RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy124
         (60 letters)



>1c17_M ATP synthase subunit A; membrane protein, helix, complex; NMR
           {Escherichia coli} SCOP: f.18.1.1
          Length = 177

 Score = 39.6 bits (93), Expect = 6e-06
 Identities = 10/39 (25%), Positives = 20/39 (51%)

Query: 1   MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLA 39
            +        IP+ +I+E    + +P++L +RL  N+ A
Sbjct: 85  TLQPFNHWAFIPVNLILEGVSLLSKPVSLGLRLFGNMYA 123


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.327    0.146    0.419 

Gapped
Lambda     K      H
   0.267   0.0721    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 924,602
Number of extensions: 42220
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 3
Length of query: 60
Length of database: 6,701,793
Length adjustment: 31
Effective length of query: 29
Effective length of database: 5,836,242
Effective search space: 169251018
Effective search space used: 169251018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.4 bits)