + +DG + G ++
Sbjct: 287 NGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQED 346
Query: 120 SKTLNIFGPFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNKLVQDKHTSSGV---- 175
L FY+GG P ST +++ F+GCL+ + N V+ + +
Sbjct: 347 YTMLGSDDFFYVGGSP---STADLPGSPVSNNFMGCLKEVVYKNNDVRLELSRLAKQGDP 403
Query: 176 ---------IPCSDKTESGVFFYNSGGYVKGVEQFRVGREMELKMDVKPRNISGLLLSVH 226
C + + + + ++ + + D + +GL+L H
Sbjct: 404 KMKIHGVVAFKCENVATLDPITFETPESFISLPKWNAKKTGSISFDFRTTEPNGLILFSH 463
Query: 227 SK--------------KDYFILQMIDGSVKATVDNGKGPISAIYTPSDPYFFCDGQWHTI 272
K D+F ++M+DG + +D G G I + DG+W+ +
Sbjct: 464 GKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDMGSGTIKIK---ALQKKVNDGEWYHV 520
Query: 273 VAIKTKNVISVAVDSMTTDKPGLGPPGSSETDTNNAVFIGGHP 315
+ +++V+++ T P P S D ++ +++GG P
Sbjct: 521 DFQRDGRSGTISVNTLRT--PYTAPGESEILDLDDELYLGGLP 561
Score = 146 bits (370), Expect = 4e-39
Identities = 82/392 (20%), Positives = 147/392 (37%), Gaps = 72/392 (18%)
Query: 12 SSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVAD------------VKHIDYVALY 59
S I P + S D +TT +G+I + + +D+ A+
Sbjct: 430 ESFISLPKWNAK--KTGSISFDFRTTEP-NGLILFSHGKPRHQKDAKHPQMIKVDFFAIE 486
Query: 60 VKDGQIHYSFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGS 119
+ DG ++ + GSG + + + K + DGEW+ V+F R SG + ++ + G
Sbjct: 487 MLDGHLYLLLDMGSGTIKIKALQKKVNDGEWYHVDFQRDGRSGTISVNTLRTP-YTAPGE 545
Query: 120 SKTLNIFGPFYLGGVPLNTSTLVR----GNLGLNDTFVGCLRNLKSNNKLV-----QDKH 170
S+ L++ YLGG+P N + LV LN +VGC+R+L + + +
Sbjct: 546 SEILDLDDELYLGGLPENKAGLVFPTEVWTALLNYGYVGCIRDLFIDGQSKDIRQMAEVQ 605
Query: 171 TSSGVIP--------------------CSDK-------------------TESGVFFYNS 191
+++GV P C D E+ V Y+
Sbjct: 606 STAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYDG 665
Query: 192 GGYVK-GVEQFRVGREMELKMDVKPRNISGLLLSVHSK--KDYFILQMIDGSVKATVDNG 248
++K + ++ + + + G+L++ S+ D L++ G VK TV+ G
Sbjct: 666 SMFMKIQLPVVMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKLTVNLG 725
Query: 249 KGPISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSETDTNNA 308
KGP T Y D +WHT+ ++ + + VD G + + +N
Sbjct: 726 KGP----ETLFAGYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMT-GQMAGDHTRLEFHNI 780
Query: 309 VFIGGHPFLSLSSKKSGPRTKRRSVFLINANC 340
LSS S +S+
Sbjct: 781 ETGIITERRYLSSVPSNFIGHLQSLTFNGMAY 812
Score = 108 bits (269), Expect = 8e-26
Identities = 37/189 (19%), Positives = 68/189 (35%), Gaps = 17/189 (8%)
Query: 1 MSYYVIAGTSKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHI-DYVALY 59
+ Y+ + ++P +I T + + ++ V + DY+ L+
Sbjct: 1056 GTTYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQK-EAVLVRVDSSSGLGDYLELH 1114
Query: 60 VKDGQIHYSFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGS 119
+ G+I FN G+ +A+ + +I DG++H V F+R + L++D V E G
Sbjct: 1115 IHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGR 1174
Query: 120 SKT-LNIFGPFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNKLVQD--KHTSSGVI 176
T N +GG F G L L N V + + +
Sbjct: 1175 QLTIFNSQATIIIGGKEQGQP------------FQGQLSGLYYNGLKVLNMAAENDANIA 1222
Query: 177 PCSDKTESG 185
+ G
Sbjct: 1223 IVGNVRLVG 1231
Score = 65.2 bits (158), Expect = 1e-11
Identities = 23/132 (17%), Positives = 50/132 (37%), Gaps = 8/132 (6%)
Query: 187 FFYNSGGYVKGVEQFRVGREMELKMDVKPRNISGLLLSVHSK--KDYFILQMI-DGSVKA 243
F G + + ++ E E+ +K R+ GL+L + D+ L + G ++
Sbjct: 3 FPGAEGQWTR-FPKWNACCESEMSFQLKTRSARGLVLYFDDEGFCDFLELILTRGGRLQL 61
Query: 244 TVDNGKGPISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSET 303
+ + + T + DG WH + + ++ +D + K +
Sbjct: 62 SFSIFCAEPATLLTDTP---VNDGAWHNVRIRRQFRNTTLFIDQVEA-KWVEVKSKRRDM 117
Query: 304 DTNNAVFIGGHP 315
+ +F+GG P
Sbjct: 118 TVFSGLFVGGLP 129
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein;
HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB:
1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A*
Length = 205
Score = 145 bits (368), Expect = 2e-42
Identities = 41/172 (23%), Positives = 71/172 (41%), Gaps = 9/172 (5%)
Query: 26 NKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHYSFNCGSGPMALSSGDKLI 85
K S +++T +G+IFY D+ L ++DG+ + + + +G +L
Sbjct: 38 TKTSSSFEVRTWDP-EGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGPRLD 96
Query: 86 LDGEWHTVEFSRQQLSGKLKIDGQVV--AEGESKGSSKTLNIFGPFYLGGVPLNTSTLVR 143
DG WH VE + S L++DG+ V S + + LGG+ S L
Sbjct: 97 -DGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLLFPASNL-- 153
Query: 144 GNLGLNDTFVGCLRNLKSNNKLVQDKHTS-SGVIPCSDKTESGVFFYNSGGY 194
L L GCLR +K + ++ + + C ++ G+F G
Sbjct: 154 -RLPLVPALDGCLRRDSWLDKQAEISASAPTSLRSCDVESNPGIFLP-PGTQ 203
Score = 73.0 bits (179), Expect = 2e-15
Identities = 21/113 (18%), Positives = 44/113 (38%), Gaps = 7/113 (6%)
Query: 207 MELKMDVKPRNISGLLLSVHS--KKDYFILQMIDGSVKATVDNGKGPISAIYTPSDPYFF 264
+V+ + G++ + K D+F+L + DG + + N ++ P
Sbjct: 40 TSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGPR----L 95
Query: 265 CDGQWHTIVAIKTKNVISVAVDS-MTTDKPGLGPPGSSETDTNNAVFIGGHPF 316
DG+WH + + + + VD + P +S+ + +GG F
Sbjct: 96 DDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLLF 148
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller,
laminin-G, signaling, protein binding; HET: NAG; 2.85A
{Rattus norvegicus} PDB: 3v65_A
Length = 191
Score = 144 bits (365), Expect = 3e-42
Identities = 40/181 (22%), Positives = 74/181 (40%), Gaps = 7/181 (3%)
Query: 2 SYYVIAGTSKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHI-DYVALYV 60
+Y S + + F + ++T + G++ ++ DY+AL +
Sbjct: 11 TYIEYLNAVIESELTNEIPAEKALQSNHFELSLRTEA-TQGLVLWIGKAAERADYMALAI 69
Query: 61 KDGQIHYSFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSS 120
DG + S++ GS P+ L S K+ W + R+ G L++ + G S +
Sbjct: 70 VDGHLQLSYDLGSQPVVLRSTVKVN-TNRWLRIRAHREHREGSLQVGNEAPVTGSSPLGA 128
Query: 121 KTLNIFGPFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNK---LVQDKHTSSGVIP 177
L+ G +LGG+ FVGCLR++ ++ L++D T + P
Sbjct: 129 TQLDTDGALWLGGLQKLPVGQALPK-AYGTGFVGCLRDVVVGHRQLHLLEDAVTKPELRP 187
Query: 178 C 178
C
Sbjct: 188 C 188
Score = 76.8 bits (189), Expect = 6e-17
Identities = 25/133 (18%), Positives = 54/133 (40%), Gaps = 8/133 (6%)
Query: 200 QFRVGREMELKMDVKPRNISGLLLSVHS---KKDYFILQMIDGSVKATVDNGKGPISAIY 256
+ + ++ ++ GL+L + + DY L ++DG ++ + D G P+ +
Sbjct: 30 AEKALQSNHFELSLRTEATQGLVLWIGKAAERADYMALAIVDGHLQLSYDLGSQPVV-LR 88
Query: 257 TPSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSETDTNNAVFIGGHPF 316
+ +W I A + S+ V + G P G+++ DT+ A+++GG
Sbjct: 89 STV---KVNTNRWLRIRAHREHREGSLQVGNEAP-VTGSSPLGATQLDTDGALWLGGLQK 144
Query: 317 LSLSSKKSGPRTK 329
L +
Sbjct: 145 LPVGQALPKAYGT 157
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4
PDB: 1pz8_A 1pz9_A 1q56_A
Length = 204
Score = 145 bits (366), Expect = 3e-42
Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 9/178 (5%)
Query: 8 GTSKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHI-DYVALYVKDGQIH 66
P+ F + IKT + G+I + DY+AL + DG +
Sbjct: 32 SPDALDYPAEPSEKAL--QSNHFELSIKTEA-TQGLILWSGKGLERSDYIALAIVDGFVQ 88
Query: 67 YSFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIF 126
++ GS P+ L S + W ++ R Q G L++ + G S + L+
Sbjct: 89 MMYDLGSKPVVLRSTVPIN-TNHWTHIKAYRVQREGSLQVGNEAPITGSSPLGATQLDTD 147
Query: 127 GPFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNK---LVQDKHTSSGVIPCSDK 181
G +LGG+ S + + F+GC+R++ + + LV+D + ++ CS K
Sbjct: 148 GALWLGGME-RLSVAHKLPKAYSTGFIGCIRDVIVDRQELHLVEDALNNPTILHCSAK 204
Score = 77.6 bits (191), Expect = 5e-17
Identities = 30/156 (19%), Positives = 59/156 (37%), Gaps = 8/156 (5%)
Query: 177 PCSDKTESGVFFYNSGGYVKGVEQFRVGREMELKMDVKPRNISGLLL---SVHSKKDYFI 233
+ + V + + ++ +K GL+L + DY
Sbjct: 20 RTYMEYHNAVTKSPDALDYPAEPSEKALQSNHFELSIKTEATQGLILWSGKGLERSDYIA 79
Query: 234 LQMIDGSVKATVDNGKGPISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKP 293
L ++DG V+ D G P+ + + W I A + + S+ V +
Sbjct: 80 LAIVDGFVQMMYDLGSKPVV-LRSTVP---INTNHWTHIKAYRVQREGSLQVGNEAP-IT 134
Query: 294 GLGPPGSSETDTNNAVFIGGHPFLSLSSKKSGPRTK 329
G P G+++ DT+ A+++GG LS++ K +
Sbjct: 135 GSSPLGATQLDTDGALWLGGMERLSVAHKLPKAYST 170
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2,
protein structure initiative; 1.40A {Mus musculus}
Length = 189
Score = 138 bits (350), Expect = 4e-40
Identities = 34/178 (19%), Positives = 63/178 (35%), Gaps = 12/178 (6%)
Query: 10 SKSSRIEYPTITGR---FKNKFDFSIDIKTTSEQDGIIFYVADVKH--IDYVALYVKDGQ 64
+ S +E + K + G++ Y D+V+L + +
Sbjct: 15 NGFSYLELKGLHTFERDLGEKMALEMVFLARGP-SGLLLYNGQKTDGKGDFVSLALHNRH 73
Query: 65 IHYSFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLN 124
+ + ++ G G + S + + G W V R G L++ GES LN
Sbjct: 74 LEFRYDLGKGAAIIRSKEPIA-LGTWVRVFLERNGRKGALQVGDGPRVLGESPVPHTMLN 132
Query: 125 IFGPFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNK---LVQDKHTSSGVIPCS 179
+ P Y+GG P + S L R + F G ++ + + + V P +
Sbjct: 133 LKEPLYVGGAP-DFSKLAR-GAAVASGFDGAIQLVSLRGHQLLTQEHVLRAVDVAPFA 188
Score = 73.0 bits (179), Expect = 2e-15
Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 9/130 (6%)
Query: 203 VGREMELKMDVKPRNISGLLL----SVHSKKDYFILQMIDGSVKATVDNGKGPISAIYTP 258
+G +M L+M R SGLLL K D+ L + + ++ D GKG
Sbjct: 32 LGEKMALEMVFLARGPSGLLLYNGQKTDGKGDFVSLALHNRHLEFRYDLGKGAAII--RS 89
Query: 259 SDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSETDTNNAVFIGGHPFLS 318
+P G W + + ++ V G P + + +++GG P S
Sbjct: 90 KEPI--ALGTWVRVFLERNGRKGALQVGDGPR-VLGESPVPHTMLNLKEPLYVGGAPDFS 146
Query: 319 LSSKKSGPRT 328
++ + +
Sbjct: 147 KLARGAAVAS 156
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin
G-like domain, jellyroll, androgen binding protein
(ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4
PDB: 1kdk_A* 1kdm_A*
Length = 170
Score = 127 bits (320), Expect = 6e-36
Identities = 39/172 (22%), Positives = 66/172 (38%), Gaps = 13/172 (7%)
Query: 8 GTSKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHY 67
G + + + K S +++T +G+IFY D+ L ++DG+
Sbjct: 11 GQEPIAVMTFDLTK---ITKTSSSFEVRTWDP-EGVIFYGDTNPKDDWFMLGLRDGRPEI 66
Query: 68 SFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFG 127
+ + + +G +L DG WH VE + S L++DG+ V + I
Sbjct: 67 QLHNHWAQLTVGAGPRLD-DGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGHPIMRI-- 123
Query: 128 PFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNKLVQ-DKHTSSGVIPC 178
LGG+ S L L L GCLR +K + + + C
Sbjct: 124 --ALGGLLFPASNL---RLPLVPALDGCLRRDSWLDKQAEISASAPTSLRSC 170
Score = 68.4 bits (167), Expect = 5e-14
Identities = 18/114 (15%), Positives = 39/114 (34%), Gaps = 11/114 (9%)
Query: 205 REMELKMDVKPRNISGLLLSVHSK--KDYFILQMIDGSVKATVDNGKGPISAIYTPSDPY 262
+ +V+ + G++ + D+F+L + DG + + N ++ P
Sbjct: 26 TKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGPR--- 82
Query: 263 FFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSETDTNNAVFIGGHPF 316
DG+WH + + + + VD + +GG F
Sbjct: 83 -LDDGRWHQVEVKMEGDSVLLEVDGEEV-----LRLRQVSGHPIMRIALGGLLF 130
>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A
{Bos taurus}
Length = 182
Score = 127 bits (320), Expect = 1e-35
Identities = 41/174 (23%), Positives = 63/174 (36%), Gaps = 8/174 (4%)
Query: 12 SSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHYSFNC 71
S ++ D S+ ++ GI+ D + L + G++ + N
Sbjct: 13 SMFMKIQLPVVMHTEAEDVSLRFRSQRA-YGILMATTSRDSADTLRLELDAGRVKLTVNL 71
Query: 72 GSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFGPFYL 131
G GP L +G L D EWHTV R+ S KL +D Q G+ G L F
Sbjct: 72 GKGPETLFAGYNLN-DNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLE-FHNIET 129
Query: 132 GGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNKLVQDKHTSSGVIPCSDKTESG 185
G + R + F+G L++L N D + + C G
Sbjct: 130 GIITER-----RYLSSVPSNFIGHLQSLTFNGMAYIDLCKNGDIDYCELNARFG 178
Score = 63.0 bits (153), Expect = 5e-12
Identities = 27/136 (19%), Positives = 58/136 (42%), Gaps = 9/136 (6%)
Query: 183 ESGVFFYNSGGYVK-GVEQFRVGREMELKMDVKPRNISGLLLSVHSK--KDYFILQMIDG 239
E+ V Y+ ++K + ++ + + + G+L++ S+ D L++ G
Sbjct: 4 EATVLSYDGSMFMKIQLPVVMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRLELDAG 63
Query: 240 SVKATVDNGKGPISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPG 299
VK TV+ GKGP + ++ + D +WHT+ ++ + + VD G
Sbjct: 64 RVKLTVNLGKGPET-LFAGYN---LNDNEWHTVRVVRRGKSLKLTVDDQQAMT-GQMAGD 118
Query: 300 SSETDTNNAVFIGGHP 315
+ + +N + G
Sbjct: 119 HTRLEFHN-IETGIIT 133
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal
binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A
Length = 195
Score = 126 bits (319), Expect = 2e-35
Identities = 39/189 (20%), Positives = 76/189 (40%), Gaps = 24/189 (12%)
Query: 10 SKSSRIEYPTI---TGRFKNKFDFSIDIKTTSEQDGIIFYVADV-----KHIDYVALYVK 61
+ +P + ++++T++ G++ + + D+++L ++
Sbjct: 11 HDDGFLAFPGHVFSRSLPEVPETIELEVRTSTA-SGLLLWQGVEVGEAGQGKDFISLGLQ 69
Query: 62 DGQIHYSFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSK 121
DG + + + GSG L S D + DGEWH V R+ G +++DG+ + G S G +
Sbjct: 70 DGHLVFRYQLGSGEARLVSEDPIN-DGEWHRVTALREGRRGSIQVDGEELVSGRSPGPNV 128
Query: 122 TLNIFGPFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNK-----------LVQDKH 170
+N G Y+GG P + GC++NL ++ L
Sbjct: 129 AVNAKGSVYIGGAP---DVATLTGGRFSSGITGCVKNLVLHSARPGAPPPQPLDLQHRAQ 185
Query: 171 TSSGVIPCS 179
+ PC
Sbjct: 186 AGANTRPCP 194
Score = 77.6 bits (191), Expect = 4e-17
Identities = 31/143 (21%), Positives = 55/143 (38%), Gaps = 15/143 (10%)
Query: 183 ESGVFFYNSGGYV---KGVEQFRVGREMELKMDVKPRNISGLLL-------SVHSKKDYF 232
+ G +F++ G + ++++V+ SGLLL KD+
Sbjct: 5 QYGAYFHDDGFLAFPGHVFSRSLPEVPETIELEVRTSTASGLLLWQGVEVGEAGQGKDFI 64
Query: 233 ILQMIDGSVKATVDNGKGPISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDK 292
L + DG + G G + + DG+WH + A++ S+ VD
Sbjct: 65 SLGLQDGHLVFRYQLGSGEAR-LVSED---PINDGEWHRVTALREGRRGSIQVDGEEL-V 119
Query: 293 PGLGPPGSSETDTNNAVFIGGHP 315
G P + + +V+IGG P
Sbjct: 120 SGRSPGPNVAVNAKGSVYIGGAP 142
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus}
Length = 184
Score = 123 bits (310), Expect = 3e-34
Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 9/158 (5%)
Query: 12 SSRIEYPTITGRFK-NKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHYSFN 70
S Y + + + ++ KT +++G++ + DYV L +K+G + N
Sbjct: 13 SEYFCYDLSQNPIQSSSDEITLSFKTL-QRNGLMLHTGK--SADYVNLALKNGAVSLVIN 69
Query: 71 CGSGPMAL--SSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFGP 128
GSG + D WH V+ +R + +DG + G ++ L
Sbjct: 70 LGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDF 129
Query: 129 FYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNKLV 166
FY+GG P ST +++ F+GCL+ + N V
Sbjct: 130 FYVGGSP---STADLPGSPVSNNFMGCLKEVVYKNNDV 164
Score = 89.1 bits (221), Expect = 2e-21
Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 5/137 (3%)
Query: 181 KTESGVFFYNSGGYV--KGVEQFRVGREMELKMDVKPRNISGLLLSVHSKKDYFILQMID 238
K E F S Y + E+ + K +GL+L DY L + +
Sbjct: 3 KEEYIATFKGSE-YFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGKSADYVNLALKN 61
Query: 239 GSVKATVDNGKGPISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPP 298
G+V ++ G G A+ P + F D WH + + ++++VD + T G
Sbjct: 62 GAVSLVINLGSGAFEALVEPVNGK-FNDNAWHDVKVTRNLRQVTISVDGILTTT-GYTQE 119
Query: 299 GSSETDTNNAVFIGGHP 315
+ +++ ++GG P
Sbjct: 120 DYTMLGSDDFFYVGGSP 136
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium,
cell adhesion, EGF-like domain, glycoprotein, membrane,
metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C*
2wqz_C* 1c4r_A 3bop_A 3mw4_A*
Length = 178
Score = 110 bits (276), Expect = 2e-29
Identities = 32/155 (20%), Positives = 59/155 (38%), Gaps = 15/155 (9%)
Query: 16 EYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVK-HIDYVALYVKDGQIHYSFNCGSG 74
++P +I T +++ ++ V DY+ L++ G+I FN G+
Sbjct: 19 KWPPNDRPSTRADRLAIGFSTV-QKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTD 77
Query: 75 PMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQ-VVAEGESKGSSKTLNIFGPFYLGG 133
+A+ + +I DG++H V F+R + L++D V+ + N +GG
Sbjct: 78 DIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGG 137
Query: 134 VPLNTSTLVRGNLGLNDTFVGCLRNLKSNNKLVQD 168
F G L L N V +
Sbjct: 138 KEQGQP------------FQGQLSGLYYNGLKVLN 160
Score = 68.4 bits (167), Expect = 5e-14
Identities = 24/139 (17%), Positives = 46/139 (33%), Gaps = 9/139 (6%)
Query: 183 ESGVFFYNSGGYVK---GVEQFRVGREMELKMDVKPRNISGLLLSVHS---KKDYFILQM 236
S F GG + R L + +L+ V S DY L +
Sbjct: 4 GSTYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHI 63
Query: 237 IDGSVKATVDNGKGPISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLG 296
G + + G I+ + + DG++H + ++ ++ VDS +
Sbjct: 64 HQGKIGVKFNVGTDDIAIEESNAI---INDGKYHVVRFTRSGGNATLQVDSWPVIERYPA 120
Query: 297 PPGSSETDTNNAVFIGGHP 315
+ ++ + IGG
Sbjct: 121 GRQLTIFNSQATIIIGGKE 139
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion,
splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB:
3biw_E*
Length = 226
Score = 108 bits (271), Expect = 3e-28
Identities = 32/155 (20%), Positives = 59/155 (38%), Gaps = 15/155 (9%)
Query: 16 EYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVK-HIDYVALYVKDGQIHYSFNCGSG 74
++P +I T +++ ++ V DY+ L++ G+I FN G+
Sbjct: 53 KWPPNDRPSTRADRLAIGFSTV-QKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTD 111
Query: 75 PMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQ-VVAEGESKGSSKTLNIFGPFYLGG 133
+A+ + +I DG++H V F+R + L++D V+ + N +GG
Sbjct: 112 DIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGG 171
Query: 134 VPLNTSTLVRGNLGLNDTFVGCLRNLKSNNKLVQD 168
F G L L N V +
Sbjct: 172 KEQGQP------------FQGQLSGLYYNGLKVLN 194
Score = 63.5 bits (154), Expect = 6e-12
Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 8/151 (5%)
Query: 170 HTSSGVIPCSDKTESGVFFYNSG--GYVKGVEQFRVGREMELKMDVKPRNISGLLLSVHS 227
+ S + + +F G Y R L + +L+ V S
Sbjct: 26 YRSPASLRGGHAGTTYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDS 85
Query: 228 ---KKDYFILQMIDGSVKATVDNGKGPISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVA 284
DY L + G + + G I+ + + DG++H + ++ ++
Sbjct: 86 SSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAI---INDGKYHVVRFTRSGGNATLQ 142
Query: 285 VDSMTTDKPGLGPPGSSETDTNNAVFIGGHP 315
VDS + + ++ + IGG
Sbjct: 143 VDSWPVIERYPAGRQLTIFNSQATIIIGGKE 173
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion,
splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E*
3mw3_A*
Length = 220
Score = 99.4 bits (247), Expect = 8e-25
Identities = 37/173 (21%), Positives = 68/173 (39%), Gaps = 21/173 (12%)
Query: 16 EYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVAD-VKHIDYVALYVKDGQIHYSFNCGSG 74
++P +I T +++ ++ V DY+ L++ G+I FN G+
Sbjct: 25 KWPPNDRPSTRADRLAIGFSTV-QKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTD 83
Query: 75 PMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSK-----TLNIFGPF 129
+A+ + +I DG++H V F+R + L++D V E G++ P+
Sbjct: 84 DIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGNNDNERLAIARQRIPY 143
Query: 130 YLGGVPL--------------NTSTLVRGNLGLNDTFVGCLRNLKSNNKLVQD 168
LG V + +T++ G F G L L N V +
Sbjct: 144 RLGRVVDEWLLDKGRQLTIFNSQATIIIGGKEQGQPFQGQLSGLYYNGLKVLN 196
Score = 55.1 bits (132), Expect = 4e-09
Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 8/129 (6%)
Query: 205 REMELKMDVKPRNISGLLLSVHSK---KDYFILQMIDGSVKATVDNGKGPISAIYTPSDP 261
R L + +L+ V S DY L + G + + G I+ I +
Sbjct: 35 RADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIA-IEESNAI 93
Query: 262 YFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSETDTNNAVFIGGHPFLSLSS 321
DG++H + ++ ++ VDS + P G+++ + L
Sbjct: 94 IN--DGKYHVVRFTRSGGNATLQVDSWPVIE--RYPAGNNDNERLAIARQRIPYRLGRVV 149
Query: 322 KKSGPRTKR 330
+ R
Sbjct: 150 DEWLLDKGR 158
>3flp_A SAP-like pentraxin; physiological doubly-stacked heptamer,
pentraxin fold, cyclic heptamer, invertebrate lectin,
sugar binding protein; 2.30A {Limulus polyphemus} PDB:
3flr_A 3flt_A
Length = 217
Score = 45.4 bits (107), Expect = 8e-06
Identities = 22/134 (16%), Positives = 41/134 (30%), Gaps = 9/134 (6%)
Query: 28 FDFSIDIKTTSEQDGIIFYVADVKHIDYVALYV---KDGQIHYSFNCGSGPMALSSGDKL 84
IK G IF A + + DG ++ + S
Sbjct: 34 LTVCQRIKPFHRNTGYIFSCATSNQDNQFITSMYVKSDGTLNLGLQVNASSNKYISCPIE 93
Query: 85 ILDGEWHTVEFSRQQLSGKLK--IDGQVVAEGESKGSSKTLNIFGPFYLGGVPLNTSTLV 142
I G+W+ V + G++ +G E+ G ++ G +G +
Sbjct: 94 IELGQWYHVCHVWSGVDGRMAVYANGSPCGTMENVGKGHQISAGGTVVIGQEQDK----I 149
Query: 143 RGNLGLNDTFVGCL 156
G +++ G L
Sbjct: 150 GGGFEEQESWSGEL 163
>2erf_A Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sugar binding
protein; 1.45A {Homo sapiens} SCOP: b.29.1.4 PDB: 2es3_A
1z78_A
Length = 209
Score = 44.8 bits (105), Expect = 1e-05
Identities = 24/155 (15%), Positives = 54/155 (34%), Gaps = 10/155 (6%)
Query: 9 TSKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHID-YVALYV--KDGQI 65
+ + R + F ++ + G + + H ++ K G +
Sbjct: 45 PVPDDKFQDLVDAVRTEKGFLLLASLRQMKKTRGTLLALERKDHSGQVFSVVSNGKAGTL 104
Query: 66 HYSFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNI 125
S +S + L+ G+W ++ Q+ +L ID + + + L++
Sbjct: 105 DLSLTVQGKQHVVSVEEALLATGQWKSITLFVQEDRAQLYIDCEKM-------ENAELDV 157
Query: 126 FGPFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLK 160
+ + L G+ND F G L+N++
Sbjct: 158 PIQSVFTRDLASIARLRIAKGGVNDNFQGVLQNVR 192
Score = 32.1 bits (72), Expect = 0.16
Identities = 17/121 (14%), Positives = 37/121 (30%), Gaps = 5/121 (4%)
Query: 196 KGVEQFRVGREMELKMDVKP-RNISGLLLSVHSKKD---YFILQMIDGSVKATVDNGKGP 251
V+ R + L ++ + G LL++ K F + + +
Sbjct: 53 DLVDAVRTEKGFLLLASLRQMKKTRGTLLALERKDHSGQVFSVVSNGKAGTLDLSLTVQG 112
Query: 252 ISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSETDTNNAVFI 311
+ + + GQW +I ++ + +D + L P S + A
Sbjct: 113 KQHVVSVEEALLA-TGQWKSITLFVQEDRAQLYIDCEKMENAELDVPIQSVFTRDLASIA 171
Query: 312 G 312
Sbjct: 172 R 172
>2v73_A CBM40, putative EXO-alpha-sialidase; carbohydrate-binding module,
bacterial pathogen, sialic acid, sugar-binding protein;
HET: SIA; 2.2A {Clostridium perfringens}
Length = 191
Score = 44.0 bits (103), Expect = 2e-05
Identities = 26/165 (15%), Positives = 57/165 (34%), Gaps = 14/165 (8%)
Query: 3 YYVIAGTSKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGI--IFYVADVKHID-YVALY 59
Y + T + R+ +F + + +I + I + ++D + Y +LY
Sbjct: 15 YGNLKITKEEERVNITGDLEKFSSLEEGTIVTRFNMNDTSIQSLIGLSDGNKANNYFSLY 74
Query: 60 VKDGQIHYSF--NCGSGPMALSSGDKLILDGEWHTVEFSRQQLSG-KLKIDGQVVAEGES 116
V G++ Y G+G + + + +T+ ++ G K+ ++G +V
Sbjct: 75 VSGGKVGYELRRQEGNGDFNVHHSADVTFNRGINTLALKIEKGIGAKIFLNGSLVKTVSD 134
Query: 117 KGSSKTLNI-FGPFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLK 160
I ++G R N F G + +
Sbjct: 135 PNIKFLNAINLNSGFIGKT-------DRANGYNEYLFRGNIDFMN 172
>1za4_A Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cell adhesion; HET:
SGN; 1.90A {Homo sapiens} SCOP: b.29.1.4 PDB: 2ouh_A
2ouj_A
Length = 251
Score = 44.0 bits (103), Expect = 3e-05
Identities = 25/141 (17%), Positives = 53/141 (37%), Gaps = 10/141 (7%)
Query: 23 RFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQ---IHYSFNCGSGPMALS 79
R + F ++ + G + + H V V +G+ + S +S
Sbjct: 69 RTEKGFLLLASLRQMKKTRGTLLALERKDHSGQVFSVVSNGKAGTLDLSLTVQGKQHVVS 128
Query: 80 SGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFGPFYLGGVPLNTS 139
+ L+ G+W ++ Q+ +L ID + + + L++ + +
Sbjct: 129 VEEALLATGQWKSITLFVQEDRAQLYIDCEKM-------ENAELDVPIQSVFTRDLASIA 181
Query: 140 TLVRGNLGLNDTFVGCLRNLK 160
L G+ND F G L+N++
Sbjct: 182 RLRIAKGGVNDNFQGVLQNVR 202
Score = 31.3 bits (70), Expect = 0.35
Identities = 18/120 (15%), Positives = 38/120 (31%), Gaps = 3/120 (2%)
Query: 196 KGVEQFRVGREMELKMDVKP-RNISGLLLSVHSKKDY-FILQMIDGSVKATVD-NGKGPI 252
V+ R + L ++ + G LL++ K + ++ T+D +
Sbjct: 63 DLVDAVRTEKGFLLLASLRQMKKTRGTLLALERKDHSGQVFSVVSNGKAGTLDLSLTVQG 122
Query: 253 SAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSETDTNNAVFIG 312
+ GQW +I ++ + +D + L P S + A
Sbjct: 123 KQHVVSVEEALLATGQWKSITLFVQEDRAQLYIDCEKMENAELDVPIQSVFTRDLASIAR 182
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 0.002
Identities = 45/375 (12%), Positives = 98/375 (26%), Gaps = 93/375 (24%)
Query: 17 YPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHYSFNC----G 72
Y I F++ F + D K + I ++ HI + F
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI--IMSKDAVSGTLRLFWTLLSKQ 75
Query: 73 SGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIF----GP 128
+ + L ++ ++ L +K E + S ++
Sbjct: 76 EEMVQKFVEEVLRINYKF---------LMSPIKT--------EQRQPSMMTRMYIEQRDR 118
Query: 129 FYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNKLVQDKHTSSGVIPCSDKTESGVFF 188
Y + R L+ L++ + V
Sbjct: 119 LYNDNQVFAKYNVSRLQP---------YLKLR--QALLELRP------------AKNVLI 155
Query: 189 YNSGGYVKGV------EQFRVGREMELK---MDVKPRNISGLL------LSVHSKKDYFI 233
G K ++V +M+ K +++K N + L ++
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 234 LQMIDGSVKATVDNGKGPISAIYTPSDPYFFC----DGQWH------------TIVAIKT 277
++K + + + + + S PY C + ++ +
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLK-SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274
Query: 278 KNVISVAVDSMTTDKPGLGPPGSSETDTNN----AVFIGGHPF-LSLSSKKSGPRTKRRS 332
K V + + TT L + T ++ P L + PR
Sbjct: 275 KQVTDF-LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR---- 329
Query: 333 VFLINANCKAVHPLT 347
+ +I + + T
Sbjct: 330 LSIIAESIR-DGLAT 343
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.022
Identities = 70/419 (16%), Positives = 123/419 (29%), Gaps = 142/419 (33%)
Query: 12 SSR--------IEY----PTITG----RFKNKFDFSIDIKTTS-----EQDGIIFYVADV 50
S+R +E+ PT + + + +F+ + T E V
Sbjct: 5 STRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG-- 62
Query: 51 KHIDYVALYVKDGQIHYSFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQV 110
K + YV+ V+ ++ G L L L EF L G D
Sbjct: 63 KFLGYVSSLVEPSKV------GQFDQVL----NLCLT------EFENCYLEGN---DIHA 103
Query: 111 VA----EGESKGSSKTLNIFGPFY----LGGVPLN---TSTLVR----GNL--------- 146
+A + KT + + + P + S L R GN
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ 163
Query: 147 GLNDTFVGCLRNL-KSNNKLVQD--KHTSSGVIPCSDKTESGVFFYNSGGYVKGVEQFRV 203
G D + LR+L ++ + LV D K ++ + T + G +
Sbjct: 164 GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG--------LNI 215
Query: 204 GREMELKMDVKPRN-------IS----GLLLSVHSKKDYFILQMIDG--------SVKAT 244
+E P IS G++ H Y + + G +K
Sbjct: 216 LEWLE-NPSNTPDKDYLLSIPISCPLIGVIQLAH----YVVTAKLLGFTPGELRSYLKGA 270
Query: 245 VDNGKGPISAIY---TPSDPYFFCDGQ-------WHTIVAIKTKNVISVAVDSMTTD--K 292
+ +G ++A+ T S FF + + + + S+ S+ D +
Sbjct: 271 TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP-PSILEDSLE 329
Query: 293 PGLGPPGSSETDTNNAVFIGGHPFLS---LSSK----------KSGPRTKRRSVFLINA 338
G P P LS L+ + P K+ + L+N
Sbjct: 330 NNEGVPS---------------PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG 373
>2uur_A Collagen alpha-1(IX) chain; glycoprotein, hydroxylation, structural
protein, NC4, collagen IX, polymorphism, extracellular
matrix; 1.8A {Homo sapiens}
Length = 245
Score = 34.8 bits (79), Expect = 0.028
Identities = 24/148 (16%), Positives = 54/148 (36%), Gaps = 13/148 (8%)
Query: 10 SKSSRIEYPTITGRFKNKF--DFSIDI-----KTTSEQDGIIFYVADVKHIDYVALYVKD 62
+ PT + + ++S +T +++ I+ + D + V + +
Sbjct: 67 GNNVDFRIPTRN-LYPSGLPEEYSFLTTFRMTGSTLKKNWNIWQIQDSSGKEQVGIKING 125
Query: 63 GQ--IHYSFNCGSGPMALSSGDKL--ILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKG 118
+ +S+ G + ++ L + D +WH + ++ S L +D + K
Sbjct: 126 QTQSVVFSYKGLDGSLQTAAFSNLSSLFDSQWHKIMIGVERSSATLFVDCNRIESLPIKP 185
Query: 119 SSKTLNIFGPFYLGGVPLNTSTLVRGNL 146
++I G LG + N V L
Sbjct: 186 RG-PIDIDGFAVLGKLADNPQVSVPFEL 212
Score = 29.8 bits (66), Expect = 1.2
Identities = 15/108 (13%), Positives = 33/108 (30%), Gaps = 7/108 (6%)
Query: 209 LKMDVKPRNISGLLLSVHSKKDYFILQMIDGSVKATVD----NGKGPISAIYTPSDPYFF 264
+M + + + + + +V G + + F
Sbjct: 94 FRMTGSTLKKNWNIWQIQDSSGKEQVGIKINGQTQSVVFSYKGLDGSLQTAAFSNLSSLF 153
Query: 265 CDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSETDTNNAVFIG 312
D QWH I+ ++ ++ VD + + P G D + +G
Sbjct: 154 -DSQWHKIMIGVERSSATLFVDCNRIESLPIKPRGP--IDIDGFAVLG 198
>4azz_A Levanase; hydrolase; 1.70A {Bacillus subtilis}
Length = 172
Score = 34.1 bits (78), Expect = 0.032
Identities = 10/88 (11%), Positives = 30/88 (34%), Gaps = 1/88 (1%)
Query: 27 KFDFSIDIKTTSEQDGIIF-YVADVKHIDYVALYVKDGQIHYSFNCGSGPMALSSGDKLI 85
+ D +I ++F D K+ + K + + ++ I
Sbjct: 48 ESDITIKDGNGRGAGALMFRSDKDAKNGYLANVDAKHDLVKFFKFENGAASVIAEYKTPI 107
Query: 86 LDGEWHTVEFSRQQLSGKLKIDGQVVAE 113
+ + ++ + K+ +D ++V +
Sbjct: 108 DVNKKYHLKTEAEGDRFKIYLDDRLVID 135
>3hdf_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosid hydrolase,
late protein; 1.70A {Enterobacteria phage P21}
Length = 140
Score = 32.6 bits (74), Expect = 0.065
Identities = 10/75 (13%), Positives = 25/75 (33%), Gaps = 4/75 (5%)
Query: 40 QDGIIFYVADVKHIDYVAL--YVKDGQIHYSFNCGSGPMALSSGDKLILDGEWHTV--EF 95
+ + V + ++ + +N G+G S+ + I G+ +
Sbjct: 51 NKDLATVARQINPYIKVDIPETMRGALYSFVYNVGAGNFRTSTLLRKINQGDIKGACDQL 110
Query: 96 SRQQLSGKLKIDGQV 110
R +G + G +
Sbjct: 111 RRWTYAGGKQWKGLM 125
>4dqa_A Uncharacterized protein; two domains structure, DUF 1735,
laminin_G_3 concanavalin A- lectin/glucanases
superfamily domain; HET: MSE; 1.50A {Bacteroides ovatus}
Length = 355
Score = 32.4 bits (73), Expect = 0.22
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 3/72 (4%)
Query: 63 GQIHYSFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLK--IDGQVVAEGESKGSS 120
G + +G +L W+ V + Q +GK ++G+ A +
Sbjct: 197 GITPKDYLEVAGGQNYRVTKP-LLTNRWYHVALTYDQPTGKTGIYVNGEKWAGSDWGIDG 255
Query: 121 KTLNIFGPFYLG 132
N FY+G
Sbjct: 256 FDPNSDMGFYIG 267
>3hde_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosidase,
hydrolase, late protein; 1.95A {Enterobacteria phage
P21}
Length = 165
Score = 31.6 bits (71), Expect = 0.23
Identities = 10/72 (13%), Positives = 25/72 (34%), Gaps = 4/72 (5%)
Query: 43 IIFYVADVKHIDYVAL--YVKDGQIHYSFNCGSGPMALSSGDKLILDGEWHTV--EFSRQ 98
+ + V + ++ + +N G+G S+ + I G+ + R
Sbjct: 79 LATVARQINPYIKVDIPETMRGALYSFVYNVGAGNFRTSTLLRKINQGDIKGACDQLRRW 138
Query: 99 QLSGKLKIDGQV 110
+G + G +
Sbjct: 139 TYAGGKQWKGLM 150
>2anv_A Lysozyme; direct methods, lanthinide binding sites, hydrolase;
1.04A {Enterobacteria phage P22} PDB: 2anx_A
Length = 146
Score = 29.8 bits (67), Expect = 0.71
Identities = 19/107 (17%), Positives = 32/107 (29%), Gaps = 14/107 (13%)
Query: 17 YPTI----TGRFKNKFDFSIDIKTTSEQDG-----IIFYVADVKHIDYVAL--YVKDGQI 65
PTI TG+ S T + + + + + V L D
Sbjct: 29 IPTIGVGHTGKVDGNSVASGMTITAEKSSELLKEDLQWVEDAISSLVRVPLNQNQYDAMC 88
Query: 66 HYSFNCGSGPMALSSGDKLILDGEWHTV--EFSRQQLSGKLKIDGQV 110
FN G A S+ + + + F + +GK D +
Sbjct: 89 SLIFNIGKSAFAGSTVLRQLNLKNYQAAADAFLLWKKAGK-DPDILL 134
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold,
structural genomics, joint for structural genomics,
JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Length = 97
Score = 28.3 bits (63), Expect = 1.1
Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 12/76 (15%)
Query: 199 EQFRVGREMELKMDVKPRNISGLLLSVH-SKKDYFILQMIDGSVKATVDNGKGPISAIYT 257
E+ +V + P G H DY ++ M G ++ +G +++ T
Sbjct: 16 ERVKV-----TEWRFPP----GGETGWHRHSMDYVVVPMTTG--PLLLETPEGSVTSQLT 64
Query: 258 PSDPYFFCDGQWHTIV 273
Y +G H ++
Sbjct: 65 RGVSYTRPEGVEHNVI 80
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix,
ARAC family, activator, DNA-binding transcription,
transcription regulation; HET: PAM; 1.90A {Vibrio
cholerae}
Length = 276
Score = 28.7 bits (64), Expect = 2.9
Identities = 9/75 (12%), Positives = 22/75 (29%), Gaps = 3/75 (4%)
Query: 26 NKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHYSFNCGSGPMALSSGDKLI 85
K F ++ S+ D + ++ DY ++ G ++S ++
Sbjct: 3 GKKSFQTNVYRMSKFDT--YIFNNLYINDYKMFWIDSGIAKLIDKNCLVSYEINSSSIIL 60
Query: 86 LD-GEWHTVEFSRQQ 99
L +
Sbjct: 61 LKKNSIQRFSLTSLS 75
>2ozi_A Hypothetical protein RPA4178; APC6210, putative protein RPA4178,
structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris
CGA009} PDB: 3lag_A*
Length = 98
Score = 27.2 bits (60), Expect = 3.3
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 230 DYFILQMIDGSVKATVDNGKGPISAIYTPSDPYFFCDGQWHTIV 273
DY ++ M DG + +G ++ Y G H +
Sbjct: 38 DYVVVPMADGEMTIVAPDGTRSLAQ-LKTGRSYARKAGVQHDVR 80
>2gll_A FABZ, (3R)-hydroxymyristoyl-acyl carrier protein dehydratase;
lyase; 2.20A {Helicobacter pylori} PDB: 2glm_A* 2glp_A*
2glv_A 3dp1_A* 3cf8_A* 3cf9_A* 3d04_A* 3doy_A* 3doz_A*
3dp0_A* 3b7j_A* 3dp2_A* 3dp3_A* 3ed0_A*
Length = 171
Score = 28.0 bits (63), Expect = 3.5
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 10/40 (25%)
Query: 81 GDKLILDGEWHTVEFSRQ-----QLSGKLKIDGQVVAEGE 115
GD+L +E + Q+ G ++DG+VVAE E
Sbjct: 128 GDRLEYH-----LEVLKHKGMIWQVGGTAQVDGKVVAEAE 162
>3d6x_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; FABZ, hot DOG
fold, dehydratase, lipid biosynthesis, lipid synthesis,
lyase; HET: MSE; 2.59A {Campylobacter jejuni subsp}
Length = 146
Score = 27.5 bits (62), Expect = 4.4
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 10/40 (25%)
Query: 81 GDKLILDGEWHTVEFSRQ-----QLSGKLKIDGQVVAEGE 115
GD+L + + + G+ +DG +VAE E
Sbjct: 104 GDRLDYE-----MSVVKNRGNMWIFKGQAFVDGNLVAEAE 138
>2wss_S ATP synthase subunit O, mitochondrial; hydrogen ION transport, ATP
synthesis, phosphoprotein, UBL conjugation, transit
peptide; HET: ANP ADP; 3.20A {Bos taurus} PDB: 2bo5_A
2jmx_A
Length = 190
Score = 27.2 bits (61), Expect = 5.5
Identities = 8/45 (17%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 199 EQFRVGREMELKMDVKPRNISGLLLSVHSKKDYFILQMIDGSVKA 243
G+ ++L++ + P + G+++ + K +D S K
Sbjct: 140 SFLSKGQVLKLEVKIDPSIMGGMIVRIGEK-------YVDMSAKT 177
>3s5q_A Putative glycosylhydrolase; concanavalin A-like lectins/glucanases,
structural genomics, center for structural genomics,
JCSG; 1.85A {Parabacteroides distasonis}
Length = 214
Score = 27.6 bits (61), Expect = 5.8
Identities = 13/103 (12%), Positives = 36/103 (34%), Gaps = 12/103 (11%)
Query: 24 FKNKFDFSIDIKTTSEQD-GIIFYVADVKH----------IDYVALYVKDGQIHYSFNCG 72
++N F ++ KT + G++ Y D + D + ++
Sbjct: 59 YEN-FILDLEFKTDVNTNSGVVIYCTDKGNWIPSSIEIQIADDHHPEWQSYPEYWRCGSI 117
Query: 73 SGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGE 115
G + + GEW+ + + + ++++G+ +
Sbjct: 118 YGHKGANEQLVVKKPGEWNRMIITAKGQQIDIELNGKHIVSAN 160
>2ews_A Pantothenate kinase; PANK, structural genomics, structural
genomics consortium, S transferase; HET: ANP; 2.05A
{Staphylococcus aureus subsp} SCOP: c.55.1.14
Length = 287
Score = 27.4 bits (60), Expect = 7.6
Identities = 12/77 (15%), Positives = 22/77 (28%), Gaps = 6/77 (7%)
Query: 10 SKSSRIEYPTITGRFKNKFDFSIDIKTT------SEQDGIIFYVADVKHIDYVALYVKDG 63
S + + + ID T + + F K+ID V ++
Sbjct: 3 SSHHHHHHSSGLVPRGSHMKVGIDAGGTLIKIVQEQDNQRTFKTELTKNIDQVVEWLNQQ 62
Query: 64 QIHYSFNCGSGPMALSS 80
QI G ++
Sbjct: 63 QIEKLCLTGGNAGVIAE 79
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.399
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,143,040
Number of extensions: 300619
Number of successful extensions: 854
Number of sequences better than 10.0: 1
Number of HSP's gapped: 722
Number of HSP's successfully gapped: 73
Length of query: 348
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 254
Effective length of database: 4,077,219
Effective search space: 1035613626
Effective search space used: 1035613626
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.6 bits)