BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12399
         (69 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8N3Y7|RDHE2_HUMAN Epidermal retinol dehydrogenase 2 OS=Homo sapiens GN=SDR16C5 PE=2
           SV=2
          Length = 309

 Score = 36.2 bits (82), Expect = 0.055,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 25/50 (50%)

Query: 1   MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSV 50
           +AL+FAR G  +   +I K+ NEET +M  +        Y CD    + V
Sbjct: 56  LALQFARLGSVLVLWDINKEGNEETCKMAREAGATRVHAYTCDCSQKEGV 105


>sp|Q7TQA3|RDHE2_MOUSE Epidermal retinol dehydrogenase 2 OS=Mus musculus GN=Sdr16c5 PE=2
           SV=1
          Length = 309

 Score = 35.4 bits (80), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 25/50 (50%)

Query: 1   MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSV 50
           +AL+FAR G  +   ++ K+ N+ET Q+  +        Y CD    + V
Sbjct: 56  LALQFARLGAVLVLWDVNKEANDETHQLAREAGAARVHAYTCDCSRREEV 105


>sp|P46331|YXBG_BACSU Uncharacterized oxidoreductase YxbG OS=Bacillus subtilis (strain
          168) GN=yxbG PE=3 SV=2
          Length = 273

 Score = 32.7 bits (73), Expect = 0.63,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 5  FARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSV 50
          FA +G +V   +I KD  EETV  + +   G A+ ++ DV + +SV
Sbjct: 26 FANEGARVIIGDINKDQMEETVDAIRKNG-GQAESFHLDVSDENSV 70


>sp|Q6DCT3|RD10A_XENLA Retinol dehydrogenase 10-A OS=Xenopus laevis GN=rdh10-a PE=2 SV=1
          Length = 341

 Score = 29.3 bits (64), Expect = 7.4,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 2  ALEFARQGCKVACAEIQKDLNEETVQMVNQV 32
          ALEFAR+  ++   +I    NEET +MV  +
Sbjct: 53 ALEFARRRAQLVLWDINSQSNEETAEMVRNI 83


>sp|Q5XGF7|RDH10_XENTR Retinol dehydrogenase 10 OS=Xenopus tropicalis GN=rdh10 PE=2 SV=1
          Length = 341

 Score = 29.3 bits (64), Expect = 7.9,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 2  ALEFARQGCKVACAEIQKDLNEETVQMVNQV 32
          ALEFAR+  ++   +I    NEET +MV  +
Sbjct: 53 ALEFARRRAQLVLWDINSQSNEETAEMVRSI 83


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.138    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,135,738
Number of Sequences: 539616
Number of extensions: 703199
Number of successful extensions: 1605
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1600
Number of HSP's gapped (non-prelim): 10
length of query: 69
length of database: 191,569,459
effective HSP length: 41
effective length of query: 28
effective length of database: 169,445,203
effective search space: 4744465684
effective search space used: 4744465684
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)