RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12399
(69 letters)
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo
sapiens} SCOP: c.2.1.2
Length = 272
Score = 56.9 bits (138), Expect = 7e-12
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSV 50
A EFA+ K+ +I K EET + D N + +
Sbjct: 47 TAYEFAKLKSKLVLWDINKHGLEETAAKCKG-LGAKVHTFVVDCSNREDI 95
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 48.2 bits (115), Expect = 1e-08
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGA-AKGYYCDVGNVDSVD 51
+ + QGCKVA A+I++D ++ + + G G DV + +
Sbjct: 24 LVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFK 75
>3tjr_A Short chain dehydrogenase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium
subsp}
Length = 301
Score = 47.4 bits (113), Expect = 3e-08
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A EFAR+G ++ +++ + E+ V + A G CDV ++D +
Sbjct: 47 TATEFARRGARLVLSDVDQPALEQAVNGLRG-QGFDAHGVVCDVRHLDEMV 96
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 45.2 bits (108), Expect = 1e-07
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+A+ FA G V ++I D V + Q G A CD+ + +
Sbjct: 27 IAITFATAGASVVVSDINADAANHVVDEIQQ-LGGQAFACRCDITSEQELS 76
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics;
1.95A {Mycobacterium smegmatis}
Length = 266
Score = 44.8 bits (107), Expect = 2e-07
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A +G V ++ + ET + + G + CDV + ++VD
Sbjct: 40 ARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVD 89
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 44.8 bits (107), Expect = 2e-07
Identities = 11/51 (21%), Positives = 20/51 (39%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+A F +G +VA ++ + EET + DV + V+
Sbjct: 18 IATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVN 68
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP
COA; 1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 44.5 bits (106), Expect = 2e-07
Identities = 9/51 (17%), Positives = 13/51 (25%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+A F R GC A + + DV +V
Sbjct: 43 IAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVM 93
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 44.5 bits (106), Expect = 2e-07
Identities = 10/51 (19%), Positives = 19/51 (37%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
M + G + A + D+ + T + ++ CDV + D V
Sbjct: 42 MTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQ 92
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 44.5 bits (106), Expect = 2e-07
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGA-AKGYYCDVGNVDSVD 51
A +G KVA + + + +++ CDV + +
Sbjct: 24 AEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLR 74
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding
domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter
oxydans} SCOP: c.2.1.2
Length = 262
Score = 44.1 bits (105), Expect = 3e-07
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
AL A +G +A ++ ++ E+ V + A+ Y CDV + ++V
Sbjct: 23 TALRLAEEGTAIALLDMNREALEKAEASVRE-KGVEARSYVCDVTSEEAVI 72
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 44.0 bits (105), Expect = 3e-07
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+A +FA V E+ +D + VQ + G DV V+
Sbjct: 23 IAKKFALNDSIVVAVELLEDRLNQIVQELRG-MGKEVLGVKADVSKKKDVE 72
>3imf_A Short chain dehydrogenase; structural genomics, infectious D
center for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 43.6 bits (104), Expect = 4e-07
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
MA FA++G +V K+ EE + Q PG DV N D +
Sbjct: 22 MATRFAKEGARVVITGRTKEKLEEAKLEIEQ-FPGQILTVQMDVRNTDDIQ 71
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 43.0 bits (102), Expect = 7e-07
Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
AL A G V + EE + A G A DV + +
Sbjct: 45 ALALAADGVTVGALGRTRTEVEEVADEIVG-AGGQAIALEADVSDELQMR 93
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 43.0 bits (102), Expect = 7e-07
Identities = 13/50 (26%), Positives = 17/50 (34%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A FAR G VA A + ++ G G DV + S
Sbjct: 58 ATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCA 107
>4dqx_A Probable oxidoreductase protein; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.00A {Rhizobium etli}
Length = 277
Score = 42.9 bits (102), Expect = 7e-07
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A FA+ G V A D+NE+ V A G DV + +
Sbjct: 43 TAELFAKNGAYVVVA----DVNEDAAVRVANEIGSKAFGVRVDVSSAKDAE 89
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 42.9 bits (102), Expect = 8e-07
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGA-AKGYYCDVGNVDSVD 51
A+ A +G K++ ++ + E + V + AP A DV + V+
Sbjct: 30 AVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVE 80
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 42.9 bits (102), Expect = 8e-07
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A G +V A++ + + + V+ + DV N +SV
Sbjct: 29 CVTALAEAGARVIIADLDEAMATKAVEDLRM-EGHDVSSVVMDVTNTESVQ 78
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 42.9 bits (102), Expect = 9e-07
Identities = 15/50 (30%), Positives = 20/50 (40%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A FAR G VA A + V ++Q+ G G DV + D
Sbjct: 27 ATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCD 76
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 42.9 bits (102), Expect = 1e-06
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A AR+G V A+I + E + + G A DV + +S
Sbjct: 26 AEALAREGAAVVVADINAEAAEAVAKQIVA-DGGTAISVAVDVSDPESAK 74
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 42.6 bits (101), Expect = 1e-06
Identities = 10/51 (19%), Positives = 19/51 (37%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+A + +G V + D+ + + + CDVG+ D V
Sbjct: 49 IAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVA 99
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 42.5 bits (101), Expect = 1e-06
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A FA+ G V +++ + E + Q A G A G C+V + +
Sbjct: 29 AGTFAKAGASVVVTDLKSEGAEAVAAAIRQ-AGGKAIGLECNVTDEQHRE 77
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 42.2 bits (100), Expect = 2e-06
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A F R G KV A+I D ++ + +P +CDV + V
Sbjct: 33 AKLFVRYGAKVVIADIADDHGQKVCNNIG--SPDVISFVHCDVTKDEDVR 80
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes,
fatty acid synthesis, short-chain
dehydrogenases/reductases, structural genomics; HET:
ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2
Length = 303
Score = 41.9 bits (99), Expect = 2e-06
Identities = 8/55 (14%), Positives = 17/55 (30%), Gaps = 4/55 (7%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAP----GAAKGYYCDVGNVDSVD 51
+ E G V A + + + + P C++ N + V+
Sbjct: 34 IVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVN 88
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD;
1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 41.7 bits (99), Expect = 2e-06
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
AL + G VA A+ + +NQ A G A DV + D V
Sbjct: 19 ALRLVKDGFAVAIADYNDATAKAVASEINQ-AGGHAVAVKVDVSDRDQVF 67
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 41.7 bits (99), Expect = 2e-06
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+A A+ G V + +++ + TV + + G C VG + +
Sbjct: 30 IARRLAQDGAHVVVSSRKQENVDRTVATLQG-EGLSVTGTVCHVGKAEDRE 79
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd;
NAD(P)-binding, structural genomics, PSI-biology; HET:
MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 41.7 bits (99), Expect = 2e-06
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A + R+G VA A D++ E + AA DV DS+D
Sbjct: 24 FAEAYVREGATVAIA----DIDIERARQAAAEIGPAAYAVQMDVTRQDSID 70
>3gvc_A Oxidoreductase, probable short-chain type
dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG,
SBRI, structural genomics; 2.45A {Mycobacterium
tuberculosis}
Length = 277
Score = 41.4 bits (98), Expect = 3e-06
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 4/50 (8%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A A +GC V CA D++ + A DV + +
Sbjct: 46 ARRLADEGCHVLCA----DIDGDAADAAATKIGCGAAACRVDVSDEQQII 91
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 41.3 bits (98), Expect = 3e-06
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
AL FAR+G KV D+NE +Q + + DV +D
Sbjct: 22 AALAFAREGAKVIAT----DINESKLQEL--EKYPGIQTRVLDVTKKKQID 66
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 41.0 bits (97), Expect = 4e-06
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+A A QG + A + E+ + V A D+ + V
Sbjct: 27 LARRCAEQGADLVLAARTVERLEDVAKQVTD-TGRRALSVGTDITDDAQVA 76
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium
loti} PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 40.9 bits (97), Expect = 4e-06
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 4/50 (8%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A A G V + D+N E + A+ D+ + SV
Sbjct: 23 AARLAADGATVIVS----DINAEGAKAAAASIGKKARAIAADISDPGSVK 68
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 41.0 bits (97), Expect = 4e-06
Identities = 6/51 (11%), Positives = 16/51 (31%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+A FA G ++ + + + + + D+ D+
Sbjct: 36 IARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPA 86
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 41.1 bits (97), Expect = 4e-06
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+ F +G +VA D + E ++ + G A G DV ++
Sbjct: 21 LVDRFVAEGARVAVL----DKSAERLRELEVAHGGNAVGVVGDVRSLQDQK 67
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 41.0 bits (97), Expect = 4e-06
Identities = 11/53 (20%), Positives = 16/53 (30%), Gaps = 2/53 (3%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAP--GAAKGYYCDVGNVDSVD 51
+A G V D VQ + + GA + D+ N D
Sbjct: 27 VAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETA 79
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 41.0 bits (97), Expect = 4e-06
Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+ AR G +V A DL E + A + D+ N SV
Sbjct: 28 SRVLARAGARVVLA----DLPETDLAGAAASVGRGAVHHVVDLTNEVSVR 73
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 41.0 bits (97), Expect = 4e-06
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQ--VAPGAAKGYYCDVGNVDSVD 51
A+ FA++G V + EET Q++ + V+ DV D D
Sbjct: 23 AILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQD 74
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 41.0 bits (97), Expect = 4e-06
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+AL +A G +VA A D + + G A CDV D V
Sbjct: 48 VALAYAEAGAQVAVAARHSDALQVVADEIAG-VGGKALPIRCDVTQPDQVR 97
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 41.0 bits (97), Expect = 5e-06
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
MA FA+ G KV D ++ + V AA D+ VD
Sbjct: 25 MAKRFAKGGAKVVIV----DRDKAGAERVAGEIGDAALAVAADISKEADVD 71
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium
meliloti}
Length = 280
Score = 41.0 bits (97), Expect = 5e-06
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
AL FAR+G KV + E + G A DVG+ +
Sbjct: 25 ALLFAREGAKVVVTARNGNALAELTDEIAG-GGGEAAALAGDVGDEALHE 73
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 40.7 bits (96), Expect = 5e-06
Identities = 10/51 (19%), Positives = 13/51 (25%), Gaps = 1/51 (1%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+AL+ + G V D Q G CD V
Sbjct: 21 IALQLCKAGATVYITGRHLDTLRVVAQEAQS-LGGQCVPVVCDSSQESEVR 70
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 41.0 bits (97), Expect = 5e-06
Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 4/51 (7%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
FAR+G + D E + A DV + +V+
Sbjct: 22 ALDLFAREGASLVAV----DREERLLAEAVAALEAEAIAVVADVSDPKAVE 68
>3ak4_A NADH-dependent quinuclidinone reductase; SDR,
(R)-3-quinuclidinol, chiral alcohol, oxidoreductase;
HET: NAD; 2.00A {Agrobacterium tumefaciens}
Length = 263
Score = 40.6 bits (96), Expect = 5e-06
Identities = 14/51 (27%), Positives = 17/51 (33%), Gaps = 4/51 (7%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+A + G VA A DL+ Q V DV SVD
Sbjct: 28 IARALDKAGATVAIA----DLDVMAAQAVVAGLENGGFAVEVDVTKRASVD 74
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 40.6 bits (96), Expect = 6e-06
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+A +A+ G VA +E+ + +K Y C++ + SV+
Sbjct: 50 VAEAYAQAGADVAIWYNSHPADEKAEHLQKT-YGVHSKAYKCNISDPKSVE 99
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 40.2 bits (95), Expect = 8e-06
Identities = 11/52 (21%), Positives = 14/52 (26%), Gaps = 1/52 (1%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGA-AKGYYCDVGNVDSVD 51
G VA + + Q PGA CDV + V
Sbjct: 24 TVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVR 75
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 40.2 bits (95), Expect = 8e-06
Identities = 14/51 (27%), Positives = 16/51 (31%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A G VA E + V + K Y CDV N D V
Sbjct: 30 FTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVT 80
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 39.8 bits (94), Expect = 1e-05
Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+ E A G +V + +E +++ + +G CD+ + D
Sbjct: 37 IVEELAGLGARVYTCSRNEKELDECLEIWRE-KGLNVEGSVCDLLSRTERD 86
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet
of seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 39.5 bits (93), Expect = 1e-05
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQ--VAPGAAKGYYCDVGNVDSVD 51
A+ FAR+G KV + EET Q + V+ DV D
Sbjct: 23 AVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQD 74
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus
SP} SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 39.4 bits (93), Expect = 1e-05
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+A FA +G +A A++ E + CDV V+
Sbjct: 23 IAERFAVEGADIAIADLVPA--PEAEAAIRN-LGRRVLTVKCDVSQPGDVE 70
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 39.4 bits (93), Expect = 1e-05
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 1 MALEFARQGCKVACAEI-QKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A A G VA + EE V+ + + AK Y C V + +S +
Sbjct: 38 AARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCE 89
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 39.4 bits (93), Expect = 2e-05
Identities = 13/51 (25%), Positives = 19/51 (37%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+A A GC V A + E Q + + + CDV N + V
Sbjct: 37 IAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVK 87
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 39.0 bits (92), Expect = 2e-05
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 6/51 (11%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
FA++G ++ D+ E ++ A DV + SV+
Sbjct: 21 TLELFAKEGARLVAC----DIEEGPLREA--AEAVGAHPVVMDVADPASVE 65
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 39.0 bits (92), Expect = 2e-05
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A A G +V +I+ L E+V + + A G DV + +++
Sbjct: 25 YAEGLAAAGARVILNDIRATLLAESVDTLTR-KGYDAHGVAFDVTDELAIE 74
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 39.1 bits (92), Expect = 2e-05
Identities = 7/51 (13%), Positives = 16/51 (31%), Gaps = 2/51 (3%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+A G +V + +T ++ A G + D+ +
Sbjct: 45 IAQGLLEAGARVFICARDAEACADTATRLS--AYGDCQAIPADLSSEAGAR 93
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus
suis} PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 39.1 bits (92), Expect = 2e-05
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+A +A+ G + +I ++L + + A A GY CDV + D +
Sbjct: 50 IASAYAKAGATIVFNDINQELVDRGMAAYKA-AGINAHGYVCDVTDEDGIQ 99
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 39.0 bits (92), Expect = 2e-05
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+A +F +G KV D+ E+ + V P + + D + D
Sbjct: 22 IATKFVEEGAKVMITGRHSDVGEKAAKSVG--TPDQIQFFQHDSSDEDGWT 70
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET:
NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 39.0 bits (92), Expect = 2e-05
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 7/50 (14%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A FAR+G VA DL E ++ + D+ +
Sbjct: 23 AQAFAREGALVALC----DLRPEGKEV---AEAIGGAFFQVDLEDERERV 65
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane
alkaloid biosynthesis, reduction of tropinone to
pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium}
SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 38.6 bits (91), Expect = 3e-05
Identities = 6/51 (11%), Positives = 13/51 (25%), Gaps = 1/51 (1%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+ E A G V + + + + CD+ +
Sbjct: 25 IVEELASLGASVYTCSRNQKELNDCLTQWRS-KGFKVEASVCDLSSRSERQ 74
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 38.3 bits (90), Expect = 3e-05
Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 6/56 (10%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVN------QVAPGAAKGYYCDVGNVDSVD 51
++ A +G VA ++ + +ETV+++ G + DV +
Sbjct: 24 SVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAAR 79
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent
reductase, short chain dehydrogenase/reductase,
oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter
frateurii} PDB: 3ai2_A* 3ai1_A*
Length = 263
Score = 38.3 bits (90), Expect = 3e-05
Identities = 11/51 (21%), Positives = 19/51 (37%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+A FA++G + Q D E + + + DV + VD
Sbjct: 23 IAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVD 73
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 38.3 bits (90), Expect = 4e-05
Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A + G +V + + + A G A+ + CD+ + D++
Sbjct: 46 ARKLGSLGARVVLTARDVEKLRAVEREIVA-AGGEAESHACDLSHSDAIA 94
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 38.3 bits (90), Expect = 4e-05
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 5/51 (9%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+ F G +V D +E + + Q A CDV D V
Sbjct: 25 IVRAFVNSGARVVIC----DKDESGGRALEQ-ELPGAVFILCDVTQEDDVK 70
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 38.3 bits (90), Expect = 4e-05
Identities = 8/51 (15%), Positives = 14/51 (27%), Gaps = 7/51 (13%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
AL + G VAC D + + ++ A +
Sbjct: 17 SALRLSEAGHTVACH----DESFKQKD---ELEAFAETYPQLKPMSEQEPA 60
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 37.9 bits (89), Expect = 5e-05
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 2 ALEFARQGCKVACAEIQKDLN--EETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+ + A G +A A++ + ET++++ A A DV + + D
Sbjct: 19 SEKLAADGFDIAVADLPQQEEQAAETIKLIEA-ADQKAVFVGLDVTDKANFD 69
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 37.9 bits (89), Expect = 5e-05
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A A+ V C + + V + + GY DV + +
Sbjct: 61 AKMLAKSVSHVICISRTQKSCDSVVDEIKS-FGYESSGYAGDVSKKEEIS 109
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 38.0 bits (89), Expect = 5e-05
Identities = 7/52 (13%), Positives = 15/52 (28%), Gaps = 1/52 (1%)
Query: 1 MALEFARQGCKVACAEI-QKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+A A+ G + D V ++ G + D+ +
Sbjct: 41 IARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIA 92
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase;
HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2
PDB: 2hsd_A*
Length = 254
Score = 37.9 bits (89), Expect = 6e-05
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A + G +V A D+ +E + AA+ + DV +
Sbjct: 21 AARQAVAAGARVVLA----DVLDEEGAATARELGDAARYQHLDVTIEEDWQ 67
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 37.5 bits (88), Expect = 6e-05
Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 4/51 (7%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+G KV D+ +E + + AA+ + DV
Sbjct: 23 HVRAMVAEGAKVVFG----DILDEEGKAMAAELADAARYVHLDVTQPAQWK 69
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 37.5 bits (88), Expect = 7e-05
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 2 ALEFARQGCKVACAEI-QKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A FAR G KV +ET+ + G A + D+ ++
Sbjct: 24 ARLFARAGAKVGLHGRKAPANIDETIASMRA-DGGDAAFFAADLATSEACQ 73
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative;
1.87A {Rhodopseudomonas palustris}
Length = 252
Score = 37.6 bits (88), Expect = 7e-05
Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A +FA +G V + V + A G D N D V
Sbjct: 24 AKKFAAEGFTVFAGRRNGEKLAPLVAEIEA-AGGRIVARSLDARNEDEVT 72
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 37.2 bits (87), Expect = 8e-05
Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A ++G +V ++ T++ + + A A G CDV +V ++
Sbjct: 39 ARRLGKEGLRVFVCARGEEGLRTTLKELRE-AGVEADGRTCDVRSVPEIE 87
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 37.5 bits (88), Expect = 8e-05
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
L+F G KV D++E+ + ++ DV + ++
Sbjct: 19 CLDFLEAGDKVCFI----DIDEKRSADFAK-ERPNLFYFHGDVADPLTLK 63
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A
{Burkholderia pseudomallei}
Length = 270
Score = 37.1 bits (87), Expect = 9e-05
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
ALE AR+G V + E Q A +G +V + +VD
Sbjct: 45 ALELARRGAMVIGTATTEAGAEGIGAAFKQ-AGLEGRGAVLNVNDATAVD 93
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 37.2 bits (87), Expect = 9e-05
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAK--GYYCDVGNVDSVD 51
A+ FA++G +V +D EET Q + + A K DV D
Sbjct: 43 AVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQD 94
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 37.1 bits (87), Expect = 1e-04
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 1 MALEFARQGCKVACAEI-QKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
MA+ FA + KV ++D ++ + + G A DV V
Sbjct: 23 MAIRFATEKAKVVVNYRSKEDEANSVLEEIKK-VGGEAIAVKGDVTVESDVI 73
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2
PDB: 2q45_A
Length = 266
Score = 37.1 bits (87), Expect = 1e-04
Identities = 8/51 (15%), Positives = 14/51 (27%), Gaps = 1/51 (1%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+ EFA G + + E + + G CD +
Sbjct: 30 IVEEFAGFGAVIHTCARNEYELNECLSKWQK-KGFQVTGSVCDASLRPERE 79
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 36.8 bits (86), Expect = 1e-04
Identities = 9/51 (17%), Positives = 14/51 (27%), Gaps = 4/51 (7%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+ A++G V DL + A + DV N
Sbjct: 23 VTRMLAQEGATVLGL----DLKPPAGEEPAAELGAAVRFRNADVTNEADAT 69
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 36.8 bits (86), Expect = 1e-04
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 4/50 (8%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A F +G +V ++ + G A G D N+ +D
Sbjct: 46 AKRFVAEGARVFIT----GRRKDVLDAAIAEIGGGAVGIQADSANLAELD 91
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 36.7 bits (86), Expect = 1e-04
Identities = 7/50 (14%), Positives = 18/50 (36%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A + A G V + + + + A G ++ + +S++
Sbjct: 24 AEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESIN 73
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 36.9 bits (86), Expect = 1e-04
Identities = 8/51 (15%), Positives = 19/51 (37%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
MA A+ G V K+ ++ V ++ +A + ++ +
Sbjct: 44 MAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAE 94
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 36.9 bits (86), Expect = 1e-04
Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 4/51 (7%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
G V A DL E + + A+ +V + DSV
Sbjct: 46 TVRRLHADGLGVVIA----DLAAEKGKALADELGNRAEFVSTNVTSEDSVL 92
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 36.5 bits (85), Expect = 1e-04
Identities = 8/51 (15%), Positives = 11/51 (21%), Gaps = 4/51 (7%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A QG DL + + DV + V
Sbjct: 28 TAERLVGQGASAVLL----DLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQ 74
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 36.7 bits (86), Expect = 1e-04
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 4/51 (7%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+ +G KVA + D+NE Q + + DV +
Sbjct: 22 VVKLLLGEGAKVAFS----DINEAAGQQLAAELGERSMFVRHDVSSEADWT 68
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides}
PDB: 2wdz_A* 3lqf_A*
Length = 254
Score = 36.3 bits (85), Expect = 2e-04
Identities = 7/51 (13%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+ FA G ++ + + + Q ++ A DV + +++
Sbjct: 27 ICRAFAASGARLILIDREAAALDRAAQ---ELGAAVAARIVADVTDAEAMT 74
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 36.3 bits (85), Expect = 2e-04
Identities = 5/51 (9%), Positives = 15/51 (29%), Gaps = 5/51 (9%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
G +V + + V+ + D+G+ ++ +
Sbjct: 23 TVQALHATGARVVAVSRTQADLDSLVREC-----PGIEPVCVDLGDWEATE 68
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 36.3 bits (85), Expect = 2e-04
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A A +G KV +E Q ++ KG +V N +S++
Sbjct: 26 AELLAERGAKVIGT----ATSESGAQAISDYLGDNGKGMALNVTNPESIE 71
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 36.1 bits (84), Expect = 2e-04
Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A+ A G VA A + D +ET A DV + DSV
Sbjct: 45 AVALAGAGYGVALAGRRLDALQETAAE----IGDDALCVPTDVTDPDSVR 90
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 3e-04
Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 17/68 (25%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVN------QVAPGAAKGYYCDVGNVDSVDLRI 54
+A F+++ + + K V++VN Q AA G++ ++D
Sbjct: 1817 VAASFSQEALQYVVERVGKR-TGWLVEIVNYNVENQQYV--AA-------GDLRALDTVT 1866
Query: 55 G-LDFRKI 61
L+F K+
Sbjct: 1867 NVLNFIKL 1874
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 35.6 bits (83), Expect = 3e-04
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 11/51 (21%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+ R G KV L+E++ + + DV N + V
Sbjct: 30 VVDALVRYGAKVVSV----SLDEKSDV-------NVSDHFKIDVTNEEEVK 69
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 35.6 bits (83), Expect = 3e-04
Identities = 6/51 (11%), Positives = 14/51 (27%), Gaps = 2/51 (3%)
Query: 2 ALEFARQGCKVA-CAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A A G +A + + ++ D+ ++ S
Sbjct: 46 ARALAASGFDIAITGIGDAEGVAPVIAELSG-LGARVIFLRADLADLSSHQ 95
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 35.6 bits (83), Expect = 3e-04
Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 12/51 (23%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+A F +G KV +++ CDV N D V
Sbjct: 24 IAERFVDEGSKVIDL----SIHDP--------GEAKYDHIECDVTNPDQVK 62
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 35.6 bits (83), Expect = 3e-04
Identities = 5/51 (9%), Positives = 11/51 (21%), Gaps = 2/51 (3%)
Query: 2 ALEFARQGCKVA-CAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+ +G V E + + DV + +
Sbjct: 24 TEKLLAKGYSVTVTYHSDTTAMETMKETYKD-VEERLQFVQADVTKKEDLH 73
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 35.3 bits (82), Expect = 4e-04
Identities = 12/50 (24%), Positives = 15/50 (30%), Gaps = 1/50 (2%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A A +G V V + A G CDV + D V
Sbjct: 41 ARTLAARGIAVYGCARDAKNVSAAVDGLRA-AGHDVDGSSCDVTSTDEVH 89
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 35.6 bits (83), Expect = 4e-04
Identities = 8/51 (15%), Positives = 11/51 (21%), Gaps = 12/51 (23%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+ G +VA A D A D+ D
Sbjct: 44 VVTALRAAGARVAVA----DRAVA--------GIAADLHLPGDLREAAYAD 82
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 35.3 bits (82), Expect = 4e-04
Identities = 7/52 (13%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 1 MALEFARQGCKVA--CAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSV 50
+A++ + G +V + +N+ A D+ N + +
Sbjct: 39 IAVKLHQTGYRVVIHYHNSAEAA-VSLADELNKERSNTAVVCQADLTNSNVL 89
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative,
EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia
cavernae}
Length = 273
Score = 34.8 bits (81), Expect = 5e-04
Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+A +AR G V + +E + G+A+ D+ +++
Sbjct: 47 IAHGYARAGAHVLAWGRTDGV-KEVADEIAD-GGGSAEAVVADLADLEGAA 95
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase;
HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 34.8 bits (81), Expect = 6e-04
Identities = 6/51 (11%), Positives = 13/51 (25%), Gaps = 5/51 (9%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
G KV + + + D+G+ D+ +
Sbjct: 23 TVKALHASGAKVVAV----TRTNSDLVSL-AKECPGIEPVCVDLGDWDATE 68
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta
protein, NAD(P)-binding rossmann fold, csgid,
oxidoreductase; 1.95A {Francisella tularensis subsp}
Length = 247
Score = 34.8 bits (81), Expect = 7e-04
Identities = 8/50 (16%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A A +G V + E+ + + A+G ++ +++S+
Sbjct: 22 AHALASKGATVVGTATSQASAEKFENSMKE-KGFKARGLVLNISDIESIQ 70
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 34.5 bits (80), Expect = 7e-04
Identities = 7/52 (13%), Positives = 14/52 (26%), Gaps = 1/52 (1%)
Query: 1 MALEFARQGCKVACAEI-QKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+A A QG + E+ + D+ ++V
Sbjct: 20 IATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVR 71
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 34.5 bits (80), Expect = 7e-04
Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 2 ALEFARQGCKVA-CAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
ALE A G KVA +E V + A G A DV V+
Sbjct: 45 ALELAAAGAKVAVNYASSAGAADEVVAAIAA-AGGEAFAVKADVSQESEVE 94
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 34.4 bits (80), Expect = 8e-04
Identities = 8/52 (15%), Positives = 15/52 (28%), Gaps = 2/52 (3%)
Query: 1 MALEFARQGCKVAC-AEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+A + G + + T + A DV N + V+
Sbjct: 21 IAWKLGNMGANIVLNGSPASTSLDATAEEFKA-AGINVVVAKGDVKNPEDVE 71
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A
{Burkholderia pseudomallei 1710B}
Length = 269
Score = 34.5 bits (80), Expect = 8e-04
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+ G VA + +++ + T M + A K Y DV + +S +
Sbjct: 42 SRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCE 91
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 34.4 bits (80), Expect = 9e-04
Identities = 7/50 (14%), Positives = 16/50 (32%), Gaps = 4/50 (8%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A F QG V E+ ++ + + ++ + S+
Sbjct: 44 ARCFHAQGAIVGLH----GTREDKLKEIAADLGKDVFVFSANLSDRKSIK 89
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB:
3vc7_A
Length = 255
Score = 34.4 bits (80), Expect = 0.001
Identities = 5/50 (10%), Positives = 14/50 (28%), Gaps = 4/50 (8%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
G +V NE + + + D+ +++ +
Sbjct: 25 VRRLVEGGAEVLLT----GRNESNIARIREEFGPRVHALRSDIADLNEIA 70
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 34.4 bits (80), Expect = 0.001
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 4/50 (8%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A + G KV + NEE ++ + C++ N +
Sbjct: 31 ARLLHKLGSKVIIS----GSNEEKLKSLGNALKDNYTIEVCNLANKEECS 76
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 34.1 bits (79), Expect = 0.001
Identities = 9/51 (17%), Positives = 14/51 (27%), Gaps = 7/51 (13%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
G +V D+ E V A+ DV + +V
Sbjct: 25 TTKRLLDAGAQVVVL----DIRGEDVV---ADLGDRARFAAADVTDEAAVA 68
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 34.0 bits (79), Expect = 0.001
Identities = 8/52 (15%), Positives = 16/52 (30%), Gaps = 2/52 (3%)
Query: 1 MALEFARQGCKVACAEIQ-KDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A+ A G + + K ET + + + +VG +
Sbjct: 20 AAIRLAENGYNIVINYARSKKAALETAEEIEK-LGVKVLVVKANVGQPAKIK 70
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 33.7 bits (78), Expect = 0.001
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGA-AKGYYCDVGNVDSVD 51
ALE AR G ++ ++ E + + GA D+ +D
Sbjct: 24 ALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDID 74
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 33.8 bits (78), Expect = 0.001
Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 4/50 (8%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A FAR G V D++ + DV D+VD
Sbjct: 230 AEVFARDGATVVAI----DVDGAAEDLKRVADKVGGTALTLDVTADDAVD 275
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 33.3 bits (77), Expect = 0.002
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 13/62 (20%)
Query: 2 ALEFARQGCKVACAEIQKDLN------------EETVQMVNQVAPGAAKGYYCDVGNVDS 49
A+ AR+G + ++ K L+ ETV+ V DV + D+
Sbjct: 45 AITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEA-LGRRIIASQVDVRDFDA 103
Query: 50 VD 51
+
Sbjct: 104 MQ 105
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc;
2.45A {Sinorhizobium meliloti}
Length = 260
Score = 32.9 bits (76), Expect = 0.003
Identities = 4/51 (7%), Positives = 13/51 (25%), Gaps = 10/51 (19%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+ + + +V + + A D+ ++ D
Sbjct: 44 LVRAYRDRNYRVVAT----SRSIK------PSADPDIHTVAGDISKPETAD 84
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural
genomics, secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 32.8 bits (76), Expect = 0.003
Identities = 7/51 (13%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 2 ALEFARQGCKVA-CAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
AL A G +A ++ EE + + ++ ++
Sbjct: 18 ALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAAT 68
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 33.0 bits (76), Expect = 0.003
Identities = 5/51 (9%), Positives = 10/51 (19%), Gaps = 13/51 (25%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+ F + D E P A + + +
Sbjct: 38 VVKFFKSKSWNTISI----DFREN---------PNADHSFTIKDSGEEEIK 75
>4e4y_A Short chain dehydrogenase family protein; structural genomics,
the center for structural genomics of I diseases,
csgid, niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 32.9 bits (76), Expect = 0.003
Identities = 3/51 (5%), Positives = 10/51 (19%), Gaps = 10/51 (19%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+ + D+ + + K D+ +
Sbjct: 20 VVELLLQNKNHTVINI---DIQQSF-------SAENLKFIKADLTKQQDIT 60
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 33.0 bits (76), Expect = 0.003
Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 13/63 (20%)
Query: 1 MALEFARQGCKVACAEIQKDLN------------EETVQMVNQVAPGAAKGYYCDVGNVD 48
A+ A+ G + ++ + +ETV++V + DV ++
Sbjct: 62 HAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEE-QGRRIIARQADVRDLA 120
Query: 49 SVD 51
S+
Sbjct: 121 SLQ 123
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus
anthracis}
Length = 246
Score = 32.8 bits (76), Expect = 0.003
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 2 ALEFARQGCKVACAEI-QKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A++ A+QG V + E V + + A DV N + V
Sbjct: 21 AIDLAKQGANVVVNYAGNEQKANEVVDEIKK-LGSDAIAVRADVANAEDVT 70
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 32.8 bits (75), Expect = 0.003
Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 3/53 (5%)
Query: 1 MALEFARQGCKVA--CAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+A +G V + +N P +A D+ NV +
Sbjct: 62 IAEGLHAEGYAVCLHYHRSAAEA-NALSATLNARRPNSAITVQADLSNVATAP 113
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold,
rossmann fold, oxidoreductase; HET: NAP; 2.30A
{Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 32.8 bits (76), Expect = 0.004
Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 2 ALEFARQGCKVA-CAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
AL + GCKV EE + + G A + DV V+
Sbjct: 18 ALSLGKAGCKVLVNYARSAKAAEEVSKQIEA-YGGQAITFGGDVSKEADVE 67
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 32.5 bits (75), Expect = 0.004
Identities = 8/51 (15%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+ + +G +V+ + +Q + A G D+ + + VD
Sbjct: 19 LTIGLVERGHQVSMM----GRRYQRLQQQELLLGNAVIGIVADLAHHEDVD 65
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 32.2 bits (74), Expect = 0.005
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 15/57 (26%)
Query: 2 ALEFARQGCKVACAEIQKDLN--------EETVQMVNQVAPGAAKGYYCDVGNVDSV 50
A+ +QG +V ++ + V +N G+A D+ S+
Sbjct: 28 AVRLHQQGFRVV-------VHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSL 77
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 32.5 bits (74), Expect = 0.005
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 6/57 (10%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAP------GAAKGYYCDVGNVDSVD 51
+AL+ A+ G + A + + + + A G A DV + +
Sbjct: 61 IALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQIS 117
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 32.5 bits (75), Expect = 0.005
Identities = 15/50 (30%), Positives = 17/50 (34%), Gaps = 12/50 (24%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A A G KVA V AP G DV + D+VD
Sbjct: 32 AQRLAADGHKVA------------VTHRGSGAPKGLFGVEVDVTDSDAVD 69
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 242
Score = 32.2 bits (74), Expect = 0.005
Identities = 10/51 (19%), Positives = 13/51 (25%), Gaps = 13/51 (25%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
AL +G +V DL E DV + V
Sbjct: 18 AALALKARGYRVVVL----DLRRE---------GEDLIYVEGDVTREEDVR 55
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 32.1 bits (74), Expect = 0.006
Identities = 6/50 (12%), Positives = 11/50 (22%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+ G +V + +VG+ DS
Sbjct: 30 CQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTK 79
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 31.9 bits (73), Expect = 0.006
Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 3/53 (5%)
Query: 1 MALEFARQGCKVA--CAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+A +G V + +N P +A D+ NV +
Sbjct: 25 IAEGLHAEGYAVCLHYHRSAAEA-NALSATLNARRPNSAITVQADLSNVATAP 76
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 32.1 bits (74), Expect = 0.006
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 2 ALEFARQGCKVA-CAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
AL+ A +G VA K+ E V+ + + +V + D V
Sbjct: 21 ALQLAEEGYNVAVNYAGSKEKAEAVVEEIKA-KGVDSFAIQANVADADEVK 70
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 31.8 bits (73), Expect = 0.007
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 14/63 (22%)
Query: 2 ALEFARQGCKVACAEIQKDLN-------------EETVQMVNQVAPGAAKGYYCDVGNVD 48
A+ A +G + +I ++ +ET ++V A DV +
Sbjct: 32 AVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVED-QGRKALTRVLDVRDDA 90
Query: 49 SVD 51
++
Sbjct: 91 ALR 93
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas;
oxidoreductase; 1.99A {Streptomyces coelicolor}
Length = 253
Score = 31.7 bits (73), Expect = 0.008
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 12/50 (24%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A FA G KVA + + P CD+ + + V+
Sbjct: 38 ARAFADAGDKVA------------ITYRSGEPPEGFLAVKCDITDTEQVE 75
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 31.7 bits (73), Expect = 0.008
Identities = 8/53 (15%), Positives = 14/53 (26%), Gaps = 4/53 (7%)
Query: 2 ALEFARQGCKVA---CAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A FA + + D + + Y D+ N + V
Sbjct: 28 AKTFALESVNLVLHYHQAKDSDTANKLKDELED-QGAKVALYQSDLSNEEEVA 79
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A*
1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 31.9 bits (73), Expect = 0.008
Identities = 4/44 (9%), Positives = 12/44 (27%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDV 44
+ E ++ K + + ++ + DV
Sbjct: 21 TSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDV 64
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 31.8 bits (73), Expect = 0.008
Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGA-AKGYYCDVGNVDSVD 51
A +G V +++ ET++ + P A + D+G
Sbjct: 27 ATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQ 77
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 31.4 bits (72), Expect = 0.010
Identities = 10/51 (19%), Positives = 11/51 (21%), Gaps = 11/51 (21%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
AL F G KV D DV + V
Sbjct: 23 TALAFVEAGAKVTGF----DQAFTQ-------EQYPFATEVMDVADAAQVA 62
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 31.3 bits (72), Expect = 0.010
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 2 ALEFARQGCKVACA-EIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A+ FA++G V + V + + +A D+ N V+
Sbjct: 25 AIRFAQEGANVVLTYNGAAEGAATAVAEIEK-LGRSALAIKADLTNAAEVE 74
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 31.0 bits (71), Expect = 0.014
Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 6/57 (10%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAP------GAAKGYYCDVGNVDSVD 51
+AL AR G VA A N + ++ A G CD+ D V
Sbjct: 22 IALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVR 78
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 31.0 bits (71), Expect = 0.016
Identities = 7/51 (13%), Positives = 17/51 (33%), Gaps = 3/51 (5%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+A AR G + + + + A + D+ +V ++
Sbjct: 20 IAQVLARAGANIVLNGFGDP--APALAEIAR-HGVKAVHHPADLSDVAQIE 67
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics;
2.50A {Mycobacterium thermoresistibile}
Length = 285
Score = 30.7 bits (70), Expect = 0.019
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 6/57 (10%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAP------GAAKGYYCDVGNVDSVD 51
+A A G VA + + + + A G A D+ + D+V
Sbjct: 25 IAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVA 81
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 30.6 bits (70), Expect = 0.019
Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 17/66 (25%)
Query: 2 ALEFARQGCKVACAEIQKDLN----------------EETVQMVNQVAPGAAKGYYCDVG 45
A+ A++G + +I K + ET +V DV
Sbjct: 28 AVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKG-HNRRIVTAEVDVR 86
Query: 46 NVDSVD 51
+ D++
Sbjct: 87 DYDALK 92
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 30.6 bits (70), Expect = 0.019
Identities = 9/62 (14%), Positives = 19/62 (30%), Gaps = 13/62 (20%)
Query: 2 ALEFARQGCKVACAEIQKDLN------------EETVQMVNQVAPGAAKGYYCDVGNVDS 49
A+ A G + ++ + TV++V DV + +S
Sbjct: 30 AVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVED-IGSRIVARQADVRDRES 88
Query: 50 VD 51
+
Sbjct: 89 LS 90
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 30.7 bits (70), Expect = 0.022
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 13/62 (20%)
Query: 2 ALEFARQGCKVACAEIQKDLN------------EETVQMVNQVAPGAAKGYYCDVGNVDS 49
A++ A +G + +I D+ EE V + A DV + +
Sbjct: 27 AVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEK-TGRKAYTAEVDVRDRAA 85
Query: 50 VD 51
V
Sbjct: 86 VS 87
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 30.6 bits (70), Expect = 0.022
Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 14/63 (22%)
Query: 2 ALEFARQGCKVACAEIQKDLN-------------EETVQMVNQVAPGAAKGYYCDVGNVD 48
A+ A +G + +I L ETV++V A D + D
Sbjct: 28 AVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEA-ANRRIVAAVVDTRDFD 86
Query: 49 SVD 51
+
Sbjct: 87 RLR 89
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 30.6 bits (70), Expect = 0.022
Identities = 8/50 (16%), Positives = 19/50 (38%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A+ +AR G V ++ + +N+ + + D+ S +
Sbjct: 29 AMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSEN 78
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 30.2 bits (69), Expect = 0.023
Identities = 8/52 (15%), Positives = 15/52 (28%), Gaps = 2/52 (3%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYY--CDVGNVDSVD 51
A A G +V K E+ + + + D+ + D
Sbjct: 24 AAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKAD 75
>3s55_A Putative short-chain dehydrogenase/reductase; structural
genomics, seattle structural genomics center for
infectious disease, ssgcid; HET: NAD; 2.10A
{Mycobacterium abscessus}
Length = 281
Score = 30.2 bits (69), Expect = 0.033
Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 13/62 (20%)
Query: 2 ALEFARQGCKVACAEIQKDLN------------EETVQMVNQVAPGAAKGYYCDVGNVDS 49
A+ A G +A + ++ + ETV +V + DV + +
Sbjct: 27 AVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEK-TGRRCISAKVDVKDRAA 85
Query: 50 VD 51
++
Sbjct: 86 LE 87
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 29.8 bits (68), Expect = 0.040
Identities = 12/50 (24%), Positives = 19/50 (38%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A AR G +A D E+ + Q ++ DV +SV+
Sbjct: 19 ARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVE 68
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 29.8 bits (68), Expect = 0.041
Identities = 9/51 (17%), Positives = 14/51 (27%), Gaps = 6/51 (11%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
AL G +V + E V ++ A Y D +
Sbjct: 43 CALRLLEHGHRVIIS----YRTEHAS--VTELRQAGAVALYGDFSCETGIM 87
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 28.8 bits (65), Expect = 0.088
Identities = 2/50 (4%), Positives = 11/50 (22%), Gaps = 2/50 (4%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+ + +E ++ + + D+ +
Sbjct: 19 VDVLFSLDKDTVVYGVAR--SEAPLKKLKEKYGDRFFYVVGDITEDSVLK 66
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 28.6 bits (65), Expect = 0.11
Identities = 5/50 (10%), Positives = 8/50 (16%), Gaps = 7/50 (14%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+ G V C + E G +
Sbjct: 18 VEALTQDGYTVVCHDASFADAAERQ-----RFESENPG--TIALAEQKPE 60
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3,
oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A
{Staphylococcus aureus} PDB: 3ojl_A*
Length = 431
Score = 28.3 bits (64), Expect = 0.12
Identities = 7/30 (23%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQ 31
++ FA+ G V + D+N++T+ +
Sbjct: 27 SIMFAKHGVDV----LGVDINQQTIDKLQN 52
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 28.2 bits (64), Expect = 0.12
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 9/44 (20%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDV 44
+A +G +VA A + +++ A D+
Sbjct: 18 IAEALVARGYRVAIASRNPEEAAQSL---------GAVPLPTDL 52
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 28.3 bits (64), Expect = 0.12
Identities = 5/52 (9%), Positives = 9/52 (17%), Gaps = 2/52 (3%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQ--VAPGAAKGYYCDVGNVDSVD 51
A +A G V + E + +
Sbjct: 31 ARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYR 82
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 28.3 bits (64), Expect = 0.14
Identities = 9/57 (15%), Positives = 15/57 (26%), Gaps = 8/57 (14%)
Query: 2 ALEFARQGCK-------VACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
ALEFAR + + E+ D+ ++ V
Sbjct: 19 ALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRA-EGALTDTITADISDMADVR 74
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 28.0 bits (63), Expect = 0.15
Identities = 7/50 (14%), Positives = 11/50 (22%), Gaps = 4/50 (8%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
AR G V D + ++ G + V
Sbjct: 18 KELLARAGHTVIGI----DRGQADIEADLSTPGGRETAVAAVLDRCGGVL 63
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 27.6 bits (62), Expect = 0.20
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 15/58 (25%)
Query: 2 ALEFARQGCKV-ACA-------EIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A +QG KV CA E+ + PG Y CD+ N + +
Sbjct: 49 ARALVQQGLKVVGCARTVGNIEELAAECKSAG-------YPGTLIPYRCDLSNEEDIL 99
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 27.5 bits (62), Expect = 0.28
Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 2/51 (3%)
Query: 2 ALEFARQGCKVACA-EIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A A G V + EE + A G A DV + +V
Sbjct: 44 AARLASDGFTVVINYAGKAAAAEEVAGKIEA-AGGKALTAQADVSDPAAVR 93
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ;
1.50A {Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 27.2 bits (61), Expect = 0.29
Identities = 11/59 (18%), Positives = 18/59 (30%), Gaps = 16/59 (27%)
Query: 1 MALEFARQGCKVACAEIQKDLN--------EETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+A+E R+G V +N EE V + + D+ V
Sbjct: 37 IAIELGRRGASVV-------VNYGSSSKAAEEVVAELKK-LGAQGVAIQADISKPSEVV 87
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe
grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 26.8 bits (60), Expect = 0.50
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 16/59 (27%)
Query: 1 MALEFARQGCKVACAEIQKDLN--------EETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
MA+E R+GCKV +N EE V + + A +VG V+ +
Sbjct: 45 MAMELGRRGCKVI-------VNYANSTESAEEVVAAIKK-NGSDAACVKANVGVVEDIV 95
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural
genomics, protein structure initiati
nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Length = 272
Score = 26.4 bits (59), Expect = 0.64
Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 16/58 (27%)
Query: 2 ALEFARQGCKVACAEIQKDLN--------EETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
ARQG +V +N + V + + + G A DVGN +
Sbjct: 43 CRLAARQGWRVG-------VNYAANREAADAVVAAITE-SGGEAVAIPGDVGNAADIA 92
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 26.0 bits (58), Expect = 0.93
Identities = 11/58 (18%), Positives = 16/58 (27%), Gaps = 17/58 (29%)
Query: 2 ALEFARQGCKVACA--------EIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A E G K+ I ++ + G A DV + SV
Sbjct: 21 ARELGVAGAKILLGARRQARIEAIATEIRDAG---------GTALAQVLDVTDRHSVA 69
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 25.2 bits (56), Expect = 1.4
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 16/58 (27%)
Query: 2 ALEFARQGCKVACAEIQKDLN--------EETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A A +G VA L + V + Q A G A D + ++++
Sbjct: 48 AKRLALEGAAVA-------LTYVNAAERAQAVVSEIEQ-AGGRAVAIRADNRDAEAIE 97
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 25.0 bits (55), Expect = 2.2
Identities = 7/36 (19%), Positives = 10/36 (27%), Gaps = 4/36 (11%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAA 37
F + G V DL+ N + G
Sbjct: 20 LEFFKKNGYTVLNI----DLSANDQADSNILVDGNK 51
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 24.8 bits (55), Expect = 2.2
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 10/50 (20%)
Query: 2 ALEFARQGCKVACAEIQKDLNE-----ETVQMVNQVAPGAAKGYYCDVGN 46
++ FA++G +A A L+E ET Q V + D+ +
Sbjct: 64 SIAFAKEGANIAIA----YLDEEGDANETKQYVEK-EGVKCVLLPGDLSD 108
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A
{Bacillus anthracis str}
Length = 255
Score = 24.8 bits (55), Expect = 2.6
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
Query: 1 MALEFARQGCKVACAEI----QKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+A A G VA I +K+ EETV + G+A ++ ++ V+
Sbjct: 23 IAKRLANDGALVA---IHYGNRKEEAEETVYEIQS-NGGSAFSIGANLESLHGVE 73
>2jah_A Clavulanic acid dehydrogenase; short-chain
dehydrogenase/reductase, lactamase inhibitor, AN
biosynthesis, NADPH, oxidoreductase; HET: MSE NDP;
1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Length = 247
Score = 24.4 bits (54), Expect = 3.1
Identities = 12/58 (20%), Positives = 16/58 (27%), Gaps = 17/58 (29%)
Query: 2 ALEFARQGCKVACA--------EIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A A +G VA A + +L A DV + VD
Sbjct: 24 ARALAAEGAAVAIAARRVEKLRALGDELTA---------AGAKVHVLELDVADRQGVD 72
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane,
transmembra membrane protein, signaling protein; 1.99A
{Mus musculus} PDB: 3ryt_A*
Length = 627
Score = 24.7 bits (53), Expect = 3.1
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 7 RQGCKVACAEIQKDLNEETVQMVNQVAP 34
CK A AE+Q D+NE T M P
Sbjct: 24 ALECKEAFAELQTDINELTNHMDGVQIP 51
>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide
complex, nucleotide binding fold; HET: TYD; 1.70A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.68.1.6
Length = 295
Score = 24.3 bits (54), Expect = 3.6
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 7 RQGCKVACAE 16
RQG +AC E
Sbjct: 246 RQGFYIACLE 255
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short
chain dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 24.2 bits (53), Expect = 3.7
Identities = 3/26 (11%), Positives = 7/26 (26%), Gaps = 4/26 (15%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQ 27
G ++ D+ + V
Sbjct: 18 RKVLEAAGHQIVGI----DIRDAEVI 39
>3e9n_A Putative short-chain dehydrogenase/reductase; structural
genomics, unknown function, oxidoreductase, PSI- 2;
2.40A {Corynebacterium glutamicum}
Length = 245
Score = 24.1 bits (53), Expect = 3.7
Identities = 5/50 (10%), Positives = 12/50 (24%), Gaps = 7/50 (14%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+ +R A N E + + + D+ +
Sbjct: 22 VKDLSRDHIVYALGR-----NPEHLAAL--AEIEGVEPIESDIVKEVLEE 64
>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose,
nucleotidyltransferase, pyrophosphorylase, allostery;
HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6
PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A*
1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B*
1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A*
...
Length = 293
Score = 24.4 bits (54), Expect = 3.8
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 7 RQGCKVACAE 16
RQG KVAC E
Sbjct: 245 RQGLKVACPE 254
>2ehd_A Oxidoreductase, oxidoreductase, short-chain
dehydrogenase/reducta; rossman fold, structural
genomics, NPPSFA; 2.40A {Thermus thermophilus}
Length = 234
Score = 24.0 bits (53), Expect = 3.9
Identities = 6/51 (11%), Positives = 11/51 (21%), Gaps = 5/51 (9%)
Query: 1 MALEFARQGCKVACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A +G +V + + + A DV
Sbjct: 21 TARLLHAKGYRVGLMARDEKRLQALAAEL-----EGALPLPGDVREEGDWA 66
>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate
thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia
coli} SCOP: c.68.1.6
Length = 296
Score = 24.0 bits (53), Expect = 3.9
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 7 RQGCKVACAE 16
RQG K+AC E
Sbjct: 246 RQGFKIACLE 255
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain
dehydrogenase/REDU SDR, fungi, oxidoreductase; HET:
GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A*
3qwi_A* 3itd_A
Length = 270
Score = 24.1 bits (53), Expect = 4.0
Identities = 11/59 (18%), Positives = 18/59 (30%), Gaps = 16/59 (27%)
Query: 1 MALEFARQGCKVACAEIQKDLN--------EETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
+A+ R G KV +N E+ V + A D+ V +
Sbjct: 34 VAVHLGRLGAKVV-------VNYANSTKDAEKVVSEIKA-LGSDAIAIKADIRQVPEIV 84
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 24.3 bits (53), Expect = 4.0
Identities = 12/60 (20%), Positives = 18/60 (30%), Gaps = 11/60 (18%)
Query: 2 ALEFARQGCKV----------ACAEIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
AL FA +G +V + V + A G A +V + D
Sbjct: 44 ALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITA-AGGEAVADGSNVADWDQAA 102
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 24.4 bits (53), Expect = 4.1
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 2 ALEFARQGCKV 12
AL FA +G KV
Sbjct: 36 ALLFAERGAKV 46
>2nn6_F MTR3, exosome component 6; RNA, exosome, PM/SCL, phosphorolytic,
hydrolase/transferase complex; 3.35A {Homo sapiens}
SCOP: d.14.1.4 d.101.1.1
Length = 272
Score = 24.0 bits (52), Expect = 4.1
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 2 ALEFARQGCKVACAEIQKDLNEETVQMVNQVAP 34
A+ +GC+ +Q+ L + P
Sbjct: 240 AVRLGLEGCQRLYPVLQQSLVRAARRRGAAAQP 272
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 24.3 bits (53), Expect = 4.5
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 2 ALEFARQGCKV 12
+LEFA+ G KV
Sbjct: 25 SLEFAKLGAKV 35
Score = 23.9 bits (52), Expect = 4.7
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 2 ALEFARQGCKV 12
A FA+ G KV
Sbjct: 339 AKWFAKYGAKV 349
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 23.9 bits (52), Expect = 4.7
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 2 ALEFARQGCKV 12
AL FA +G V
Sbjct: 26 ALAFAERGALV 36
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 24.1 bits (53), Expect = 4.8
Identities = 7/31 (22%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 2 ALEFARQGCKVA---CAEIQKDLNEETVQMV 29
A+ +AR+G VA ++D ++ ++
Sbjct: 66 AIAYAREGADVAINYLPAEEEDA-QQVKALI 95
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 23.3 bits (51), Expect = 8.4
Identities = 7/58 (12%), Positives = 15/58 (25%), Gaps = 18/58 (31%)
Query: 2 ALEFARQGCKVACA--------EIQKDLNEETVQMVNQVAPGAAKGYYCDVGNVDSVD 51
A FA G + + +L+ + DV + ++
Sbjct: 38 ARRFAEAGWSLVLTGRREERLQALAGELSAK----------TRVLPLTLDVRDRAAMS 85
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.418
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,028,001
Number of extensions: 45353
Number of successful extensions: 387
Number of sequences better than 10.0: 1
Number of HSP's gapped: 315
Number of HSP's successfully gapped: 178
Length of query: 69
Length of database: 6,701,793
Length adjustment: 39
Effective length of query: 30
Effective length of database: 5,612,874
Effective search space: 168386220
Effective search space used: 168386220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.2 bits)