Query psy124
Match_columns 60
No_of_seqs 114 out of 1132
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 18:15:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy124.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/124hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c17_M ATP synthase subunit A; 99.7 5.2E-18 1.8E-22 111.0 3.2 48 2-50 87-134 (177)
2 3ebb_A Phospholipase A2-activa 17.6 76 0.0026 21.4 2.3 18 27-44 165-182 (304)
3 3gae_A Protein DOA1; UFD3, CDC 16.1 51 0.0017 21.6 1.1 14 28-41 108-121 (253)
4 3l3f_X Protein DOA1, DOA1/UFD3 11.7 78 0.0027 22.2 1.1 14 29-42 218-231 (362)
5 3pst_A Protein DOA1; protein d 10.3 93 0.0032 22.5 1.1 14 29-42 281-294 (425)
6 2knc_A Integrin alpha-IIB; tra 8.1 2.9E+02 0.0098 14.4 3.3 20 37-56 19-38 (54)
7 2bec_B Sodium/hydrogen exchang 6.4 2.4E+02 0.0083 13.7 1.4 11 30-40 21-31 (43)
8 3h2d_A CHEC-like superfamily p 6.4 3E+02 0.01 16.3 2.1 17 30-46 89-105 (155)
9 2l8s_A Integrin alpha-1; trans 6.3 3.7E+02 0.013 14.0 3.3 19 38-56 17-35 (54)
10 3hm4_A Chemotaxis protein CHEX 6.3 3.1E+02 0.011 16.2 2.1 17 30-46 91-107 (156)
No 1
>1c17_M ATP synthase subunit A; membrane protein, helix, complex; NMR {Escherichia coli} SCOP: f.18.1.1
Probab=99.70 E-value=5.2e-18 Score=111.01 Aligned_cols=48 Identities=23% Similarity=0.305 Sum_probs=28.6
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHH
Q psy124 2 IPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQR 50 (60)
Q Consensus 2 ~P~G~p~~l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~ 50 (60)
.|.|+| ++.|+++++|++|+++||+||++|||+||+|||+++.++++.
T Consensus 87 ~P~g~p-~L~P~~v~iE~is~~~RP~sL~~RLfaNm~AGhlll~li~~~ 134 (177)
T 1c17_M 87 QPFNHW-AFIPVNLILEGVSLLSKPVSLGLRLFGNMYAGELIFILIAGL 134 (177)
T ss_dssp -------------------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcc-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888 999999999999999999999999999999999999998864
No 2
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=17.63 E-value=76 Score=21.38 Aligned_cols=18 Identities=22% Similarity=0.085 Sum_probs=14.0
Q ss_pred HHhHHHHHHhHHHHHHHH
Q psy124 27 IALAVRLTANLLASLVWL 44 (60)
Q Consensus 27 lsL~lRL~~N~~aG~il~ 44 (60)
.-+++|+++|++....--
T Consensus 165 ~ml~lR~l~NlF~~~~g~ 182 (304)
T 3ebb_A 165 QLLALRTFCNCFVGQAGQ 182 (304)
T ss_dssp HHHHHHHHHHGGGSHHHH
T ss_pred HHHHHHHHHHccCCchhH
Confidence 458999999999866543
No 3
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=16.10 E-value=51 Score=21.59 Aligned_cols=14 Identities=29% Similarity=0.375 Sum_probs=11.4
Q ss_pred HhHHHHHHhHHHHH
Q psy124 28 ALAVRLTANLLASL 41 (60)
Q Consensus 28 sL~lRL~~N~~aG~ 41 (60)
-+++|.++|++...
T Consensus 108 ml~lR~l~NlF~~~ 121 (253)
T 3gae_A 108 MLTVRILVNCFNNE 121 (253)
T ss_dssp HHHHHHHHHHTTCT
T ss_pred HHHHHHHHHcccCC
Confidence 37999999999833
No 4
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=11.72 E-value=78 Score=22.24 Aligned_cols=14 Identities=29% Similarity=0.339 Sum_probs=11.6
Q ss_pred hHHHHHHhHHHHHH
Q psy124 29 LAVRLTANLLASLV 42 (60)
Q Consensus 29 L~lRL~~N~~aG~i 42 (60)
+++|+++|++....
T Consensus 218 ltlR~laNlF~~~~ 231 (362)
T 3l3f_X 218 LTVRILVNCFNNEN 231 (362)
T ss_dssp HHHHHHHHHTTCTT
T ss_pred HHHHHHHHhccCcc
Confidence 78999999987544
No 5
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=10.31 E-value=93 Score=22.46 Aligned_cols=14 Identities=29% Similarity=0.339 Sum_probs=11.6
Q ss_pred hHHHHHHhHHHHHH
Q psy124 29 LAVRLTANLLASLV 42 (60)
Q Consensus 29 L~lRL~~N~~aG~i 42 (60)
+++|+++|++....
T Consensus 281 ltlR~laNlF~~~~ 294 (425)
T 3pst_A 281 LTVRILVNCFNNEN 294 (425)
T ss_dssp HHHHHHHHHTTCTT
T ss_pred HHHHHHHHhcCCcc
Confidence 78999999987544
No 6
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=8.12 E-value=2.9e+02 Score=14.37 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy124 37 LLASLVWLGDLKQRLDQLNL 56 (60)
Q Consensus 37 ~~aG~il~~li~~~~~~~~~ 56 (60)
..+|-+++.++....|+++.
T Consensus 19 vl~GLllL~li~~~LwK~GF 38 (54)
T 2knc_A 19 VLGGLLLLTILVLAMWKVGF 38 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCc
Confidence 35677777777777777654
No 7
>2bec_B Sodium/hydrogen exchanger 1; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens} PDB: 2e30_B
Probab=6.43 E-value=2.4e+02 Score=13.71 Aligned_cols=11 Identities=18% Similarity=0.344 Sum_probs=7.5
Q ss_pred HHHHHHhHHHH
Q psy124 30 AVRLTANLLAS 40 (60)
Q Consensus 30 ~lRL~~N~~aG 40 (60)
.-|++-+++||
T Consensus 21 h~~~~dhlmaG 31 (43)
T 2bec_B 21 HTQFLDHLLTG 31 (43)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhhhhhhhhc
Confidence 34677777776
No 8
>3h2d_A CHEC-like superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.86A {Shewanella oneidensis} PDB: 3iic_A*
Probab=6.43 E-value=3e+02 Score=16.27 Aligned_cols=17 Identities=12% Similarity=-0.220 Sum_probs=11.2
Q ss_pred HHHHHHhHHHHHHHHHH
Q psy124 30 AVRLTANLLASLVWLGD 46 (60)
Q Consensus 30 ~lRL~~N~~aG~il~~l 46 (60)
++.=.+||.+|+..-.+
T Consensus 89 al~Ei~Nii~G~~~~~l 105 (155)
T 3h2d_A 89 LVGEITNMVTGGAKNLL 105 (155)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44557888888776443
No 9
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=6.32 E-value=3.7e+02 Score=14.01 Aligned_cols=19 Identities=26% Similarity=0.205 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy124 38 LASLVWLGDLKQRLDQLNL 56 (60)
Q Consensus 38 ~aG~il~~li~~~~~~~~~ 56 (60)
.+|-+++.++....|+++.
T Consensus 17 l~GLLLL~Lii~~LwK~GF 35 (54)
T 2l8s_A 17 FAGLLLLMLLILALWKIGF 35 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCc
Confidence 4566666666666676654
No 10
>3hm4_A Chemotaxis protein CHEX; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; HET: MSE; 1.30A {Desulfovibrio desulfuricans subsp} PDB: 3h4y_A*
Probab=6.27 E-value=3.1e+02 Score=16.22 Aligned_cols=17 Identities=18% Similarity=0.114 Sum_probs=11.3
Q ss_pred HHHHHHhHHHHHHHHHH
Q psy124 30 AVRLTANLLASLVWLGD 46 (60)
Q Consensus 30 ~lRL~~N~~aG~il~~l 46 (60)
++.=.+||.+|+..-.+
T Consensus 91 al~Ei~Nii~G~~~~~l 107 (156)
T 3hm4_A 91 AVGEVTNMISGQARAAL 107 (156)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34457888888876443
Done!