Query psy124
Match_columns 60
No_of_seqs 114 out of 1132
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 18:14:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy124.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/124hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 MTH00050 ATP6 ATP synthase F0 99.8 3.6E-19 7.7E-24 118.2 7.4 52 1-52 82-133 (170)
2 MTH00174 ATP6 ATP synthase F0 99.8 1.2E-18 2.7E-23 120.4 7.5 54 1-54 150-203 (252)
3 MTH00073 ATP6 ATP synthase F0 99.8 2.2E-18 4.8E-23 117.2 7.6 52 1-52 129-180 (227)
4 MTH00132 ATP6 ATP synthase F0 99.8 2.6E-18 5.6E-23 117.0 7.3 52 1-52 129-180 (227)
5 MTH00179 ATP6 ATP synthase F0 99.8 3.4E-18 7.3E-23 116.3 7.7 52 1-52 129-180 (227)
6 MTH00120 ATP6 ATP synthase F0 99.8 3.9E-18 8.5E-23 115.8 7.6 51 1-51 129-179 (227)
7 MTH00005 ATP6 ATP synthase F0 99.7 4.9E-18 1.1E-22 115.6 7.8 50 1-50 133-182 (231)
8 MTH00101 ATP6 ATP synthase F0 99.7 5.7E-18 1.2E-22 115.0 7.9 51 1-51 128-178 (226)
9 MTH00172 ATP6 ATP synthase F0 99.7 4.8E-18 1E-22 115.9 7.5 51 1-51 131-181 (232)
10 MTH00035 ATP6 ATP synthase F0 99.7 6.7E-18 1.5E-22 115.0 7.6 52 1-52 132-183 (229)
11 MTH00176 ATP6 ATP synthase F0 99.7 7.6E-18 1.7E-22 114.6 7.5 52 1-52 131-182 (229)
12 MTH00157 ATP6 ATP synthase F0 99.7 7.9E-18 1.7E-22 114.1 7.4 52 1-52 128-179 (223)
13 TIGR01131 ATP_synt_6_or_A ATP 99.7 1E-17 2.2E-22 113.7 7.6 52 1-52 130-181 (226)
14 MTH00175 ATP6 ATP synthase F0 99.7 1.6E-17 3.4E-22 114.1 7.9 52 1-52 142-193 (244)
15 MTH00173 ATP6 ATP synthase F0 99.7 1.5E-17 3.2E-22 113.2 7.7 51 1-51 131-181 (231)
16 PF00119 ATP-synt_A: ATP synth 99.7 5.1E-18 1.1E-22 113.0 3.4 53 1-53 123-175 (215)
17 MTH00087 ATP6 ATP synthase F0 99.7 4.3E-16 9.2E-21 104.8 7.5 49 1-49 109-158 (195)
18 PRK13417 F0F1 ATP synthase sub 99.6 4.9E-16 1.1E-20 112.0 6.5 52 1-52 252-304 (352)
19 PRK13419 F0F1 ATP synthase sub 99.6 6.9E-16 1.5E-20 110.9 6.9 48 2-49 231-278 (342)
20 KOG4665|consensus 99.6 1.7E-15 3.7E-20 105.4 6.0 57 1-57 150-206 (252)
21 PRK05815 F0F1 ATP synthase sub 99.5 3.5E-14 7.5E-19 96.5 6.7 39 12-50 140-178 (227)
22 TIGR03306 altF1_A alternate F1 99.5 8.1E-14 1.8E-18 94.6 5.9 40 11-50 141-180 (217)
23 COG0356 AtpB F0F1-type ATP syn 99.5 8.4E-14 1.8E-18 96.6 6.1 45 10-54 158-202 (246)
24 PRK13421 F0F1 ATP synthase sub 99.5 8.5E-14 1.8E-18 94.8 5.5 39 12-50 143-181 (223)
25 CHL00046 atpI ATP synthase CF0 99.4 1.8E-13 3.9E-18 93.6 6.1 40 11-50 155-194 (228)
26 PRK13420 F0F1 ATP synthase sub 99.3 2.1E-12 4.6E-17 88.2 5.6 38 12-49 140-177 (226)
27 KOG4664|consensus 76.6 6.7 0.00015 28.0 4.6 52 2-53 123-174 (261)
28 PF04825 Rad21_Rec8_N: N termi 38.5 34 0.00073 20.8 2.3 28 17-44 38-66 (111)
29 TIGR02862 spore_BofA pro-sigma 28.0 1.4E+02 0.003 17.7 6.2 39 12-50 9-47 (83)
30 PF08324 PUL: PUL domain; Int 27.0 35 0.00075 22.8 1.1 14 27-40 127-140 (268)
31 PF06947 DUF1290: Protein of u 25.0 58 0.0013 19.8 1.7 16 24-39 66-81 (88)
32 KOG1356|consensus 24.0 76 0.0016 26.4 2.6 35 1-35 810-846 (889)
No 1
>MTH00050 ATP6 ATP synthase F0 subunit 6; Validated
Probab=99.79 E-value=3.6e-19 Score=118.17 Aligned_cols=52 Identities=29% Similarity=0.356 Sum_probs=48.8
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHH
Q psy124 1 MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRLD 52 (60)
Q Consensus 1 ~~P~G~p~~l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~~~ 52 (60)
++|+|+|+++.|+++++|++|+++||+||++||+|||+|||.++.++++...
T Consensus 82 flP~G~P~~L~P~lv~IElIS~liRP~TL~iRLfaNm~AGHll~~ll~~~~~ 133 (170)
T MTH00050 82 FVPVGTPLYICPFVCIAETISYIIRPVVLILRPFINISLGCFGGVALGNLCF 133 (170)
T ss_pred hCCCCChHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999999886544
No 2
>MTH00174 ATP6 ATP synthase F0 subunit 6; Provisional
Probab=99.77 E-value=1.2e-18 Score=120.38 Aligned_cols=54 Identities=31% Similarity=0.505 Sum_probs=50.3
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy124 1 MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRLDQL 54 (60)
Q Consensus 1 ~~P~G~p~~l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~~~~~ 54 (60)
++|+|+|.++.|+++++|++|+++||+||++|||+||+|||+++++++++.+.+
T Consensus 150 ~~P~g~P~~L~pllv~IE~iS~~~RpiSLslRLfaNm~AGhill~li~~~~~~~ 203 (252)
T MTH00174 150 LMPQGAPLALAPLLTIIETLSYISRAISLGVRLAANISSGHLLFSIIASFAWKM 203 (252)
T ss_pred cCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999998876543
No 3
>MTH00073 ATP6 ATP synthase F0 subunit 6; Provisional
Probab=99.76 E-value=2.2e-18 Score=117.15 Aligned_cols=52 Identities=46% Similarity=0.727 Sum_probs=48.6
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHH
Q psy124 1 MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRLD 52 (60)
Q Consensus 1 ~~P~G~p~~l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~~~ 52 (60)
++|+|+|.++.|+++++|++|+++||+||++||++||+|||+++.++++...
T Consensus 129 ~~p~g~P~~l~p~m~~iE~is~~~RplsLs~RL~aNm~aGhill~ll~~~~~ 180 (227)
T MTH00073 129 LLPEGTPTLLIPILIIIETISLFIRPLALGVRLTANLTAGHLLIQLISTATL 180 (227)
T ss_pred hcCCCChHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999986543
No 4
>MTH00132 ATP6 ATP synthase F0 subunit 6; Provisional
Probab=99.76 E-value=2.6e-18 Score=116.96 Aligned_cols=52 Identities=44% Similarity=0.681 Sum_probs=48.9
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHH
Q psy124 1 MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRLD 52 (60)
Q Consensus 1 ~~P~G~p~~l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~~~ 52 (60)
++|+|+|.++.|+++++|++|+++||+||++||++||+|||+++.++++..+
T Consensus 129 ~~p~g~P~~l~p~l~~iE~iS~~~RP~sL~~RL~aNm~AGhlll~l~~~~~~ 180 (227)
T MTH00132 129 LLPEGTPTPLIPVLIIIETISLFIRPLALGVRLTANLTAGHLLIQLIATAAF 180 (227)
T ss_pred hcCCCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999987544
No 5
>MTH00179 ATP6 ATP synthase F0 subunit 6; Provisional
Probab=99.75 E-value=3.4e-18 Score=116.26 Aligned_cols=52 Identities=42% Similarity=0.667 Sum_probs=48.8
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHH
Q psy124 1 MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRLD 52 (60)
Q Consensus 1 ~~P~G~p~~l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~~~ 52 (60)
++|+|+|.++.|+++++|++|+++||+||++||++||+|||++++++++..+
T Consensus 129 ~~p~G~P~~l~p~m~~iE~is~~~RplsL~~RL~aNi~aGh~ll~l~~~~~~ 180 (227)
T MTH00179 129 LLPEGTPTPLIPMLVWIETISLLIRPLALGVRLTANITAGHLLMHLISSAVF 180 (227)
T ss_pred cCCCCChHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999987544
No 6
>MTH00120 ATP6 ATP synthase F0 subunit 6; Provisional
Probab=99.75 E-value=3.9e-18 Score=115.83 Aligned_cols=51 Identities=43% Similarity=0.705 Sum_probs=47.9
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHH
Q psy124 1 MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRL 51 (60)
Q Consensus 1 ~~P~G~p~~l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~~ 51 (60)
++|+|+|.++.|+++++|++|+++||+||++||++||+|||++++++++..
T Consensus 129 ~~p~g~P~~l~p~m~~iE~is~~~RplsLs~RLfaNm~AGhlll~l~~~~~ 179 (227)
T MTH00120 129 LLPEGTPTPLIPALILIETISLLIRPLALGVRLTANLTAGHLLIQLISTAT 179 (227)
T ss_pred HcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999987653
No 7
>MTH00005 ATP6 ATP synthase F0 subunit 6; Provisional
Probab=99.75 E-value=4.9e-18 Score=115.58 Aligned_cols=50 Identities=36% Similarity=0.634 Sum_probs=47.4
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHH
Q psy124 1 MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQR 50 (60)
Q Consensus 1 ~~P~G~p~~l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~ 50 (60)
++|+|+|.++.|+++++|++|+++||+||++||++||+|||++++++++.
T Consensus 133 ~~p~g~P~~l~p~l~~iE~is~~~RpisLs~RLf~Nm~aGhill~li~~~ 182 (231)
T MTH00005 133 LLPGGAPDWLNPFLVLIETISILVRPITLSFRLAANMSAGHIVLSLIGIY 182 (231)
T ss_pred cCCCCCchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999998754
No 8
>MTH00101 ATP6 ATP synthase F0 subunit 6; Validated
Probab=99.75 E-value=5.7e-18 Score=114.99 Aligned_cols=51 Identities=45% Similarity=0.681 Sum_probs=48.0
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHH
Q psy124 1 MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRL 51 (60)
Q Consensus 1 ~~P~G~p~~l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~~ 51 (60)
++|+|+|.++.|+++++|++|+++||+||++||++||+|||++++++++..
T Consensus 128 ~~p~g~P~~l~p~l~~iE~is~~~rp~sLs~RLf~Ni~aGhill~l~~~~~ 178 (226)
T MTH00101 128 FLPQGTPTPLIPMLVIIETISLFIQPMALAVRLTANITAGHLLIHLIGGAT 178 (226)
T ss_pred hCCCCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999987653
No 9
>MTH00172 ATP6 ATP synthase F0 subunit 6; Provisional
Probab=99.75 E-value=4.8e-18 Score=115.94 Aligned_cols=51 Identities=41% Similarity=0.548 Sum_probs=48.1
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHH
Q psy124 1 MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRL 51 (60)
Q Consensus 1 ~~P~G~p~~l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~~ 51 (60)
++|+|.|.++.|+++++|++|+++||+||++|||+||+|||+++.++++..
T Consensus 131 ~~p~g~P~~l~p~~~~iE~is~~~RpiSLs~RLf~Ni~aGhill~li~~~~ 181 (232)
T MTH00172 131 LMPSGAPLGLAPLLVLIETVSYISRAISLGVRLAANLSAGHLLFAILAGFG 181 (232)
T ss_pred hCCCCChHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999987654
No 10
>MTH00035 ATP6 ATP synthase F0 subunit 6; Validated
Probab=99.74 E-value=6.7e-18 Score=115.03 Aligned_cols=52 Identities=40% Similarity=0.604 Sum_probs=48.7
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHH
Q psy124 1 MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRLD 52 (60)
Q Consensus 1 ~~P~G~p~~l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~~~ 52 (60)
++|+|+|.++.|+++++|++|+++||+||++||++||+|||++++++++..+
T Consensus 132 ~~P~g~P~~L~p~m~~iE~is~~~RpisL~~RLf~Nm~aGhlll~l~~~~~~ 183 (229)
T MTH00035 132 LVPQGTPSFLIPLMVWIETLSLFAQPIALGLRLAANLTAGHLLIFLLSTAIW 183 (229)
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999987644
No 11
>MTH00176 ATP6 ATP synthase F0 subunit 6; Provisional
Probab=99.74 E-value=7.6e-18 Score=114.65 Aligned_cols=52 Identities=46% Similarity=0.745 Sum_probs=48.7
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHH
Q psy124 1 MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRLD 52 (60)
Q Consensus 1 ~~P~G~p~~l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~~~ 52 (60)
++|+|+|.++.|+++++|++|+++||+||++||++||+|||++++++++..+
T Consensus 131 ~~p~g~P~~l~p~l~~iE~is~~~RplsLs~RLf~Ni~aGhill~li~~~~~ 182 (229)
T MTH00176 131 LVPQGTPPLLNPFLVLIELVSLLIRPLTLAVRLAANLSAGHLLLGLLGAAMW 182 (229)
T ss_pred hcCCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999987653
No 12
>MTH00157 ATP6 ATP synthase F0 subunit 6; Provisional
Probab=99.74 E-value=7.9e-18 Score=114.11 Aligned_cols=52 Identities=46% Similarity=0.722 Sum_probs=48.7
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHH
Q psy124 1 MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRLD 52 (60)
Q Consensus 1 ~~P~G~p~~l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~~~ 52 (60)
++|+|+|.++.|+++++|++|+++||+||++||++||+|||+++.++++...
T Consensus 128 ~~p~g~P~~l~p~l~~iE~is~~~rPisLs~RLf~Ni~aGhill~li~~~~~ 179 (223)
T MTH00157 128 LVPQGTPPILMPFMVLIETISNLIRPGTLAVRLAANMIAGHLLLTLLGNTGP 179 (223)
T ss_pred HcCCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999999999999999999999987653
No 13
>TIGR01131 ATP_synt_6_or_A ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes). The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process.
Probab=99.73 E-value=1e-17 Score=113.66 Aligned_cols=52 Identities=48% Similarity=0.648 Sum_probs=48.5
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHH
Q psy124 1 MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRLD 52 (60)
Q Consensus 1 ~~P~G~p~~l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~~~ 52 (60)
+.|.|+|.++.|+++++|++|+++||+||++||++||+|||+++.++++..+
T Consensus 130 ~~p~g~P~~l~p~m~~iE~is~~~rp~sLs~RLf~Ni~aGhill~li~~~~~ 181 (226)
T TIGR01131 130 LVPSGTPLPLIPFLVIIETISYLARPISLSVRLFANISAGHLLLTLLSGLLF 181 (226)
T ss_pred HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999999999999999999999987543
No 14
>MTH00175 ATP6 ATP synthase F0 subunit 6; Provisional
Probab=99.73 E-value=1.6e-17 Score=114.06 Aligned_cols=52 Identities=37% Similarity=0.571 Sum_probs=48.4
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHH
Q psy124 1 MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRLD 52 (60)
Q Consensus 1 ~~P~G~p~~l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~~~ 52 (60)
++|.|.|.++.|+++++|++|+++||+||++|||+||+|||+++.++++..+
T Consensus 142 ~~P~g~P~~l~p~l~~iE~is~~~rpisLs~RLf~Ni~aGhill~li~~~~~ 193 (244)
T MTH00175 142 LMPGGAPLVLAPFLVLIETLSYLIRAISLGVRLAANISAGHLLFAILSGFAF 193 (244)
T ss_pred hCCCCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999976543
No 15
>MTH00173 ATP6 ATP synthase F0 subunit 6; Provisional
Probab=99.73 E-value=1.5e-17 Score=113.24 Aligned_cols=51 Identities=39% Similarity=0.635 Sum_probs=48.1
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHH
Q psy124 1 MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRL 51 (60)
Q Consensus 1 ~~P~G~p~~l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~~ 51 (60)
++|+|+|.++.|+++++|++|+++||+||++||++||+|||+++.++++..
T Consensus 131 ~~p~g~p~~l~p~l~~iE~is~~~RplsL~lRLf~Nm~aGhill~l~~~~~ 181 (231)
T MTH00173 131 LVPAGAPAGLNPFLVLIETVSILIRPLTLTVRLLANISAGHIVLTLIGNYL 181 (231)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999997653
No 16
>PF00119 ATP-synt_A: ATP synthase A chain; InterPro: IPR000568 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit A (or subunit 6) found in the F0 complex of F-ATPases. This subunit is a key component of the proton channel, and may play a direct role in the translocation of protons across the membrane. Catalysis in the F1 complex depends upon the rotation of the central stalk and F0 c-ring, which in turn is driven by the flux of protons through the membrane via the interface between the F0 c-ring and subunit A. The peripheral stalk links subunit A to the external surface of the F1 domain, and is thought to act as a stator to counter the tendency of subunit A and the F1 alpha(3)beta(3) catalytic portion to rotate with the central rotary element []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1ED3_C 1C17_M.
Probab=99.71 E-value=5.1e-18 Score=112.97 Aligned_cols=53 Identities=38% Similarity=0.636 Sum_probs=26.8
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHH
Q psy124 1 MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRLDQ 53 (60)
Q Consensus 1 ~~P~G~p~~l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~~~~ 53 (60)
++|+|+|.++.|+++++|++|+++||+||++||++||+|||+++.++++..+.
T Consensus 123 ~~~~g~p~~l~p~~~~iE~is~~~RplsLs~RL~~Ni~aGhill~l~~~~~~~ 175 (215)
T PF00119_consen 123 FVPPGTPLPLIPFMVPIELISELIRPLSLSLRLFGNIFAGHILLSLLSGFIWS 175 (215)
T ss_dssp ---------------------TTHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred cCCCCCCcchhhhhhHHHHHHHhcccchhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 47999999999999999999999999999999999999999999999976554
No 17
>MTH00087 ATP6 ATP synthase F0 subunit 6; Provisional
Probab=99.65 E-value=4.3e-16 Score=104.75 Aligned_cols=49 Identities=29% Similarity=0.504 Sum_probs=46.3
Q ss_pred CCCCCCchHHHHH-HHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHH
Q psy124 1 MIPSGTPNILIPI-IVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQ 49 (60)
Q Consensus 1 ~~P~G~p~~l~p~-~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~ 49 (60)
+.|+|.|.++.|+ ++++|++|+++||+||++||++||+|||+++.++..
T Consensus 109 ~~p~g~P~~L~~~~m~~iEiiS~l~RPlsLslRLf~Ni~aGhlil~li~~ 158 (195)
T MTH00087 109 YLSKGSDSFLKTFSMLFVEIVSELSRPLALTLRLTVNLMVGHLISSLLNF 158 (195)
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999998 999999999999999999999999999999999865
No 18
>PRK13417 F0F1 ATP synthase subunit A; Provisional
Probab=99.63 E-value=4.9e-16 Score=112.02 Aligned_cols=52 Identities=33% Similarity=0.452 Sum_probs=46.8
Q ss_pred CCCCCCchHHHHHHHHHHHH-HHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHH
Q psy124 1 MIPSGTPNILIPIIVIIEIT-RNIIRPIALAVRLTANLLASLVWLGDLKQRLD 52 (60)
Q Consensus 1 ~~P~G~p~~l~p~~~~iE~i-s~~~RPlsL~lRL~~N~~aG~il~~li~~~~~ 52 (60)
++|+|.|.++.|+++++|++ |+++||+||++|||+||+|||+++..+.++++
T Consensus 252 ~~p~g~P~~l~P~m~pIEliis~~~RPiSLslRLFgNI~AGhill~~l~~~i~ 304 (352)
T PRK13417 252 SVPNGVPLLLYPIMWPLEFIVSPMAKTFALTVRLLANMTAGHVIILALMGFIF 304 (352)
T ss_pred hCCCCCchhHHHHHHHHHHHHHHhhcchhHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 36899999999999999985 99999999999999999999999987765543
No 19
>PRK13419 F0F1 ATP synthase subunit A; Provisional
Probab=99.63 E-value=6.9e-16 Score=110.91 Aligned_cols=48 Identities=33% Similarity=0.365 Sum_probs=44.5
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHH
Q psy124 2 IPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQ 49 (60)
Q Consensus 2 ~P~G~p~~l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~ 49 (60)
.|+|+|+++.|+++++|++|+++||+||++|||+||+|||+++..+.+
T Consensus 231 l~~g~p~~L~p~mvpIEiIS~~~RPiSLslRLFaNm~AGhill~~L~~ 278 (342)
T PRK13419 231 LTGGTHWSLWIIMIPIEFIGLFTKPFALTVRLFANMTAGHIVILSLIF 278 (342)
T ss_pred cCCCCcHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhHHHHHHHHH
Confidence 478999999999999999999999999999999999999999876554
No 20
>KOG4665|consensus
Probab=99.60 E-value=1.7e-15 Score=105.39 Aligned_cols=57 Identities=44% Similarity=0.668 Sum_probs=53.8
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Q psy124 1 MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRLDQLNLA 57 (60)
Q Consensus 1 ~~P~G~p~~l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~~~~~~~~ 57 (60)
++|+|+|.++.|+++.+|++|+++||.+|++|+.+||.|||.++.++++..+.+...
T Consensus 150 f~p~Gtp~pL~p~lvlIE~iS~~~r~lsL~vRL~aNi~aGHLl~~iL~~~~~~~m~~ 206 (252)
T KOG4665|consen 150 FLPAGTPLPLIPFLVLIETISYLIRPLSLGVRLTANILAGHLLMNILGGLLFTMMLM 206 (252)
T ss_pred ECCCCCccchhHHHHHHHHHHHHhcchhhHhHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999998877653
No 21
>PRK05815 F0F1 ATP synthase subunit A; Validated
Probab=99.52 E-value=3.5e-14 Score=96.55 Aligned_cols=39 Identities=36% Similarity=0.550 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHH
Q psy124 12 PIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQR 50 (60)
Q Consensus 12 p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~ 50 (60)
|+++++|++|+++||+||++|||+||+|||+++.+++..
T Consensus 140 p~m~piE~is~~~rpisLs~RLf~Ni~aGhiil~l~~~~ 178 (227)
T PRK05815 140 PLLLPIEIISEFSRPISLSLRLFGNMLAGELILALIALL 178 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999543
No 22
>TIGR03306 altF1_A alternate F1F0 ATPase, F0 subunit A. and in principle may run in either direction. This model represents the F0 subunit A of this apparent second ATP synthase.
Probab=99.48 E-value=8.1e-14 Score=94.58 Aligned_cols=40 Identities=30% Similarity=0.432 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHH
Q psy124 11 IPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQR 50 (60)
Q Consensus 11 ~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~ 50 (60)
.|+++++|++|+++||+||++||||||+|||+++.++++.
T Consensus 141 ~p~m~pieiis~~~rpiSLs~RLfaNm~AGhill~l~~~~ 180 (217)
T TIGR03306 141 TPFMLPFNIIGELSRTLALAVRLFGNMMSGSMILAILLSI 180 (217)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999998754
No 23
>COG0356 AtpB F0F1-type ATP synthase, subunit a [Energy production and conversion]
Probab=99.48 E-value=8.4e-14 Score=96.57 Aligned_cols=45 Identities=29% Similarity=0.533 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy124 10 LIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRLDQL 54 (60)
Q Consensus 10 l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~~~~~ 54 (60)
+.|++.++|++|+++||+||++|||+||+|||+++.+++++....
T Consensus 158 ~~pl~~~~eiis~~a~piSLslRLFGNi~AG~iil~lia~~~~~~ 202 (246)
T COG0356 158 LAPLMLPLEIVSELAKPISLSLRLFGNILAGEILLALIAGLVPYF 202 (246)
T ss_pred cchhhhHHHHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999876554
No 24
>PRK13421 F0F1 ATP synthase subunit A; Provisional
Probab=99.47 E-value=8.5e-14 Score=94.81 Aligned_cols=39 Identities=18% Similarity=0.376 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHH
Q psy124 12 PIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQR 50 (60)
Q Consensus 12 p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~ 50 (60)
|+++++|++|+++||+||++||||||+|||+++.++++.
T Consensus 143 ~lm~pie~is~~~rpiSLs~RLfaNi~AGhill~li~~~ 181 (223)
T PRK13421 143 WVMIPLNLVEQLTRTFSLIVRLFGNVMSGVFVIGIVLSL 181 (223)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999999999999998654
No 25
>CHL00046 atpI ATP synthase CF0 A subunit
Probab=99.45 E-value=1.8e-13 Score=93.61 Aligned_cols=40 Identities=30% Similarity=0.497 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHH
Q psy124 11 IPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQR 50 (60)
Q Consensus 11 ~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~ 50 (60)
.|++.++|++|+++||+||++|||+||+|||+++.+++..
T Consensus 155 ~p~m~pie~is~~~rpiSLslRLfgNi~aGhill~li~~~ 194 (228)
T CHL00046 155 TPILLPINILEDFTKPLSLSFRLFGNILADELVVAVLVSL 194 (228)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999998754
No 26
>PRK13420 F0F1 ATP synthase subunit A; Provisional
Probab=99.34 E-value=2.1e-12 Score=88.17 Aligned_cols=38 Identities=26% Similarity=0.329 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHH
Q psy124 12 PIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQ 49 (60)
Q Consensus 12 p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~ 49 (60)
|++.|+|++|+++||+||++||||||+|||+++.++..
T Consensus 140 ~~L~Pi~iis~~~rPiSLslRLfaNi~AG~ii~~l~~~ 177 (226)
T PRK13420 140 PFLLPFHLISEITRTLALAVRLFGNIMSLELAALLVLL 177 (226)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhHhHHHHHHHHH
Confidence 67888999999999999999999999999998887653
No 27
>KOG4664|consensus
Probab=76.56 E-value=6.7 Score=28.00 Aligned_cols=52 Identities=6% Similarity=-0.103 Sum_probs=45.9
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHH
Q psy124 2 IPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRLDQ 53 (60)
Q Consensus 2 ~P~G~p~~l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~~~~ 53 (60)
.|++.+.++.+-.+.+|..+.++.+--..+|.-.|..++++++.++.+.-+.
T Consensus 123 ~~~p~evPlLnt~ILLsSgvtvtwahhsli~~~~~~~~~~ll~t~ll~vyFt 174 (261)
T KOG4664|consen 123 PVNPLEVPLLNTSILLSSGVTVTWAHHSLIEGNRKKATSSLLITVLLAVYFT 174 (261)
T ss_pred CCCCcCCcchhhHHHHhccchHHHHHHHHHhcchhhhhhhhHHHHHHHHHHH
Confidence 4567788899999999999999999999999999999999999988776544
No 28
>PF04825 Rad21_Rec8_N: N terminus of Rad21 / Rec8 like protein; InterPro: IPR006910 This domain represents a conserved N-terminal region found in eukaryotic cohesins of the Rad21, Rec8 and Scc1 families. Rad21/Rec8 like proteins mediate sister chromatid cohesion during mitosis and meiosis, as part of the cohesin complex []. Cohesion is necessary for homologous recombination (including double-strand break repair) and correct chromatid segregation. These proteins may also be involved in chromosome condensation. Dissociation at the metaphase to anaphase transition causes loss of cohesion and chromatid segregation [].; GO: 0005515 protein binding
Probab=38.52 E-value=34 Score=20.82 Aligned_cols=28 Identities=36% Similarity=0.577 Sum_probs=20.9
Q ss_pred HHHHHHHHHH-HHhHHHHHHhHHHHHHHH
Q psy124 17 IEITRNIIRP-IALAVRLTANLLASLVWL 44 (60)
Q Consensus 17 iE~is~~~RP-lsL~lRL~~N~~aG~il~ 44 (60)
-|++..+.+| ..+++|+.+|++-|-+.+
T Consensus 38 ~~~c~~I~~~~~~~sLRlss~LL~Gvv~I 66 (111)
T PF04825_consen 38 PKICEEIIEPENPLSLRLSSQLLYGVVRI 66 (111)
T ss_pred HHHHHHHhCCCcCeeHHHHhHHHHHHHHH
Confidence 4566666654 558999999999886654
No 29
>TIGR02862 spore_BofA pro-sigmaK processing inhibitor BofA. Members of this protein family are found only in endospore-forming bacteria, such as Bacillus subtilis and Clostridium tetani. Among such bacteria, it appears only Symbiobacterium thermophilum lacks a member of this family. The protein, designated BofA, is an integral membrane protein that regulates the proteolytic activation of the RNA polymerase sigma factor K.
Probab=27.99 E-value=1.4e+02 Score=17.70 Aligned_cols=39 Identities=15% Similarity=0.259 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHH
Q psy124 12 PIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQR 50 (60)
Q Consensus 12 p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~ 50 (60)
-.+...-......||+-...|+..|...|-+++..+-..
T Consensus 9 gli~l~l~~~~~~~plk~l~~l~i~~viG~ilL~~vN~~ 47 (83)
T TIGR02862 9 GLVILLLIVGAPVKPLRLIGKAAINLIIGALLLFIVNVF 47 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555566778999999999999999998887765443
No 30
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=27.03 E-value=35 Score=22.79 Aligned_cols=14 Identities=50% Similarity=0.622 Sum_probs=11.3
Q ss_pred HHhHHHHHHhHHHH
Q psy124 27 IALAVRLTANLLAS 40 (60)
Q Consensus 27 lsL~lRL~~N~~aG 40 (60)
.-+++|+++|++.-
T Consensus 127 ~ml~lR~l~NlF~~ 140 (268)
T PF08324_consen 127 QMLALRLLANLFSH 140 (268)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhhCC
Confidence 44789999999874
No 31
>PF06947 DUF1290: Protein of unknown function (DUF1290); InterPro: IPR009709 This family consists of several bacterial small basic proteins of around 100 residues in length. The function of this family is unknown.
Probab=25.01 E-value=58 Score=19.81 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=12.1
Q ss_pred HHHHHhHHHHHHhHHH
Q psy124 24 IRPIALAVRLTANLLA 39 (60)
Q Consensus 24 ~RPlsL~lRL~~N~~a 39 (60)
.--+.+++|+|.|...
T Consensus 66 aavv~fG~RiF~N~a~ 81 (88)
T PF06947_consen 66 AAVVVFGIRIFQNLAI 81 (88)
T ss_pred HHHHHHHHHHHhhHHH
Confidence 4447789999999753
No 32
>KOG1356|consensus
Probab=24.03 E-value=76 Score=26.42 Aligned_cols=35 Identities=26% Similarity=0.586 Sum_probs=30.5
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHH--HHhHHHHHH
Q psy124 1 MIPSGTPNILIPIIVIIEITRNIIRP--IALAVRLTA 35 (60)
Q Consensus 1 ~~P~G~p~~l~p~~~~iE~is~~~RP--lsL~lRL~~ 35 (60)
|+|+|+|--+-=+--.+.+...|+-| ++.++||+-
T Consensus 810 fIPAGaPHQVrNLkSCikVa~DFVSPE~v~ec~rLT~ 846 (889)
T KOG1356|consen 810 FIPAGAPHQVRNLKSCIKVAEDFVSPEHVSECFRLTQ 846 (889)
T ss_pred EecCCCcHHhhhhhhHHHHHHhhCChhhHHHHHHHHH
Confidence 68999999888888889999999998 888999864
Done!