BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12401
(255 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P2D|A Chain A, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2D|B Chain B, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2D|C Chain C, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2D|D Chain D, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2N|A Chain A, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2N|B Chain B, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2N|C Chain C, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2N|D Chain D, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
Length = 358
Score = 178 bits (451), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 95/207 (45%), Positives = 128/207 (61%), Gaps = 22/207 (10%)
Query: 48 ESRVLVIYTGGTIGMIINNDGVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYLALPG 107
+ + V YTGGTIGM + G + P S + + P H RP+ ++
Sbjct: 23 KKSIYVAYTGGTIGMQRSEQGYI-PVSGHLQRQLALMPEFH-------RPEMPDF----- 69
Query: 108 LKHNKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAA 167
+ EY L+DSS+MT +DW +IA D+ +Y+++DGFVILHGTDT+ YTA+A
Sbjct: 70 ---------TIHEYTPLMDSSDMTPEDWQHIAEDIKAHYDDYDGFVILHGTDTMAYTASA 120
Query: 168 LSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAGNYVIPEVTVYFHNKLMRGNR 227
LSFM ENLGK VI+TGSQI + + RSDG N + +L +A NY I EVT++F+N+L RGNR
Sbjct: 121 LSFMLENLGKPVIVTGSQIPLAELRSDGQINLLNALYVAANYPINEVTLFFNNRLYRGNR 180
Query: 228 TIKTSTYEFDAFISPNCLPLVQVGIEI 254
T K FDAF SPN PL++ GI I
Sbjct: 181 TTKAHADGFDAFASPNLPPLLEAGIHI 207
>pdb|2HIM|A Chain A, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2HIM|B Chain B, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2HIM|C Chain C, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2HIM|D Chain D, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
Length = 358
Score = 178 bits (451), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 95/207 (45%), Positives = 128/207 (61%), Gaps = 22/207 (10%)
Query: 48 ESRVLVIYTGGTIGMIINNDGVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYLALPG 107
+ + V YTGGTIGM + G + P S + + P H RP+ ++
Sbjct: 23 KKSIYVAYTGGTIGMQRSEQGYI-PVSGHLQRQLALMPEFH-------RPEMPDF----- 69
Query: 108 LKHNKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAA 167
+ EY L+DSS+MT +DW +IA D+ +Y+++DGFVILHGTDT+ YTA+A
Sbjct: 70 ---------TIHEYTPLMDSSDMTPEDWQHIAEDIKAHYDDYDGFVILHGTDTMAYTASA 120
Query: 168 LSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAGNYVIPEVTVYFHNKLMRGNR 227
LSFM ENLGK VI+TGSQI + + RSDG N + +L +A NY I EVT++F+N+L RGNR
Sbjct: 121 LSFMLENLGKPVIVTGSQIPLAELRSDGQINLLNALYVAANYPINEVTLFFNNRLYRGNR 180
Query: 228 TIKTSTYEFDAFISPNCLPLVQVGIEI 254
T K FDAF SPN PL++ GI I
Sbjct: 181 TAKAHADGFDAFASPNLPPLLEAGIHI 207
>pdb|2OCD|A Chain A, Crystal Structure Of L-Asparaginase I From Vibrio Cholerae
O1 Biovar Eltor Str. N16961
pdb|2OCD|B Chain B, Crystal Structure Of L-Asparaginase I From Vibrio Cholerae
O1 Biovar Eltor Str. N16961
pdb|2OCD|C Chain C, Crystal Structure Of L-Asparaginase I From Vibrio Cholerae
O1 Biovar Eltor Str. N16961
pdb|2OCD|D Chain D, Crystal Structure Of L-Asparaginase I From Vibrio Cholerae
O1 Biovar Eltor Str. N16961
Length = 337
Score = 164 bits (416), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 92/205 (44%), Positives = 123/205 (60%), Gaps = 22/205 (10%)
Query: 51 VLVIYTGGTIGMIINNDGVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYLALPGLKH 110
+ + YTGGTIG ++ G + P + ++ + P H RP+
Sbjct: 6 IYIAYTGGTIGXKKSDHGYV-PVAGFXEKQLASXPEFH-------RPEXP---------- 47
Query: 111 NKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSF 170
L+ + EYD L DSS+ T DW IA D+ NY+ +DGFVILHGTDT YTA+ALSF
Sbjct: 48 ----LFTIHEYDPLXDSSDXTPADWQLIADDIAANYDKYDGFVILHGTDTXAYTASALSF 103
Query: 171 MFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAGNYVIPEVTVYFHNKLMRGNRTIK 230
FENLGK VI+TGSQI + RSDG N + +L +A NY I EVT++F+N+L RGNR+ K
Sbjct: 104 XFENLGKPVIVTGSQIPLADLRSDGQANLLNALHVAANYPINEVTLFFNNRLXRGNRSRK 163
Query: 231 TSTYEFDAFISPNCLPLVQVGIEID 255
+ F AF SPN PL++ GI I+
Sbjct: 164 SHADGFSAFSSPNLPPLLEAGINIE 188
>pdb|3NTX|A Chain A, Crystal Structure Of L-Asparaginase I From Yersinia Pestis
pdb|3NTX|B Chain B, Crystal Structure Of L-Asparaginase I From Yersinia Pestis
Length = 341
Score = 159 bits (402), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 123/207 (59%), Gaps = 22/207 (10%)
Query: 48 ESRVLVIYTGGTIGMIINNDGVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYLALPG 107
+ + V YTGGTIG +++G + P S + + P H RP+ ++
Sbjct: 6 KKSIYVAYTGGTIGXQRSDNGYI-PVSGHLQRQLALXPEFH-------RPEXPDF----- 52
Query: 108 LKHNKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAA 167
+ EY L+DSS+ T +DW +IA+D+ NY+ +DGFVILHGTDT +TA+A
Sbjct: 53 ---------TIHEYAPLIDSSDXTPEDWQHIANDIQQNYDLYDGFVILHGTDTXAFTASA 103
Query: 168 LSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAGNYVIPEVTVYFHNKLMRGNR 227
LSF ENL K VIITGSQI + + RSDG N + +L LA N+ + EV+++F+N+L RGNR
Sbjct: 104 LSFXLENLAKPVIITGSQIPLAELRSDGQTNLLNALYLAANHPVNEVSLFFNNQLFRGNR 163
Query: 228 TIKTSTYEFDAFISPNCLPLVQVGIEI 254
T K FD F SPN L++ GI I
Sbjct: 164 TTKAHADGFDTFASPNLSVLLEAGIHI 190
>pdb|2D6F|A Chain A, Crystal Structure Of Glu-Trna(Gln) Amidotransferase In The
Complex With Trna(Gln)
pdb|2D6F|B Chain B, Crystal Structure Of Glu-Trna(Gln) Amidotransferase In The
Complex With Trna(Gln)
Length = 435
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 99/216 (45%), Gaps = 39/216 (18%)
Query: 51 VLVIYTGGTIGMIIN-NDGVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYLALPGLK 109
V +I TGGT+ II+ G + P + +R NP + D+ +R R
Sbjct: 93 VSIISTGGTVASIIDYRTGAVHPAFTA-DDLLRANPELLDIANIRGR------------- 138
Query: 110 HNKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFDNYEN-FDGFVILHGTDTLCYTAAAL 168
++ +L S NM + W+ A V+ ++ DG V+ HGTDT+ YT+AAL
Sbjct: 139 ----AVFNIL-------SENMKPEYWVETARAVYGEIKDGADGVVVAHGTDTMHYTSAAL 187
Query: 169 SFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAGNYVIPEVTVYFHNK------- 221
SFM V+ TG+Q S +P SD N S + A I EVTV H
Sbjct: 188 SFMLRT-PVPVVFTGAQRSSDRPSSDASLNIQCS-VRAATSEIAEVTVCMHATMDDLSCH 245
Query: 222 LMRGNRTIKTSTYEFDAFISPNCLPLVQV---GIEI 254
L RG + K T D F S N LPL +V GI+I
Sbjct: 246 LHRGVKVRKMHTSRRDTFRSMNALPLAEVTPDGIKI 281
>pdb|1WNF|A Chain A, Crystal Structure Of Ph0066 From Pyrococcus Horikoshii
pdb|1WNF|B Chain B, Crystal Structure Of Ph0066 From Pyrococcus Horikoshii
Length = 328
Score = 73.6 bits (179), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 63/119 (52%), Gaps = 1/119 (0%)
Query: 125 LDSSNMTVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGS 184
+DS+ + DW +A ++ +DG VI HGTDT+ Y+A+ LSFM N +++TGS
Sbjct: 50 VDSTLIQPSDWERLAKEIEKEVWEYDGIVITHGTDTMAYSASMLSFMLRNPPIPIVLTGS 109
Query: 185 QISIFQPRSDGVDNFIASLILAGNYVIPEVTVYFHNKLMRGNRTIKTSTYEFDAFISPN 243
+ I + SD N +L I + + F+ K+M G R K + FDAF S N
Sbjct: 110 MLPITEKNSDAPFNLRTALEFV-KLGIRGIYIAFNGKVMLGVRASKIRSMGFDAFESIN 167
>pdb|1ZQ1|A Chain A, Structure Of Gatde Trna-Dependent Amidotransferase From
Pyrococcus Abyssi
pdb|1ZQ1|B Chain B, Structure Of Gatde Trna-Dependent Amidotransferase From
Pyrococcus Abyssi
Length = 438
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 63/123 (51%), Gaps = 7/123 (5%)
Query: 135 WINIASDVFDNYENFD-GFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQISIFQPRS 193
W+ IA +V + D G V+ HGTDT YTAAALSF NLGK V++ G+Q S +P S
Sbjct: 154 WVKIAHEVAKALNSGDYGVVVAHGTDTXGYTAAALSFXLRNLGKPVVLVGAQRSSDRPSS 213
Query: 194 DGVDNFIASLILAGNYVIPEVTVYF------HNKLMRGNRTIKTSTYEFDAFISPNCLPL 247
D N I S+ A + V V + RG + K T DAF S N +P+
Sbjct: 214 DAAXNLICSVRXATSEVAEVXVVXHGETGDTYCLAHRGTKVRKXHTSRRDAFRSINDVPI 273
Query: 248 VQV 250
++
Sbjct: 274 AKI 276
>pdb|1WLS|A Chain A, Crystal Structure Of L-Asparaginase I Homologue Protein
From Pyrococcus Horikoshii
pdb|1WLS|B Chain B, Crystal Structure Of L-Asparaginase I Homologue Protein
From Pyrococcus Horikoshii
Length = 328
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 70/144 (48%), Gaps = 4/144 (2%)
Query: 100 SEYLALPGLKHNKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFDNYENFDGFVILHGTD 159
S+ L L G+ ++ + L +DS+ + DW +A ++ +DG VI HGTD
Sbjct: 28 SKILKLAGISSEAKIEARDLXN---VDSTLIQPSDWERLAKEIEKEVWEYDGIVITHGTD 84
Query: 160 TLCYTAAALSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAGNYVIPEVTVYFH 219
T Y+A+ LSF N +++TGS + I + SD N +L I + + F+
Sbjct: 85 TXAYSASXLSFXLRNPPIPIVLTGSXLPITEKNSDAPFNLRTALEFV-KLGIRGIYIAFN 143
Query: 220 NKLMRGNRTIKTSTYEFDAFISPN 243
K+ G R K + FDAF S N
Sbjct: 144 GKVXLGVRASKIRSXGFDAFESIN 167
>pdb|3NXK|A Chain A, Crystal Structure Of Probable Cytoplasmic L-Asparaginase
From Campylobacter Jejuni
pdb|3NXK|B Chain B, Crystal Structure Of Probable Cytoplasmic L-Asparaginase
From Campylobacter Jejuni
pdb|3NXK|C Chain C, Crystal Structure Of Probable Cytoplasmic L-Asparaginase
From Campylobacter Jejuni
pdb|3NXK|D Chain D, Crystal Structure Of Probable Cytoplasmic L-Asparaginase
From Campylobacter Jejuni
pdb|3NXK|E Chain E, Crystal Structure Of Probable Cytoplasmic L-Asparaginase
From Campylobacter Jejuni
pdb|3NXK|F Chain F, Crystal Structure Of Probable Cytoplasmic L-Asparaginase
From Campylobacter Jejuni
pdb|3NXK|G Chain G, Crystal Structure Of Probable Cytoplasmic L-Asparaginase
From Campylobacter Jejuni
pdb|3NXK|H Chain H, Crystal Structure Of Probable Cytoplasmic L-Asparaginase
From Campylobacter Jejuni
Length = 334
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 89/205 (43%), Gaps = 25/205 (12%)
Query: 42 NQTESLESRVLVIYTGGTIGMIINNDGVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSE 101
N + +SR+ ++ TGGTI I D +A + I + L+ V +R+ D S
Sbjct: 2 NAXKKAKSRIAILGTGGTIAGFI--DSTIA-TTGYAAGAIDIDVLIKAVPQIRDLADIS- 57
Query: 102 YLALPGLKHNKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFDNY-ENFDGFVILHGTDT 160
E + +DSSN + W+ +A + + E DG VI HGTDT
Sbjct: 58 -----------------WEQIANIDSSNXCDEIWLRLAKKIAKLFAEGIDGVVITHGTDT 100
Query: 161 LCYTAAALSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAGNYVIPE--VTVYF 218
TA L+ ++ K V++ G+ +DG N ++ L N V V
Sbjct: 101 XEETAYFLNLTIKS-DKPVVLVGAXRPSTAISADGPKNLYNAVALVVNKEAKNKGVXVAI 159
Query: 219 HNKLMRGNRTIKTSTYEFDAFISPN 243
++K++ +KT + DAF SP+
Sbjct: 160 NDKILSARGVVKTHSLNVDAFSSPD 184
>pdb|3ECA|A Chain A, Crystal Structure Of Escherichia Coli L-Asparaginase, An
Enzyme Used In Cancer Therapy
pdb|3ECA|B Chain B, Crystal Structure Of Escherichia Coli L-Asparaginase, An
Enzyme Used In Cancer Therapy
pdb|3ECA|C Chain C, Crystal Structure Of Escherichia Coli L-Asparaginase, An
Enzyme Used In Cancer Therapy
pdb|3ECA|D Chain D, Crystal Structure Of Escherichia Coli L-Asparaginase, An
Enzyme Used In Cancer Therapy
pdb|1NNS|A Chain A, L-asparaginase Of E. Coli In C2 Space Group And 1.95 A
Resolution
pdb|1NNS|B Chain B, L-asparaginase Of E. Coli In C2 Space Group And 1.95 A
Resolution
Length = 326
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 3/125 (2%)
Query: 125 LDSSNMTVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGS 184
+ S +M + W+ +A + + + DGFVI HGTDT+ TA L + K V++ G+
Sbjct: 56 IGSQDMNDNVWLTLAKKINTDCDKTDGFVITHGTDTMEETAYFLDLTVK-CDKPVVMVGA 114
Query: 185 QISIFQPRSDGVDNFIASLILAGNYVIPE--VTVYFHNKLMRGNRTIKTSTYEFDAFISP 242
+DG N +++ A + V V ++ ++ G KT+T + F S
Sbjct: 115 MRPSTSMSADGPFNLYNAVVTAADKASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSV 174
Query: 243 NCLPL 247
N PL
Sbjct: 175 NYGPL 179
>pdb|1HO3|A Chain A, Crystal Structure Analysis Of E. Coli L-asparaginase Ii
(y25f Mutant)
pdb|1HO3|B Chain B, Crystal Structure Analysis Of E. Coli L-asparaginase Ii
(y25f Mutant)
Length = 326
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 3/125 (2%)
Query: 125 LDSSNMTVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGS 184
+ S +M + W+ +A + + + DGFVI HGTDT+ TA L + K V++ G+
Sbjct: 56 IGSQDMNDNVWLTLAKKINTDCDKTDGFVITHGTDTMEETAYFLDLTVK-CDKPVVMVGA 114
Query: 185 QISIFQPRSDGVDNFIASLILAGNYVIPE--VTVYFHNKLMRGNRTIKTSTYEFDAFISP 242
+DG N +++ A + V V ++ ++ G KT+T + F S
Sbjct: 115 MRPSTSMSADGPFNLYNAVVTAADKASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSV 174
Query: 243 NCLPL 247
N PL
Sbjct: 175 NYGPL 179
>pdb|1IHD|A Chain A, Crystal Structure Of Trigonal Form Of D90e Mutant Of
Escherichia Coli Asparaginase Ii
pdb|1IHD|C Chain C, Crystal Structure Of Trigonal Form Of D90e Mutant Of
Escherichia Coli Asparaginase Ii
pdb|1JAZ|A Chain A, Crystal Structure Of Monoclinic Form Of D90e Mutant Of
Escherichia Coli Asparaginase Ii
pdb|1JAZ|B Chain B, Crystal Structure Of Monoclinic Form Of D90e Mutant Of
Escherichia Coli Asparaginase Ii
pdb|1JJA|A Chain A, Crystal Structure Of Orthorhombic Form Of D90e Mutant Of
Escherichia Coli L-Asparaginase Ii
pdb|1JJA|B Chain B, Crystal Structure Of Orthorhombic Form Of D90e Mutant Of
Escherichia Coli L-Asparaginase Ii
pdb|1JJA|C Chain C, Crystal Structure Of Orthorhombic Form Of D90e Mutant Of
Escherichia Coli L-Asparaginase Ii
pdb|1JJA|D Chain D, Crystal Structure Of Orthorhombic Form Of D90e Mutant Of
Escherichia Coli L-Asparaginase Ii
pdb|1JJA|E Chain E, Crystal Structure Of Orthorhombic Form Of D90e Mutant Of
Escherichia Coli L-Asparaginase Ii
pdb|1JJA|F Chain F, Crystal Structure Of Orthorhombic Form Of D90e Mutant Of
Escherichia Coli L-Asparaginase Ii
Length = 326
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 3/125 (2%)
Query: 125 LDSSNMTVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGS 184
+ S +M + W+ +A + + + DGFVI HGT+T+ TA L + K V++ G+
Sbjct: 56 IGSQDMNDNVWLTLAKKINTDCDKTDGFVITHGTETMEETAYFLDLTVK-CDKPVVMVGA 114
Query: 185 QISIFQPRSDGVDNFIASLILAGNYVIPE--VTVYFHNKLMRGNRTIKTSTYEFDAFISP 242
+DG N +++ A + V V ++ ++ G KT+T + F S
Sbjct: 115 MRPSTSMSADGPFNLYNAVVTAADKASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSV 174
Query: 243 NCLPL 247
N PL
Sbjct: 175 NYGPL 179
>pdb|4ECA|A Chain A, Asparaginase From E. Coli, Mutant T89v With Covalently
Bound Aspartate
pdb|4ECA|B Chain B, Asparaginase From E. Coli, Mutant T89v With Covalently
Bound Aspartate
pdb|4ECA|C Chain C, Asparaginase From E. Coli, Mutant T89v With Covalently
Bound Aspartate
pdb|4ECA|D Chain D, Asparaginase From E. Coli, Mutant T89v With Covalently
Bound Aspartate
Length = 326
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 3/125 (2%)
Query: 125 LDSSNMTVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGS 184
+ S +M + W+ +A + + + DGFVI HG DT+ TA L + K V++ G+
Sbjct: 56 IGSQDMNDNVWLTLAKKINTDCDKTDGFVITHGVDTMEETAYFLDLTVK-CDKPVVMVGA 114
Query: 185 QISIFQPRSDGVDNFIASLILAGNYVIPE--VTVYFHNKLMRGNRTIKTSTYEFDAFISP 242
+DG N +++ A + V V ++ ++ G KT+T + F S
Sbjct: 115 MRPSTSMSADGPFNLYNAVVTAADKASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSV 174
Query: 243 NCLPL 247
N PL
Sbjct: 175 NYGPL 179
>pdb|3PGA|1 Chain 1, Structural Characterization Of Pseudomonas 7a Glutaminase-
Asparaginase
pdb|3PGA|2 Chain 2, Structural Characterization Of Pseudomonas 7a Glutaminase-
Asparaginase
pdb|3PGA|3 Chain 3, Structural Characterization Of Pseudomonas 7a Glutaminase-
Asparaginase
pdb|3PGA|4 Chain 4, Structural Characterization Of Pseudomonas 7a Glutaminase-
Asparaginase
Length = 337
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 125 LDSSNMTVDDWINIASDVFD--NYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIIT 182
+ S ++T DD + + V + + + DG VI HGTDTL TA L N K +++
Sbjct: 65 IASESITNDDLLKLGKRVAELADSNDVDGIVITHGTDTLEETAYFLDLTL-NTDKPIVVV 123
Query: 183 GSQISIFQPRSDGVDNFIASLILAGN 208
GS +DG+ N ++ +A N
Sbjct: 124 GSMRPGTAMSADGMLNLYNAVAVASN 149
>pdb|4PGA|A Chain A, Glutaminase-asparaginase From Pseudomonas 7a
pdb|4PGA|B Chain B, Glutaminase-asparaginase From Pseudomonas 7a
Length = 337
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 5/121 (4%)
Query: 125 LDSSNMTVDDWINIASDVFD--NYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIIT 182
+ S ++T DD + + V + + + DG VI HGTDTL TA L+ + + K +++
Sbjct: 65 IASESITNDDLLKLGKRVAELADSNDVDGIVITHGTDTLEETAYFLN-LVQKTDKPIVVV 123
Query: 183 GSQISIFQPRSDGVDNFIASLILAGNY--VIPEVTVYFHNKLMRGNRTIKTSTYEFDAFI 240
GS +DG+ N ++ +A N V V ++++ G K+ + +AF
Sbjct: 124 GSMRPGTAMSADGMLNLYNAVAVASNKDSRGKGVLVTMNDEIQSGRDVSKSINIKTEAFK 183
Query: 241 S 241
S
Sbjct: 184 S 184
>pdb|1DJO|A Chain A, Crystal Structure Of Pseudomonas 7a
Glutaminase-Asparaginase With The Inhibitor Donv
Covalently Bound In The Active Site
pdb|1DJO|B Chain B, Crystal Structure Of Pseudomonas 7a
Glutaminase-Asparaginase With The Inhibitor Donv
Covalently Bound In The Active Site
pdb|1DJP|A Chain A, Crystal Structure Of Pseudomonas 7a
Glutaminase-Asparaginase With The Inhibitor Don
Covalently Bound In The Active Site
pdb|1DJP|B Chain B, Crystal Structure Of Pseudomonas 7a
Glutaminase-Asparaginase With The Inhibitor Don
Covalently Bound In The Active Site
Length = 330
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 125 LDSSNMTVDDWINIASDVFD--NYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIIT 182
+ S ++T DD + + V + + + DG VI HGTDTL TA L+ + + K +++
Sbjct: 58 IASESITNDDLLKLGKRVAELADSNDVDGIVITHGTDTLEETAYFLN-LVQKTDKPIVVV 116
Query: 183 GSQISIFQPRSDGVDNFIASLILAGN 208
GS +DG+ N ++ +A N
Sbjct: 117 GSMRPGTAMSADGMLNLYNAVAVASN 142
>pdb|1WSA|A Chain A, Structure Of L-Asparaginase Ii Precursor
pdb|1WSA|B Chain B, Structure Of L-Asparaginase Ii Precursor
Length = 330
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 5/129 (3%)
Query: 120 EYDSLLDSSNMTVDDWINIASDVFD--NYENFDGFVILHGTDTLCYTAAALSFMFENLGK 177
E S + S MT W+ +A V + + + +I HGTDT+ TA L+ ++ K
Sbjct: 53 EQISSIGSQEMTGKVWLKLAKRVNELLAQKETEAVIITHGTDTMEETAFFLNLTVKS-QK 111
Query: 178 TVIITGSQISIFQPRSDGVDNFIASLILAGNYVIPE--VTVYFHNKLMRGNRTIKTSTYE 235
V++ G+ +DG N ++ +A N V + ++++ K +T
Sbjct: 112 PVVLVGAMRPGSSMSADGPMNLYNAVNVAINKASTNKGVVIVMNDEIHAAREATKLNTTA 171
Query: 236 FDAFISPNC 244
+AF SPN
Sbjct: 172 VNAFASPNT 180
>pdb|2WLT|A Chain A, The Crystal Structure Of Helicobacter Pylori
L-Asparaginase At 1.4 A Resolution
pdb|2WT4|A Chain A, Room Temperature Crystal Structure Of Helicobacter Pylori
L- Asparaginase At 1.8 A Resolution
Length = 332
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 10/146 (6%)
Query: 104 ALPGLKHNKRVLYKVLEYDSLLDSSNMTVDDWINIAS---DVFDNYENFDGFVILHGTDT 160
A+P L R+ E S + S +M + W +A ++ D+ G VI HGTDT
Sbjct: 42 AIPSLNKIARIQG---EQVSNIGSQDMNEEIWFKLAQRAQELLDD-SRIQGVVITHGTDT 97
Query: 161 LCYTAAALSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAGNYVIPE--VTVYF 218
L +A L+ + + K V++ G+ + +DG N ++ +A N V V
Sbjct: 98 LEESAYFLNLVLHST-KPVVLVGAMRNASSLSADGALNLYEAVSVAVNEKSANKGVLVVM 156
Query: 219 HNKLMRGNRTIKTSTYEFDAFISPNC 244
+ + +KT T F + N
Sbjct: 157 DDTIFSVREVVKTHTTHVSTFKALNS 182
>pdb|1O7J|A Chain A, Atomic Resolution Structure Of Erwinia Chrysanthemi
L-Asparaginase
pdb|1O7J|B Chain B, Atomic Resolution Structure Of Erwinia Chrysanthemi
L-Asparaginase
pdb|1O7J|C Chain C, Atomic Resolution Structure Of Erwinia Chrysanthemi
L-Asparaginase
pdb|1O7J|D Chain D, Atomic Resolution Structure Of Erwinia Chrysanthemi
L-Asparaginase
Length = 327
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 125 LDSSNMTVDDWINIASDVFD--NYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIIT 182
+ S NMT D + ++ V + ++ DG VI HGTDT+ +A L ++ K V+
Sbjct: 60 MASENMTGDVVLKLSQRVNELLARDDVDGVVITHGTDTVEESAYFLHLTVKS-DKPVVFV 118
Query: 183 GSQISIFQPRSDGVDNFIASLILAGN 208
+ +DG N + ++ +AG+
Sbjct: 119 AAMRPATAISADGPMNLLEAVRVAGD 144
>pdb|1HFJ|A Chain A, Asparaginase From Erwinia Chrysanthemi, Hexagonal Form
With Sulfate
pdb|1HFJ|C Chain C, Asparaginase From Erwinia Chrysanthemi, Hexagonal Form
With Sulfate
pdb|1HFK|A Chain A, Asparaginase From Erwinia Chrysanthemi, Hexagonal Form
With Weak Sulfate
pdb|1HFK|C Chain C, Asparaginase From Erwinia Chrysanthemi, Hexagonal Form
With Weak Sulfate
pdb|1HG0|A Chain A, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And Succinic Acid
pdb|1HG0|B Chain B, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And Succinic Acid
pdb|1HG0|C Chain C, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And Succinic Acid
pdb|1HG0|D Chain D, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And Succinic Acid
pdb|1HG1|A Chain A, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And D-Aspartate
pdb|1HG1|B Chain B, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And D-Aspartate
pdb|1HG1|C Chain C, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And D-Aspartate
pdb|1HG1|D Chain D, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And D-Aspartate
pdb|1JSL|A Chain A, Crystal Structure Of Erwinia Chrysanthemi L-asparaginase
Complexed With 6-hydroxy-d-norleucine
pdb|1JSL|B Chain B, Crystal Structure Of Erwinia Chrysanthemi L-asparaginase
Complexed With 6-hydroxy-d-norleucine
pdb|1JSL|C Chain C, Crystal Structure Of Erwinia Chrysanthemi L-asparaginase
Complexed With 6-hydroxy-d-norleucine
pdb|1JSL|D Chain D, Crystal Structure Of Erwinia Chrysanthemi L-asparaginase
Complexed With 6-hydroxy-d-norleucine
pdb|1JSR|A Chain A, Crystal Structure Of Erwinia Chrysanthemi L-Asparaginase
Complexed With 6-Hydroxy-L-Norleucine
pdb|1JSR|B Chain B, Crystal Structure Of Erwinia Chrysanthemi L-Asparaginase
Complexed With 6-Hydroxy-L-Norleucine
pdb|1JSR|C Chain C, Crystal Structure Of Erwinia Chrysanthemi L-Asparaginase
Complexed With 6-Hydroxy-L-Norleucine
pdb|1JSR|D Chain D, Crystal Structure Of Erwinia Chrysanthemi L-Asparaginase
Complexed With 6-Hydroxy-L-Norleucine
pdb|1HFW|A Chain A, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And L-Glutamate
pdb|1HFW|B Chain B, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And L-Glutamate
pdb|1HFW|C Chain C, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And L-Glutamate
pdb|1HFW|D Chain D, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And L-Glutamate
Length = 327
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 125 LDSSNMTVDDWINIASDVFD--NYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIIT 182
+ S NMT D + ++ V + ++ DG VI HGTDT+ +A L ++ K V+
Sbjct: 60 MASENMTGDVVLKLSQRVNELLARDDVDGVVITHGTDTVEESAYFLHLTVKS-DKPVVFV 118
Query: 183 GSQISIFQPRSDGVDNFIASLILAGN 208
+ +DG N + ++ +AG+
Sbjct: 119 AAMRPATAISADGPMNLLEAVRVAGD 144
>pdb|3OZH|A Chain A, Crystal Structure Of Beta-LactamaseD-Alanine
Carboxypeptidase From Yersinia Pestis
pdb|3RJU|A Chain A, Crystal Structure Of Beta-LactamaseD-Alanine
Carboxypeptidase From Yersinia Pestis Complexed With
Citrate
Length = 351
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 173 ENLGKTVIITGSQISIFQPRSDGVDNFIASLI 204
+N+G V++T SQ++ F SDGV+ +A L+
Sbjct: 319 KNIGVFVVVTRSQLTKFSNXSDGVNQLVAELV 350
>pdb|1AGX|A Chain A, Refined Crystal Structure Of Acinetobacter
Glutaminasificans Glutaminase-Asparaginase
Length = 331
Score = 30.4 bits (67), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 71/159 (44%), Gaps = 26/159 (16%)
Query: 51 VLVIYTGGTIGMIINNDGVLAPQSNKFKENIRQNPLMHDVDYL-RNRPDKSEYLALPGLK 109
V+++ TGGTI G A +N + + P VD L + P ++ + G++
Sbjct: 4 VVIVATGGTIA------GAGASSTNSATYSAAKVP----VDALIKAVPQVNDLANITGIQ 53
Query: 110 HNKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFD--NYENFDGFVILHGTDTLCYTAAA 167
+ + S ++T + +++A V D + +G VI HGTDT+ TA
Sbjct: 54 ALQ------------VASESITDKELLSLARQVNDLVKKPSVNGVVITHGTDTMEETAFF 101
Query: 168 LSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILA 206
L+ + K +++ GS +DG N +++ LA
Sbjct: 102 LNLVVHT-DKPIVLVGSMRPSTALSADGPLNLYSAVALA 139
>pdb|2JK0|A Chain A, Structural And Functional Insights Into Erwinia Carotovora
L-Asparaginase
pdb|2JK0|B Chain B, Structural And Functional Insights Into Erwinia Carotovora
L-Asparaginase
pdb|2JK0|C Chain C, Structural And Functional Insights Into Erwinia Carotovora
L-Asparaginase
pdb|2JK0|D Chain D, Structural And Functional Insights Into Erwinia Carotovora
L-Asparaginase
pdb|2JK0|E Chain E, Structural And Functional Insights Into Erwinia Carotovora
L-Asparaginase
pdb|2JK0|F Chain F, Structural And Functional Insights Into Erwinia Carotovora
L-Asparaginase
pdb|2JK0|G Chain G, Structural And Functional Insights Into Erwinia Carotovora
L-Asparaginase
pdb|2JK0|H Chain H, Structural And Functional Insights Into Erwinia Carotovora
L-Asparaginase
Length = 325
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 5/122 (4%)
Query: 125 LDSSNMTVDDWINIASDVFD--NYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIIT 182
+ S NMT D + ++ V + + DG VI HGTDTL + L+ ++ K V+
Sbjct: 58 IGSENMTSDVLLTLSKRVNELLARSDVDGVVITHGTDTLDESPYFLNLTVKS-DKPVVFV 116
Query: 183 GSQISIFQPRSDGVDNFIASLILAG--NYVIPEVTVYFHNKLMRGNRTIKTSTYEFDAFI 240
+ +DG N ++ +A N V V ++++ KT+ D F
Sbjct: 117 AAMRPATAISADGPMNLYGAVKVAADKNSRGRGVLVVLNDRIGSARFISKTNASTLDTFK 176
Query: 241 SP 242
+P
Sbjct: 177 AP 178
>pdb|1ZCF|A Chain A, L-Asparaginase From Erwinia Carotovora
pdb|1ZCF|B Chain B, L-Asparaginase From Erwinia Carotovora
pdb|1ZCF|C Chain C, L-Asparaginase From Erwinia Carotovora
pdb|1ZCF|D Chain D, L-Asparaginase From Erwinia Carotovora
pdb|1ZCF|E Chain E, L-Asparaginase From Erwinia Carotovora
pdb|1ZCF|F Chain F, L-Asparaginase From Erwinia Carotovora
pdb|1ZCF|G Chain G, L-Asparaginase From Erwinia Carotovora
pdb|1ZCF|H Chain H, L-Asparaginase From Erwinia Carotovora
pdb|2GVN|A Chain A, L-asparaginase From Erwinia Carotovora In Complex With
Aspartic Acid
pdb|2GVN|B Chain B, L-asparaginase From Erwinia Carotovora In Complex With
Aspartic Acid
pdb|2GVN|C Chain C, L-asparaginase From Erwinia Carotovora In Complex With
Aspartic Acid
pdb|2GVN|D Chain D, L-asparaginase From Erwinia Carotovora In Complex With
Aspartic Acid
pdb|2GVN|E Chain E, L-asparaginase From Erwinia Carotovora In Complex With
Aspartic Acid
pdb|2GVN|F Chain F, L-asparaginase From Erwinia Carotovora In Complex With
Aspartic Acid
pdb|2GVN|G Chain G, L-asparaginase From Erwinia Carotovora In Complex With
Aspartic Acid
pdb|2GVN|H Chain H, L-asparaginase From Erwinia Carotovora In Complex With
Aspartic Acid
pdb|2HLN|A Chain A, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|B Chain B, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|E Chain E, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|F Chain F, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|C Chain C, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|D Chain D, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|G Chain G, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|H Chain H, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|I Chain I, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|J Chain J, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|K Chain K, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|L Chain L, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
Length = 327
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 5/122 (4%)
Query: 125 LDSSNMTVDDWINIASDVFD--NYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIIT 182
+ S NMT D + ++ V + + DG VI HGTDTL + L+ ++ K V+
Sbjct: 60 IGSENMTSDVLLTLSKRVNELLARSDVDGVVITHGTDTLDESPYFLNLTVKS-DKPVVFV 118
Query: 183 GSQISIFQPRSDGVDNFIASLILAG--NYVIPEVTVYFHNKLMRGNRTIKTSTYEFDAFI 240
+ +DG N ++ +A N V V ++++ KT+ D F
Sbjct: 119 AAMRPATAISADGPMNLYGAVKVAADKNSRGRGVLVVLNDRIGSARFISKTNASTLDTFK 178
Query: 241 SP 242
+P
Sbjct: 179 AP 180
>pdb|1BIQ|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Mutant
E238a
Length = 375
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 35/156 (22%)
Query: 88 HDVDYLRNRPDKSEYLALPGLKHNKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFDNYE 147
+VD R+R D Y ALP +H K + L+Y +LLDS N+A +
Sbjct: 51 EEVDVSRDRID---YQALP--EHEKHIFISNLKYQTLLDSIQGRSP---NVALLPLISIP 102
Query: 148 NFDGFVILHGTDTLCYTAAALSFMFENLGKTV----------IITGSQISIFQPRSDGVD 197
+ +V +T ++ S F ++ + + I+T QI Q R++G+
Sbjct: 103 ELETWV-----ETWAFSETIHSRSFTHIIRNIVNDPSVVFDDIVTNEQI---QKRAEGIS 154
Query: 198 NFIASLILAGNYVIPEVTVYFHNKLMRGNRTIKTST 233
++ LI E+T Y+H L G T+ T
Sbjct: 155 SYYDELI--------EMTSYWH-LLGEGTHTVNGKT 181
>pdb|4IMR|A Chain A, Crystal Structure Of 3-oxoacyl (acyl-carrier-protein)
Reductase (target Efi-506442) From Agrobacterium
Tumefaciens C58 With Nadp Bound
pdb|4IMR|B Chain B, Crystal Structure Of 3-oxoacyl (acyl-carrier-protein)
Reductase (target Efi-506442) From Agrobacterium
Tumefaciens C58 With Nadp Bound
Length = 275
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 157 GTDTLCYTAAALSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAGNYVIPEVTV 216
GT+ L + + L +F G+T ++TGS I ++G+ A +IL G V P T
Sbjct: 14 GTENLYFQSMRLETIFGLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHG--VKPGSTA 71
Query: 217 YFHNKLMRGNRTIK 230
+++ T +
Sbjct: 72 AVQQRIIASGGTAQ 85
>pdb|1RSR|A Chain A, Azide Complex Of The Diferrous F208a Mutant R2 Subunit Of
Ribonucleotide Reductase
pdb|1RSR|B Chain B, Azide Complex Of The Diferrous F208a Mutant R2 Subunit Of
Ribonucleotide Reductase
Length = 375
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 35/156 (22%)
Query: 88 HDVDYLRNRPDKSEYLALPGLKHNKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFDNYE 147
+VD R+R D Y ALP +H K + L+Y +LLDS N+A +
Sbjct: 51 EEVDVSRDRID---YQALP--EHEKHIFISNLKYQTLLDSIQGRSP---NVALLPLISIP 102
Query: 148 NFDGFVILHGTDTLCYTAAALSFMFENLGKTV----------IITGSQISIFQPRSDGVD 197
+ +V +T ++ S F ++ + + I+T QI Q R++G+
Sbjct: 103 ELETWV-----ETWAFSETIHSRSFTHIIRNIVNDPSVVFDDIVTNEQI---QKRAEGIS 154
Query: 198 NFIASLILAGNYVIPEVTVYFHNKLMRGNRTIKTST 233
++ LI E+T Y+H L G T+ T
Sbjct: 155 SYYDELI--------EMTSYWH-LLGEGTHTVNGKT 181
>pdb|2AV8|A Chain A, Y122f Mutant Of Ribonucleotide Reductase From Escherichia
Coli
pdb|2AV8|B Chain B, Y122f Mutant Of Ribonucleotide Reductase From Escherichia
Coli
Length = 340
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 35/155 (22%)
Query: 89 DVDYLRNRPDKSEYLALPGLKHNKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFDNYEN 148
+VD R+R D Y ALP +H K + L+Y +LLDS N+A +
Sbjct: 52 EVDVSRDRID---YQALP--EHEKHIFISNLKYQTLLDSIQGRSP---NVALLPLISIPE 103
Query: 149 FDGFVILHGTDTLCYTAAALSFMFENLGKTV----------IITGSQISIFQPRSDGVDN 198
+ +V +T ++ S F ++ + + I+T QI Q R++G+ +
Sbjct: 104 LETWV-----ETWAFSETIHSRSFTHIIRNIVNDPSVVFDDIVTNEQI---QKRAEGISS 155
Query: 199 FIASLILAGNYVIPEVTVYFHNKLMRGNRTIKTST 233
+ LI E+T Y+H L G T+ T
Sbjct: 156 YYDELI--------EMTSYWH-LLGEGTHTVNGKT 181
>pdb|1BIQ|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Mutant
E238a
pdb|1RSV|A Chain A, Azide Complex Of The Diferrous E238a Mutant R2 Subunit Of
Ribonucleotide Reductase
pdb|1RSV|B Chain B, Azide Complex Of The Diferrous E238a Mutant R2 Subunit Of
Ribonucleotide Reductase
Length = 375
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 35/156 (22%)
Query: 88 HDVDYLRNRPDKSEYLALPGLKHNKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFDNYE 147
+VD R+R D Y ALP +H K + L+Y +LLDS N+A +
Sbjct: 51 EEVDVSRDRID---YQALP--EHEKHIFISNLKYQTLLDSIQGRSP---NVALLPLISIP 102
Query: 148 NFDGFVILHGTDTLCYTAAALSFMFENLGKTV----------IITGSQISIFQPRSDGVD 197
+ +V +T ++ S F ++ + + I+T QI Q R++G+
Sbjct: 103 ELETWV-----ETWAFSETIHSRSFTHIIRNIVNDPSVVFDDIVTNEQI---QKRAEGIS 154
Query: 198 NFIASLILAGNYVIPEVTVYFHNKLMRGNRTIKTST 233
++ LI E+T Y+H L G T+ T
Sbjct: 155 SYYDELI--------EMTSYWH-LLGEGTHTVNGKT 181
>pdb|2XOF|A Chain A, Ribonucleotide Reductase Y122no2y Modified R2 Subunit Of
E. Coli
pdb|2XOF|B Chain B, Ribonucleotide Reductase Y122no2y Modified R2 Subunit Of
E. Coli
Length = 375
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 88 HDVDYLRNRPDKSEYLALPGLKHNKRVLYKVLEYDSLLDS 127
+VD R+R D Y ALP +H K + L+Y +LLDS
Sbjct: 51 EEVDVSRDRID---YQALP--EHEKHIFISNLKYQTLLDS 85
>pdb|1YFD|A Chain A, Crystal Structure Of The Y122h Mutant Of Ribonucleotide
Reductase R2 Protein From E. Coli
pdb|1YFD|B Chain B, Crystal Structure Of The Y122h Mutant Of Ribonucleotide
Reductase R2 Protein From E. Coli
Length = 375
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 89 DVDYLRNRPDKSEYLALPGLKHNKRVLYKVLEYDSLLDS 127
+VD R+R D Y ALP +H K + L+Y +LLDS
Sbjct: 52 EVDVSRDRID---YQALP--EHEKHIFISNLKYQTLLDS 85
>pdb|1PIY|A Chain A, Ribonucleotide Reductase R2 Soaked With Ferrous Ion At
Neutral Ph
pdb|1PIY|B Chain B, Ribonucleotide Reductase R2 Soaked With Ferrous Ion At
Neutral Ph
pdb|1R65|A Chain A, Crystal Structure Of Ferrous Soaked Ribonucleotide
Reductase R2 Subunit (Wildtype) At Ph 5 From E. Coli
pdb|1R65|B Chain B, Crystal Structure Of Ferrous Soaked Ribonucleotide
Reductase R2 Subunit (Wildtype) At Ph 5 From E. Coli
Length = 375
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 88 HDVDYLRNRPDKSEYLALPGLKHNKRVLYKVLEYDSLLDS 127
+VD R+R D Y ALP +H K + L+Y +LLDS
Sbjct: 51 EEVDVSRDRID---YQALP--EHEKHIFISNLKYQTLLDS 85
>pdb|1MRR|A Chain A, Substitution Of Manganese For Iron In Ribonucleotide
Reductase From Escherichia Coli. Spectroscopic And
Crystallographic Characterization
pdb|1MRR|B Chain B, Substitution Of Manganese For Iron In Ribonucleotide
Reductase From Escherichia Coli. Spectroscopic And
Crystallographic Characterization
pdb|1RIB|A Chain A, Structure And Function Of The Escherichia Coli
Ribonucleotide Reductase Protein R2
pdb|1RIB|B Chain B, Structure And Function Of The Escherichia Coli
Ribonucleotide Reductase Protein R2
Length = 375
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 88 HDVDYLRNRPDKSEYLALPGLKHNKRVLYKVLEYDSLLDS 127
+VD R+R D Y ALP +H K + L+Y +LLDS
Sbjct: 51 EEVDVSRDRID---YQALP--EHEKHIFISNLKYQTLLDS 85
>pdb|1RNR|A Chain A, Autocatalytic Generation Of Dopa In The Engineered Protein
R2 F208y From Escherichia Coli Ribonucleotide Reductase
And Crystal Structure Of The Dopa-208 Protein
pdb|1RNR|B Chain B, Autocatalytic Generation Of Dopa In The Engineered Protein
R2 F208y From Escherichia Coli Ribonucleotide Reductase
And Crystal Structure Of The Dopa-208 Protein
Length = 375
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 88 HDVDYLRNRPDKSEYLALPGLKHNKRVLYKVLEYDSLLDS 127
+VD R+R D Y ALP +H K + L+Y +LLDS
Sbjct: 51 EEVDVSRDRID---YQALP--EHEKHIFISNLKYQTLLDS 85
>pdb|1XIK|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
pdb|1XIK|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
pdb|1JPR|A Chain A, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Nitric Oxide
pdb|1JPR|B Chain B, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Nitric Oxide
pdb|1JQC|A Chain A, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Hydrogen Peroxide And Hydroxylamine
pdb|1JQC|B Chain B, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Hydrogen Peroxide And Hydroxylamine
pdb|1MXR|A Chain A, High Resolution Structure Of Ribonucleotide Reductase R2
From E. Coli In Its Oxidised (met) Form
pdb|1MXR|B Chain B, High Resolution Structure Of Ribonucleotide Reductase R2
From E. Coli In Its Oxidised (met) Form
pdb|3UUS|E Chain E, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|F Chain F, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|G Chain G, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|H Chain H, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|4ERM|E Chain E, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|F Chain F, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|G Chain G, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|H Chain H, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERP|E Chain E, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|F Chain F, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|G Chain G, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|H Chain H, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
Length = 375
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 88 HDVDYLRNRPDKSEYLALPGLKHNKRVLYKVLEYDSLLDS 127
+VD R+R D Y ALP +H K + L+Y +LLDS
Sbjct: 51 EEVDVSRDRID---YQALP--EHEKHIFISNLKYQTLLDS 85
>pdb|2ALX|A Chain A, Ribonucleotide Reductase R2 From Escherichia Coli In Space
Group P6(1)22
Length = 340
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 35/155 (22%)
Query: 89 DVDYLRNRPDKSEYLALPGLKHNKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFDNYEN 148
+VD R+R D Y ALP +H K + L+Y +LLDS N+A +
Sbjct: 53 EVDVSRDRID---YQALP--EHEKHIFISNLKYQTLLDSIQGRSP---NVALLPLISIPE 104
Query: 149 FDGFVILHGTDTLCYTAAALSFMFENLGKTV----------IITGSQISIFQPRSDGVDN 198
+ +V +T ++ S + ++ + + I+T QI Q R++G+ +
Sbjct: 105 LETWV-----ETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQI---QKRAEGISS 156
Query: 199 FIASLILAGNYVIPEVTVYFHNKLMRGNRTIKTST 233
+ LI E+T Y+H L G T+ T
Sbjct: 157 YYDELI--------EMTSYWH-LLGEGTHTVNGKT 182
>pdb|1PFR|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
pdb|1PFR|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
Length = 340
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 35/155 (22%)
Query: 89 DVDYLRNRPDKSEYLALPGLKHNKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFDNYEN 148
+VD R+R D Y ALP +H K + L+Y +LLDS N+A +
Sbjct: 52 EVDVSRDRID---YQALP--EHEKHIFISNLKYQTLLDSIQGRSP---NVALLPLISIPE 103
Query: 149 FDGFVILHGTDTLCYTAAALSFMFENLGKTV----------IITGSQISIFQPRSDGVDN 198
+ +V +T ++ S + ++ + + I+T QI Q R++G+ +
Sbjct: 104 LETWV-----ETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQI---QKRAEGISS 155
Query: 199 FIASLILAGNYVIPEVTVYFHNKLMRGNRTIKTST 233
+ LI E+T Y+H L G T+ T
Sbjct: 156 YYDELI--------EMTSYWH-LLGEGTHTVNGKT 181
>pdb|1AV8|A Chain A, Ribonucleotide Reductase R2 Subunit From E. Coli
pdb|1AV8|B Chain B, Ribonucleotide Reductase R2 Subunit From E. Coli
Length = 340
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 89 DVDYLRNRPDKSEYLALPGLKHNKRVLYKVLEYDSLLDS 127
+VD R+R D Y ALP +H K + L+Y +LLDS
Sbjct: 52 EVDVSRDRID---YQALP--EHEKHIFISNLKYQTLLDS 85
>pdb|2XZ3|A Chain A, Blv Tm Hairpin
Length = 463
Score = 26.9 bits (58), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 108 LKHNKRV-LYKVLEYDS--LLDSSNMTVDDWINIASDVFDNYENFDGFVILHGTDTLCYT 164
L H + L VLE D L+ + N T + +N+AS V N D I G +LC T
Sbjct: 372 LSHQRLTSLIHVLEQDQQRLITAINQTHYNLLNVASVVAQNRRGLDWLYIRLGFQSLCPT 431
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,110,423
Number of Sequences: 62578
Number of extensions: 334356
Number of successful extensions: 1166
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1142
Number of HSP's gapped (non-prelim): 40
length of query: 255
length of database: 14,973,337
effective HSP length: 97
effective length of query: 158
effective length of database: 8,903,271
effective search space: 1406716818
effective search space used: 1406716818
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)