RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12396
(348 letters)
>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 189
Score = 110 bits (276), Expect = 8e-30
Identities = 47/174 (27%), Positives = 88/174 (50%), Gaps = 7/174 (4%)
Query: 8 GTSKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHY 67
G S++S I + KN+ ++++T +E G++FY+A + H D+ + +++G ++
Sbjct: 20 GLSRNSHIAIAFDDTKVKNRLTIELEVRTEAE-SGLLFYMARINHADFATVQLRNGFPYF 78
Query: 68 SFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFG 127
S++ GSG + K+ DG+WH ++ R + G L +D + S + L++ G
Sbjct: 79 SYDLGSGDTSTMIPTKIN-DGQWHKIKIVRVKQEGILYVDDASS-QTISPKKADILDVVG 136
Query: 128 PFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNKLV--QDKHTSSGVIPCS 179
Y+GG+P+N +T G + + GC+RNL V +S V C
Sbjct: 137 ILYVGGLPINYTTRRIGP--VTYSLDGCVRNLHMEQAPVDLDQPTSSFHVGTCF 188
Score = 64.1 bits (155), Expect = 7e-13
Identities = 32/161 (19%), Positives = 66/161 (40%), Gaps = 15/161 (9%)
Query: 177 PCSDKTESGV------FFYNSGGYVK-GVEQFRVGREMELKMDVKPRNISGLLLSV--HS 227
PC ++E + F + ++ + +V + ++++V+ SGLL + +
Sbjct: 3 PCVAESEPALLTGSKQFGLSRNSHIAIAFDDTKVKNRLTIELEVRTEAESGLLFYMARIN 62
Query: 228 KKDYFILQMIDGSVKATVDNGKGPISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDS 287
D+ +Q+ +G + D G G S + P DGQWH I ++ K + VD
Sbjct: 63 HADFATVQLRNGFPYFSYDLGSGDTSTMI----PTKINDGQWHKIKIVRVKQEGILYVDD 118
Query: 288 MTTDKPGLGPPGSSETDTNNAVFIGGHPFLSLSSKKSGPRT 328
++ + P + D +++GG P + +
Sbjct: 119 ASS--QTISPKKADILDVVGILYVGGLPINYTTRRIGPVTY 157
>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 170
Score = 102 bits (255), Expect = 6e-27
Identities = 38/165 (23%), Positives = 65/165 (39%), Gaps = 10/165 (6%)
Query: 15 IEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHYSFNCGSG 74
I T K S +++T +G+IFY D+ L ++DG+ +
Sbjct: 15 IAVMTFDLTKITKTSSSFEVRTWDP-EGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWA 73
Query: 75 PMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFGPFYLGGV 134
+ + +G + + DG WH VE + S L++DG+ V + + + LGG+
Sbjct: 74 QLTVGAGPR-LDDGRWHQVEVKMEGDSVLLEVDGEEV----LRLRQVSGHPIMRIALGGL 128
Query: 135 PLNTSTLVRGNLGLNDTFVGCLRNLKSNNKLVQ-DKHTSSGVIPC 178
S L L L GCLR +K + + + C
Sbjct: 129 LFPASNL---RLPLVPALDGCLRRDSWLDKQAEISASAPTSLRSC 170
Score = 54.8 bits (131), Expect = 1e-09
Identities = 18/110 (16%), Positives = 36/110 (32%), Gaps = 11/110 (10%)
Query: 209 LKMDVKPRNISGLLLSVHSK--KDYFILQMIDGSVKATVDNGKGPISAIYTPSDPYFFCD 266
+V+ + G++ + D+F+L + DG + + N T D
Sbjct: 30 SSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQ----LTVGAGPRLDD 85
Query: 267 GQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSETDTNNAVFIGGHPF 316
G+WH + + + + VD + +GG F
Sbjct: 86 GRWHQVEVKMEGDSVLLEVDGEEV-----LRLRQVSGHPIMRIALGGLLF 130
>d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 195
Score = 101 bits (252), Expect = 2e-26
Identities = 41/182 (22%), Positives = 77/182 (42%), Gaps = 7/182 (3%)
Query: 1 MSYYVIAGTSKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHI-DYVALY 59
M Y+ S + + + F + IKT + G+I + DY+AL
Sbjct: 17 MEYHNAVTKSPDALDYPAEPSEKALQSNHFELSIKTEAT-QGLILWSGKGLERSDYIALA 75
Query: 60 VKDGQIHYSFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGS 119
+ DG + ++ GS P+ L S + W ++ R Q G L++ + G S
Sbjct: 76 IVDGFVQMMYDLGSKPVVLRSTVPIN-TNHWTHIKAYRVQREGSLQVGNEAPITGSSPLG 134
Query: 120 SKTLNIFGPFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNK---LVQDKHTSSGVI 176
+ L+ G +LGG+ S + + F+GC+R++ + + LV+D + ++
Sbjct: 135 ATQLDTDGALWLGGME-RLSVAHKLPKAYSTGFIGCIRDVIVDRQELHLVEDALNNPTIL 193
Query: 177 PC 178
C
Sbjct: 194 HC 195
Score = 55.7 bits (133), Expect = 8e-10
Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 8/132 (6%)
Query: 201 FRVGREMELKMDVKPRNISGLLLSVHS---KKDYFILQMIDGSVKATVDNGKGPISAIYT 257
+ + ++ +K GL+L + DY L ++DG V+ D G P+
Sbjct: 38 EKALQSNHFELSIKTEATQGLILWSGKGLERSDYIALAIVDGFVQMMYDLGSKPVVLR-- 95
Query: 258 PSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSETDTNNAVFIGGHPFL 317
W I A + + S+ V + G P G+++ DT+ A+++GG L
Sbjct: 96 --STVPINTNHWTHIKAYRVQREGSLQVGNEAP-ITGSSPLGATQLDTDGALWLGGMERL 152
Query: 318 SLSSKKSGPRTK 329
S++ K +
Sbjct: 153 SVAHKLPKAYST 164
>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6
{Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 97.2 bits (241), Expect = 1e-24
Identities = 25/136 (18%), Positives = 51/136 (37%), Gaps = 8/136 (5%)
Query: 26 NKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHYSFNCGSGPMALSSGDKLI 85
+ D +T +GI+ + + ++ L ++ G++ SSG +I
Sbjct: 57 TRLVAEFDFRTFDP-EGILLFAGGHQDSTWIVLALRAGRLELQLRYNGVGRVTSSG-PVI 114
Query: 86 LDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSS---KTLNIFGPFYLGGVPLNTSTLV 142
G W T+ + +K++ V + G + +GG+P + LV
Sbjct: 115 NHGMWQTISVEELARNLVIKVNRDAVMKIAVAGDLFQPERGLYHLNLTVGGIPFHEKDLV 174
Query: 143 RGNLGLNDTFVGCLRN 158
+N GC+R+
Sbjct: 175 ---QPINPRLDGCMRS 187
Score = 55.6 bits (133), Expect = 7e-10
Identities = 25/164 (15%), Positives = 52/164 (31%), Gaps = 15/164 (9%)
Query: 164 KLVQDKHTSSGVIPC-------SDKTESGVFFYNSGGYVKGVEQFRVGREMELKMDVKPR 216
KL QD T ++PC S K+ ++ ++ + + + D +
Sbjct: 9 KLSQDMDTCEDILPCVPFSVAKSVKSLYLGRMFSGTPVIRLRFKRLQPTRLVAEFDFRTF 68
Query: 217 NISGLLLSVHS--KKDYFILQMIDGSVKATVDNGKGPISAIYTPSDPYFFCDGQWHTIVA 274
+ G+LL + +L + G ++ + P G W TI
Sbjct: 69 DPEGILLFAGGHQDSTWIVLALRAGRLELQLRYNGVGRVTSSGP----VINHGMWQTISV 124
Query: 275 IKTKNVISVAVDS--MTTDKPGLGPPGSSETDTNNAVFIGGHPF 316
+ + + V+ + + + +GG PF
Sbjct: 125 EELARNLVIKVNRDAVMKIAVAGDLFQPERGLYHLNLTVGGIPF 168
>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 185
Score = 95.3 bits (236), Expect = 5e-24
Identities = 50/135 (37%), Positives = 74/135 (54%), Gaps = 3/135 (2%)
Query: 182 TESGVFFYNSGGYVKGVEQFRVGREMELKMDVKPRNISGLLLSVHSKK-DYFILQMIDGS 240
ESG +F + G+ K V F+VG ++ ++ + + +G+LL V S+K D ++MID
Sbjct: 2 AESGTYF-DGTGFAKAVGGFKVGLDLLVEFEFRTTRPTGVLLGVSSQKMDGMGIEMIDEK 60
Query: 241 VKATVDNGKGPISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGS 300
+ VDNG G +AIY P C+GQWH + A K KN + + VD D S
Sbjct: 61 LMFHVDNGAGRFTAIYDAEIPGHMCNGQWHKVTAKKIKNRLELVVDGNQVD-AQSPNSAS 119
Query: 301 SETDTNNAVFIGGHP 315
+ DTN+ VF+GG P
Sbjct: 120 TSADTNDPVFVGGFP 134
Score = 91.1 bits (225), Expect = 2e-22
Identities = 31/149 (20%), Positives = 62/149 (41%), Gaps = 8/149 (5%)
Query: 23 RFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHYSFNCGSGPMAL---S 79
+ + +TT G++ V+ K D + + + D ++ + + G+G +
Sbjct: 21 KVGLDLLVEFEFRTTRP-TGVLLGVSSQKM-DGMGIEMIDEKLMFHVDNGAGRFTAIYDA 78
Query: 80 SGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFGPFYLGGVPLNTS 139
+ +G+WH V + + +L +DG V +S + + P ++GG P
Sbjct: 79 EIPGHMCNGQWHKVTAKKIKNRLELVVDGNQVDAQSPNSASTSADTNDPVFVGGFP---G 135
Query: 140 TLVRGNLGLNDTFVGCLRNLKSNNKLVQD 168
L + L N F GC+R+LK +
Sbjct: 136 GLNQFGLTTNIRFRGCIRSLKLTKGTGKP 164
>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 177
Score = 79.1 bits (194), Expect = 3e-18
Identities = 36/167 (21%), Positives = 63/167 (37%), Gaps = 15/167 (8%)
Query: 4 YVIAGTSKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKH-IDYVALYVKD 62
Y+ + ++P +I T + + ++ V DY+ L++
Sbjct: 6 YIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQK-EAVLVRVDSSSGLGDYLELHIHQ 64
Query: 63 GQIHYSFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKT 122
G+I FN G+ +A+ + +I DG++H V F+R + L++D V E G T
Sbjct: 65 GKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLT 124
Query: 123 L-NIFGPFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNKLVQD 168
+ N +GG F G L L N V +
Sbjct: 125 IFNSQATIIIGGKEQGQP------------FQGQLSGLYYNGLKVLN 159
Score = 54.1 bits (129), Expect = 2e-09
Identities = 23/134 (17%), Positives = 45/134 (33%), Gaps = 9/134 (6%)
Query: 188 FYNSGGYVK---GVEQFRVGREMELKMDVKPRNISGLLLSVHS---KKDYFILQMIDGSV 241
F GG + R L + +L+ V S DY L + G +
Sbjct: 8 FSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKI 67
Query: 242 KATVDNGKGPISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSS 301
+ G I+ + + DG++H + ++ ++ VDS + +
Sbjct: 68 GVKFNVGTDDIAIEESNAI---INDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLT 124
Query: 302 ETDTNNAVFIGGHP 315
++ + IGG
Sbjct: 125 IFNSQATIIIGGKE 138
>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6
{Human (Homo sapiens) [TaxId: 9606]}
Length = 218
Score = 67.3 bits (163), Expect = 1e-13
Identities = 25/172 (14%), Positives = 46/172 (26%), Gaps = 22/172 (12%)
Query: 176 IPCSDKTESGVFFYNSG--------GYVKGVEQFRVGREMELKMDVKPRNISGLLLSVHS 227
+ C TE G F+ SG E+E+ ++P +G+L ++ +
Sbjct: 8 MQCFSVTERGSFYPGSGFAFYSLDYMRTPLDVGTESTWEVEVVAHIRPAADTGVLFALWA 67
Query: 228 KKDYFILQMIDGSVKATVDNGKGPISAIYTP------SDPYFFCDGQWHTIVAIKTKNVI 281
+ + V + CDGQ H +
Sbjct: 68 PDLRAV-PLSVALVDYHSTKKLKKQLVVLAVEHTALALMEIKVCDGQEHVVTVSLRDGEA 126
Query: 282 SVAVDSMT-------TDKPGLGPPGSSETDTNNAVFIGGHPFLSLSSKKSGP 326
++ VD + F GG P + ++S
Sbjct: 127 TLEVDGTRGQSEVSAAQLQERLAVLERHLRSPVLTFAGGLPDVPVTSAPVTA 178
Score = 66.5 bits (161), Expect = 2e-13
Identities = 30/188 (15%), Positives = 61/188 (32%), Gaps = 25/188 (13%)
Query: 10 SKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHYSF 69
S + + + I+ ++ G++F + V L V H +
Sbjct: 29 SLDYMRTPLDVGTESTWEVEVVAHIRPAAD-TGVLFALWAPDL-RAVPLSVALVDYHSTK 86
Query: 70 NCGSGPMALSSG-------DKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSS-- 120
+ L+ + + DG+ H V S + L++DG S
Sbjct: 87 KLKKQLVVLAVEHTALALMEIKVCDGQEHVVTVSLRDGEATLEVDGTRGQSEVSAAQLQE 146
Query: 121 ------KTLNIFGPFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNKLV---QDKHT 171
+ L + GG+P T + + + GC+ L+ N +L+ + +
Sbjct: 147 RLAVLERHLRSPVLTFAGGLPDVPVT----SAPVTAFYRGCM-TLEVNRRLLDLDEAAYK 201
Query: 172 SSGVIPCS 179
S + S
Sbjct: 202 HSDITAHS 209
>d2erfa1 b.29.1.4 (A:10-215) Thrombospondin 1 N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 206
Score = 53.2 bits (127), Expect = 6e-09
Identities = 26/162 (16%), Positives = 55/162 (33%), Gaps = 13/162 (8%)
Query: 2 SYYVIAGTSKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVK 61
+ K + R + F ++ + G + + H V V
Sbjct: 38 NLIPPVPDDKFQDLVDA---VRTEKGFLLLASLRQMKKTRGTLLALERKDHSGQVFSVVS 94
Query: 62 DGQ---IHYSFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKG 118
+G+ + S +S + L+ G+W ++ Q+ +L ID + + E
Sbjct: 95 NGKAGTLDLSLTVQGKQHVVSVEEALLATGQWKSITLFVQEDRAQLYIDCEKMENAELDV 154
Query: 119 SSKTLNIFGPFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLK 160
+++ + L G+ND F G L+N++
Sbjct: 155 PIQSVFTRDLASIAR-------LRIAKGGVNDNFQGVLQNVR 189
Score = 32.0 bits (72), Expect = 0.069
Identities = 15/104 (14%), Positives = 31/104 (29%), Gaps = 5/104 (4%)
Query: 213 VKP-RNISGLLLSVHSKKD---YFILQMIDGSVKATVDNGKGPISAIYTPSDPYFFCDGQ 268
++ + G LL++ K F + +G + + GQ
Sbjct: 67 LRQMKKTRGTLLALERKDHSGQVFSVV-SNGKAGTLDLSLTVQGKQHVVSVEEALLATGQ 125
Query: 269 WHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSETDTNNAVFIG 312
W +I ++ + +D + L P S + A
Sbjct: 126 WKSITLFVQEDRAQLYIDCEKMENAELDVPIQSVFTRDLASIAR 169
>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis
[TaxId: 1423]}
Length = 180
Score = 29.0 bits (64), Expect = 0.57
Identities = 7/24 (29%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 269 WH--TIVAIKTKNVISVAVDSMTT 290
+H TI A++ K +++ D T
Sbjct: 3 FHATTIFAVQHKGRSAMSGDGQVT 26
>d1vcta2 d.286.1.1 (A:108-201) Hypothetical protein PH0236,
C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 94
Score = 27.7 bits (61), Expect = 0.64
Identities = 7/54 (12%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 55 YVALYVKDGQIHYSFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDG 108
++ + + + + + +GD LI G +++ ++ G +++ G
Sbjct: 44 WIIAVRRGKRWIFG---PNENFKIRAGDVLIGRGTRTSIDHLKEIARGAIRVIG 94
>d1u1za_ d.38.1.6 (A:) (3R)-hydroxymyristoyl ACP dehydrase FabZ
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 145
Score = 28.4 bits (63), Expect = 0.81
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 81 GDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGE 115
GD+L L ++ +V+ S + +D + V E
Sbjct: 104 GDQLQLHAKFISVKRSIWKFDCHATVDDKPVCSAE 138
>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 204
Score = 28.6 bits (63), Expect = 1.0
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 259 SDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKP 293
SDP G +VA+ K+ +++A D +
Sbjct: 1 SDPSSINGG---IVVAMTGKDCVAIACDLRLGSQS 32
>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase
Fom4, C-terminal domain {Streptomyces wedmorensis
[TaxId: 43759]}
Length = 122
Score = 27.6 bits (61), Expect = 1.1
Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 2/75 (2%)
Query: 202 RVGREME-LKMDVKPRNISGLLLSVHSKKDYFILQMIDGSVKATVDNGKGPISAIYTPSD 260
+ + L +DV N + + F+ +++G + + + P A+
Sbjct: 36 KRAPSLVPLVVDVLTDNPDDAKFNSGHAGNEFLF-VLEGEIHMKWGDKENPKEALLPTGA 94
Query: 261 PYFFCDGQWHTIVAI 275
F + H A
Sbjct: 95 SMFVEEHVPHAFTAA 109
>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 224
Score = 27.9 bits (61), Expect = 1.7
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 271 TIVAIKTKNVISVAVDSMTTDKP 293
TIVA+ K + +A D T
Sbjct: 2 TIVALTYKGGVLLAGDRRATQGN 24
>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit
(non-catalytic) {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 221
Score = 27.4 bits (60), Expect = 2.5
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 271 TIVAIKTKNVISVAVDSMTTDK 292
T + +K N + + D +
Sbjct: 24 TALGMKFANGVLLISDKKVRSR 45
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 27.3 bits (60), Expect = 2.7
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 271 TIVAIKTKNVISVAVDSMTTDK 292
T V ++ ++++ + V+ + K
Sbjct: 30 TAVGVRGRDIVVLGVEKKSVAK 51
>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 198
Score = 27.0 bits (59), Expect = 2.7
Identities = 4/23 (17%), Positives = 10/23 (43%)
Query: 271 TIVAIKTKNVISVAVDSMTTDKP 293
I+ I+ ++ + +A T
Sbjct: 3 IILGIRVQDSVILASSKAVTRGI 25
>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 242
Score = 27.4 bits (60), Expect = 2.7
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 271 TIVAIKTKNVISVAVDSMTTDK 292
T + I TK + + V+ T
Sbjct: 28 TAIGIATKEGVVLGVEKRATSP 49
>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 220
Score = 27.0 bits (59), Expect = 2.9
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 271 TIVAIKTKNVISVAVDSMTTDKP 293
TI + K+ I + D+ T+
Sbjct: 2 TIAGVVYKDGIVLGADTRATEGM 24
>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 27.0 bits (59), Expect = 2.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 271 TIVAIKTKNVISVAVDSMTTDKP 293
TIV +K N + +A D+ +T P
Sbjct: 2 TIVGVKFNNGVVIAADTRSTQGP 24
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 27.0 bits (59), Expect = 3.0
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 271 TIVAIKTKNVISVAVDSMTTDK 292
T + I + + +A + K
Sbjct: 32 TCLGILANDGVLLAAERRNIHK 53
>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 199
Score = 26.7 bits (58), Expect = 3.2
Identities = 4/23 (17%), Positives = 10/23 (43%)
Query: 271 TIVAIKTKNVISVAVDSMTTDKP 293
++ I+ + + VA D +
Sbjct: 3 YLIGIQGPDYVLVASDRVAASNI 25
>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 250
Score = 27.0 bits (59), Expect = 3.5
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 271 TIVAIKTKNVISVAVDSMTTDK 292
T + IK N + +A + ++
Sbjct: 33 TSLGIKATNGVVIATEKKSSSP 54
>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 201
Score = 26.6 bits (58), Expect = 3.5
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 271 TIVAIKTKNVISVAVDSMTTDKP 293
T +A K ++ + VA DS T
Sbjct: 2 TTLAFKFRHGVIVAADSRATAGA 24
>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae
[TaxId: 727]}
Length = 164
Score = 26.3 bits (57), Expect = 3.7
Identities = 22/139 (15%), Positives = 38/139 (27%), Gaps = 10/139 (7%)
Query: 214 KPRNISGLLLSVHSKKDYFILQMIDGS-VKATVDNGKGPISAIYTPSDPYFFCDGQWHTI 272
P + G V + FIL D + V K PS C
Sbjct: 7 NPIEVGGHFPQVGEIVENFILVGNDLADVALNDFASK-RKVLNIFPSIDTGVCATSVRKF 65
Query: 273 VAIKTKNVISVAVDSMTTDKPGLGPPGSSETDTNNAVFIGGHPFLSLSSK-------KSG 325
+ + + V ++ D P NA + +L S+
Sbjct: 66 -NQQAAKLSNTIVLCISADLPFAQARFCGAEGIENAKTVSTFRNHALHSQLGVDIQTGPL 124
Query: 326 PRTKRRSVFLINANCKAVH 344
R+V +++ +H
Sbjct: 125 AGLTSRAVIVLDEQNNVLH 143
>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 202
Score = 26.7 bits (58), Expect = 3.7
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 271 TIVAIKTKNVISVAVDSMTTDKP 293
T V + K+ + +A + T
Sbjct: 2 TTVGLVCKDGVVMATEKRATMGN 24
>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae
[TaxId: 727]}
Length = 173
Score = 26.3 bits (57), Expect = 3.9
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 271 TIVAIKTKNVISVAVDSMTT 290
TIV+++ + V D +
Sbjct: 2 TIVSVRRNGQVVVGGDGQVS 21
>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 233
Score = 26.6 bits (58), Expect = 3.9
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 271 TIVAIKTKNVISVAVDSMTTDK 292
V IK N + +A +
Sbjct: 33 PSVGIKAANGVVLATEKKQKSI 54
>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 213
Score = 26.8 bits (58), Expect = 4.0
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 271 TIVAIKTKNVISVAVDSMTTDKP 293
TI+AI ++ VA D+ ++
Sbjct: 11 TILAIAGEDFAIVASDTRLSEGF 33
>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima
[TaxId: 2336]}
Length = 171
Score = 26.2 bits (57), Expect = 4.2
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 271 TIVAIKTKNVISVAVDSMTT 290
TI+ ++ + D T
Sbjct: 2 TILVVRRNGQTVMGGDGQVT 21
>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 203
Score = 26.3 bits (57), Expect = 4.3
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 271 TIVAIKTKNVISVAVDSMTTDKP 293
T V I K+ + +A + T +
Sbjct: 2 TTVGITLKDAVIMATERRVTMEN 24
>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 202
Score = 26.2 bits (57), Expect = 4.5
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 271 TIVAIKTKNVISVAVDSMTTDKP 293
TI+A++ + + DS TT
Sbjct: 2 TIMAVQFDGGVVLGADSRTTTGS 24
>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 26.5 bits (58), Expect = 4.6
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 271 TIVAIKTKNVISVAVDSMTTDK 292
T + IK + + AV+ + T K
Sbjct: 32 TSIGIKCNDGVVFAVEKLITSK 53
>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 26.6 bits (58), Expect = 4.7
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 271 TIVAIKTKNVISVAVDSMTTDK 292
T + I + I +A + T
Sbjct: 33 TAIGIMASDGIVLAAERKVTST 54
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 244
Score = 26.5 bits (58), Expect = 4.8
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 269 WHTIVAIKTKNVISVAVDSMTTDK 292
T VA++ K+ + DK
Sbjct: 35 GLTSVAVRGKDCAVIVTQKKVPDK 58
>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 243
Score = 26.5 bits (58), Expect = 4.9
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 271 TIVAIKTKNVISVAVDSMTTDK 292
T + IK K + + D K
Sbjct: 33 TAIGIKCKEGVILIADKRVGSK 54
>d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris
[TaxId: 2026]}
Length = 279
Score = 26.2 bits (56), Expect = 5.5
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
Query: 256 YTPSDPYFFCDGQWHTIVAIK 276
YTP+DPYF + + I+
Sbjct: 1 YTPNDPYF--SSRQYGPQKIQ 19
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 234
Score = 26.1 bits (57), Expect = 5.6
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 271 TIVAIKTKNVISVAVDSMTTDK 292
T + I+T + +AV+ T
Sbjct: 29 TAIGIQTSEGVCLAVEKRITSP 50
>d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp.,
AK.1 [TaxId: 1409]}
Length = 280
Score = 26.1 bits (56), Expect = 6.4
Identities = 5/15 (33%), Positives = 9/15 (60%), Gaps = 1/15 (6%)
Query: 256 YTPSDPYFFCDGQWH 270
+TP+D Y+ Q+
Sbjct: 1 WTPNDTYYQ-GYQYG 14
>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 205
Score = 25.9 bits (56), Expect = 6.4
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 271 TIVAIKTKNVISVAVDSMTT 290
+I+A+ K+ + + DS TT
Sbjct: 11 SIMAVTFKDGVILGADSRTT 30
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 241
Score = 26.2 bits (57), Expect = 6.8
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 271 TIVAIKTKNVISVAVDSMTTDK 292
V +K KN + + + +T K
Sbjct: 30 CAVGVKGKNCVVLGCERRSTLK 51
>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 25.9 bits (56), Expect = 6.9
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 271 TIVAIKTKNVISVAVDSMTTDKP 293
T +A + + I VAVDS T
Sbjct: 2 TTLAFRFQGGIIVAVDSRATAGN 24
>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 25.8 bits (56), Expect = 7.0
Identities = 2/22 (9%), Positives = 7/22 (31%)
Query: 271 TIVAIKTKNVISVAVDSMTTDK 292
V +++ + D+
Sbjct: 33 VTVGLRSNTHAVLVALKRNADE 54
>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 217
Score = 25.5 bits (55), Expect = 8.5
Identities = 3/20 (15%), Positives = 12/20 (60%)
Query: 271 TIVAIKTKNVISVAVDSMTT 290
+++ +K + + +A D + +
Sbjct: 10 SVLGVKFEGGVVIAADMLGS 29
>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 25.5 bits (55), Expect = 8.9
Identities = 4/20 (20%), Positives = 14/20 (70%)
Query: 271 TIVAIKTKNVISVAVDSMTT 290
+++++K N + +A D++ +
Sbjct: 10 SVISMKYDNGVIIAADNLGS 29
>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 227
Score = 25.4 bits (55), Expect = 9.2
Identities = 2/21 (9%), Positives = 11/21 (52%)
Query: 271 TIVAIKTKNVISVAVDSMTTD 291
++V + ++ + ++ +T
Sbjct: 21 SVVVLTFRDGVLFVAENPSTA 41
>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 25.5 bits (55), Expect = 9.3
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 271 TIVAIKTKNVISVAVDSMTTDK 292
TI+ I ++ +A D+
Sbjct: 11 TILGIAGEDFAVLAGDTRNITD 32
>d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 334
Score = 25.5 bits (54), Expect = 9.8
Identities = 6/15 (40%), Positives = 8/15 (53%), Gaps = 2/15 (13%)
Query: 256 YTPSDPYFFCDGQWH 270
P+DP F QW+
Sbjct: 3 QEPTDPKF--PQQWY 15
>d1epwa1 b.29.1.6 (A:862-1079) Botulinum neurotoxin {Clostridium
botulinum, serotype B [TaxId: 1491]}
Length = 218
Score = 25.3 bits (54), Expect = 9.8
Identities = 16/148 (10%), Positives = 42/148 (28%), Gaps = 17/148 (11%)
Query: 2 SYYVIAGTSKSSRIEYPTITGRFKNKFDFSID----IKTTSEQDGIIFYVADVKHIDYV- 56
+ + + + R+ DFS+ I + + I+ +
Sbjct: 36 QFKLTSSANSKIRVTQNQNIIFNSVFLDFSVSFWIRIPKYKNDGIQNYIHNEYTIINCMK 95
Query: 57 -----ALYVKDGQIHYSFNCGSGPMAL------SSGDKLILDGEWHTVEFSRQQLSGKLK 105
+ ++ +I ++ +G D W V + + K+
Sbjct: 96 NNSGWKISIRGNRIIWTLIDINGKTKSVFFEYNIREDISEYINRWFFVTITNNLNNAKIY 155
Query: 106 IDGQVVAEGESKGSSKTLNIFGPFYLGG 133
I+G++ + + K + G
Sbjct: 156 INGKLESNTDIKDIR-EVIANGEIIFKL 182
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.136 0.399
Gapped
Lambda K H
0.267 0.0493 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,254,920
Number of extensions: 57458
Number of successful extensions: 251
Number of sequences better than 10.0: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 61
Length of query: 348
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 262
Effective length of database: 1,226,816
Effective search space: 321425792
Effective search space used: 321425792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.8 bits)