Query psy12401
Match_columns 255
No_of_seqs 167 out of 1320
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 18:17:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12401.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12401hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09461 ansA cytoplasmic aspa 100.0 2.4E-56 5.2E-61 417.4 21.0 185 46-252 1-185 (335)
2 TIGR00519 asnASE_I L-asparagin 100.0 6.5E-55 1.4E-59 407.9 20.2 180 48-253 1-187 (336)
3 TIGR02153 gatD_arch glutamyl-t 100.0 7E-54 1.5E-58 409.5 20.9 182 46-253 60-250 (404)
4 PRK04183 glutamyl-tRNA(Gln) am 100.0 1.3E-53 2.8E-58 409.2 21.9 181 45-252 72-261 (419)
5 cd00411 Asparaginase Asparagin 100.0 2.8E-53 6E-58 394.9 20.6 179 49-253 1-184 (323)
6 TIGR00520 asnASE_II L-asparagi 100.0 1.2E-52 2.6E-57 394.6 21.2 189 39-252 15-210 (349)
7 smart00870 Asparaginase Aspara 100.0 9.1E-53 2E-57 391.3 19.7 179 51-253 1-184 (323)
8 PRK11096 ansB L-asparaginase I 100.0 3.2E-52 6.9E-57 391.5 20.9 188 39-252 14-205 (347)
9 PF00710 Asparaginase: Asparag 100.0 5.1E-52 1.1E-56 384.6 17.0 176 50-253 1-177 (313)
10 COG0252 AnsB L-asparaginase/ar 100.0 3.4E-50 7.4E-55 378.0 19.0 185 45-252 16-205 (351)
11 KOG0503|consensus 100.0 3.5E-39 7.7E-44 300.2 8.2 206 45-254 20-228 (368)
12 TIGR02717 AcCoA-syn-alpha acet 69.9 26 0.00056 34.4 8.7 52 130-182 353-408 (447)
13 cd00578 L-fuc_L-ara-isomerases 69.5 12 0.00025 36.6 6.2 66 130-203 47-112 (452)
14 PF03641 Lysine_decarbox: Poss 67.7 9.2 0.0002 31.2 4.3 49 148-201 53-104 (133)
15 cd02187 beta_tubulin The tubul 64.9 21 0.00045 34.9 6.9 91 130-222 107-206 (425)
16 PTZ00010 tubulin beta chain; P 62.7 25 0.00054 34.7 7.0 92 130-223 108-208 (445)
17 PLN00220 tubulin beta chain; P 57.2 31 0.00066 34.0 6.5 93 130-223 108-208 (447)
18 cd06267 PBP1_LacI_sugar_bindin 53.6 40 0.00086 28.3 5.9 50 132-188 41-90 (264)
19 PRK02929 L-arabinose isomerase 52.0 34 0.00074 34.4 6.0 69 131-203 56-127 (499)
20 PF01220 DHquinase_II: Dehydro 51.7 31 0.00068 29.2 4.8 44 135-180 53-96 (140)
21 cd02188 gamma_tubulin Gamma-tu 51.1 34 0.00074 33.7 5.7 66 130-195 108-179 (431)
22 cd06278 PBP1_LacI_like_2 Ligan 50.8 93 0.002 26.4 7.9 72 141-217 46-121 (266)
23 PRK03359 putative electron tra 50.4 31 0.00066 31.7 5.0 60 141-207 72-137 (256)
24 TIGR00730 conserved hypothetic 50.2 39 0.00085 29.2 5.4 50 147-201 95-146 (178)
25 PF04122 CW_binding_2: Putativ 49.5 52 0.0011 24.6 5.4 48 134-183 7-57 (92)
26 PRK00865 glutamate racemase; P 49.5 1.2E+02 0.0026 27.4 8.7 52 125-180 42-95 (261)
27 cd06558 crotonase-like Crotona 49.3 1.3E+02 0.0027 25.1 8.3 32 127-158 20-52 (195)
28 COG1448 TyrB Aspartate/tyrosin 49.3 45 0.00098 32.7 6.1 66 113-184 172-243 (396)
29 PRK06072 enoyl-CoA hydratase; 48.7 1.3E+02 0.0029 26.7 8.8 33 127-159 21-54 (248)
30 KOG1432|consensus 47.1 39 0.00083 32.9 5.2 54 164-219 88-143 (379)
31 cd06299 PBP1_LacI_like_13 Liga 47.0 1.5E+02 0.0033 25.2 8.7 50 131-187 40-89 (265)
32 PRK07854 enoyl-CoA hydratase; 45.8 1.5E+02 0.0032 26.4 8.6 32 128-159 22-53 (243)
33 cd06059 Tubulin The tubulin su 45.6 57 0.0012 31.2 6.3 90 131-222 68-166 (382)
34 PRK13015 3-dehydroquinate dehy 45.6 35 0.00076 29.1 4.2 43 136-180 55-97 (146)
35 PRK08252 enoyl-CoA hydratase; 44.6 1.6E+02 0.0035 26.3 8.7 32 128-159 25-57 (254)
36 PRK05395 3-dehydroquinate dehy 44.5 36 0.00079 29.0 4.2 44 135-180 54-97 (146)
37 smart00864 Tubulin Tubulin/Fts 44.1 56 0.0012 28.0 5.4 91 130-224 64-158 (192)
38 cd03557 L-arabinose_isomerase 43.8 63 0.0014 32.5 6.4 53 147-203 65-121 (484)
39 cd01536 PBP1_ABC_sugar_binding 43.6 1E+02 0.0022 25.9 7.0 53 131-188 40-92 (267)
40 cd07035 TPP_PYR_POX_like Pyrim 43.5 1.7E+02 0.0037 23.5 8.3 42 150-193 60-102 (155)
41 TIGR01088 aroQ 3-dehydroquinat 43.5 39 0.00085 28.6 4.2 44 135-180 52-95 (141)
42 cd01541 PBP1_AraR Ligand-bindi 43.3 41 0.00089 29.0 4.5 46 141-187 47-94 (273)
43 PRK06213 enoyl-CoA hydratase; 42.4 1.8E+02 0.0039 25.4 8.6 40 118-159 15-54 (229)
44 PLN00222 tubulin gamma chain; 42.3 54 0.0012 32.5 5.7 93 130-224 110-212 (454)
45 KOG1455|consensus 42.2 25 0.00055 33.5 3.1 29 131-159 227-256 (313)
46 PRK06127 enoyl-CoA hydratase; 42.1 1.8E+02 0.004 26.2 8.8 32 128-159 33-65 (269)
47 cd00466 DHQase_II Dehydroquina 42.0 44 0.00095 28.3 4.3 43 136-180 53-95 (140)
48 PRK07658 enoyl-CoA hydratase; 41.9 1.9E+02 0.0041 25.7 8.7 41 118-159 14-55 (257)
49 cd00455 nuc_hydro nuc_hydro: N 41.7 69 0.0015 29.5 6.0 60 128-189 5-68 (295)
50 PRK05809 3-hydroxybutyryl-CoA 41.6 2E+02 0.0043 25.7 8.8 32 128-159 26-58 (260)
51 PRK07260 enoyl-CoA hydratase; 40.9 2E+02 0.0043 25.6 8.7 33 127-159 23-56 (255)
52 cd02201 FtsZ_type1 FtsZ is a G 40.5 1.5E+02 0.0032 27.5 8.0 88 133-224 69-160 (304)
53 PRK06023 enoyl-CoA hydratase; 40.3 2E+02 0.0043 25.6 8.6 33 127-159 27-60 (251)
54 PRK09674 enoyl-CoA hydratase-i 39.4 2.1E+02 0.0046 25.5 8.7 32 128-159 24-56 (255)
55 TIGR02280 PaaB1 phenylacetate 39.4 2.3E+02 0.0049 25.3 8.8 33 127-159 20-52 (256)
56 PF04392 ABC_sub_bind: ABC tra 38.9 62 0.0013 29.3 5.2 51 131-189 44-94 (294)
57 PLN02600 enoyl-CoA hydratase 38.4 2.3E+02 0.0049 25.3 8.7 31 128-158 17-48 (251)
58 PF00378 ECH: Enoyl-CoA hydrat 38.2 97 0.0021 27.2 6.2 39 120-159 12-52 (245)
59 TIGR03210 badI 2-ketocyclohexa 38.0 2.3E+02 0.005 25.3 8.7 33 127-159 23-56 (256)
60 cd01545 PBP1_SalR Ligand-bindi 37.9 1.7E+02 0.0038 24.8 7.6 57 148-208 56-115 (270)
61 TIGR00177 molyb_syn molybdenum 37.7 1E+02 0.0022 25.2 5.9 47 132-183 50-98 (144)
62 cd05013 SIS_RpiR RpiR-like pro 37.4 64 0.0014 24.7 4.4 43 135-182 3-45 (139)
63 cd06317 PBP1_ABC_sugar_binding 37.2 1.8E+02 0.0039 24.8 7.6 53 130-187 40-92 (275)
64 PRK07657 enoyl-CoA hydratase; 36.3 2.5E+02 0.0054 25.1 8.6 32 128-159 26-58 (260)
65 PRK06688 enoyl-CoA hydratase; 36.2 2.6E+02 0.0057 24.8 8.7 40 120-159 19-59 (259)
66 cd06292 PBP1_LacI_like_10 Liga 36.1 2.8E+02 0.006 23.7 8.6 54 131-187 40-94 (273)
67 PF04101 Glyco_tran_28_C: Glyc 36.0 31 0.00068 28.2 2.5 25 149-182 73-98 (167)
68 TIGR01769 GGGP geranylgeranylg 36.0 1.5E+02 0.0031 26.4 6.9 59 133-195 11-72 (205)
69 PRK05864 enoyl-CoA hydratase; 35.8 2.6E+02 0.0056 25.3 8.7 33 128-160 32-65 (276)
70 PRK09076 enoyl-CoA hydratase; 35.7 2.7E+02 0.0059 24.8 8.8 40 119-159 16-56 (258)
71 PRK08260 enoyl-CoA hydratase; 35.6 2.6E+02 0.0057 25.6 8.8 34 127-160 25-59 (296)
72 cd06277 PBP1_LacI_like_1 Ligan 35.2 1.3E+02 0.0029 25.7 6.5 46 148-199 58-103 (268)
73 PRK08138 enoyl-CoA hydratase; 35.1 2.7E+02 0.006 24.9 8.7 32 128-159 30-62 (261)
74 cd00286 Tubulin_FtsZ Tubulin/F 34.9 1.7E+02 0.0036 27.2 7.5 89 133-223 70-166 (328)
75 cd02649 nuc_hydro_CeIAG nuc_hy 34.8 1.1E+02 0.0023 28.7 6.1 59 129-189 8-70 (306)
76 PRK05980 enoyl-CoA hydratase; 34.7 2.8E+02 0.006 24.8 8.6 32 128-159 25-57 (260)
77 PRK13363 protocatechuate 4,5-d 34.7 1.4E+02 0.0031 28.5 7.0 59 164-222 188-250 (335)
78 PRK05674 gamma-carboxygeranoyl 34.4 2.7E+02 0.0059 25.1 8.6 33 127-159 27-60 (265)
79 PF00091 Tubulin: Tubulin/FtsZ 34.3 67 0.0015 28.0 4.5 88 133-223 105-200 (216)
80 PLN02452 phosphoserine transam 34.3 66 0.0014 30.8 4.7 50 134-184 49-105 (365)
81 cd06281 PBP1_LacI_like_5 Ligan 34.2 48 0.0011 28.6 3.5 36 148-187 55-90 (269)
82 cd06273 PBP1_GntR_like_1 This 34.0 1.7E+02 0.0038 24.9 7.0 51 130-187 39-89 (268)
83 PRK12462 phosphoserine aminotr 34.0 77 0.0017 30.6 5.1 51 133-184 45-103 (364)
84 PRK06144 enoyl-CoA hydratase; 33.8 3E+02 0.0066 24.6 8.8 32 128-159 30-62 (262)
85 COG1024 CaiD Enoyl-CoA hydrata 33.4 2.6E+02 0.0056 24.9 8.2 42 118-159 17-59 (257)
86 cd06283 PBP1_RegR_EndR_KdgR_li 33.3 2.6E+02 0.0057 23.6 8.0 35 148-187 55-89 (267)
87 PRK07327 enoyl-CoA hydratase; 33.0 3.2E+02 0.0069 24.6 8.8 32 128-159 34-66 (268)
88 PRK07110 polyketide biosynthes 32.9 3.2E+02 0.0069 24.3 8.7 33 127-159 26-59 (249)
89 cd01575 PBP1_GntR Ligand-bindi 32.8 1.6E+02 0.0034 25.0 6.5 50 129-185 38-87 (268)
90 PRK06143 enoyl-CoA hydratase; 32.6 3.2E+02 0.007 24.4 8.7 32 128-159 29-61 (256)
91 KOG2882|consensus 32.6 60 0.0013 30.9 4.0 34 147-182 27-60 (306)
92 PTZ00387 epsilon tubulin; Prov 32.0 1.3E+02 0.0029 29.9 6.6 90 130-223 109-208 (465)
93 PRK05981 enoyl-CoA hydratase; 32.0 3.5E+02 0.0076 24.1 8.9 42 118-159 16-59 (266)
94 cd02650 nuc_hydro_CaPnhB NH_hy 31.6 1E+02 0.0022 28.4 5.4 60 129-190 7-70 (304)
95 cd02189 delta_tubulin The tubu 31.5 1.8E+02 0.004 28.6 7.4 92 130-223 104-203 (446)
96 PRK10768 ribonucleoside hydrol 31.4 1.1E+02 0.0024 28.4 5.6 58 129-189 10-71 (304)
97 cd01540 PBP1_arabinose_binding 31.4 2.5E+02 0.0054 24.3 7.6 37 148-187 54-90 (289)
98 TIGR02634 xylF D-xylose ABC tr 31.1 3.9E+02 0.0084 23.9 9.4 55 128-187 36-90 (302)
99 PF01156 IU_nuc_hydro: Inosine 31.0 70 0.0015 29.3 4.2 59 129-188 9-71 (312)
100 COG0303 MoeA Molybdopterin bio 30.6 1E+02 0.0022 30.2 5.4 87 34-160 162-254 (404)
101 PRK05728 DNA polymerase III su 30.3 2.8E+02 0.006 22.9 7.3 64 134-202 14-95 (142)
102 COG0647 NagD Predicted sugar p 30.2 40 0.00087 31.2 2.5 41 147-189 13-54 (269)
103 PRK05870 enoyl-CoA hydratase; 30.0 3.7E+02 0.0081 23.8 8.6 33 127-159 24-57 (249)
104 PRK12342 hypothetical protein; 29.6 63 0.0014 29.7 3.6 55 143-204 71-131 (254)
105 PLN02888 enoyl-CoA hydratase 29.4 3.8E+02 0.0082 24.2 8.6 32 128-159 32-64 (265)
106 TIGR01768 GGGP-family geranylg 29.4 1.4E+02 0.0029 27.1 5.6 44 149-195 28-74 (223)
107 TIGR02764 spore_ybaN_pdaB poly 28.9 1.1E+02 0.0024 25.8 4.8 35 137-172 140-174 (191)
108 PRK03580 carnitinyl-CoA dehydr 28.7 3.4E+02 0.0073 24.3 8.2 40 119-159 16-56 (261)
109 cd06302 PBP1_LsrB_Quorum_Sensi 27.8 2.6E+02 0.0055 24.8 7.2 52 130-187 40-92 (298)
110 PRK08258 enoyl-CoA hydratase; 27.6 4.3E+02 0.0094 23.9 8.7 34 127-160 38-72 (277)
111 cd01538 PBP1_ABC_xylose_bindin 27.4 1.9E+02 0.004 25.5 6.2 52 131-188 40-92 (288)
112 PF09314 DUF1972: Domain of un 27.2 4.2E+02 0.0092 23.1 8.8 57 125-182 66-124 (185)
113 PF07521 RMMBL: RNA-metabolisi 27.0 1E+02 0.0022 20.3 3.4 27 127-158 15-41 (43)
114 PRK14072 6-phosphofructokinase 27.0 1.9E+02 0.0041 28.4 6.6 49 131-182 88-138 (416)
115 PF06180 CbiK: Cobalt chelatas 26.9 82 0.0018 29.0 3.9 70 131-205 120-194 (262)
116 PF03932 CutC: CutC family; I 26.9 1.7E+02 0.0036 26.1 5.6 53 126-181 62-119 (201)
117 COG1105 FruK Fructose-1-phosph 26.9 2.8E+02 0.0061 26.4 7.5 62 125-188 106-171 (310)
118 TIGR03189 dienoyl_CoA_hyt cycl 26.8 2.4E+02 0.0052 25.2 6.8 34 127-160 21-55 (251)
119 PRK11423 methylmalonyl-CoA dec 26.8 4.7E+02 0.01 23.5 8.8 31 127-157 25-55 (261)
120 PRK07511 enoyl-CoA hydratase; 26.7 4.4E+02 0.0096 23.4 8.6 32 128-159 25-57 (260)
121 cd06305 PBP1_methylthioribose_ 26.7 3.6E+02 0.0078 23.0 7.7 75 129-208 38-115 (273)
122 cd06307 PBP1_uncharacterized_s 25.9 2.9E+02 0.0063 23.7 7.1 51 131-187 44-94 (275)
123 PF13407 Peripla_BP_4: Peripla 25.8 1.3E+02 0.0028 25.7 4.8 73 128-206 37-112 (257)
124 PLN03028 pyrophosphate--fructo 25.4 1.6E+02 0.0034 30.7 5.9 47 131-180 158-206 (610)
125 cd00887 MoeA MoeA family. Memb 25.2 1.8E+02 0.0038 28.1 6.0 27 132-158 218-244 (394)
126 PLN02251 pyrophosphate-depende 24.9 2.1E+02 0.0045 29.6 6.6 47 131-180 175-223 (568)
127 PRK09120 p-hydroxycinnamoyl Co 24.8 5E+02 0.011 23.5 8.6 32 128-159 30-62 (275)
128 PRK07103 polyketide beta-ketoa 24.6 3.2E+02 0.007 26.2 7.7 91 114-208 259-360 (410)
129 cd02186 alpha_tubulin The tubu 24.6 1.6E+02 0.0036 28.8 5.7 94 130-224 109-210 (434)
130 cd06275 PBP1_PurR Ligand-bindi 24.6 2.3E+02 0.005 24.1 6.1 51 131-187 40-90 (269)
131 cd06304 PBP1_BmpA_like Peripla 24.4 4.6E+02 0.0099 22.6 8.6 44 140-187 47-91 (260)
132 cd06301 PBP1_rhizopine_binding 24.4 1.5E+02 0.0032 25.4 4.9 52 130-186 40-91 (272)
133 cd06300 PBP1_ABC_sugar_binding 24.2 2.3E+02 0.0051 24.2 6.1 51 131-187 45-96 (272)
134 PF03432 Relaxase: Relaxase/Mo 24.1 1.8E+02 0.0039 25.1 5.4 30 127-157 67-98 (242)
135 cd06296 PBP1_CatR_like Ligand- 24.1 4.5E+02 0.0097 22.3 8.1 35 148-187 55-89 (270)
136 cd01537 PBP1_Repressors_Sugar_ 23.8 4.2E+02 0.0091 21.9 8.9 51 131-187 40-90 (264)
137 PRK01215 competence damage-ind 23.8 2.6E+02 0.0056 25.7 6.5 27 132-158 46-72 (264)
138 PRK05862 enoyl-CoA hydratase; 23.7 5.2E+02 0.011 23.0 8.6 32 128-159 26-58 (257)
139 PRK05368 homoserine O-succinyl 23.7 1.3E+02 0.0029 28.4 4.7 65 115-182 66-141 (302)
140 PF08937 DUF1863: MTH538 TIR-l 23.7 1.1E+02 0.0023 24.5 3.6 43 137-181 59-104 (130)
141 cd06284 PBP1_LacI_like_6 Ligan 23.6 4E+02 0.0086 22.5 7.4 55 148-208 55-112 (267)
142 PRK15118 universal stress glob 23.5 2.3E+02 0.0051 22.1 5.5 9 149-157 104-113 (144)
143 PLN00221 tubulin alpha chain; 23.5 2.1E+02 0.0046 28.3 6.3 61 131-191 111-177 (450)
144 cd05005 SIS_PHI Hexulose-6-pho 23.4 3.4E+02 0.0073 22.6 6.8 76 129-209 17-101 (179)
145 cd02653 nuc_hydro_3 NH_3: A su 23.2 2.3E+02 0.0049 26.6 6.2 59 129-189 7-69 (320)
146 cd01980 Chlide_reductase_Y Chl 23.2 5.1E+02 0.011 25.0 8.8 89 128-218 10-98 (416)
147 PRK09116 3-oxoacyl-(acyl carri 23.0 3.4E+02 0.0074 26.1 7.5 89 113-206 252-352 (405)
148 cd02190 epsilon_tubulin The tu 22.7 3E+02 0.0066 26.5 7.0 90 131-223 78-176 (379)
149 cd06306 PBP1_TorT-like TorT-li 22.7 2.3E+02 0.0051 24.5 5.8 40 142-185 50-90 (268)
150 PRK06048 acetolactate synthase 22.6 2.8E+02 0.0061 27.7 7.0 71 150-222 71-168 (561)
151 COG3613 Nucleoside 2-deoxyribo 22.5 2.3E+02 0.0049 24.9 5.5 53 125-182 44-104 (172)
152 PTZ00335 tubulin alpha chain; 22.5 1.6E+02 0.0035 29.2 5.2 92 131-223 111-210 (448)
153 PRK11572 copper homeostasis pr 22.4 3.3E+02 0.0071 25.1 6.8 79 125-206 62-168 (248)
154 cd02933 OYE_like_FMN Old yello 22.4 1.6E+02 0.0034 27.9 4.9 55 129-186 237-295 (338)
155 PRK07085 diphosphate--fructose 22.3 1.9E+02 0.0041 29.7 5.7 48 131-181 149-198 (555)
156 TIGR01917 gly_red_sel_B glycin 22.2 1.6E+02 0.0035 29.4 5.0 58 132-189 318-377 (431)
157 PF04364 DNA_pol3_chi: DNA pol 22.1 2.1E+02 0.0045 23.5 5.0 66 135-203 15-97 (137)
158 cd00764 Eukaryotic_PFK Phospho 21.9 9.2E+02 0.02 25.9 10.9 60 132-194 464-526 (762)
159 cd01164 FruK_PfkB_like 1-phosp 21.9 3.2E+02 0.0069 24.1 6.7 57 126-184 106-166 (289)
160 cd06274 PBP1_FruR Ligand bindi 21.8 2.2E+02 0.0048 24.3 5.4 49 148-201 55-103 (264)
161 cd06324 PBP1_ABC_sugar_binding 21.8 2.8E+02 0.0061 24.7 6.3 53 131-187 41-93 (305)
162 PRK14690 molybdopterin biosynt 21.7 2.4E+02 0.0051 27.7 6.1 27 36-62 181-207 (419)
163 PRK10116 universal stress prot 21.6 2.5E+02 0.0053 21.8 5.3 12 46-57 1-12 (142)
164 PRK07967 3-oxoacyl-(acyl carri 21.6 7.4E+02 0.016 23.9 9.9 93 112-208 250-351 (406)
165 PRK06882 acetolactate synthase 21.5 2.7E+02 0.0059 27.8 6.7 72 150-223 68-166 (574)
166 TIGR02667 moaB_proteo molybden 21.4 2.5E+02 0.0055 23.6 5.6 27 132-158 45-73 (163)
167 PRK05355 3-phosphoserine/phosp 20.9 3.1E+02 0.0067 25.8 6.6 51 133-184 48-101 (360)
168 cd00394 Clp_protease_like Case 20.7 1.5E+02 0.0033 24.1 4.0 51 130-182 8-63 (161)
169 cd06314 PBP1_tmGBP Periplasmic 20.5 2.7E+02 0.0059 23.9 5.8 36 148-187 55-90 (271)
170 COG4822 CbiK Cobalamin biosynt 20.5 2.3E+02 0.005 26.1 5.3 68 133-206 118-191 (265)
171 TIGR01001 metA homoserine O-su 20.5 2.2E+02 0.0048 27.0 5.4 39 116-155 67-106 (300)
172 TIGR00315 cdhB CO dehydrogenas 20.4 2E+02 0.0042 24.8 4.7 65 149-214 27-95 (162)
173 cd06282 PBP1_GntR_like_2 Ligan 20.4 4.2E+02 0.009 22.3 6.8 50 131-186 40-89 (266)
174 cd07019 S49_SppA_1 Signal pept 20.4 2.4E+02 0.0053 24.5 5.4 48 135-183 23-77 (211)
175 PRK10680 molybdopterin biosynt 20.1 2.5E+02 0.0055 27.4 6.0 28 132-159 227-254 (411)
176 cd06313 PBP1_ABC_sugar_binding 20.0 2.5E+02 0.0054 24.4 5.5 52 131-187 40-91 (272)
No 1
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=100.00 E-value=2.4e-56 Score=417.44 Aligned_cols=185 Identities=50% Similarity=0.819 Sum_probs=164.1
Q ss_pred CCCCcEEEEecCCcceeeeCCCCceecCcchHHHHHhcCCCCCccccccCCCCccccccccccccCceeEEEEEEecCCC
Q psy12401 46 SLESRVLVIYTGGTIGMIINNDGVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYLALPGLKHNKRVLYKVLEYDSLL 125 (255)
Q Consensus 46 ~~~~rIlVI~TGGTIa~~~~~~g~l~p~~~~~~~~L~~~p~l~~~~~~~~~~~~~~~~~lp~l~~~~~v~~~v~e~~~~~ 125 (255)
|.+|||+||+|||||+|+.++ .++.|....+++++..+|.+...+ ...++++++.+++
T Consensus 1 ~~~~~i~vl~TGGTIa~~~~~-~g~~~~~~~~~~~l~~~p~l~~~~---------------------~~~~~~~~~~~~i 58 (335)
T PRK09461 1 MQKKSIYVAYTGGTIGMQRSD-QGYIPVSGHLQRQLALMPEFHRPE---------------------MPDFTIHEYTPLI 58 (335)
T ss_pred CCCCEEEEEeCCccccCCcCC-CCccCCCccHHHHHHhCccccccC---------------------cccEEEEEccCCC
Confidence 346899999999999997654 457776555688888887654210 1136777888779
Q ss_pred CCCCCCHHHHHHHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCCCCCCCChHHHHHHHHHHH
Q psy12401 126 DSSNMTVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLIL 205 (255)
Q Consensus 126 dSs~~t~~d~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av~~ 205 (255)
||++|||+||.+|++.|++.+++||||||||||||||||||||+|++.+++|||||||||||++++++||+.||.+|+++
T Consensus 59 dSs~mt~~~w~~la~~I~~~~~~~dG~VVtHGTDTmeeTA~~L~~~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av~~ 138 (335)
T PRK09461 59 DSSDMTPEDWQHIADDIKANYDDYDGFVILHGTDTMAYTASALSFMLENLGKPVIVTGSQIPLAELRSDGQTNLLNALYV 138 (335)
T ss_pred CcccCCHHHHHHHHHHHHHHhccCCeEEEeeccchHHHHHHHHHHHHhCCCCCEEEeCCCCCCCCCCchHHHHHHHHHHH
Confidence 99999999999999999999988999999999999999999999999888999999999999999999999999999999
Q ss_pred HhCCCCCcEEEEeCCeEeccCCeEEccCCCCccCCCCCCCCcEEEec
Q psy12401 206 AGNYVIPEVTVYFHNKLMRGNRTIKTSTYEFDAFISPNCLPLVQVGI 252 (255)
Q Consensus 206 A~~~~~~GV~V~f~g~l~~a~~v~K~~t~~~~aF~Sp~~gpLg~v~~ 252 (255)
|++...+||+|||||++|+|++++|.|+.+++||.||++||||.++.
T Consensus 139 A~~~~~~GV~V~f~~~i~~a~~v~K~~t~~~daF~s~~~g~lg~~~~ 185 (335)
T PRK09461 139 AANYPINEVTLFFNNKLFRGNRTTKAHADGFDAFASPNLPPLLEAGI 185 (335)
T ss_pred HcCCCCCeEEEEECCEeeccCceEEcCCCCCccccCCCCCcceEccc
Confidence 99866679999999999999999999999999999999999998764
No 2
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=100.00 E-value=6.5e-55 Score=407.92 Aligned_cols=180 Identities=37% Similarity=0.530 Sum_probs=158.2
Q ss_pred CCcEEEEecCCcceeeeCC-CCceecCcchHHHHHhcCCCCCccccccCCCCccccccccccccCceeEEEEEEecCCCC
Q psy12401 48 ESRVLVIYTGGTIGMIINN-DGVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYLALPGLKHNKRVLYKVLEYDSLLD 126 (255)
Q Consensus 48 ~~rIlVI~TGGTIa~~~~~-~g~l~p~~~~~~~~L~~~p~l~~~~~~~~~~~~~~~~~lp~l~~~~~v~~~v~e~~~~~d 126 (255)
||||+||+|||||+|+.++ .+++.|. ...+++|..+|.+.+.. .+++.++. .+|
T Consensus 1 m~~I~vi~TGGTIa~~~~~~~~gl~p~-~~~~~ll~~~p~l~~~~-----------------------~~~~~~~~-~id 55 (336)
T TIGR00519 1 LKDISIISTGGTIASKVDYRTGAVHPV-FTADELLSAVPELLDIA-----------------------NIDGEALM-NIL 55 (336)
T ss_pred CCEEEEEECCCcccccccCCCCcccCC-CCHHHHHHhCccccccc-----------------------cceEEEec-CCC
Confidence 6899999999999997543 3678885 45788888888765310 01222333 499
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCCCCCCCChHHHHHHHHHHHH
Q psy12401 127 SSNMTVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILA 206 (255)
Q Consensus 127 Ss~~t~~d~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av~~A 206 (255)
|++|||+||.+|++.|++++++||||||||||||||||||||+|++.+ +|||||||||||++++++||+.||.+|+.+|
T Consensus 56 Ss~~tp~~w~~la~~I~~~~~~~dG~VVtHGTDTme~TA~~Ls~~l~~-~kPVVlTGsmrp~~~~~sDg~~NL~~Al~~A 134 (336)
T TIGR00519 56 SENMKPEYWVEIAEAVKKEYDDYDGFVITHGTDTMAYTAAALSFMLET-PKPVVFTGAQRSSDRPSSDAALNLLCAVRAA 134 (336)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCeEEEccCCchHHHHHHHHHHHcCC-CCCEEEECCCCCCCCcCcchHHHHHHHHHHH
Confidence 999999999999999999998899999999999999999999999866 9999999999999999999999999999999
Q ss_pred hCCC------CCcEEEEeCCeEeccCCeEEccCCCCccCCCCCCCCcEEEecc
Q psy12401 207 GNYV------IPEVTVYFHNKLMRGNRTIKTSTYEFDAFISPNCLPLVQVGIE 253 (255)
Q Consensus 207 ~~~~------~~GV~V~f~g~l~~a~~v~K~~t~~~~aF~Sp~~gpLg~v~~~ 253 (255)
+++. .+||+||||++|++|+|++|.|+.++|||.|||+||||++..+
T Consensus 135 ~~~~~~~~i~~~gV~v~f~~~i~~a~~v~K~~t~~~daF~S~~~~~lg~v~~~ 187 (336)
T TIGR00519 135 TEYIAEVTVCMHGVTLDFNCRLHRGVKVRKAHTSRRDAFASINAPPLAEINPD 187 (336)
T ss_pred cCccccccccCceeEEEccCeEeecCceEEcCCCCCcccCCCCCCeeEEEECC
Confidence 9876 5699999999999999999999999999999999999999763
No 3
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=100.00 E-value=7e-54 Score=409.51 Aligned_cols=182 Identities=37% Similarity=0.490 Sum_probs=162.0
Q ss_pred CCCCcEEEEecCCcceeeeC-CCCceecCcchHHHHHhcCCCCCccccccCCCCccccccccccccCceeEEEEEEecCC
Q psy12401 46 SLESRVLVIYTGGTIGMIIN-NDGVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYLALPGLKHNKRVLYKVLEYDSL 124 (255)
Q Consensus 46 ~~~~rIlVI~TGGTIa~~~~-~~g~l~p~~~~~~~~L~~~p~l~~~~~~~~~~~~~~~~~lp~l~~~~~v~~~v~e~~~~ 124 (255)
..+|||+||+|||||+|+.+ ..|.+.|.. ..+++++.+|++.+ + ..+++.++.+
T Consensus 60 ~~~p~I~ii~TGGTIa~~~~~~~g~~~p~~-~~~~ll~~vp~l~~------------------~-----a~i~~~~~~n- 114 (404)
T TIGR02153 60 PGLPKVSIISTGGTIASRVDYETGAVYPAF-TAEELARAVPELLE------------------I-----ANIKARAVFN- 114 (404)
T ss_pred CCCCEEEEEeCCchhcccccccCCcccCCC-CHHHHHHhChhhcc------------------c-----ceEEEEecCC-
Confidence 56899999999999999854 445677743 36888898886652 1 1256677777
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhcC-CCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCCCCCCCChHHHHHHHHH
Q psy12401 125 LDSSNMTVDDWINIASDVFDNYEN-FDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASL 203 (255)
Q Consensus 125 ~dSs~~t~~d~~~La~~I~~~~~~-~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av 203 (255)
+||+||||+||.+|++.|++.+++ |||||||||||||||||+||+|++.+++|||||||||||++++++||+.||.+|+
T Consensus 115 idS~~mtp~~w~~La~~I~~~~~~~~dGvVVtHGTDTM~yTA~aLs~~l~~~~kPVVlTGAqrp~~~~~sDa~~NL~~Av 194 (404)
T TIGR02153 115 ILSENMKPEYWIKIAEAVAKALKEGADGVVVAHGTDTMAYTAAALSFMFETLPVPVVLVGAQRSSDRPSSDAALNLICAV 194 (404)
T ss_pred CCchhCCHHHHHHHHHHHHHHhhcCCCcEEEecCChhHHHHHHHHHHHhhCCCCCEEEECCCCCCCCCCchHHHHHHHHH
Confidence 899999999999999999999977 9999999999999999999999998889999999999999999999999999999
Q ss_pred HHHhCCCCCcEEEEeCCe-------EeccCCeEEccCCCCccCCCCCCCCcEEEecc
Q psy12401 204 ILAGNYVIPEVTVYFHNK-------LMRGNRTIKTSTYEFDAFISPNCLPLVQVGIE 253 (255)
Q Consensus 204 ~~A~~~~~~GV~V~f~g~-------l~~a~~v~K~~t~~~~aF~Sp~~gpLg~v~~~ 253 (255)
.+|+++ ..||+|||||+ +|+|+|++|.|+.++|||+|||++|||++..+
T Consensus 195 ~~A~~~-~~gV~V~f~g~~~d~~~~i~~g~rv~K~~t~~~dAF~S~n~~plg~v~~~ 250 (404)
T TIGR02153 195 RAATSP-IAEVTVVMHGETSDTYCLVHRGVKVRKMHTSRRDAFQSINDIPIAKIDPD 250 (404)
T ss_pred HHHhCC-CCcEEEEECCccCCcceEEEEcCceEECCCCCCCcccCCCCCceEEEeCC
Confidence 999884 56999999996 99999999999999999999999999999764
No 4
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=100.00 E-value=1.3e-53 Score=409.22 Aligned_cols=181 Identities=36% Similarity=0.501 Sum_probs=161.0
Q ss_pred cCCCCcEEEEecCCcceeeeC-CCCceecCcchHHHHHhcCCCCCccccccCCCCccccccccccccCceeEEEEEEecC
Q psy12401 45 ESLESRVLVIYTGGTIGMIIN-NDGVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYLALPGLKHNKRVLYKVLEYDS 123 (255)
Q Consensus 45 ~~~~~rIlVI~TGGTIa~~~~-~~g~l~p~~~~~~~~L~~~p~l~~~~~~~~~~~~~~~~~lp~l~~~~~v~~~v~e~~~ 123 (255)
...+|||+||+|||||+|+.+ ..|.+.|.. ..+++|+.+|++.+ . ..+++.++.+
T Consensus 72 ~~~~~~I~ii~TGGTIa~~~~~~~G~~~p~~-~~~~ll~~vp~l~~------------------~-----a~i~~~~~~~ 127 (419)
T PRK04183 72 DPGLPNVSILSTGGTIASKVDYRTGAVTPAF-TAEDLLRAVPELLD------------------I-----ANIRGRVLFN 127 (419)
T ss_pred CCCCCEEEEEeCCchhccccccCCCcccCCC-CHHHHHHhChhhcc------------------c-----ceEEEEEecc
Confidence 456899999999999999854 456677743 36888888886652 1 1256677776
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhcC-CCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCCCCCCCChHHHHHHHH
Q psy12401 124 LLDSSNMTVDDWINIASDVFDNYEN-FDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQISIFQPRSDGVDNFIAS 202 (255)
Q Consensus 124 ~~dSs~~t~~d~~~La~~I~~~~~~-~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~A 202 (255)
+||+||||+||.+|++.|++++++ |||||||||||||||||+||+|++ +++|||||||||||++++++||+.||.+|
T Consensus 128 -idS~~mtp~~W~~La~~I~~~~~~~~dGvVVtHGTDTM~yTA~aLs~~l-~~~kPVVlTGAqrp~~~~~sDa~~NL~~A 205 (419)
T PRK04183 128 -ILSENMTPEYWVEIAEAVYEEIKNGADGVVVAHGTDTMHYTAAALSFML-KTPVPIVFVGAQRSSDRPSSDAAMNLICA 205 (419)
T ss_pred -CCchhCCHHHHHHHHHHHHHHhhccCCeEEEecCCchHHHHHHHHHHhc-CCCCCEEEeCCCCCCCCCCchHHHHHHHH
Confidence 899999999999999999999986 999999999999999999999998 99999999999999999999999999999
Q ss_pred HHHHhCCCCCcEEEEeCCe-------EeccCCeEEccCCCCccCCCCCCCCcEEEec
Q psy12401 203 LILAGNYVIPEVTVYFHNK-------LMRGNRTIKTSTYEFDAFISPNCLPLVQVGI 252 (255)
Q Consensus 203 v~~A~~~~~~GV~V~f~g~-------l~~a~~v~K~~t~~~~aF~Sp~~gpLg~v~~ 252 (255)
+.+|+++ .+||+|||||+ +|+|+|++|.|+.++|||+|||++|||++..
T Consensus 206 v~~A~~~-~~gV~Vvf~g~~~d~~~~i~~g~rv~K~~t~~~dAF~S~n~~plg~v~~ 261 (419)
T PRK04183 206 VLAATSD-IAEVVVVMHGTTSDDYCALHRGTRVRKMHTSRRDAFQSINDKPLAKVDY 261 (419)
T ss_pred HHHHhCC-CCcEEEEECCccccccceEEecCcEEECCCCCcccccCCCCCceEEEec
Confidence 9999975 46999999996 9999999999999999999999999999976
No 5
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=100.00 E-value=2.8e-53 Score=394.85 Aligned_cols=179 Identities=37% Similarity=0.551 Sum_probs=155.4
Q ss_pred CcEEEEecCCcceeeeCC---CCceecCcchHHHHHhcCCCCCccccccCCCCccccccccccccCceeEEEEEEecCCC
Q psy12401 49 SRVLVIYTGGTIGMIINN---DGVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYLALPGLKHNKRVLYKVLEYDSLL 125 (255)
Q Consensus 49 ~rIlVI~TGGTIa~~~~~---~g~l~p~~~~~~~~L~~~p~l~~~~~~~~~~~~~~~~~lp~l~~~~~v~~~v~e~~~~~ 125 (255)
|||+||+|||||+|+.++ .++..| ....+++|..+|++.+. ..+++.++. .+
T Consensus 1 ~~I~vi~TGGTIa~~~~~~~~~~~~~~-~~~~~~ll~~~p~l~~~-----------------------~~~~~~~~~-~i 55 (323)
T cd00411 1 KNILILYTGGTIAMVGGSSASSGYGAG-SLPADALLAAVPEIKNI-----------------------ANIKGEQLP-NI 55 (323)
T ss_pred CEEEEEECCchhhcccCCCccCCccCC-CCCHHHHHHhCcccccc-----------------------cEEEEEEec-CC
Confidence 689999999999997542 333334 44567888877755421 123344444 49
Q ss_pred CCCCCCHHHHHHHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCCCCCCCChHHHHHHHHHHH
Q psy12401 126 DSSNMTVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLIL 205 (255)
Q Consensus 126 dSs~~t~~d~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av~~ 205 (255)
||++|||+||.+|++.|++++++||||||||||||||||||||+|++.+ +|||||||||||++++++||+.||.+|+.+
T Consensus 56 dSs~~t~~~w~~l~~~I~~~~~~~dGiVVtHGTDTmeeTA~~L~~~l~~-~kPVVlTGA~rp~~~~~sDg~~NL~~Al~~ 134 (323)
T cd00411 56 DSSDMTDEDWLKIAKDINELYDSYDGFVITHGTDTMEETAYFLSLTLEN-DKPVVLTGSMRPSTELSADGPLNLYNAVYV 134 (323)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCcEEEEcCcccHHHHHHHHHHHhcC-CCCEEEECCCCCCCCcCcchHHHHHHHHHH
Confidence 9999999999999999999998899999999999999999999998866 999999999999999999999999999999
Q ss_pred HhCCC--CCcEEEEeCCeEeccCCeEEccCCCCccCCCCCCCCcEEEecc
Q psy12401 206 AGNYV--IPEVTVYFHNKLMRGNRTIKTSTYEFDAFISPNCLPLVQVGIE 253 (255)
Q Consensus 206 A~~~~--~~GV~V~f~g~l~~a~~v~K~~t~~~~aF~Sp~~gpLg~v~~~ 253 (255)
|+++. .+||+|||||++|+|++++|.|+.+++||.||++||||++..+
T Consensus 135 A~~~~~~~~gV~V~f~~~i~~a~~v~K~~t~~~daF~s~~~~~lg~~~~~ 184 (323)
T cd00411 135 AANYDSRGRGVLVVFNDRIFRGRRVTKTHALSLDAFVSPNYGPLGYIVED 184 (323)
T ss_pred HcCcccCCCeEEEEECCEEeccCceEEccCCCCCCCCCCCCCeeEEEECC
Confidence 99875 5799999999999999999999999999999999999999765
No 6
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=100.00 E-value=1.2e-52 Score=394.63 Aligned_cols=189 Identities=24% Similarity=0.232 Sum_probs=164.1
Q ss_pred ccccCccCCCCcEEEEecCCcceeeeCC---CCceecCcchHHHHHhcCCCCCccccccCCCCccccccccccccCceeE
Q psy12401 39 RFKNQTESLESRVLVIYTGGTIGMIINN---DGVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYLALPGLKHNKRVL 115 (255)
Q Consensus 39 ~~~~~~~~~~~rIlVI~TGGTIa~~~~~---~g~l~p~~~~~~~~L~~~p~l~~~~~~~~~~~~~~~~~lp~l~~~~~v~ 115 (255)
.-+..++..||||+||+|||||+|+.++ .+++.|.....+++|+.+|.+.+ ...
T Consensus 15 ~~~~~~~~~~~~Ilii~TGGTIa~~~~~~~~~~g~~~g~~~~~~ll~~vp~l~~-----------------------~~~ 71 (349)
T TIGR00520 15 SGSAAQARSLPNIKILATGGTIAGKGQSSASTAGYKVGELGIEDLIEAVPSLKD-----------------------IAN 71 (349)
T ss_pred cchhhhhcCCCEEEEEECCCcceeccCccccccCcccCCCCHHHHHHhCccccc-----------------------cce
Confidence 3345566778999999999999997542 14566643446888888876542 113
Q ss_pred EEEEEecCCCCCCCCCHHHHHHHHHHHHHhhc--CCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCCCCCCCC
Q psy12401 116 YKVLEYDSLLDSSNMTVDDWINIASDVFDNYE--NFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQISIFQPRS 193 (255)
Q Consensus 116 ~~v~e~~~~~dSs~~t~~d~~~La~~I~~~~~--~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP~~~~~s 193 (255)
+++.++.+ +||++|+|+||.+|++.|++.++ +||||||||||||||||||||+|++. .+|||||||||||++++++
T Consensus 72 i~~~~~~~-idS~~mt~~dw~~la~~I~~~~~~~~~~GiVVtHGTDTme~tA~~Lsl~l~-~~kPVVlTGAmrP~~~~~s 149 (349)
T TIGR00520 72 IKGEQIVN-VGSQDMNEEVLLKLAKGINELLASDDYDGIVITHGTDTLEETAYFLDLTVK-SDKPVVIVGAMRPSTSVSA 149 (349)
T ss_pred EEEEEccC-CCcccCCHHHHHHHHHHHHHHhccCCCCEEEEeCCcccHHHHHHHHHHHcC-CCCCEEEECCCCCCCCcCc
Confidence 56777877 89999999999999999999986 49999999999999999999999884 6999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCC--CCcEEEEeCCeEeccCCeEEccCCCCccCCCCCCCCcEEEec
Q psy12401 194 DGVDNFIASLILAGNYV--IPEVTVYFHNKLMRGNRTIKTSTYEFDAFISPNCLPLVQVGI 252 (255)
Q Consensus 194 Dg~~NL~~Av~~A~~~~--~~GV~V~f~g~l~~a~~v~K~~t~~~~aF~Sp~~gpLg~v~~ 252 (255)
||+.||.+|+.+|+++. .+||+|||||+||+|++++|.|+.+++||.||++||||+|+.
T Consensus 150 Dg~~NL~~Av~~A~~~~~~~~gV~v~f~~~i~~a~~v~K~~t~~~daF~S~~~g~LG~v~~ 210 (349)
T TIGR00520 150 DGPMNLYNAVSVAANPKSAGRGVLVVLNDRIASGRYVTKTNTTSLDTFKSRNQGYLGYIHN 210 (349)
T ss_pred chHHHHHHHHHHHcCcccCCCcEEEEECCEEeecCceEecCCCCCCcccCCCCCceEEEEC
Confidence 99999999999999875 469999999999999999999999999999999999999976
No 7
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=100.00 E-value=9.1e-53 Score=391.26 Aligned_cols=179 Identities=35% Similarity=0.491 Sum_probs=149.7
Q ss_pred EEEEecCCcceeeeCCCC-ceecCcchHHHHHhcCCCCCccccccCCCCccccccccccccCceeEEEEEEecCCCCCCC
Q psy12401 51 VLVIYTGGTIGMIINNDG-VLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYLALPGLKHNKRVLYKVLEYDSLLDSSN 129 (255)
Q Consensus 51 IlVI~TGGTIa~~~~~~g-~l~p~~~~~~~~L~~~p~l~~~~~~~~~~~~~~~~~lp~l~~~~~v~~~v~e~~~~~dSs~ 129 (255)
|+||+|||||+|+.++.+ .+.|. ....++++.+|.+. ++.. .+++.++.+ +||+|
T Consensus 1 I~vi~TGGTIa~~~~~~~~~~~~~-~~~~~~~~~~~~~~------------------~~~~----~~~~~~~~~-idSs~ 56 (323)
T smart00870 1 ILVLYTGGTIAMKADPSTGAVGPT-AGAEELLALLPALP------------------ELAD----DIEVEQVFN-IDSSN 56 (323)
T ss_pred CEEEEcCChhcceeCCCCCccCCC-CchhhHHHhhhhhh------------------cccC----ceEEEEecC-CCccc
Confidence 689999999999865443 33443 23345555444321 1110 133444444 99999
Q ss_pred CCHHHHHHHHHHHHHhh--cCCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCCCCCCCChHHHHHHHHHHHHh
Q psy12401 130 MTVDDWINIASDVFDNY--ENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAG 207 (255)
Q Consensus 130 ~t~~d~~~La~~I~~~~--~~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av~~A~ 207 (255)
|||+||.+|++.|++.+ ++||||||||||||||||||||+|++.+++|||||||||||++++++||+.||.+|+.+|+
T Consensus 57 ~t~~~w~~la~~i~~~~~~~~~dG~VVtHGTDTmeeTA~~Ls~~l~~l~kPVVlTGa~rp~~~~~sDg~~NL~~Av~~A~ 136 (323)
T smart00870 57 MTPADWLKLAKRINEALADDGYDGVVVTHGTDTLEETAYFLSLTLDSLDKPVVLTGAMRPATALSSDGPANLLDAVRVAA 136 (323)
T ss_pred CCHHHHHHHHHHHHHHhccCCCCEEEEecCCccHHHHHHHHHHHhhcCCCCEEEECCCCCCCCCCchhHHHHHHHHHHHc
Confidence 99999999999999865 4699999999999999999999999987799999999999999999999999999999999
Q ss_pred CCC--CCcEEEEeCCeEeccCCeEEccCCCCccCCCCCCCCcEEEecc
Q psy12401 208 NYV--IPEVTVYFHNKLMRGNRTIKTSTYEFDAFISPNCLPLVQVGIE 253 (255)
Q Consensus 208 ~~~--~~GV~V~f~g~l~~a~~v~K~~t~~~~aF~Sp~~gpLg~v~~~ 253 (255)
++. .+||+|||||+||+|++++|.|+.+++||.||++||||++..+
T Consensus 137 ~~~a~~~GV~V~f~~~i~~a~~v~K~~t~~~daF~s~~~~~lg~~~~~ 184 (323)
T smart00870 137 SPEARGRGVLVVFNDEIHRARRVTKTHTSRVDAFQSPNFGPLGEVDEG 184 (323)
T ss_pred CcccCCCEEEEEECCEeeeeCceEEcCCCCcccccCCCCCeeEEEECC
Confidence 876 5799999999999999999999999999999999999999754
No 8
>PRK11096 ansB L-asparaginase II; Provisional
Probab=100.00 E-value=3.2e-52 Score=391.50 Aligned_cols=188 Identities=24% Similarity=0.314 Sum_probs=162.0
Q ss_pred ccccCccCCCCcEEEEecCCcceeeeCC--CCceecCcchHHHHHhcCCCCCccccccCCCCccccccccccccCceeEE
Q psy12401 39 RFKNQTESLESRVLVIYTGGTIGMIINN--DGVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYLALPGLKHNKRVLY 116 (255)
Q Consensus 39 ~~~~~~~~~~~rIlVI~TGGTIa~~~~~--~g~l~p~~~~~~~~L~~~p~l~~~~~~~~~~~~~~~~~lp~l~~~~~v~~ 116 (255)
-|+-.+ ..||||+||+|||||+|+... +.++.+.....+++|..+|.+.+ ...+
T Consensus 14 ~~~~~~-~~~~~I~vi~TGGTIa~~~~~~~~~~~~~g~~~~~~ll~~vp~l~~-----------------------~~~i 69 (347)
T PRK11096 14 GFSGAA-FALPNITILATGGTIAGGGDSATKSNYTAGKVGVENLVNAVPQLKD-----------------------IANV 69 (347)
T ss_pred HHHhhh-ccCCcEEEEeCCCccccccCCccccccccCCCCHHHHHHhCccccc-----------------------cceE
Confidence 455555 668999999999999996322 23344433345788888776542 1135
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCCCCCCCChHH
Q psy12401 117 KVLEYDSLLDSSNMTVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQISIFQPRSDGV 196 (255)
Q Consensus 117 ~v~e~~~~~dSs~~t~~d~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP~~~~~sDg~ 196 (255)
++.++.+ +||++|||+||.+|++.|++.+++|||||||||||||||||+||+|+ .+++|||||||||||++++++||+
T Consensus 70 ~~~~~~~-~dS~~~t~~~~~~l~~~i~~~~~~~dGiVVtHGTDTme~tA~~Ls~~-~~~~kPVVlTGAmrP~~~~~sDg~ 147 (347)
T PRK11096 70 KGEQVVN-IGSQDMNDEVWLTLAKKINTDCDKTDGFVITHGTDTMEETAYFLDLT-VKCDKPVVLVGAMRPSTAMSADGP 147 (347)
T ss_pred EEEEccc-CCcccCCHHHHHHHHHHHHHhcCCCCEEEEeCCCchHHHHHHHHHHh-ccCCCCEEEeCCCCCCCCcCCchH
Confidence 6777777 99999999999999999999878899999999999999999999996 489999999999999999999999
Q ss_pred HHHHHHHHHHhCCC--CCcEEEEeCCeEeccCCeEEccCCCCccCCCCCCCCcEEEec
Q psy12401 197 DNFIASLILAGNYV--IPEVTVYFHNKLMRGNRTIKTSTYEFDAFISPNCLPLVQVGI 252 (255)
Q Consensus 197 ~NL~~Av~~A~~~~--~~GV~V~f~g~l~~a~~v~K~~t~~~~aF~Sp~~gpLg~v~~ 252 (255)
.||.+|+.+|+++. .+||+|||+|++++|++++|.|+.+++||+||++||||++..
T Consensus 148 ~NL~~Ai~~A~~~~~~~~gV~v~f~~~i~~a~~v~K~~t~~~daF~s~~~g~lg~v~~ 205 (347)
T PRK11096 148 LNLYNAVVTAADKASANRGVLVAMNDTVLDGRDVTKTNTTDVQTFQSPNYGPLGYIHN 205 (347)
T ss_pred HHHHHHHHHHcCcccCCCeEEEEECCEEEecCceEECCCCCccccCCCCCCceEEEEC
Confidence 99999999999875 479999999999999999999999999999999999999974
No 9
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=100.00 E-value=5.1e-52 Score=384.59 Aligned_cols=176 Identities=38% Similarity=0.600 Sum_probs=144.6
Q ss_pred cEEEEecCCcceeeeCCCC-ceecCcchHHHHHhcCCCCCccccccCCCCccccccccccccCceeEEEEEEecCCCCCC
Q psy12401 50 RVLVIYTGGTIGMIINNDG-VLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYLALPGLKHNKRVLYKVLEYDSLLDSS 128 (255)
Q Consensus 50 rIlVI~TGGTIa~~~~~~g-~l~p~~~~~~~~L~~~p~l~~~~~~~~~~~~~~~~~lp~l~~~~~v~~~v~e~~~~~dSs 128 (255)
||+||+|||||+|+..+.+ .+.| ..+++++.+| +.+ .+ .+++.++.. +||+
T Consensus 1 kI~vi~TGGTI~~~~~~~~~~~~~---~~~~~l~~~~-l~~---------------~~--------~~~~~~~~~-~dS~ 52 (313)
T PF00710_consen 1 KILVIYTGGTIAMVYSPGGGGLAP---TGEELLEALP-LSN---------------IA--------DIEVEQFMN-IDSS 52 (313)
T ss_dssp EEEEEEEESGGGEEESTTTTSCEB---HHHHHHHHSG-GGG---------------TS--------EEEEEEEEE-E-GG
T ss_pred CEEEEEeCchhhceEcCCCCeecc---CHHHHHHhCc-ccc---------------CC--------eEEEccccc-cCch
Confidence 7999999999999865443 5777 4688888876 442 11 234444444 8999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCCCCCCCChHHHHHHHHHHHHhC
Q psy12401 129 NMTVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAGN 208 (255)
Q Consensus 129 ~~t~~d~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av~~A~~ 208 (255)
+||++||.+|++.|++.+++||||||||||||||||||||++++.+++|||||||||||++++++||+.||.+|+.+|++
T Consensus 53 ~~t~~~~~~la~~i~~~~~~~~GvVVtHGTDTme~tA~~Ls~~l~~l~kPVVlTGa~~P~~~~~sDg~~NL~~Av~~A~~ 132 (313)
T PF00710_consen 53 DMTPEDWLELARAIQAALDDYDGVVVTHGTDTMEETAFFLSLLLDNLDKPVVLTGAMRPLSAPGSDGPRNLYDAVRVAAS 132 (313)
T ss_dssp G--HHHHHHHHHHHHHHHTTCSEEEEE--STTHHHHHHHHHHHEES-SSEEEEE--SS-TTSTT-SHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHHHHhcCeEEEecCchHHHHHHHHHHHHhcCCCCCEEEeCCcCCCcCCCCccHHHHHHHHHHHhc
Confidence 99999999999999999977999999999999999999999999888999999999999999999999999999999999
Q ss_pred CCCCcEEEEeCCeEeccCCeEEccCCCCccCCCCCCCCcEEEecc
Q psy12401 209 YVIPEVTVYFHNKLMRGNRTIKTSTYEFDAFISPNCLPLVQVGIE 253 (255)
Q Consensus 209 ~~~~GV~V~f~g~l~~a~~v~K~~t~~~~aF~Sp~~gpLg~v~~~ 253 (255)
+..+||+|||||+||+|++++|.|+.+++||.||++||||+++.+
T Consensus 133 ~~~~GV~v~f~~~i~~a~~v~K~~t~~~daF~s~~~g~lg~v~~~ 177 (313)
T PF00710_consen 133 PAGPGVLVVFNGRIYAARRVTKVHTNSLDAFQSPNFGPLGRVGGG 177 (313)
T ss_dssp GGTSSEEEEETTEEEETTTEEEEBSSSTTEEEETTS--SEEETTE
T ss_pred ccCCceEEEeCCCccceEEeEecccCCcccccCCCCCceEEECCE
Confidence 878999999999999999999999999999999999999999543
No 10
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-50 Score=377.96 Aligned_cols=185 Identities=33% Similarity=0.457 Sum_probs=153.8
Q ss_pred cCCCCcEEEEecCCcceeeeC-CCCceecCcchHHHHHhcCCCCCccccccCCCCccccccccccccCceeEEEEEEecC
Q psy12401 45 ESLESRVLVIYTGGTIGMIIN-NDGVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYLALPGLKHNKRVLYKVLEYDS 123 (255)
Q Consensus 45 ~~~~~rIlVI~TGGTIa~~~~-~~g~l~p~~~~~~~~L~~~p~l~~~~~~~~~~~~~~~~~lp~l~~~~~v~~~v~e~~~ 123 (255)
...+|||+||+|||||+|+.+ +.+++.|. ....+++..+|.+.. +.. -..++..++.+
T Consensus 16 ~~~l~~I~Il~TGGTIa~~~~~~t~~~~~~-~~~~~i~~~~~~v~~------------------~~~--~~~i~~~~~~n 74 (351)
T COG0252 16 NSKLPKILILATGGTIASGTDSSTGAVTPT-SGALEILALLPAVPA------------------LNI--AANIEGEQVLN 74 (351)
T ss_pred cccCCeEEEEecCCeeeccccCCCCccccc-cchHHHHHHhhhccc------------------ccc--ccceeeEEecc
Confidence 667779999999999999643 44555553 334555554443321 100 01134445554
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhcC--CCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCCCCCCCChHHHHHHH
Q psy12401 124 LLDSSNMTVDDWINIASDVFDNYEN--FDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQISIFQPRSDGVDNFIA 201 (255)
Q Consensus 124 ~~dSs~~t~~d~~~La~~I~~~~~~--~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~ 201 (255)
+||++|+|++|.+|++.|.+.+++ +|||||||||||||||||||+|++.. +|||||||||||.+++++||+.||++
T Consensus 75 -i~S~~m~~~~w~~la~~I~~~~~~~~~dGvVItHGTDTmeeTA~~L~l~l~~-~kPVVlTGamr~s~~~~sDg~~NL~~ 152 (351)
T COG0252 75 -IDSSDMTPEDWLRLAEAINEALDDGDVDGVVITHGTDTMEETAFFLSLTLNT-PKPVVLTGAMRPADAPSSDGPANLRN 152 (351)
T ss_pred -CCcccCCHHHHHHHHHHHHHHhccCCCCeEEEeCCCchHHHHHHHHHHHhcC-CCCEEEeCCCCCCCCcCCCcHHHHHH
Confidence 999999999999999999999976 49999999999999999999999855 99999999999999999999999999
Q ss_pred HHHHHhCCCC--CcEEEEeCCeEeccCCeEEccCCCCccCCCCCCCCcEEEec
Q psy12401 202 SLILAGNYVI--PEVTVYFHNKLMRGNRTIKTSTYEFDAFISPNCLPLVQVGI 252 (255)
Q Consensus 202 Av~~A~~~~~--~GV~V~f~g~l~~a~~v~K~~t~~~~aF~Sp~~gpLg~v~~ 252 (255)
|+.+|+++.. .||+++|+++||+|++++|.|+.++++|+||++||||++..
T Consensus 153 Av~vA~~~~~~~~gV~v~~~~~i~~a~~v~K~ht~~~daF~s~~~gplg~i~~ 205 (351)
T COG0252 153 AVSVAADPKSRGVGVLVVFNDRIHRGVRVTKTHTSRFDAFESPNLGPLGEIDR 205 (351)
T ss_pred HHHHhcCcccCCcEEEEecCceeeecceeeeccccchhhhcCCCCCceEEEec
Confidence 9999998654 69999999999999999999999999999999999999864
No 11
>KOG0503|consensus
Probab=100.00 E-value=3.5e-39 Score=300.16 Aligned_cols=206 Identities=33% Similarity=0.375 Sum_probs=171.0
Q ss_pred cCCCCcEEEEecCCcceeeeCCCCceecCcchHHHHHhcCCCCCccccccCCCCcccccccccccc-CceeEEEEEEecC
Q psy12401 45 ESLESRVLVIYTGGTIGMIINNDGVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYLALPGLKH-NKRVLYKVLEYDS 123 (255)
Q Consensus 45 ~~~~~rIlVI~TGGTIa~~~~~~g~l~p~~~~~~~~L~~~p~l~~~~~~~~~~~~~~~~~lp~l~~-~~~v~~~v~e~~~ 123 (255)
....||+.|+++||||+|..-+...+-+..+.+..-+...|...+..|.... -..-...+|.+.. +.++.+++.++.+
T Consensus 20 ~p~~kr~~v~~sg~~~~n~~lp~~~~~~~~g~ia~~~~~s~~~~~~~~~s~~-i~~~~~avP~v~~~~~~v~~q~~~~~s 98 (368)
T KOG0503|consen 20 APLEKRVAVKYSGGTIGNSSLPSIVIFGTGGTIAGKGTDSPTTADYAYGSLT-VIVLGGAVPAVSGSANRVYYQVLNVGS 98 (368)
T ss_pred CchhhhhhhhcccccccccccCceeecCCCCeeecccccCCccccccccccc-hhhccccCcccccccceeEEEEEeccc
Confidence 3367789999999999987555444444444444455556666655444311 0111224677766 7888999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCCCCCCCChHHHHHHHHH
Q psy12401 124 LLDSSNMTVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASL 203 (255)
Q Consensus 124 ~~dSs~~t~~d~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av 203 (255)
+.++++|...+|..+++.|++ ++|||||||||||||||||+||++++..+ ||||+||||||..+.++||+.||..|+
T Consensus 99 ~~ln~~~l~~~~~~I~~~iqk--~~~~G~VV~HGTDTLe~tAffls~~~~t~-KPIVitGa~~P~~~v~aDG~~Nl~~Av 175 (368)
T KOG0503|consen 99 LLLNITMLYNDAKRIAETLQK--KSYDGIVVTHGTDTLEETAFFLSFTINTL-KPIVITGAMRPATEVSADGPMNLYRAV 175 (368)
T ss_pred ccccHHHHHHHHHHHHHHhcc--cccCcEEEEcCcchHHHHHHHHHHHHhcC-CcEEEeccccceeeeccCCchhhhceE
Confidence 999999999999999999998 67999999999999999999999999666 999999999999999999999999999
Q ss_pred HHHhCCC--CCcEEEEeCCeEeccCCeEEccCCCCccCCCCCCCCcEEEeccc
Q psy12401 204 ILAGNYV--IPEVTVYFHNKLMRGNRTIKTSTYEFDAFISPNCLPLVQVGIEI 254 (255)
Q Consensus 204 ~~A~~~~--~~GV~V~f~g~l~~a~~v~K~~t~~~~aF~Sp~~gpLg~v~~~i 254 (255)
.+|++++ .+||+|.|+++|.+|.|.+|.+.+.+|||.||+.++||++..+.
T Consensus 176 ~iAgs~k~~~~gv~v~~n~ki~~g~~ttK~n~n~lDaf~s~~~~~Lg~i~~~~ 228 (368)
T KOG0503|consen 176 LIAGSDKSVGRGVLVPLNDKIPSGFRTTKTNVNSLDAFDSPNIGSLGIIRNNY 228 (368)
T ss_pred EEeecCcccccceeeccCCcccceeEeecccccchhhcCCcccCcchhheecc
Confidence 9999654 58999999999999999999999999999999999999997654
No 12
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=69.93 E-value=26 Score=34.43 Aligned_cols=52 Identities=19% Similarity=0.175 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHHhhcCCCeEEEEcC---CchHHHHHHHHHhhhcCC-CceEEEc
Q psy12401 130 MTVDDWINIASDVFDNYENFDGFVILHG---TDTLCYTAAALSFMFENL-GKTVIIT 182 (255)
Q Consensus 130 ~t~~d~~~La~~I~~~~~~~dG~VVtHG---TDTLeeTA~~Lsl~l~~~-~kPVVlT 182 (255)
.+++.|.+..+.+.+. .++|+++|.+. +.-...++-.|.-..... .|||+..
T Consensus 353 ~~~~~~~~al~~l~~d-p~vd~Vlv~~~~~~~~~~~~~a~~l~~~~~~~~~KPvv~~ 408 (447)
T TIGR02717 353 ATPERYAKALKTVAED-ENVDGVVVVLTPTAMTDPEEVAKGIIEGAKKSNEKPVVAG 408 (447)
T ss_pred CCHHHHHHHHHHHHcC-CCCCEEEEEccCCccCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 5677777766655542 24999998876 223355555555444455 8999665
No 13
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=69.55 E-value=12 Score=36.57 Aligned_cols=66 Identities=24% Similarity=0.189 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCCCCCCCChHHHHHHHHH
Q psy12401 130 MTVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASL 203 (255)
Q Consensus 130 ~t~~d~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av 203 (255)
-++++..+.++.+++. ++||+|+.+.|=+-+.....+ +..+++||++-+-+-|...+ | ..|..+++
T Consensus 47 ~~~~~~~~~~~~~~~~--~~d~ii~~~~tf~~~~~~~~~---~~~~~~Pvll~a~~~~~~~~--~-~~~~~~s~ 112 (452)
T cd00578 47 GTPDEARKAAEEFNEA--NCDGLIVWMHTFGPAKMWIAG---LSELRKPVLLLATQFNREIP--D-FMNLNQSA 112 (452)
T ss_pred CCHHHHHHHHHHHhhc--CCcEEEEcccccccHHHHHHH---HHhcCCCEEEEeCCCCCCCC--c-hhhhhcch
Confidence 5888888888877764 699999999999988654333 23568999999998876554 2 33555443
No 14
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=67.70 E-value=9.2 Score=31.22 Aligned_cols=49 Identities=27% Similarity=0.259 Sum_probs=33.8
Q ss_pred CCCeEEEEc-CCchHHHHHHHHHhhhc-CCCc-eEEEcCCCCCCCCCCChHHHHHHH
Q psy12401 148 NFDGFVILH-GTDTLCYTAAALSFMFE-NLGK-TVIITGSQISIFQPRSDGVDNFIA 201 (255)
Q Consensus 148 ~~dG~VVtH-GTDTLeeTA~~Lsl~l~-~~~k-PVVlTGAmrP~~~~~sDg~~NL~~ 201 (255)
..|+||++= |..||+|....+.+.-. ...| ||||-+-.- ..|....+..
T Consensus 53 ~sda~I~lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~~~g-----~w~~l~~~l~ 104 (133)
T PF03641_consen 53 SSDAFIALPGGIGTLDELFEALTLMQLGRHNKVPIILLNIDG-----FWDPLLEFLD 104 (133)
T ss_dssp HESEEEEES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEECGG-----CCHHHHHHHH
T ss_pred hCCEEEEEecCCchHHHHHHHHHHHhhccccCCCEEEeCCcc-----hHHHHHHHHH
Confidence 368999987 57999999988886432 2455 999966321 4566666543
No 15
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=64.91 E-value=21 Score=34.95 Aligned_cols=91 Identities=16% Similarity=0.070 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHHHHhhcC---CCeEEEEcC----CchHHHHHHHHHhhhcCCCceEEEcCCCCCCCCCCChHHHHHHHH
Q psy12401 130 MTVDDWINIASDVFDNYEN---FDGFVILHG----TDTLCYTAAALSFMFENLGKTVIITGSQISIFQPRSDGVDNFIAS 202 (255)
Q Consensus 130 ~t~~d~~~La~~I~~~~~~---~dG~VVtHG----TDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~A 202 (255)
...+-+.++.+.|++.++. .+||+|+|+ |.. -..+++|..+-...+|++++|=+-.|... .+|...--+.+
T Consensus 107 ~G~~~~e~i~d~ir~~~E~cD~l~gf~~~~sl~GGTGS-G~gs~l~e~l~d~y~~~~~~~~~V~P~~~-~~~~~v~~YN~ 184 (425)
T cd02187 107 EGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGS-GMGTLLISKIREEYPDRIMATFSVFPSPK-VSDTVVEPYNA 184 (425)
T ss_pred hcHHHHHHHHHHHHHhhccCCCcceEEEEeecCCCccc-cHHHHHHHHHHHhcCCcceEEEEEecCCC-cCcceeeehHH
Confidence 4667778888888887653 689999995 432 23466666655578899999999999754 23444444444
Q ss_pred HHHHhCC-C-CCcEEEEeCCeE
Q psy12401 203 LILAGNY-V-IPEVTVYFHNKL 222 (255)
Q Consensus 203 v~~A~~~-~-~~GV~V~f~g~l 222 (255)
+..-..- . .-.|+++-|+.+
T Consensus 185 ~lsl~~l~~~~d~~i~~dN~al 206 (425)
T cd02187 185 TLSVHQLVENSDETFCIDNEAL 206 (425)
T ss_pred HHHHHHHHhcCCeEEEeecHHH
Confidence 4332221 1 235555555433
No 16
>PTZ00010 tubulin beta chain; Provisional
Probab=62.68 E-value=25 Score=34.69 Aligned_cols=92 Identities=16% Similarity=0.116 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHHHHHhhc---CCCeEEEEc----CCchHHHHHHHHHhhhcCCCceEEEcCCCCCCCCCCChHHHHHHHH
Q psy12401 130 MTVDDWINIASDVFDNYE---NFDGFVILH----GTDTLCYTAAALSFMFENLGKTVIITGSQISIFQPRSDGVDNFIAS 202 (255)
Q Consensus 130 ~t~~d~~~La~~I~~~~~---~~dG~VVtH----GTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~A 202 (255)
...+-+.++.+.|++..+ ..+||+|+| ||.. -..++++..+-...+|+++++=+..|....+..-.... .+
T Consensus 108 ~g~~~~~~i~d~irk~~E~cd~l~gf~i~~Sl~GGTGS-Glgs~l~e~L~dey~~~~~~~~~v~P~~~~~~~~v~~Y-N~ 185 (445)
T PTZ00010 108 EGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGS-GMGTLLISKLREEYPDRIMMTFSVFPSPKVSDTVVEPY-NA 185 (445)
T ss_pred hhHHHHHHHHHHHhhhhhhccCccceEEEeccCCCccc-cHHHHHHHHHHhhCCccceeeeEecCCcccCccchhhh-HH
Confidence 355666777777776664 378999999 4433 23466666655677899999989999754322222222 33
Q ss_pred HH-HHhCCC-CCcEEEEeCCeEe
Q psy12401 203 LI-LAGNYV-IPEVTVYFHNKLM 223 (255)
Q Consensus 203 v~-~A~~~~-~~GV~V~f~g~l~ 223 (255)
+. ++.-.. ..+|+++-|+.++
T Consensus 186 ~lsl~~l~~~~d~~i~~dN~al~ 208 (445)
T PTZ00010 186 TLSVHQLVENADESMCIDNEALY 208 (445)
T ss_pred HHhHHHHHhcCCceeeeccHHHH
Confidence 32 222112 2456655555443
No 17
>PLN00220 tubulin beta chain; Provisional
Probab=57.16 E-value=31 Score=34.01 Aligned_cols=93 Identities=18% Similarity=0.089 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHHHHhhcC---CCeEEEEcCCc--h-HHHHHHHHHhhhcCCCceEEEcCCCCCCCCCCChHHHHHHHHH
Q psy12401 130 MTVDDWINIASDVFDNYEN---FDGFVILHGTD--T-LCYTAAALSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASL 203 (255)
Q Consensus 130 ~t~~d~~~La~~I~~~~~~---~dG~VVtHGTD--T-LeeTA~~Lsl~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av 203 (255)
..++-+..+.+.|++.+++ .+||+|+|+.. | -=..+++|..+-...+|++++|=+..|.... +|...=.+.++
T Consensus 108 ~g~~~~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~~y~~~~~~~~~v~P~~~~-~~~~v~~yN~~ 186 (447)
T PLN00220 108 EGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV-SDTVVEPYNAT 186 (447)
T ss_pred ccHHHHHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHHHHHHHHHHHhccccceeeeEEECCCcC-CCCccchhHHH
Confidence 4677788888888888765 46999999653 3 1233555555445678889999999997543 33333333434
Q ss_pred HHHhC-CC-CCcEEEEeCCeEe
Q psy12401 204 ILAGN-YV-IPEVTVYFHNKLM 223 (255)
Q Consensus 204 ~~A~~-~~-~~GV~V~f~g~l~ 223 (255)
..-.. .. .-.|+++-|+.++
T Consensus 187 lsl~~l~~~~d~~i~~dN~aL~ 208 (447)
T PLN00220 187 LSVHQLVENADECMVLDNEALY 208 (447)
T ss_pred HhHHHHHhcCCceEEeehHHHH
Confidence 32222 11 2356666665544
No 18
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=53.63 E-value=40 Score=28.29 Aligned_cols=50 Identities=12% Similarity=0.125 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCCC
Q psy12401 132 VDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQISI 188 (255)
Q Consensus 132 ~~d~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP~ 188 (255)
++....+.+.+.+ .++||+|+.....+... +.. +...++|||+.++..+.
T Consensus 41 ~~~~~~~~~~~~~--~~~d~iii~~~~~~~~~----~~~-~~~~~ipvv~~~~~~~~ 90 (264)
T cd06267 41 PEKEREALELLLS--RRVDGIILAPSRLDDEL----LEE-LAALGIPVVLVDRPLDG 90 (264)
T ss_pred HHHHHHHHHHHHH--cCcCEEEEecCCcchHH----HHH-HHHcCCCEEEecccccC
Confidence 4444444443322 25899999987766443 444 34678999999988653
No 19
>PRK02929 L-arabinose isomerase; Provisional
Probab=51.98 E-value=34 Score=34.45 Aligned_cols=69 Identities=16% Similarity=0.058 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCCCCCCCC---hHHHHHHHHH
Q psy12401 131 TVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQISIFQPRS---DGVDNFIASL 203 (255)
Q Consensus 131 t~~d~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP~~~~~s---Dg~~NL~~Av 203 (255)
++++..+..+.+.. -+++||||+.+.|=..+.+..-+ +..+.|||++=+-|.-.+-|.. .+..||.+|.
T Consensus 56 ~~~~i~~~~~~~~~-~~~~dgvi~~m~TFs~a~~~i~~---~~~l~~PvL~~~~Q~~~e~p~~~id~d~m~lnqs~ 127 (499)
T PRK02929 56 TPDEITAVCREANY-DDNCAGVITWMHTFSPAKMWIRG---LSALQKPLLHLHTQFNAEIPWDTIDMDFMNLNQSA 127 (499)
T ss_pred CHHHHHHHHHHccc-cCCCcEEEEccCCCchHHHHHHH---HHHcCCCEEEEecCCCccCCCCCCCcchhhhhhcc
Confidence 45555544433221 13499999999999998775544 4578999999998776664432 3888998654
No 20
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=51.67 E-value=31 Score=29.16 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhhcCCCceEE
Q psy12401 135 WINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVI 180 (255)
Q Consensus 135 ~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVV 180 (255)
=-+|.+.|++..+++||+||-=|-=|- |.++|-=.+...++|+|
T Consensus 53 EGelid~I~~a~~~~dgiIINpga~th--tS~Ai~DAl~~~~~P~v 96 (140)
T PF01220_consen 53 EGELIDWIHEARDDVDGIIINPGAYTH--TSIAIRDALKAISIPVV 96 (140)
T ss_dssp HHHHHHHHHHHTCTTSEEEEE-GGGGH--T-HHHHHHHHCCTS-EE
T ss_pred HHHHHHHHHHHHhhCCEEEEccchhcc--ccHHHHHHHHcCCCCEE
Confidence 457889999999889999999887663 44444445678899988
No 21
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=51.10 E-value=34 Score=33.65 Aligned_cols=66 Identities=20% Similarity=0.104 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHHhhcC---CCeEEEEcCCc--hH-HHHHHHHHhhhcCCCceEEEcCCCCCCCCCCChH
Q psy12401 130 MTVDDWINIASDVFDNYEN---FDGFVILHGTD--TL-CYTAAALSFMFENLGKTVIITGSQISIFQPRSDG 195 (255)
Q Consensus 130 ~t~~d~~~La~~I~~~~~~---~dG~VVtHGTD--TL-eeTA~~Lsl~l~~~~kPVVlTGAmrP~~~~~sDg 195 (255)
...+...++.+.|++.+++ .+||+|+|+.. |= =..+++|..+-...+|+++++=+-.|.....+|-
T Consensus 108 ~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d~y~~~~~~~~~V~P~~~~~s~~ 179 (431)
T cd02188 108 QGEEVQEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDRYPKKLIQTYSVFPNQDESSDV 179 (431)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcceeEEEecCCCCcchhHHHHHHHHHHhHcCcceeeeEEecCCCccCCCc
Confidence 3567778888888887653 68999999543 21 2345555554456789999999999975444444
No 22
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=50.81 E-value=93 Score=26.39 Aligned_cols=72 Identities=13% Similarity=-0.000 Sum_probs=39.4
Q ss_pred HHHHhhc-CCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCCC---CCCCChHHHHHHHHHHHHhCCCCCcEEE
Q psy12401 141 DVFDNYE-NFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQISI---FQPRSDGVDNFIASLILAGNYVIPEVTV 216 (255)
Q Consensus 141 ~I~~~~~-~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP~---~~~~sDg~~NL~~Av~~A~~~~~~GV~V 216 (255)
.+++... .+||+|+.....+- ..+..+. ..++|||+-+...+. .....|-...-..+..........-|.+
T Consensus 46 ~i~~~~~~~vdgiii~~~~~~~----~~~~~~~-~~~ipvV~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g~~~i~~ 120 (266)
T cd06278 46 ALRQLLQYRVDGVIVTSGTLSS----ELAEECR-RNGIPVVLINRYVDGPGVDAVCSDNYEAGRLAAELLLAKGCRRIAF 120 (266)
T ss_pred HHHHHHHcCCCEEEEecCCCCH----HHHHHHh-hcCCCEEEECCccCCCCCCEEEEChHHHHHHHHHHHHHCCCceEEE
Confidence 3444343 48999998654332 2355533 568999999887653 2344555555555554444322223444
Q ss_pred E
Q psy12401 217 Y 217 (255)
Q Consensus 217 ~ 217 (255)
+
T Consensus 121 i 121 (266)
T cd06278 121 I 121 (266)
T ss_pred E
Confidence 4
No 23
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=50.38 E-value=31 Score=31.73 Aligned_cols=60 Identities=22% Similarity=0.124 Sum_probs=41.7
Q ss_pred HHHHhhc-CCC-eEEEE----cCCchHHHHHHHHHhhhcCCCceEEEcCCCCCCCCCCChHHHHHHHHHHHHh
Q psy12401 141 DVFDNYE-NFD-GFVIL----HGTDTLCYTAAALSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAG 207 (255)
Q Consensus 141 ~I~~~~~-~~d-G~VVt----HGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av~~A~ 207 (255)
.+++.+. .+| +|+|. .|.||+. ||+.|+-.+....--+||||. .++||..-...+...+.
T Consensus 72 ~lr~aLAmGaD~avli~d~~~~g~D~~~-tA~~La~ai~~~~~DLVl~G~------~s~D~~tgqvg~~lAe~ 137 (256)
T PRK03359 72 GRKDVLSRGPDELIVVIDDQFEQALPQQ-TASALAAAAQKAGFDLILCGD------GSSDLYAQQVGLLVGEI 137 (256)
T ss_pred HHHHHHHcCCCEEEEEecCcccCcCHHH-HHHHHHHHHHHhCCCEEEEcC------ccccCCCCcHHHHHHHH
Confidence 3455554 355 77775 5899987 899999888776777999995 35676666655554443
No 24
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=50.18 E-value=39 Score=29.21 Aligned_cols=50 Identities=22% Similarity=0.299 Sum_probs=35.0
Q ss_pred cCCCeEEEEc-CCchHHHHHHHHHhh-hcCCCceEEEcCCCCCCCCCCChHHHHHHH
Q psy12401 147 ENFDGFVILH-GTDTLCYTAAALSFM-FENLGKTVIITGSQISIFQPRSDGVDNFIA 201 (255)
Q Consensus 147 ~~~dG~VVtH-GTDTLeeTA~~Lsl~-l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~ 201 (255)
+..|+||++= |..||+|....+.+. +....||||+.+- ....|....+.+
T Consensus 95 ~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~-----~g~~~~l~~~l~ 146 (178)
T TIGR00730 95 ELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNV-----NGHFDGLVEWLK 146 (178)
T ss_pred HhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECC-----cchHHHHHHHHH
Confidence 4479999886 689999999988763 2346899998752 234555555544
No 25
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=49.53 E-value=52 Score=24.63 Aligned_cols=48 Identities=13% Similarity=0.235 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhh-c--CCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcC
Q psy12401 134 DWINIASDVFDNY-E--NFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITG 183 (255)
Q Consensus 134 d~~~La~~I~~~~-~--~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTG 183 (255)
|+.+.+..|.+.+ . +.+.++|.+|.+ +.+.-.+-.+. .....||+||.
T Consensus 7 dRyeTs~~va~~~~~~~~~~~v~ia~g~~-~~Dalsa~~~a-~~~~~PIll~~ 57 (92)
T PF04122_consen 7 DRYETSAKVAKKFYPDNKSDKVYIASGDN-FADALSASPLA-AKNNAPILLVN 57 (92)
T ss_pred CHHHHHHHHHHHhcccCCCCEEEEEeCcc-hhhhhhhHHHH-HhcCCeEEEEC
Confidence 3445555555554 2 589999999977 44433333332 24678999998
No 26
>PRK00865 glutamate racemase; Provisional
Probab=49.45 E-value=1.2e+02 Score=27.45 Aligned_cols=52 Identities=13% Similarity=0.115 Sum_probs=34.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhc--CCCeEEEEcCCchHHHHHHHHHhhhcCCCceEE
Q psy12401 125 LDSSNMTVDDWINIASDVFDNYE--NFDGFVILHGTDTLCYTAAALSFMFENLGKTVI 180 (255)
Q Consensus 125 ~dSs~~t~~d~~~La~~I~~~~~--~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVV 180 (255)
.|--+-+.++..+++..+-+.+. ++|.+||.+=|+|- ++++.+-...+.|||
T Consensus 42 ~PYG~ks~~~i~~~~~~~~~~L~~~g~d~iVIaCNTa~~----~~l~~lr~~~~iPvi 95 (261)
T PRK00865 42 FPYGEKSEEEIRERTLEIVEFLLEYGVKMLVIACNTASA----VALPDLRERYDIPVV 95 (261)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCchHHH----HHHHHHHHhCCCCEE
Confidence 34555678888887766665553 48999999998862 344443334567766
No 27
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=49.33 E-value=1.3e+02 Score=25.12 Aligned_cols=32 Identities=13% Similarity=0.178 Sum_probs=23.2
Q ss_pred CCCCCHHHHHHHHHHHHHhhcC-CCeEEEEcCC
Q psy12401 127 SSNMTVDDWINIASDVFDNYEN-FDGFVILHGT 158 (255)
Q Consensus 127 Ss~~t~~d~~~La~~I~~~~~~-~dG~VVtHGT 158 (255)
.-.++++.+.+|.+.+++.-.+ -..+||++|.
T Consensus 20 ~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~ 52 (195)
T cd06558 20 RNALSLEMLDELAAALDEAEADPDVRVVVLTGA 52 (195)
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC
Confidence 5567889999999999877643 3456666664
No 28
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=49.25 E-value=45 Score=32.74 Aligned_cols=66 Identities=17% Similarity=0.255 Sum_probs=48.9
Q ss_pred eeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHh--h--cC--CCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCC
Q psy12401 113 RVLYKVLEYDSLLDSSNMTVDDWINIASDVFDN--Y--EN--FDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGS 184 (255)
Q Consensus 113 ~v~~~v~e~~~~~dSs~~t~~d~~~La~~I~~~--~--~~--~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGA 184 (255)
..++-.+.|+..=-..|+|.++|.+|++.+.+. + -| |.|| |.. ||+=|+.|-+++ ...++++++.|
T Consensus 172 ~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF----~~G-leeDa~~lR~~a-~~~~~~lva~S 243 (396)
T COG1448 172 GSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGF----ADG-LEEDAYALRLFA-EVGPELLVASS 243 (396)
T ss_pred CCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhh----ccc-hHHHHHHHHHHH-HhCCcEEEEeh
Confidence 334455677766678899999999999999864 2 13 7787 455 999999999966 45566766654
No 29
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=48.75 E-value=1.3e+02 Score=26.74 Aligned_cols=33 Identities=12% Similarity=0.074 Sum_probs=24.5
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCC-CeEEEEcCCc
Q psy12401 127 SSNMTVDDWINIASDVFDNYENF-DGFVILHGTD 159 (255)
Q Consensus 127 Ss~~t~~d~~~La~~I~~~~~~~-dG~VVtHGTD 159 (255)
---|+++.+.+|.+.+++.-.+- -.+||+.|..
T Consensus 21 ~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g 54 (248)
T PRK06072 21 LNALNLEMRNEFISKLKQINADPKIRVVIVTGEG 54 (248)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC
Confidence 35689999999999998876543 2566666765
No 30
>KOG1432|consensus
Probab=47.13 E-value=39 Score=32.90 Aligned_cols=54 Identities=22% Similarity=0.219 Sum_probs=42.0
Q ss_pred HHHHHHhhhcCCCce--EEEcCCCCCCCCCCChHHHHHHHHHHHHhCCCCCcEEEEeC
Q psy12401 164 TAAALSFMFENLGKT--VIITGSQISIFQPRSDGVDNFIASLILAGNYVIPEVTVYFH 219 (255)
Q Consensus 164 TA~~Lsl~l~~~~kP--VVlTGAmrP~~~~~sDg~~NL~~Av~~A~~~~~~GV~V~f~ 219 (255)
|-.|++-+| +++|| |||||-..-. ..-.|+..-|..|+.=|.+..+|-+.+.=|
T Consensus 88 Tt~F~~rvL-~sE~PDlVVfTGD~i~g-~~t~Da~~sl~kAvaP~I~~~IPwA~~lGN 143 (379)
T KOG1432|consen 88 TTNFVSRVL-ASEKPDLVVFTGDNIFG-HSTQDAATSLMKAVAPAIDRKIPWAAVLGN 143 (379)
T ss_pred HHHHHHHHH-hccCCCEEEEeCCcccc-cccHhHHHHHHHHhhhHhhcCCCeEEEecc
Confidence 566778766 77888 9999999888 467888888888888887777777665443
No 31
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=46.97 E-value=1.5e+02 Score=25.18 Aligned_cols=50 Identities=12% Similarity=0.228 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCC
Q psy12401 131 TVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQIS 187 (255)
Q Consensus 131 t~~d~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP 187 (255)
.++.+..+.+.+.+. .+|||||...+.... .+..+ ...++|||+.+...+
T Consensus 40 ~~~~~~~~~~~l~~~--~vdgiIi~~~~~~~~----~~~~l-~~~~ipvV~~~~~~~ 89 (265)
T cd06299 40 NPETENRYLDNLLSQ--RVDGIIVVPHEQSAE----QLEDL-LKRGIPVVFVDREIT 89 (265)
T ss_pred CHHHHHHHHHHHHhc--CCCEEEEcCCCCChH----HHHHH-HhCCCCEEEEecccC
Confidence 455555555544432 489999986543322 24443 356899999997643
No 32
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=45.80 E-value=1.5e+02 Score=26.41 Aligned_cols=32 Identities=9% Similarity=0.159 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCeEEEEcCCc
Q psy12401 128 SNMTVDDWINIASDVFDNYENFDGFVILHGTD 159 (255)
Q Consensus 128 s~~t~~d~~~La~~I~~~~~~~dG~VVtHGTD 159 (255)
--++++.+.+|.+.+.+.-++--.+||+.|..
T Consensus 22 Nal~~~~~~~l~~al~~~~~~~vr~vvl~g~g 53 (243)
T PRK07854 22 NALNAELCEELREAVRKAVDESARAIVLTGQG 53 (243)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 56899999999999987654433677777765
No 33
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=45.60 E-value=57 Score=31.20 Aligned_cols=90 Identities=20% Similarity=0.175 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHHhhcC---CCeEEEEc----CCchHHHHHHHHHhhhcCCCceEEEcCCCCCCCCCCChHHHHHHHHH
Q psy12401 131 TVDDWINIASDVFDNYEN---FDGFVILH----GTDTLCYTAAALSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASL 203 (255)
Q Consensus 131 t~~d~~~La~~I~~~~~~---~dG~VVtH----GTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av 203 (255)
.++.+.++.+.|++.+++ .+||+|+| ||.+ -..+.++..+-...+|..++|=+-.|....+ |-..-.+.++
T Consensus 68 g~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTGS-G~gs~l~e~l~d~y~~~~i~~~~v~P~~~~~-~~~v~~yN~~ 145 (382)
T cd06059 68 GPELIDEILDRIRKQVEKCDSLQGFQITHSLGGGTGS-GLGSLLLELLSDEYPKILINTFSIFPSPQGS-SNVVEPYNSI 145 (382)
T ss_pred CHHHHHHHHHHHHHHHHhCCCcCceEEEEecCCCcch-hHHHHHHHHHHHhcCccceEeEEEeccCccC-CccccchHHH
Confidence 467788888888888765 56999999 4543 2345555554445667888888888876432 2233333333
Q ss_pred HHHhCC--CCCcEEEEeCCeE
Q psy12401 204 ILAGNY--VIPEVTVYFHNKL 222 (255)
Q Consensus 204 ~~A~~~--~~~GV~V~f~g~l 222 (255)
..-.+- ..-.+++.-|+.+
T Consensus 146 lsl~~L~e~sd~~i~~~N~~l 166 (382)
T cd06059 146 LSLNHLLENSDSVILFDNEAL 166 (382)
T ss_pred HhHHHHHhcCCeeEEeehHHH
Confidence 322211 1235665555544
No 34
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=45.58 E-value=35 Score=29.08 Aligned_cols=43 Identities=23% Similarity=0.218 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhhcCCCceEE
Q psy12401 136 INIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVI 180 (255)
Q Consensus 136 ~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVV 180 (255)
-+|.++|++..+++||+||-=|-=| .|.++|-=++...++|+|
T Consensus 55 GelId~i~~a~~~~dgiIINpga~T--HtSiAl~DAl~~~~~P~V 97 (146)
T PRK13015 55 GELIDWIHEARGDVAGIVINPGAYT--HTSVAIRDALAALELPVI 97 (146)
T ss_pred HHHHHHHHHhhhcCCEEEEcchHHh--hhHHHHHHHHHcCCCCEE
Confidence 4678888888777999999877443 345555545667899988
No 35
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=44.55 E-value=1.6e+02 Score=26.28 Aligned_cols=32 Identities=13% Similarity=0.009 Sum_probs=24.4
Q ss_pred CCCCHHHHHHHHHHHHHhhcC-CCeEEEEcCCc
Q psy12401 128 SNMTVDDWINIASDVFDNYEN-FDGFVILHGTD 159 (255)
Q Consensus 128 s~~t~~d~~~La~~I~~~~~~-~dG~VVtHGTD 159 (255)
-.++++.|.+|.+.+++.-.+ --.+||+.|++
T Consensus 25 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g 57 (254)
T PRK08252 25 NAVNAAVAQGLAAALDELDADPDLSVGILTGAG 57 (254)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC
Confidence 458999999999999887544 23667777876
No 36
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=44.51 E-value=36 Score=28.98 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhhcCCCceEE
Q psy12401 135 WINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVI 180 (255)
Q Consensus 135 ~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVV 180 (255)
=-+|.++|++..+++||+||-=|-=| .|.++|-=.+...++|+|
T Consensus 54 EGelId~I~~a~~~~dgiiINpga~T--HtSiAl~DAl~~~~~P~V 97 (146)
T PRK05395 54 EGELIDRIHEARDGADGIIINPGAYT--HTSVALRDALAAVSIPVI 97 (146)
T ss_pred HHHHHHHHHhcccCCcEEEECchHHH--HHHHHHHHHHHcCCCCEE
Confidence 35678888888878999999877544 244555444667899988
No 37
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=44.11 E-value=56 Score=28.03 Aligned_cols=91 Identities=13% Similarity=0.048 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHHHHhhcCCCeEEEEcC----CchHHHHHHHHHhhhcCCCceEEEcCCCCCCCCCCChHHHHHHHHHHH
Q psy12401 130 MTVDDWINIASDVFDNYENFDGFVILHG----TDTLCYTAAALSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLIL 205 (255)
Q Consensus 130 ~t~~d~~~La~~I~~~~~~~dG~VVtHG----TDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av~~ 205 (255)
...+-+.+..+.|++.++++|+|+|+|| |.+- .+..++.. +...++++ ++=+-.|......--+.|-..++.-
T Consensus 64 ~g~~~~~~~~~~ir~~le~~d~~~i~~slgGGTGsG-~~~~i~~~-~~~~~~~~-~~~~v~P~~~e~~~~~~Na~~~l~~ 140 (192)
T smart00864 64 VGREAAEESLDEIREELEGADGVFITAGMGGGTGTG-AAPVIAEI-AKEYGILT-VAVVTKPFVFEGVVRPYNAELGLEE 140 (192)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeccCCCCcccc-HHHHHHHH-HHHcCCcE-EEEEEEeEeecchhHHHHHHHHHHH
Confidence 3455666777888888888999999995 5442 23334443 33555555 5556677332222223343333333
Q ss_pred HhCCCCCcEEEEeCCeEec
Q psy12401 206 AGNYVIPEVTVYFHNKLMR 224 (255)
Q Consensus 206 A~~~~~~GV~V~f~g~l~~ 224 (255)
... ....|+++.|+.++.
T Consensus 141 l~~-~~d~~i~~dN~~l~~ 158 (192)
T smart00864 141 LRE-HVDSLIVIDNDALLD 158 (192)
T ss_pred HHH-hCCEEEEEEhHHHHH
Confidence 222 235777777776653
No 38
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=43.79 E-value=63 Score=32.46 Aligned_cols=53 Identities=17% Similarity=0.014 Sum_probs=39.6
Q ss_pred cCCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCC----CCCCCCChHHHHHHHHH
Q psy12401 147 ENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQI----SIFQPRSDGVDNFIASL 203 (255)
Q Consensus 147 ~~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmr----P~~~~~sDg~~NL~~Av 203 (255)
+++||||+.+.|=..+.+..-+ +..++|||++=+-|. |+..+. ....|+.+|.
T Consensus 65 ~~~dgvi~~m~TFs~a~~~i~~---~~~l~~PvL~~~~q~~~~l~~~sid-md~m~l~qaa 121 (484)
T cd03557 65 DNCAGVITWMHTFSPAKMWIAG---LTALQKPLLHLHTQFNREIPWDTID-MDFMNLNQSA 121 (484)
T ss_pred CCccEEEEccCCCchHHHHHHH---HHHcCCCEEEEccCCCccCCCCCcc-chHHhhhhhc
Confidence 4599999999999998775444 457899999988884 333444 3577888875
No 39
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=43.65 E-value=1e+02 Score=25.93 Aligned_cols=53 Identities=23% Similarity=0.223 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCCC
Q psy12401 131 TVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQISI 188 (255)
Q Consensus 131 t~~d~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP~ 188 (255)
+++...++.+.+... ++||||+...+. .+....+..+. ..++|+|+.+.-.+.
T Consensus 40 ~~~~~~~~~~~l~~~--~vdgvi~~~~~~--~~~~~~~~~l~-~~~ip~V~~~~~~~~ 92 (267)
T cd01536 40 DVSKQIQQIEDLIAQ--GVDGIIISPVDS--AALTPALKKAN-AAGIPVVTVDSDIDG 92 (267)
T ss_pred CHHHHHHHHHHHHHc--CCCEEEEeCCCc--hhHHHHHHHHH-HCCCcEEEecCCCCc
Confidence 566666655554333 589999975432 33333445533 467999998875543
No 40
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=43.50 E-value=1.7e+02 Score=23.50 Aligned_cols=42 Identities=10% Similarity=0.073 Sum_probs=32.9
Q ss_pred CeEEEEc-CCchHHHHHHHHHhhhcCCCceEEEcCCCCCCCCCCC
Q psy12401 150 DGFVILH-GTDTLCYTAAALSFMFENLGKTVIITGSQISIFQPRS 193 (255)
Q Consensus 150 dG~VVtH-GTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP~~~~~s 193 (255)
-+++++| |+..+.-+..+..... ...|||+-.+++|......
T Consensus 60 ~~v~~~~~gpG~~n~~~~l~~A~~--~~~Pll~i~~~~~~~~~~~ 102 (155)
T cd07035 60 PGVVLVTSGPGLTNAVTGLANAYL--DSIPLLVITGQRPTAGEGR 102 (155)
T ss_pred CEEEEEcCCCcHHHHHHHHHHHHh--hCCCEEEEeCCCccccccC
Confidence 5788888 9999988877777643 3899999999999876653
No 41
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=43.49 E-value=39 Score=28.62 Aligned_cols=44 Identities=20% Similarity=0.263 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhhcCCCceEE
Q psy12401 135 WINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVI 180 (255)
Q Consensus 135 ~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVV 180 (255)
=-+|.++|++..+++||+||-=|-=| .|.++|-=.+...++|+|
T Consensus 52 EGelId~i~~a~~~~dgiIINpga~T--HtSiAl~DAl~~~~~P~v 95 (141)
T TIGR01088 52 EGQLIDKIHEAEGQYDGIIINPGALT--HTSVALRDALAAVSLPVV 95 (141)
T ss_pred HHHHHHHHHhccccCCEEEEcChHHh--hhHHHHHHHHHcCCCCEE
Confidence 34678888888777999999877544 234555444667899988
No 42
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=43.30 E-value=41 Score=29.04 Aligned_cols=46 Identities=15% Similarity=0.180 Sum_probs=25.9
Q ss_pred HHHHhhc-CCCeEEEEcCCchHHH-HHHHHHhhhcCCCceEEEcCCCCC
Q psy12401 141 DVFDNYE-NFDGFVILHGTDTLCY-TAAALSFMFENLGKTVIITGSQIS 187 (255)
Q Consensus 141 ~I~~~~~-~~dG~VVtHGTDTLee-TA~~Lsl~l~~~~kPVVlTGAmrP 187 (255)
.+++.+. .+||+|+.-.++.... ...++..+ ...++|||+-+...+
T Consensus 47 ~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~-~~~~ipvV~~~~~~~ 94 (273)
T cd01541 47 CLENMLSQGIDGLIIEPTKSALPNPNIDLYLKL-EKLGIPYVFINASYE 94 (273)
T ss_pred HHHHHHHcCCCEEEEeccccccccccHHHHHHH-HHCCCCEEEEecCCC
Confidence 3444343 4899999865432211 11233332 355789999987654
No 43
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=42.44 E-value=1.8e+02 Score=25.45 Aligned_cols=40 Identities=8% Similarity=0.131 Sum_probs=27.8
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHHHHHhhcCCCeEEEEcCCc
Q psy12401 118 VLEYDSLLDSSNMTVDDWINIASDVFDNYENFDGFVILHGTD 159 (255)
Q Consensus 118 v~e~~~~~dSs~~t~~d~~~La~~I~~~~~~~dG~VVtHGTD 159 (255)
++.+.+. +.--++++.+.+|.+.+.+.-++ .++||+.|..
T Consensus 15 ~itln~~-~~Nal~~~~~~~l~~~l~~~~~~-~~vvvl~g~g 54 (229)
T PRK06213 15 TITLDDG-KVNALSPAMIDALNAALDQAEDD-RAVVVITGQP 54 (229)
T ss_pred EEEeCCC-CCCCCCHHHHHHHHHHHHHhhcc-CcEEEEeCCC
Confidence 3444432 34678999999999999876533 4778887864
No 44
>PLN00222 tubulin gamma chain; Provisional
Probab=42.27 E-value=54 Score=32.50 Aligned_cols=93 Identities=19% Similarity=0.089 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHHHHhhc---CCCeEEEEcC----CchHHHHHHHHHhhhcCCCceEEEcCCCCCCCCCCChH---HHHH
Q psy12401 130 MTVDDWINIASDVFDNYE---NFDGFVILHG----TDTLCYTAAALSFMFENLGKTVIITGSQISIFQPRSDG---VDNF 199 (255)
Q Consensus 130 ~t~~d~~~La~~I~~~~~---~~dG~VVtHG----TDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP~~~~~sDg---~~NL 199 (255)
..++....+.+.|++.++ ..+||+|+|+ |.. =..+++|..+-...+|+++++=+-.|.....+|- +-|-
T Consensus 110 ~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~sl~GGTGS-Glgs~lle~L~d~y~~~~~~~~~v~P~~~~~~~~vv~~YN~ 188 (454)
T PLN00222 110 QGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGS-GMGSYLLEALNDRYSKKLVQTYSVFPNQMETSDVVVQPYNS 188 (454)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccceEEeecCCCCccc-hHHHHHHHHHHhhcCCcceeeEEecCCCcccCCceeeecHH
Confidence 356777888888887654 3689999994 433 2345555554456788889999999965333433 4454
Q ss_pred HHHHHHHhCCCCCcEEEEeCCeEec
Q psy12401 200 IASLILAGNYVIPEVTVYFHNKLMR 224 (255)
Q Consensus 200 ~~Av~~A~~~~~~GV~V~f~g~l~~ 224 (255)
.-++..... ..-+|+++-|..++.
T Consensus 189 ~lsl~~l~~-~~D~~~~~dN~al~~ 212 (454)
T PLN00222 189 LLTLKRLTL-NADCVVVLDNTALNR 212 (454)
T ss_pred HHhHHHHHh-cCCeeeEecHHHHHH
Confidence 444433322 223555555554443
No 45
>KOG1455|consensus
Probab=42.23 E-value=25 Score=33.46 Aligned_cols=29 Identities=34% Similarity=0.582 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHHhhcCC-CeEEEEcCCc
Q psy12401 131 TVDDWINIASDVFDNYENF-DGFVILHGTD 159 (255)
Q Consensus 131 t~~d~~~La~~I~~~~~~~-dG~VVtHGTD 159 (255)
|--++++....+++++.++ --|+|+||||
T Consensus 227 T~~ElLr~~~~le~~l~~vtvPflilHG~d 256 (313)
T KOG1455|consen 227 TAYELLRVTADLEKNLNEVTVPFLILHGTD 256 (313)
T ss_pred HHHHHHHHHHHHHHhcccccccEEEEecCC
Confidence 5567888888888888875 5999999997
No 46
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=42.11 E-value=1.8e+02 Score=26.16 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHHHHHHhhcCC-CeEEEEcCCc
Q psy12401 128 SNMTVDDWINIASDVFDNYENF-DGFVILHGTD 159 (255)
Q Consensus 128 s~~t~~d~~~La~~I~~~~~~~-dG~VVtHGTD 159 (255)
--++++.+.+|.+.+++.-.+- -.+||++|+.
T Consensus 33 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g 65 (269)
T PRK06127 33 NAMSLDMWEALPQALAAAEDDDAIRVVVLTGAG 65 (269)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCC
Confidence 5588999999999998776553 3677778874
No 47
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=41.96 E-value=44 Score=28.30 Aligned_cols=43 Identities=23% Similarity=0.244 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhhcCCCceEE
Q psy12401 136 INIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVI 180 (255)
Q Consensus 136 ~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVV 180 (255)
-+|.++|++..+++||+||-=|-=| .|.++|-=++...++|+|
T Consensus 53 gelid~I~~a~~~~dgiIINpga~T--HtSvAi~DAl~~~~~P~V 95 (140)
T cd00466 53 GELIDWIHEARDGADGIIINPGAYT--HTSIALRDALAAVSIPVI 95 (140)
T ss_pred HHHHHHHHHhhccCcEEEEcchHHH--HHHHHHHHHHHcCCCCEE
Confidence 4678888888777999999877444 234444444667889988
No 48
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=41.94 E-value=1.9e+02 Score=25.69 Aligned_cols=41 Identities=10% Similarity=0.148 Sum_probs=28.1
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHHHHHhhcC-CCeEEEEcCCc
Q psy12401 118 VLEYDSLLDSSNMTVDDWINIASDVFDNYEN-FDGFVILHGTD 159 (255)
Q Consensus 118 v~e~~~~~dSs~~t~~d~~~La~~I~~~~~~-~dG~VVtHGTD 159 (255)
++.+.+. +...++++.+.+|.+.+.+.-.+ --.+||++|..
T Consensus 14 ~itl~rp-~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g 55 (257)
T PRK07658 14 VITLNHP-PANALSSQVLHELSELLDQVEKDDNVRVVVIHGEG 55 (257)
T ss_pred EEEECCC-CCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC
Confidence 3444443 35779999999999999877644 23666667765
No 49
>cd00455 nuc_hydro nuc_hydro: Nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar to the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium, the purine-specific inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax and, pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases such as URH1 from Saccharomyces cerevisiae, RihA and RihB from Escherichia coli. Nucleoside hydrolases are of interest as a target for antiprotozoan drugs as, no nucleoside hydrolase activity or genes encoding these enzymes have been detected in humans and, parasitic protozoans lack de novo purine synthesis relying on nucleosid
Probab=41.68 E-value=69 Score=29.52 Aligned_cols=60 Identities=17% Similarity=0.224 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCeEEEEcCCchHHHHHH----HHHhhhcCCCceEEEcCCCCCCC
Q psy12401 128 SNMTVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAA----ALSFMFENLGKTVIITGSQISIF 189 (255)
Q Consensus 128 s~~t~~d~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~----~Lsl~l~~~~kPVVlTGAmrP~~ 189 (255)
.|...+|..+|+-.+...--+.-||.+++|--+++.++- .|.++ .....| |.-|+.+|+.
T Consensus 5 tD~g~DDa~Al~~~l~~~~~~l~gIt~~~Gn~~~~~~~~n~~~~l~~~-g~~~iP-V~~G~~~pl~ 68 (295)
T cd00455 5 TDPGIDDAFALMYALLHPEIELVGIVATYGNVTLEQATQNAAYLLELL-GRLDIP-VYAGATRPLT 68 (295)
T ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeccCCccHHHHHHHHHHHHHHh-CCCCCC-EeCCCCCCCC
Confidence 456689999998776542113679999999988877653 45542 334577 7788888875
No 50
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=41.60 E-value=2e+02 Score=25.66 Aligned_cols=32 Identities=16% Similarity=0.112 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHHHHHHhhcC-CCeEEEEcCCc
Q psy12401 128 SNMTVDDWINIASDVFDNYEN-FDGFVILHGTD 159 (255)
Q Consensus 128 s~~t~~d~~~La~~I~~~~~~-~dG~VVtHGTD 159 (255)
--++++.+.+|.+.+.+.-.+ --.+||+.|..
T Consensus 26 Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g 58 (260)
T PRK05809 26 NALNSETLKELDTVLDDIENDDNVYAVILTGAG 58 (260)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCC
Confidence 458999999999999876543 23556666654
No 51
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=40.88 E-value=2e+02 Score=25.63 Aligned_cols=33 Identities=12% Similarity=0.124 Sum_probs=25.3
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCC-CeEEEEcCCc
Q psy12401 127 SSNMTVDDWINIASDVFDNYENF-DGFVILHGTD 159 (255)
Q Consensus 127 Ss~~t~~d~~~La~~I~~~~~~~-dG~VVtHGTD 159 (255)
.-.++++.+.+|.+.+.+.-.+- -.+||+.|++
T Consensus 23 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g 56 (255)
T PRK07260 23 SNGFNIPMCQEILEALRLAEEDPSVRFLLINANG 56 (255)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC
Confidence 35699999999999998766443 3677778876
No 52
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=40.54 E-value=1.5e+02 Score=27.49 Aligned_cols=88 Identities=14% Similarity=0.091 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEcC----CchHHHHHHHHHhhhcCCCceEEEcCCCCCCCCCCChHHHHHHHHHHHHhC
Q psy12401 133 DDWINIASDVFDNYENFDGFVILHG----TDTLCYTAAALSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAGN 208 (255)
Q Consensus 133 ~d~~~La~~I~~~~~~~dG~VVtHG----TDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av~~A~~ 208 (255)
+-+.+..+.|++.++++|.++|+|| |.|=. |..+.-+.....++++-.- -.|....+.--+.|=..++.-...
T Consensus 69 ~~a~~~~~~I~~~l~~~d~v~i~aglGGGTGSG~--ap~ia~~a~e~g~~~~~vv-t~Pf~~Eg~~~~~nA~~~l~~L~~ 145 (304)
T cd02201 69 KAAEESREEIKEALEGADMVFITAGMGGGTGTGA--APVIAKIAKEMGALTVAVV-TKPFSFEGKKRMRQAEEGLEELRK 145 (304)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeeccCCCcchhH--HHHHHHHHHHcCCCEEEEE-eCCccccchhHHHHHHHHHHHHHH
Confidence 3445556677788888999999996 66643 3334333445566544333 466654444445555555544433
Q ss_pred CCCCcEEEEeCCeEec
Q psy12401 209 YVIPEVTVYFHNKLMR 224 (255)
Q Consensus 209 ~~~~GV~V~f~g~l~~ 224 (255)
....++++-|++++.
T Consensus 146 -~~d~~ividN~~L~~ 160 (304)
T cd02201 146 -HVDTLIVIPNDKLLE 160 (304)
T ss_pred -hCCEEEEEecHHHHH
Confidence 234677777777665
No 53
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=40.29 E-value=2e+02 Score=25.60 Aligned_cols=33 Identities=12% Similarity=0.101 Sum_probs=24.9
Q ss_pred CCCCCHHHHHHHHHHHHHhhcC-CCeEEEEcCCc
Q psy12401 127 SSNMTVDDWINIASDVFDNYEN-FDGFVILHGTD 159 (255)
Q Consensus 127 Ss~~t~~d~~~La~~I~~~~~~-~dG~VVtHGTD 159 (255)
.-.++++.+.+|.+.+.+.-.+ --.+||++|..
T Consensus 27 ~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g 60 (251)
T PRK06023 27 KNAITRAMYATMAKALKAADADDAIRAHVFLGTE 60 (251)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC
Confidence 3568999999999999877654 33666777875
No 54
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=39.39 E-value=2.1e+02 Score=25.47 Aligned_cols=32 Identities=6% Similarity=0.138 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHHHHHHHhhcC-CCeEEEEcCCc
Q psy12401 128 SNMTVDDWINIASDVFDNYEN-FDGFVILHGTD 159 (255)
Q Consensus 128 s~~t~~d~~~La~~I~~~~~~-~dG~VVtHGTD 159 (255)
-.++++.+.+|.+.+++.-++ --.+||++|..
T Consensus 24 Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g 56 (255)
T PRK09674 24 NALNNALLTQLVNELEAAATDTSIGVCVITGNA 56 (255)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence 568999999999999877644 23667777764
No 55
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=39.37 E-value=2.3e+02 Score=25.29 Aligned_cols=33 Identities=9% Similarity=0.114 Sum_probs=24.9
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCeEEEEcCCc
Q psy12401 127 SSNMTVDDWINIASDVFDNYENFDGFVILHGTD 159 (255)
Q Consensus 127 Ss~~t~~d~~~La~~I~~~~~~~dG~VVtHGTD 159 (255)
--.++++.+.+|.+.+++.-.+--.+||++|..
T Consensus 20 ~Nal~~~~~~~l~~~l~~~~~d~v~~vVltg~g 52 (256)
T TIGR02280 20 LNSFTAEMHLELREALERVERDDARALMLTGAG 52 (256)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCcEEEEEECCC
Confidence 345899999999999987653325677777876
No 56
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=38.89 E-value=62 Score=29.31 Aligned_cols=51 Identities=16% Similarity=0.135 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCCCC
Q psy12401 131 TVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQISIF 189 (255)
Q Consensus 131 t~~d~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP~~ 189 (255)
.++.+..+++.+.+ .++| +||+-||+..... ... +.+. +||||+|-.-|..
T Consensus 44 d~~~~~~~~~~l~~--~~~D-lIi~~gt~aa~~~---~~~-~~~~-iPVVf~~V~dp~~ 94 (294)
T PF04392_consen 44 DPEKLRQIARKLKA--QKPD-LIIAIGTPAAQAL---AKH-LKDD-IPVVFCGVSDPVG 94 (294)
T ss_dssp -HHHHHHHHHHHCC--TS-S-EEEEESHHHHHHH---HHH--SS--S-EEEECES-TTT
T ss_pred CHHHHHHHHHHHhc--CCCC-EEEEeCcHHHHHH---HHh-cCCC-cEEEEEeccChhh
Confidence 34554444443322 1367 7777787764332 233 3232 9999999966643
No 57
>PLN02600 enoyl-CoA hydratase
Probab=38.42 E-value=2.3e+02 Score=25.29 Aligned_cols=31 Identities=10% Similarity=0.048 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHHHHHHhhcC-CCeEEEEcCC
Q psy12401 128 SNMTVDDWINIASDVFDNYEN-FDGFVILHGT 158 (255)
Q Consensus 128 s~~t~~d~~~La~~I~~~~~~-~dG~VVtHGT 158 (255)
--++++.+.+|.+.+++.-.+ --.+||++|.
T Consensus 17 Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~ 48 (251)
T PLN02600 17 NAIGKEMLRGLRSAFEKIQADASARVVMLRSS 48 (251)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEecC
Confidence 458999999999999876544 2355666665
No 58
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=38.16 E-value=97 Score=27.23 Aligned_cols=39 Identities=5% Similarity=0.110 Sum_probs=27.0
Q ss_pred EecCCCCCCCCCHHHHHHHHHHHHHhhcC--CCeEEEEcCCc
Q psy12401 120 EYDSLLDSSNMTVDDWINIASDVFDNYEN--FDGFVILHGTD 159 (255)
Q Consensus 120 e~~~~~dSs~~t~~d~~~La~~I~~~~~~--~dG~VVtHGTD 159 (255)
.+.+....--++++.+.+|.+.+++.-.+ +. +||+.|.+
T Consensus 12 ~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~-vvv~~~~~ 52 (245)
T PF00378_consen 12 TLNRPEKRNALNPEMLDELEEALDEAEADPDVK-VVVISGGG 52 (245)
T ss_dssp EEECGGGTTEBSHHHHHHHHHHHHHHHHSTTES-EEEEEEST
T ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHHhcCCcc-EEEEeecc
Confidence 33332346678999999999999987654 44 67776543
No 59
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=37.99 E-value=2.3e+02 Score=25.30 Aligned_cols=33 Identities=12% Similarity=0.115 Sum_probs=23.6
Q ss_pred CCCCCHHHHHHHHHHHHHhhcC-CCeEEEEcCCc
Q psy12401 127 SSNMTVDDWINIASDVFDNYEN-FDGFVILHGTD 159 (255)
Q Consensus 127 Ss~~t~~d~~~La~~I~~~~~~-~dG~VVtHGTD 159 (255)
.--++.+.|.+|.+.+++.-.+ --.+||+.|+.
T Consensus 23 ~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g 56 (256)
T TIGR03210 23 MNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAG 56 (256)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC
Confidence 3568999999999999876544 22566666765
No 60
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=37.88 E-value=1.7e+02 Score=24.84 Aligned_cols=57 Identities=11% Similarity=0.052 Sum_probs=32.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCCCCC---CCChHHHHHHHHHHHHhC
Q psy12401 148 NFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQISIFQ---PRSDGVDNFIASLILAGN 208 (255)
Q Consensus 148 ~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP~~~---~~sDg~~NL~~Av~~A~~ 208 (255)
.+||+|++..++. ...++.. +...++|||+.++..|... ...|-...-..|......
T Consensus 56 ~vdgiii~~~~~~---~~~~~~~-~~~~~ipvv~i~~~~~~~~~~~V~~d~~~~g~~a~~~l~~ 115 (270)
T cd01545 56 RVDGVILTPPLSD---NPELLDL-LDEAGVPYVRIAPGTPDPDSPCVRIDDRAAAREMTRHLID 115 (270)
T ss_pred CCCEEEEeCCCCC---ccHHHHH-HHhcCCCEEEEecCCCCCCCCeEEeccHHHHHHHHHHHHH
Confidence 4899999876532 1223444 3356789999998765322 234444444444444333
No 61
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=37.74 E-value=1e+02 Score=25.19 Aligned_cols=47 Identities=23% Similarity=0.085 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEcCCc--hHHHHHHHHHhhhcCCCceEEEcC
Q psy12401 132 VDDWINIASDVFDNYENFDGFVILHGTD--TLCYTAAALSFMFENLGKTVIITG 183 (255)
Q Consensus 132 ~~d~~~La~~I~~~~~~~dG~VVtHGTD--TLeeTA~~Lsl~l~~~~kPVVlTG 183 (255)
+++..+|.+.+++..+++|-||+|=||. .--+|.-++.-+. .++|-|
T Consensus 50 ~Dd~~~i~~~l~~~~~~~DliIttGG~g~g~~D~t~~ai~~~g-----~~~~~g 98 (144)
T TIGR00177 50 PDDPEEIREILRKAVDEADVVLTTGGTGVGPRDVTPEALEELG-----EKEIPG 98 (144)
T ss_pred CCCHHHHHHHHHHHHhCCCEEEECCCCCCCCCccHHHHHHHhC-----cEEEee
Confidence 4556778888887776788888775543 2344554554322 455555
No 62
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=37.37 E-value=64 Score=24.74 Aligned_cols=43 Identities=16% Similarity=0.221 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEc
Q psy12401 135 WINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIIT 182 (255)
Q Consensus 135 ~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlT 182 (255)
+.++++.|.+. .-|++.|+.+-...|..+...+....+++.+.
T Consensus 3 i~~~~~~i~~~-----~~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~ 45 (139)
T cd05013 3 LEKAVDLLAKA-----RRIYIFGVGSSGLVAEYLAYKLLRLGKPVVLL 45 (139)
T ss_pred HHHHHHHHHhC-----CEEEEEEcCchHHHHHHHHHHHHHcCCceEEe
Confidence 55566666443 44666788888888888877776666766654
No 63
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=37.16 E-value=1.8e+02 Score=24.79 Aligned_cols=53 Identities=25% Similarity=0.260 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCC
Q psy12401 130 MTVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQIS 187 (255)
Q Consensus 130 ~t~~d~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP 187 (255)
-.++.+.++.+.+.+. .+||+||... ++ +.....+.. +...++|||+.+...+
T Consensus 40 ~~~~~~~~~~~~l~~~--~vdgiii~~~-~~-~~~~~~l~~-~~~~~iPvV~~~~~~~ 92 (275)
T cd06317 40 GDVARQAAQVEDLIAQ--KVDGIILWPT-DG-QAYIPGLRK-AKQAGIPVVITNSNIS 92 (275)
T ss_pred cCHHHHHHHHHHHHHc--CCCEEEEecC-Cc-cccHHHHHH-HHHCCCcEEEeCCCCC
Confidence 3555565554443332 4899999753 33 111223344 2356899999987543
No 64
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=36.26 E-value=2.5e+02 Score=25.09 Aligned_cols=32 Identities=16% Similarity=0.134 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHHHHHHHhhcCC-CeEEEEcCCc
Q psy12401 128 SNMTVDDWINIASDVFDNYENF-DGFVILHGTD 159 (255)
Q Consensus 128 s~~t~~d~~~La~~I~~~~~~~-dG~VVtHGTD 159 (255)
--++.+.+.+|.+.+.+.-.+- -.+||++|..
T Consensus 26 Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g 58 (260)
T PRK07657 26 NALSLALLEELQNILTQINEEANVRVVILTGAG 58 (260)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCC
Confidence 4589999999999999766442 3667777765
No 65
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=36.16 E-value=2.6e+02 Score=24.78 Aligned_cols=40 Identities=13% Similarity=0.120 Sum_probs=26.1
Q ss_pred EecCCCCCCCCCHHHHHHHHHHHHHhhcC-CCeEEEEcCCc
Q psy12401 120 EYDSLLDSSNMTVDDWINIASDVFDNYEN-FDGFVILHGTD 159 (255)
Q Consensus 120 e~~~~~dSs~~t~~d~~~La~~I~~~~~~-~dG~VVtHGTD 159 (255)
.+.+....-.++++.+.+|.+.+++.-.+ --.+||++|..
T Consensus 19 ~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g 59 (259)
T PRK06688 19 TINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAG 59 (259)
T ss_pred EecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC
Confidence 34332234568999999999999876644 22556666654
No 66
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.08 E-value=2.8e+02 Score=23.73 Aligned_cols=54 Identities=9% Similarity=0.126 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHHhhcCCCeEEEEcCC-chHHHHHHHHHhhhcCCCceEEEcCCCCC
Q psy12401 131 TVDDWINIASDVFDNYENFDGFVILHGT-DTLCYTAAALSFMFENLGKTVIITGSQIS 187 (255)
Q Consensus 131 t~~d~~~La~~I~~~~~~~dG~VVtHGT-DTLeeTA~~Lsl~l~~~~kPVVlTGAmrP 187 (255)
+++...++.+.+.+. .+||+||+... +.....+.++..+ ...+.|||+-+...+
T Consensus 40 ~~~~~~~~i~~l~~~--~vdgiIi~~~~~~~~~~~~~~i~~~-~~~~ipvV~i~~~~~ 94 (273)
T cd06292 40 GGVSEADYVEDLLAR--GVRGVVFISSLHADTHADHSHYERL-AERGLPVVLVNGRAP 94 (273)
T ss_pred ChHHHHHHHHHHHHc--CCCEEEEeCCCCCcccchhHHHHHH-HhCCCCEEEEcCCCC
Confidence 444444444433332 48999998532 3333334445543 366899999987543
No 67
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=36.01 E-value=31 Score=28.18 Aligned_cols=25 Identities=40% Similarity=0.610 Sum_probs=15.9
Q ss_pred CCeEEEEc-CCchHHHHHHHHHhhhcCCCceEEEc
Q psy12401 149 FDGFVILH-GTDTLCYTAAALSFMFENLGKTVIIT 182 (255)
Q Consensus 149 ~dG~VVtH-GTDTLeeTA~~Lsl~l~~~~kPVVlT 182 (255)
+| +||+| |.-|+.|.+ ...||.|+.
T Consensus 73 aD-lvIs~aG~~Ti~E~l--------~~g~P~I~i 98 (167)
T PF04101_consen 73 AD-LVISHAGAGTIAEAL--------ALGKPAIVI 98 (167)
T ss_dssp HS-EEEECS-CHHHHHHH--------HCT--EEEE
T ss_pred cC-EEEeCCCccHHHHHH--------HcCCCeecc
Confidence 35 89998 568988853 247898874
No 68
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=36.01 E-value=1.5e+02 Score=26.44 Aligned_cols=59 Identities=17% Similarity=0.150 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEcCCc--hHHHHHHHHHhhhcCCCceEE-EcCCCCCCCCCCChH
Q psy12401 133 DDWINIASDVFDNYENFDGFVILHGTD--TLCYTAAALSFMFENLGKTVI-ITGSQISIFQPRSDG 195 (255)
Q Consensus 133 ~d~~~La~~I~~~~~~~dG~VVtHGTD--TLeeTA~~Lsl~l~~~~kPVV-lTGAmrP~~~~~sDg 195 (255)
++..++++.+.+. ..|+|.|= ||+ |-+.+--++..+=...++||| |-|+-.... +..|+
T Consensus 11 e~~~~ia~~v~~~--gtDaI~VG-GS~gvt~~~~~~~v~~ik~~~~lPvilfp~~~~~i~-~~aD~ 72 (205)
T TIGR01769 11 DEIEKIAKNAKDA--GTDAIMVG-GSLGIVESNLDQTVKKIKKITNLPVILFPGNVNGLS-RYADA 72 (205)
T ss_pred HHHHHHHHHHHhc--CCCEEEEc-CcCCCCHHHHHHHHHHHHhhcCCCEEEECCCccccC-cCCCE
Confidence 5555555444432 36888774 565 667776666663223689998 666655554 45555
No 69
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=35.84 E-value=2.6e+02 Score=25.30 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHHHHHHHhhcCC-CeEEEEcCCch
Q psy12401 128 SNMTVDDWINIASDVFDNYENF-DGFVILHGTDT 160 (255)
Q Consensus 128 s~~t~~d~~~La~~I~~~~~~~-dG~VVtHGTDT 160 (255)
--++.+.|.+|.+.+++.-.+- -.+||+.|.+.
T Consensus 32 Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~ 65 (276)
T PRK05864 32 NSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGR 65 (276)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCC
Confidence 4589999999999998766442 26777778763
No 70
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=35.66 E-value=2.7e+02 Score=24.83 Aligned_cols=40 Identities=13% Similarity=0.116 Sum_probs=27.5
Q ss_pred EEecCCCCCCCCCHHHHHHHHHHHHHhhcC-CCeEEEEcCCc
Q psy12401 119 LEYDSLLDSSNMTVDDWINIASDVFDNYEN-FDGFVILHGTD 159 (255)
Q Consensus 119 ~e~~~~~dSs~~t~~d~~~La~~I~~~~~~-~dG~VVtHGTD 159 (255)
+.+.+.. .--++++.+.+|.+.+.+.-.+ --.+||++|+.
T Consensus 16 itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g 56 (258)
T PRK09076 16 LTLNNPP-ANTWTADSLQALKQLVLELNADKDVYALVITGDG 56 (258)
T ss_pred EEECCCC-cCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC
Confidence 3444332 3678999999999999876544 33677777764
No 71
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=35.62 E-value=2.6e+02 Score=25.58 Aligned_cols=34 Identities=15% Similarity=-0.002 Sum_probs=24.6
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCC-CeEEEEcCCch
Q psy12401 127 SSNMTVDDWINIASDVFDNYENF-DGFVILHGTDT 160 (255)
Q Consensus 127 Ss~~t~~d~~~La~~I~~~~~~~-dG~VVtHGTDT 160 (255)
---++++.+.+|.+.+++.-.+- -.+||+.|...
T Consensus 25 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~ 59 (296)
T PRK08260 25 LNAFTVTMARELIEAFDAADADDAVRAVIVTGAGR 59 (296)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCC
Confidence 35689999999999998765442 35666677653
No 72
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=35.22 E-value=1.3e+02 Score=25.74 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=27.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCCCCCCCChHHHHH
Q psy12401 148 NFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQISIFQPRSDGVDNF 199 (255)
Q Consensus 148 ~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP~~~~~sDg~~NL 199 (255)
++|||||. +++.-+ .+.. +...++|||+.+...|.....+=+..|.
T Consensus 58 ~vdgiii~-~~~~~~----~~~~-l~~~~ipvV~~~~~~~~~~~~~V~~d~~ 103 (268)
T cd06277 58 KVDGIILL-GGISTE----YIKE-IKELGIPFVLVDHYIPNEKADCVLTDNY 103 (268)
T ss_pred CCCEEEEe-CCCChH----HHHH-HhhcCCCEEEEccCCCCCCCCEEEecch
Confidence 48999996 465432 2554 3366899999987655432222334443
No 73
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=35.09 E-value=2.7e+02 Score=24.86 Aligned_cols=32 Identities=13% Similarity=0.179 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHHHHHHhhcCC-CeEEEEcCCc
Q psy12401 128 SNMTVDDWINIASDVFDNYENF-DGFVILHGTD 159 (255)
Q Consensus 128 s~~t~~d~~~La~~I~~~~~~~-dG~VVtHGTD 159 (255)
--++++.+.+|.+.+.+.-.+- -.+||++|..
T Consensus 30 Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g 62 (261)
T PRK08138 30 NALNMEVRQQLAEHFTELSEDPDIRAIVLTGGE 62 (261)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCC
Confidence 4589999999999998765442 2556666754
No 74
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=34.94 E-value=1.7e+02 Score=27.17 Aligned_cols=89 Identities=18% Similarity=0.056 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhhcC---CCeEEEEcC----CchHHHHHHHHHhhhcCCCceEEEcCCCCCCCCCC-ChHHHHHHHHHH
Q psy12401 133 DDWINIASDVFDNYEN---FDGFVILHG----TDTLCYTAAALSFMFENLGKTVIITGSQISIFQPR-SDGVDNFIASLI 204 (255)
Q Consensus 133 ~d~~~La~~I~~~~~~---~dG~VVtHG----TDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP~~~~~-sDg~~NL~~Av~ 204 (255)
+.+.++.+.|++..++ .+||+|+|| |.+ --++.++..+-...+|-.+++=+-.|....+ .--+.|-.-++.
T Consensus 70 ~~~e~i~~~ir~~~E~cD~~~gf~i~~slgGGTGs-G~~~~i~e~l~d~y~~~~~~~~~v~P~~~~~~~~~~yNa~l~l~ 148 (328)
T cd00286 70 EYQEEILDIIRKEAEECDSLQGFFITHSLGGGTGS-GLGPVLAERLKDEYPKRLKITFSILPGPDEGVIVRPYNSILTLH 148 (328)
T ss_pred HHHHHHHHHHHHHHHhCCCccceEEEeecCCCccc-cHHHHHHHHHHHHcCccceeEEEecCCCCCcchhhhhHHHHHHH
Confidence 5677788888876653 689999993 443 2234444443333443345555777876544 222333333333
Q ss_pred HHhCCCCCcEEEEeCCeEe
Q psy12401 205 LAGNYVIPEVTVYFHNKLM 223 (255)
Q Consensus 205 ~A~~~~~~GV~V~f~g~l~ 223 (255)
-... ..-.|++.-|+.++
T Consensus 149 ~L~e-~~d~~i~~dN~~l~ 166 (328)
T cd00286 149 TLTE-HSDCLVVIDNEALF 166 (328)
T ss_pred HHHh-cCCeEEEecchhHH
Confidence 2222 12355555555554
No 75
>cd02649 nuc_hydro_CeIAG nuc_hydro_CeIAG: Nucleoside hydrolases similar to the inosine-adenosine-guanosine-preferring nucleoside hydrolase from Caenorhabditis elegans. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar to the purine-preferring nucleoside hydrolase (IAG-NH) from C. elegans and the salivary purine nucleosidase from Aedes aegypti. C. elegans IAG-NH exhibits a high affinity for the substrate analogue p-nitrophenylriboside (p-NPR).
Probab=34.84 E-value=1.1e+02 Score=28.66 Aligned_cols=59 Identities=10% Similarity=0.090 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCeEEEEcCCchHHHHH----HHHHhhhcCCCceEEEcCCCCCCC
Q psy12401 129 NMTVDDWINIASDVFDNYENFDGFVILHGTDTLCYTA----AALSFMFENLGKTVIITGSQISIF 189 (255)
Q Consensus 129 ~~t~~d~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA----~~Lsl~l~~~~kPVVlTGAmrP~~ 189 (255)
|...+|.++|+-.+...--+.-||..++|--+++.++ ..|++ +.....| |.-|+.+|+.
T Consensus 8 D~g~DD~~Al~~al~~~~~~l~gIt~v~GN~~~~~~~~na~~~l~~-~g~~diP-V~~Ga~~pl~ 70 (306)
T cd02649 8 DCGGDDAWALLMALASPNVEVLAITCVHGNTNVEQVVKNALRVLEA-CGRRDIP-VYRGASKPLL 70 (306)
T ss_pred CCChHHHHHHHHHhcCCCceEEEEEEccCCcCHHHHHHHHHHHHHH-hCCCCCC-EecCCCccCC
Confidence 4567899998876653211467999999988887754 34444 2234567 6788888754
No 76
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=34.72 E-value=2.8e+02 Score=24.75 Aligned_cols=32 Identities=13% Similarity=-0.031 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHHHHHHHhhcC-CCeEEEEcCCc
Q psy12401 128 SNMTVDDWINIASDVFDNYEN-FDGFVILHGTD 159 (255)
Q Consensus 128 s~~t~~d~~~La~~I~~~~~~-~dG~VVtHGTD 159 (255)
--++.+.+.+|.+.+.+.-.+ --.+||+.|+.
T Consensus 25 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g 57 (260)
T PRK05980 25 NALNYALIDRLLARLDAIEVDESVRAVILTGAG 57 (260)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCC
Confidence 458999999999999876544 22556666654
No 77
>PRK13363 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=34.69 E-value=1.4e+02 Score=28.53 Aligned_cols=59 Identities=14% Similarity=-0.044 Sum_probs=37.3
Q ss_pred HHHHHHhhhcCCCceE--EEcCCCCCCCCCCChHHHHHHHHHHHHhCCC--CCcEEEEeCCeE
Q psy12401 164 TAAALSFMFENLGKTV--IITGSQISIFQPRSDGVDNFIASLILAGNYV--IPEVTVYFHNKL 222 (255)
Q Consensus 164 TA~~Lsl~l~~~~kPV--VlTGAmrP~~~~~sDg~~NL~~Av~~A~~~~--~~GV~V~f~g~l 222 (255)
..+.|-+++.+.+.|| |..+...|+..++..--..|-.||.-+.... ..+|+|+-.|-+
T Consensus 188 ~~~pl~~l~p~~dipVVpIsl~~~~~P~~~s~~~~~~lG~aL~~~i~~~~~d~rVlIIaSGdL 250 (335)
T PRK13363 188 FGFVHRQLMKDNVLPTVPVLVNTFYPPNQPTPRRCIALGRSLRRAIRSWPEDARVAVIASGGL 250 (335)
T ss_pred chhhHHHhcCCCCCcEEEEEeccCCCcCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEEeCcc
Confidence 3444555555566777 4555656665567778889989998875532 356776655533
No 78
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=34.37 E-value=2.7e+02 Score=25.05 Aligned_cols=33 Identities=9% Similarity=0.103 Sum_probs=25.4
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCC-CeEEEEcCCc
Q psy12401 127 SSNMTVDDWINIASDVFDNYENF-DGFVILHGTD 159 (255)
Q Consensus 127 Ss~~t~~d~~~La~~I~~~~~~~-dG~VVtHGTD 159 (255)
.-.++++.|.+|.+.+.+.-.+- -.+||+.|+.
T Consensus 27 ~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g 60 (265)
T PRK05674 27 NNAFNAQMIRELILALDQVQSDASLRFLLLRGRG 60 (265)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC
Confidence 45689999999999998765543 3777778876
No 79
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=34.33 E-value=67 Score=28.03 Aligned_cols=88 Identities=20% Similarity=0.265 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhh---cCCCeEEEEcCCc--hHHHHHHHHHhhhc-CCCceEEEcCCCCCCCCCCChHHHHHHHHHHHH
Q psy12401 133 DDWINIASDVFDNY---ENFDGFVILHGTD--TLCYTAAALSFMFE-NLGKTVIITGSQISIFQPRSDGVDNFIASLILA 206 (255)
Q Consensus 133 ~d~~~La~~I~~~~---~~~dG~VVtHGTD--TLeeTA~~Lsl~l~-~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av~~A 206 (255)
..+..+.+.|++.+ +.+|+|+|+||.. |=.=.+..|.-++. ..++-.|++=+..|... ++..-.+.|+...
T Consensus 105 ~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~~~~~~~ilP~~~---e~~~~~~Na~~~l 181 (216)
T PF00091_consen 105 EALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKKPIISFSILPFSS---EGVVEPYNALLSL 181 (216)
T ss_dssp HHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE-CGG---GSHHHHHHHHHHH
T ss_pred ccccccccccchhhccccccccceecccccceeccccccccchhhhccccccceeecccccccc---ccccccceehhHH
Confidence 46677778888877 5589999999543 32222323322233 33344556666678732 5554444444332
Q ss_pred hCC--CCCcEEEEeCCeEe
Q psy12401 207 GNY--VIPEVTVYFHNKLM 223 (255)
Q Consensus 207 ~~~--~~~GV~V~f~g~l~ 223 (255)
..- ..-.|+++-|++++
T Consensus 182 ~~l~~~~d~~i~~dN~~l~ 200 (216)
T PF00091_consen 182 SELQEYADSVILFDNDALY 200 (216)
T ss_dssp HHHHHTSSEEEEEEHHHHH
T ss_pred HHHHHhCCEEEEEcHHHHH
Confidence 221 12355555555544
No 80
>PLN02452 phosphoserine transaminase
Probab=34.30 E-value=66 Score=30.77 Aligned_cols=50 Identities=18% Similarity=0.349 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhhcC---C---CeEEEEcCCchHHHHHHHHHhhhcCCCc-eEEEcCC
Q psy12401 134 DWINIASDVFDNYEN---F---DGFVILHGTDTLCYTAAALSFMFENLGK-TVIITGS 184 (255)
Q Consensus 134 d~~~La~~I~~~~~~---~---dG~VVtHGTDTLeeTA~~Lsl~l~~~~k-PVVlTGA 184 (255)
+..+|.+.+++.+.+ . --+|+++|..|+..-|..++|+ ...+| =+|.||+
T Consensus 49 ~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea~~~nl~-~~~~~~l~~~~G~ 105 (365)
T PLN02452 49 EFLSIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAAIPLNLC-KPGDKADFVVTGS 105 (365)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHHHHHhcC-CCCCeEEEEECCH
Confidence 344555555444432 1 2699999999999999999984 33233 3455664
No 81
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=34.16 E-value=48 Score=28.59 Aligned_cols=36 Identities=14% Similarity=0.405 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCC
Q psy12401 148 NFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQIS 187 (255)
Q Consensus 148 ~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP 187 (255)
.+||||+.-++.. ...++.. +...++|||+.+...+
T Consensus 55 ~vdgii~~~~~~~---~~~~~~~-~~~~~ipvV~i~~~~~ 90 (269)
T cd06281 55 RMDGIIIAPGDER---DPELVDA-LASLDLPIVLLDRDMG 90 (269)
T ss_pred CCCEEEEecCCCC---cHHHHHH-HHhCCCCEEEEecccC
Confidence 4899999865422 1223344 3356799999997765
No 82
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=34.04 E-value=1.7e+02 Score=24.88 Aligned_cols=51 Identities=20% Similarity=0.280 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCC
Q psy12401 130 MTVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQIS 187 (255)
Q Consensus 130 ~t~~d~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP 187 (255)
-.++...+..+.+.+. ++||+||+ +++... ..+.. +...++|||+.+...+
T Consensus 39 ~~~~~~~~~~~~l~~~--~vdgiii~-~~~~~~---~~~~~-l~~~~iPvv~~~~~~~ 89 (268)
T cd06273 39 YDLDREYAQARKLLER--GVDGLALI-GLDHSP---ALLDL-LARRGVPYVATWNYSP 89 (268)
T ss_pred CCHHHHHHHHHHHHhc--CCCEEEEe-CCCCCH---HHHHH-HHhCCCCEEEEcCCCC
Confidence 3455554444433322 48999997 555432 22333 3456899999886543
No 83
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=33.99 E-value=77 Score=30.61 Aligned_cols=51 Identities=16% Similarity=0.255 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhhcC------CCeEEEEcCCchHHHHHHHHHhhhcCCCce--EEEcCC
Q psy12401 133 DDWINIASDVFDNYEN------FDGFVILHGTDTLCYTAAALSFMFENLGKT--VIITGS 184 (255)
Q Consensus 133 ~d~~~La~~I~~~~~~------~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kP--VVlTGA 184 (255)
.+..+|.+.+++.+++ -.-|++++|..|+...|..+.| +...+|. +|.||.
T Consensus 45 ~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~~~Nl-l~~g~~~~~~~~tG~ 103 (364)
T PRK12462 45 SWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIPMNF-SRPGAAAPEYVTTGY 103 (364)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHHHHHc-CCCCCcEEEEEeCCH
Confidence 3344555545444432 1268999999999999999998 4444544 578883
No 84
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=33.78 E-value=3e+02 Score=24.63 Aligned_cols=32 Identities=19% Similarity=0.069 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHHHHHHhhcC-CCeEEEEcCCc
Q psy12401 128 SNMTVDDWINIASDVFDNYEN-FDGFVILHGTD 159 (255)
Q Consensus 128 s~~t~~d~~~La~~I~~~~~~-~dG~VVtHGTD 159 (255)
-.++++.+.+|.+.+++.-.+ --.+||+.|+.
T Consensus 30 Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g 62 (262)
T PRK06144 30 NAMTWAMYEGLAEICEAIAADPSIRAVVLRGAG 62 (262)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC
Confidence 457899999999999876544 23566666654
No 85
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=33.43 E-value=2.6e+02 Score=24.90 Aligned_cols=42 Identities=12% Similarity=0.135 Sum_probs=29.8
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHHHHHhhcC-CCeEEEEcCCc
Q psy12401 118 VLEYDSLLDSSNMTVDDWINIASDVFDNYEN-FDGFVILHGTD 159 (255)
Q Consensus 118 v~e~~~~~dSs~~t~~d~~~La~~I~~~~~~-~dG~VVtHGTD 159 (255)
++.+....-.--++.+.|.+|.+.+.+.-.+ --.+||+.|.+
T Consensus 17 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g 59 (257)
T COG1024 17 VITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAG 59 (257)
T ss_pred EEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC
Confidence 3444432223479999999999999987755 45777777887
No 86
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=33.35 E-value=2.6e+02 Score=23.57 Aligned_cols=35 Identities=17% Similarity=0.316 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCC
Q psy12401 148 NFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQIS 187 (255)
Q Consensus 148 ~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP 187 (255)
++||||+......-+ .+..+ ...++|||+.+...+
T Consensus 55 ~~dgiii~~~~~~~~----~l~~~-~~~~ipvV~~~~~~~ 89 (267)
T cd06283 55 QVDGLIVNPTGNNKE----LYQRL-AKNGKPVVLVDRKIP 89 (267)
T ss_pred CcCEEEEeCCCCChH----HHHHH-hcCCCCEEEEcCCCC
Confidence 489999976543322 24443 356899999987654
No 87
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=32.97 E-value=3.2e+02 Score=24.61 Aligned_cols=32 Identities=13% Similarity=0.017 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHHHHHHHhhcCC-CeEEEEcCCc
Q psy12401 128 SNMTVDDWINIASDVFDNYENF-DGFVILHGTD 159 (255)
Q Consensus 128 s~~t~~d~~~La~~I~~~~~~~-dG~VVtHGTD 159 (255)
--++++.+.+|.+.+.+.-.+- -.+||+.|..
T Consensus 34 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g 66 (268)
T PRK07327 34 NAADARMHRELADIWRDVDRDPDVRVVLIRGEG 66 (268)
T ss_pred CCCCHHHHHHHHHHHHHhhhCCCceEEEEECCC
Confidence 3489999999999998765442 2666666765
No 88
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=32.90 E-value=3.2e+02 Score=24.31 Aligned_cols=33 Identities=12% Similarity=0.003 Sum_probs=23.9
Q ss_pred CCCCCHHHHHHHHHHHHHhhcC-CCeEEEEcCCc
Q psy12401 127 SSNMTVDDWINIASDVFDNYEN-FDGFVILHGTD 159 (255)
Q Consensus 127 Ss~~t~~d~~~La~~I~~~~~~-~dG~VVtHGTD 159 (255)
--.++.+.+.+|.+.+++.-.+ --.+||+.|.+
T Consensus 26 ~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g 59 (249)
T PRK07110 26 KNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYP 59 (249)
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC
Confidence 4568999999999999987654 22555555765
No 89
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=32.84 E-value=1.6e+02 Score=24.99 Aligned_cols=50 Identities=8% Similarity=0.088 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCC
Q psy12401 129 NMTVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQ 185 (255)
Q Consensus 129 ~~t~~d~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAm 185 (255)
+..++...++.+.+.+ .++||+||+--..+ ..++.. +...++|||+.+..
T Consensus 38 ~~~~~~~~~~~~~l~~--~~vdgiii~~~~~~----~~~~~~-~~~~~ipvv~~~~~ 87 (268)
T cd01575 38 GYSPEREEELLRTLLS--RRPAGLILTGLEHT----ERTRQL-LRAAGIPVVEIMDL 87 (268)
T ss_pred CCCchhHHHHHHHHHH--cCCCEEEEeCCCCC----HHHHHH-HHhcCCCEEEEecC
Confidence 3445444444444322 24899999854434 223444 23567899988754
No 90
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=32.61 E-value=3.2e+02 Score=24.43 Aligned_cols=32 Identities=6% Similarity=-0.007 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHHHHHHHhhcC-CCeEEEEcCCc
Q psy12401 128 SNMTVDDWINIASDVFDNYEN-FDGFVILHGTD 159 (255)
Q Consensus 128 s~~t~~d~~~La~~I~~~~~~-~dG~VVtHGTD 159 (255)
--++++.+.+|.+.+++.-.+ --.+||++|+.
T Consensus 29 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g 61 (256)
T PRK06143 29 NILGTPVILALTQALRWLAADPDVRVLVLRGAG 61 (256)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence 448999999999999887644 23667777764
No 91
>KOG2882|consensus
Probab=32.59 E-value=60 Score=30.86 Aligned_cols=34 Identities=29% Similarity=0.482 Sum_probs=28.0
Q ss_pred cCCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEc
Q psy12401 147 ENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIIT 182 (255)
Q Consensus 147 ~~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlT 182 (255)
-++|||+.+ |-+-++.++-+|+++. ...|-|+|+
T Consensus 27 fDcDGVlW~-g~~~ipGs~e~l~~L~-~~gK~i~fv 60 (306)
T KOG2882|consen 27 FDCDGVLWL-GEKPIPGSPEALNLLK-SLGKQIIFV 60 (306)
T ss_pred EcCCcceee-cCCCCCChHHHHHHHH-HcCCcEEEE
Confidence 368999999 9999999999999955 566776654
No 92
>PTZ00387 epsilon tubulin; Provisional
Probab=32.04 E-value=1.3e+02 Score=29.92 Aligned_cols=90 Identities=14% Similarity=0.053 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHHHHhhcC---CCeEEEEc----CCchHHHHHHHHHhhhcCCCceEEEcCCCCCCCCCCChH---HHHH
Q psy12401 130 MTVDDWINIASDVFDNYEN---FDGFVILH----GTDTLCYTAAALSFMFENLGKTVIITGSQISIFQPRSDG---VDNF 199 (255)
Q Consensus 130 ~t~~d~~~La~~I~~~~~~---~dG~VVtH----GTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP~~~~~sDg---~~NL 199 (255)
...+.+.++.+.|++.+++ .+||.|+| ||.+ =..+++|..+-...+|.++++=+-.|.. ..|- |-|-
T Consensus 109 ~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGS-Glgs~lle~l~d~y~~~~~~~~~V~P~~--~~~~vv~pYN~ 185 (465)
T PTZ00387 109 YGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGS-GLGTRILGMLEDEFPHVFRFCPVVFPSA--VDDVITSPYNS 185 (465)
T ss_pred ccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcch-hHHHHHHHHHHHhcccCceeeeEecCCC--CCcceeccchh
Confidence 3477788888888888764 68999999 4443 2345555554445678888888888853 3442 3455
Q ss_pred HHHHHHHhCCCCCcEEEEeCCeEe
Q psy12401 200 IASLILAGNYVIPEVTVYFHNKLM 223 (255)
Q Consensus 200 ~~Av~~A~~~~~~GV~V~f~g~l~ 223 (255)
.-++..... ..-.|+++-|+.++
T Consensus 186 ~lsl~~l~e-~~d~~i~~dN~aL~ 208 (465)
T PTZ00387 186 FFALRELIE-HADCVLPLDNDALA 208 (465)
T ss_pred HHHHHHHHh-hCCeEEEeehHHHH
Confidence 444443332 23466666666554
No 93
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=31.96 E-value=3.5e+02 Score=24.15 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=27.9
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHHHHHhhcC-C-CeEEEEcCCc
Q psy12401 118 VLEYDSLLDSSNMTVDDWINIASDVFDNYEN-F-DGFVILHGTD 159 (255)
Q Consensus 118 v~e~~~~~dSs~~t~~d~~~La~~I~~~~~~-~-dG~VVtHGTD 159 (255)
++.+.+...--.++++.+.+|.+.+.+.-.+ - -.+||++|++
T Consensus 16 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g 59 (266)
T PRK05981 16 ILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAG 59 (266)
T ss_pred EEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC
Confidence 3344432223558899999999999876543 2 3677778886
No 94
>cd02650 nuc_hydro_CaPnhB NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB). Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=31.60 E-value=1e+02 Score=28.39 Aligned_cols=60 Identities=15% Similarity=0.203 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCeEEEEcCCchHHHHHH----HHHhhhcCCCceEEEcCCCCCCCC
Q psy12401 129 NMTVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAA----ALSFMFENLGKTVIITGSQISIFQ 190 (255)
Q Consensus 129 ~~t~~d~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~----~Lsl~l~~~~kPVVlTGAmrP~~~ 190 (255)
|...+|..+|+-.+...--+.-||..++|.-.++.++. +|.+ +.....| |.-|+.+|+..
T Consensus 7 D~g~DD~~AL~~al~~p~~~v~gIt~~~Gn~~~~~~~~na~~~l~~-~g~~diP-V~~G~~~pl~~ 70 (304)
T cd02650 7 DPGIDDAMALAYALAHPDVDLIGVTTVYGNVTIETATRNALALLEL-FGRPDVP-VAEGAAKPLTR 70 (304)
T ss_pred CCCHHHHHHHHHHhcCCCCEEEEEEEccCCcCHHHHHHHHHHHHHH-hCCCCCC-EEcCCCCCCCC
Confidence 34689999998777532113569999999888776653 3333 2224577 77899988754
No 95
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=31.46 E-value=1.8e+02 Score=28.61 Aligned_cols=92 Identities=9% Similarity=0.116 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHHHHHhhc---CCCeEEEEcCCc--hH-HHHHHHHHhhhcCCCceEEEcCCCCCCCCCCChHHHHHHHHH
Q psy12401 130 MTVDDWINIASDVFDNYE---NFDGFVILHGTD--TL-CYTAAALSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASL 203 (255)
Q Consensus 130 ~t~~d~~~La~~I~~~~~---~~dG~VVtHGTD--TL-eeTA~~Lsl~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av 203 (255)
..++-+.++.+.|++.++ ..+||+|+|+.. |= --.+++|..+-...++..+++=+-.|.. ..|...--+.++
T Consensus 104 ~g~~~~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y~~~~~~~~~v~P~~--~~~~~v~~yN~~ 181 (446)
T cd02189 104 HGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPESLLLNIVVWPYT--TGEVIVQNYNTV 181 (446)
T ss_pred cchhhHHHHHHHHHHHHHhCCCccceEEEecCCCCcchHHHHHHHHHHHHhcCccceeeeeccCCC--CCcchhhhhhHH
Confidence 356667777777777664 378999999443 21 3345555554455677778888888843 345555334444
Q ss_pred HHHhCC--CCCcEEEEeCCeEe
Q psy12401 204 ILAGNY--VIPEVTVYFHNKLM 223 (255)
Q Consensus 204 ~~A~~~--~~~GV~V~f~g~l~ 223 (255)
..-..- ..-+|+++-|+.++
T Consensus 182 lsl~~l~e~~d~~~~~dN~al~ 203 (446)
T cd02189 182 LTLAHLYESSDAIILLENDDIH 203 (446)
T ss_pred hhHHHHHhhCCeEEEecHHHHH
Confidence 332221 22466666666443
No 96
>PRK10768 ribonucleoside hydrolase RihC; Provisional
Probab=31.42 E-value=1.1e+02 Score=28.39 Aligned_cols=58 Identities=21% Similarity=0.312 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCeEEEEcCCchHHHHHH----HHHhhhcCCCceEEEcCCCCCCC
Q psy12401 129 NMTVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAA----ALSFMFENLGKTVIITGSQISIF 189 (255)
Q Consensus 129 ~~t~~d~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~----~Lsl~l~~~~kPVVlTGAmrP~~ 189 (255)
|...+|.++|+-.+..---+.-||.+++|-..++.++. +|.+ + +...| |.-|+.+|+.
T Consensus 10 D~g~DDa~Al~~al~~p~~~v~git~v~GN~~~~~~~~na~~~l~~-~-g~dIP-V~~Ga~~pl~ 71 (304)
T PRK10768 10 DPGIDDAVAIAAALFAPELDLKLITTVAGNVSVEKTTRNALKLLHF-F-NSDVP-VAQGAAKPLV 71 (304)
T ss_pred CCCHHHHHHHHHHhcCCCceEEEEEecCCcccHHHHHHHHHHHHHH-h-CCCCe-EEeCCccccC
Confidence 45689999998766432114679999999988876544 4554 3 35678 5678888863
No 97
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=31.41 E-value=2.5e+02 Score=24.32 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCC
Q psy12401 148 NFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQIS 187 (255)
Q Consensus 148 ~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP 187 (255)
++||+||. +.|+ +..-..+.. +....+|||+.+...+
T Consensus 54 ~~dgiii~-~~~~-~~~~~~~~~-~~~~~iPvV~~~~~~~ 90 (289)
T cd01540 54 GAKGFVIC-VPDV-KLGPAIVAK-AKAYNMKVVAVDDRLV 90 (289)
T ss_pred CCCEEEEc-cCch-hhhHHHHHH-HHhCCCeEEEecCCCc
Confidence 48999996 4554 222233454 3367899999987653
No 98
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=31.14 E-value=3.9e+02 Score=23.90 Aligned_cols=55 Identities=16% Similarity=0.147 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCC
Q psy12401 128 SNMTVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQIS 187 (255)
Q Consensus 128 s~~t~~d~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP 187 (255)
++..++...++.+.+.+. .+|||||. +.|+-. ....|..+. ..+.|||+-+...+
T Consensus 36 ~~~~~~~q~~~i~~l~~~--~vDgIIi~-~~~~~~-~~~~l~~~~-~~~iPvV~~d~~~~ 90 (302)
T TIGR02634 36 ANGNEAKQISQIENLIAR--GVDVLVII-PQNGQV-LSNAVQEAK-DEGIKVVAYDRLIN 90 (302)
T ss_pred CCCCHHHHHHHHHHHHHc--CCCEEEEe-CCChhH-HHHHHHHHH-HCCCeEEEecCcCC
Confidence 344555555444333222 48999997 555422 223444433 56789999987643
No 99
>PF01156 IU_nuc_hydro: Inosine-uridine preferring nucleoside hydrolase; InterPro: IPR001910 Inosine-uridine preferring nucleoside hydrolase (3.2.2.1 from EC) (IU-nucleoside hydrolase or IUNH) is an enzyme first identified in protozoan [] that catalyses the hydrolysis of all of the commonly occuring purine and pyrimidine nucleosides into ribose and the associated base, but has a preference for inosine and uridine as substrates. This enzyme is important for these parasitic organisms, which are deficient in de novo synthesis of purines, to salvage the host purine nucleosides. IUNH from Crithidia fasciculata has been sequenced and characterised, it is an homotetrameric enzyme of subunits of 34 Kd. An histidine has been shown to be important for the catalytic mechanism, it acts as a proton donor to activate the hypoxanthine leaving group. A highly conserved region located in the N-terminal extremity contains four conserved aspartates that have been shown [] to be located in the active site cavity. IUNH is evolutionary related to a number of uncharacterised proteins from various biological sources. This entry represents the structural domain of IUNH.; PDB: 1EZR_D 2MAS_B 1MAS_A 3MKM_C 3MKN_C 2C40_A 3T8J_A 2FF2_B 1KIE_A 2FF1_A ....
Probab=31.01 E-value=70 Score=29.27 Aligned_cols=59 Identities=15% Similarity=0.131 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhhcC---C-CceEEEcCCCCCC
Q psy12401 129 NMTVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFEN---L-GKTVIITGSQISI 188 (255)
Q Consensus 129 ~~t~~d~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l~~---~-~kPVVlTGAmrP~ 188 (255)
|+..+|..+|+-.+..---+..||+.++|--.++.++....-+|.- . ..||.. |+.+|+
T Consensus 9 D~g~DD~~Al~~~l~~~~i~i~gIt~~~Gn~~~~~~~~n~~~~l~~~g~~~~iPV~~-G~~~pl 71 (312)
T PF01156_consen 9 DPGIDDALALALALASPEIEILGITTVFGNVSVEQAARNALRLLELAGGRDDIPVYK-GADRPL 71 (312)
T ss_dssp --SHHHHHHHHHHHHHTTEEEEEEEE-SSSS-HHHHHHHHHHHHHHTTTCSTS-EEE-EESS-S
T ss_pred CCChhHHHHHHHHHhCCCcEEEEEEEecCCcchHHHHHHHHHHHHHhcCCCccceee-cchhhh
Confidence 4568999999888754212478999999955666555433322322 2 477655 999885
No 100
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=30.58 E-value=1e+02 Score=30.23 Aligned_cols=87 Identities=15% Similarity=0.119 Sum_probs=53.7
Q ss_pred hhhhhccccCccCCCCcEEEEecCCcceeeeCCCCceecC------cchHHHHHhcCCCCCccccccCCCCccccccccc
Q psy12401 34 SAEKFRFKNQTESLESRVLVIYTGGTIGMIINNDGVLAPQ------SNKFKENIRQNPLMHDVDYLRNRPDKSEYLALPG 107 (255)
Q Consensus 34 ~~~~~~~~~~~~~~~~rIlVI~TGGTIa~~~~~~g~l~p~------~~~~~~~L~~~p~l~~~~~~~~~~~~~~~~~lp~ 107 (255)
-.-++-++.-....++||.||.||--|-.- +..+.|. ...+..+|++.-
T Consensus 162 llas~Gi~~V~V~rkprV~IisTGdELv~~---~~~l~~gqI~dsN~~~l~a~l~~~G---------------------- 216 (404)
T COG0303 162 LLASLGIAEVKVYRKPRVAIISTGDELVEP---GQPLEPGQIYDSNSYMLAALLERAG---------------------- 216 (404)
T ss_pred HHHhCCCceEEEecCCEEEEEecCccccCC---CCCCCCCeEEecCHHHHHHHHHHcC----------------------
Confidence 345566677777888999999999777542 1112221 111333333210
Q ss_pred cccCceeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcCCCeEEEEcCCch
Q psy12401 108 LKHNKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFDNYENFDGFVILHGTDT 160 (255)
Q Consensus 108 l~~~~~v~~~v~e~~~~~dSs~~t~~d~~~La~~I~~~~~~~dG~VVtHGTDT 160 (255)
.+++ ...+.++|-.+|.+.|++..+++|=||++=|+.-
T Consensus 217 --------~e~~-------~~giv~Dd~~~l~~~i~~a~~~~DviItsGG~Sv 254 (404)
T COG0303 217 --------GEVV-------DLGIVPDDPEALREAIEKALSEADVIITSGGVSV 254 (404)
T ss_pred --------Ccee-------eccccCCCHHHHHHHHHHhhhcCCEEEEeCCccC
Confidence 0111 2234577888999999999988998888877643
No 101
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=30.35 E-value=2.8e+02 Score=22.89 Aligned_cols=64 Identities=13% Similarity=-0.025 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhhcC-----------------CCceEEEc-CCCCCCCCCCChH
Q psy12401 134 DWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFEN-----------------LGKTVIIT-GSQISIFQPRSDG 195 (255)
Q Consensus 134 d~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l~~-----------------~~kPVVlT-GAmrP~~~~~sDg 195 (255)
.+.-+++.+++.+..-..++|....+ +.|..||-+||. ...||+|| ..+.|. ...|-
T Consensus 14 ~~~~~c~L~~ka~~~g~rv~I~~~d~---~~a~~lD~~LW~~~~~sFlPH~~~~~~~~~~~PV~l~~~~~~~~--~~~~~ 88 (142)
T PRK05728 14 LEALLCELAEKALRAGWRVLVQCEDE---EQAEALDEALWTFRDESFLPHGLAGEGPAAGQPVLLTWPGKRNA--NHRDL 88 (142)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCH---HHHHHHHHHhcCCCCCcCCCCCcCCCCCCCCCCEEEEcCCCCCC--CCCcE
Confidence 45557888888887666666654443 468888988884 24699998 555554 34566
Q ss_pred HHHHHHH
Q psy12401 196 VDNFIAS 202 (255)
Q Consensus 196 ~~NL~~A 202 (255)
.-||..+
T Consensus 89 LinL~~~ 95 (142)
T PRK05728 89 LINLDGA 95 (142)
T ss_pred EEECCCC
Confidence 7777544
No 102
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=30.23 E-value=40 Score=31.25 Aligned_cols=41 Identities=27% Similarity=0.374 Sum_probs=31.8
Q ss_pred cCCCeEEEEcCCchHHHHHHHHHhhhcCCCceEE-EcCCCCCCC
Q psy12401 147 ENFDGFVILHGTDTLCYTAAALSFMFENLGKTVI-ITGSQISIF 189 (255)
Q Consensus 147 ~~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVV-lTGAmrP~~ 189 (255)
-|.||+|+ +|...+.+..-+|.. |....||+| +|-+-++..
T Consensus 13 ~DlDGvl~-~G~~~ipga~e~l~~-L~~~g~~~iflTNn~~~s~ 54 (269)
T COG0647 13 FDLDGVLY-RGNEAIPGAAEALKR-LKAAGKPVIFLTNNSTRSR 54 (269)
T ss_pred EcCcCceE-eCCccCchHHHHHHH-HHHcCCeEEEEeCCCCCCH
Confidence 35788877 899999999999999 556778877 566555444
No 103
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=29.98 E-value=3.7e+02 Score=23.83 Aligned_cols=33 Identities=9% Similarity=0.068 Sum_probs=24.7
Q ss_pred CCCCCHHHHHHHHHHHHHhhcC-CCeEEEEcCCc
Q psy12401 127 SSNMTVDDWINIASDVFDNYEN-FDGFVILHGTD 159 (255)
Q Consensus 127 Ss~~t~~d~~~La~~I~~~~~~-~dG~VVtHGTD 159 (255)
--.++++.+.+|.+.+.+.-.+ --.+||+.|+.
T Consensus 24 ~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g 57 (249)
T PRK05870 24 RNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAG 57 (249)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC
Confidence 3558999999999999876544 23667777876
No 104
>PRK12342 hypothetical protein; Provisional
Probab=29.58 E-value=63 Score=29.68 Aligned_cols=55 Identities=20% Similarity=0.207 Sum_probs=36.7
Q ss_pred HHhhc-CCC-eEEEE----cCCchHHHHHHHHHhhhcCCCceEEEcCCCCCCCCCCChHHHHHHHHHH
Q psy12401 143 FDNYE-NFD-GFVIL----HGTDTLCYTAAALSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLI 204 (255)
Q Consensus 143 ~~~~~-~~d-G~VVt----HGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av~ 204 (255)
++.+. .+| ++.|. -|.||++ ||+.|+-.+.....-+||||.| +.||..-...+..
T Consensus 71 r~alamGaD~avli~d~~~~g~D~~a-ta~~La~~i~~~~~DLVl~G~~------s~D~~tgqvg~~l 131 (254)
T PRK12342 71 KDVLSRGPHSLYLVQDAQLEHALPLD-TAKALAAAIEKIGFDLLLFGEG------SGDLYAQQVGLLL 131 (254)
T ss_pred HHHHHcCCCEEEEEecCccCCCCHHH-HHHHHHHHHHHhCCCEEEEcCC------cccCCCCCHHHHH
Confidence 34443 354 66665 4889987 8999998887766679999944 5566444444443
No 105
>PLN02888 enoyl-CoA hydratase
Probab=29.37 E-value=3.8e+02 Score=24.16 Aligned_cols=32 Identities=19% Similarity=0.172 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHHHHHHhhcCC-CeEEEEcCCc
Q psy12401 128 SNMTVDDWINIASDVFDNYENF-DGFVILHGTD 159 (255)
Q Consensus 128 s~~t~~d~~~La~~I~~~~~~~-dG~VVtHGTD 159 (255)
-.++++.+.+|.+.+.+.-.+- -.+||+.|..
T Consensus 32 Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g 64 (265)
T PLN02888 32 NALTRPMMVELAAAFKRLDEDDSVKVIILTGSG 64 (265)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC
Confidence 4589999999999998776442 2566667875
No 106
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=29.35 E-value=1.4e+02 Score=27.10 Aligned_cols=44 Identities=18% Similarity=0.300 Sum_probs=29.0
Q ss_pred CCeEEEEcCCc--hHHHHHHHHHhhhcCCCceEE-EcCCCCCCCCCCChH
Q psy12401 149 FDGFVILHGTD--TLCYTAAALSFMFENLGKTVI-ITGSQISIFQPRSDG 195 (255)
Q Consensus 149 ~dG~VVtHGTD--TLeeTA~~Lsl~l~~~~kPVV-lTGAmrP~~~~~sDg 195 (255)
.|+|+| =||| |-+.+--+++. +.....||| |-|+-.... +.+|+
T Consensus 28 tdai~v-GGS~~vt~~~~~~~v~~-ik~~~lPvilfp~~~~~i~-~~aDa 74 (223)
T TIGR01768 28 TDAILI-GGSQGVTYEKTDTLIEA-LRRYGLPIILFPSNPTNVS-RDADA 74 (223)
T ss_pred CCEEEE-cCCCcccHHHHHHHHHH-HhccCCCEEEeCCCccccC-cCCCE
Confidence 677755 5888 44666656665 456779999 666666555 45665
No 107
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=28.93 E-value=1.1e+02 Score=25.81 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=22.1
Q ss_pred HHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhh
Q psy12401 137 NIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMF 172 (255)
Q Consensus 137 ~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l 172 (255)
.+.+.+.+.... -.||+.|-+|+...|+.+|..++
T Consensus 140 ~i~~~~~~~~~~-g~Iil~Hd~~~~~~t~~~l~~~i 174 (191)
T TIGR02764 140 SIVDRVVKNTKP-GDIILLHASDSAKQTVKALPTII 174 (191)
T ss_pred HHHHHHHhcCCC-CCEEEEeCCCCcHhHHHHHHHHH
Confidence 344444444432 34999997777777777776554
No 108
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=28.72 E-value=3.4e+02 Score=24.28 Aligned_cols=40 Identities=8% Similarity=0.203 Sum_probs=26.9
Q ss_pred EEecCCCCCCCCCHHHHHHHHHHHHHhhcCCC-eEEEEcCCc
Q psy12401 119 LEYDSLLDSSNMTVDDWINIASDVFDNYENFD-GFVILHGTD 159 (255)
Q Consensus 119 ~e~~~~~dSs~~t~~d~~~La~~I~~~~~~~d-G~VVtHGTD 159 (255)
+.+.+. +.--++++.+.+|.+.+++.-.+-+ .+||+.|++
T Consensus 16 itlnrp-~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g 56 (261)
T PRK03580 16 ITLDRP-KANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAG 56 (261)
T ss_pred EEECCc-cccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCC
Confidence 344443 2456899999999999987654422 566666765
No 109
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=27.84 E-value=2.6e+02 Score=24.84 Aligned_cols=52 Identities=13% Similarity=0.137 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHHHhhc-CCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCC
Q psy12401 130 MTVDDWINIASDVFDNYE-NFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQIS 187 (255)
Q Consensus 130 ~t~~d~~~La~~I~~~~~-~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP 187 (255)
..++...+ .++..+. ++||||+. +.+. .....++.. +....+|||+.+...+
T Consensus 40 ~d~~~~~~---~i~~~~~~~~DgiIi~-~~~~-~~~~~~~~~-~~~~~iPvV~v~~~~~ 92 (298)
T cd06302 40 ADAAGQVQ---IIEDLIAQGVDAIAVV-PNDP-DALEPVLKK-AREAGIKVVTHDSDVQ 92 (298)
T ss_pred CCHHHHHH---HHHHHHhcCCCEEEEe-cCCH-HHHHHHHHH-HHHCCCeEEEEcCCCC
Confidence 34544443 3433333 48999997 5443 222233343 2366889999987543
No 110
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=27.62 E-value=4.3e+02 Score=23.85 Aligned_cols=34 Identities=12% Similarity=0.097 Sum_probs=24.4
Q ss_pred CCCCCHHHHHHHHHHHHHhhcC-CCeEEEEcCCch
Q psy12401 127 SSNMTVDDWINIASDVFDNYEN-FDGFVILHGTDT 160 (255)
Q Consensus 127 Ss~~t~~d~~~La~~I~~~~~~-~dG~VVtHGTDT 160 (255)
--.++++.+.+|.+.+++.-.+ --.+||+.|...
T Consensus 38 ~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~ 72 (277)
T PRK08258 38 KNPLTFESYAELRDLFRELVYADDVKAVVLTGAGG 72 (277)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCC
Confidence 3458999999999999876543 235666678763
No 111
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=27.45 E-value=1.9e+02 Score=25.50 Aligned_cols=52 Identities=19% Similarity=0.104 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHHhhc-CCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCCC
Q psy12401 131 TVDDWINIASDVFDNYE-NFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQISI 188 (255)
Q Consensus 131 t~~d~~~La~~I~~~~~-~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP~ 188 (255)
.++...++.+ +... .+||||+.. ++.-.-. ..|.. +...++|||+-+...+.
T Consensus 40 ~~~~~~~~i~---~~~~~~vdgiii~~-~~~~~~~-~~l~~-l~~~~ipvV~~~~~~~~ 92 (288)
T cd01538 40 DPAKQISQIE---NMIAKGVDVLVIAP-VDGEALA-SAVEK-AADAGIPVIAYDRLILN 92 (288)
T ss_pred CHHHHHHHHH---HHHHcCCCEEEEec-CChhhHH-HHHHH-HHHCCCCEEEECCCCCC
Confidence 4555444433 3333 489999874 4432111 23343 23467999999887543
No 112
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=27.20 E-value=4.2e+02 Score=23.12 Aligned_cols=57 Identities=11% Similarity=0.127 Sum_probs=33.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhcC--CCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEc
Q psy12401 125 LDSSNMTVDDWINIASDVFDNYEN--FDGFVILHGTDTLCYTAAALSFMFENLGKTVIIT 182 (255)
Q Consensus 125 ~dSs~~t~~d~~~La~~I~~~~~~--~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlT 182 (255)
..+..--.-|+..|..++.-...+ -..||.+||-.+=.....++-+ +.....|||++
T Consensus 66 ~g~~~si~yd~~sl~~al~~~~~~~~~~~ii~ilg~~~g~~~~~~~r~-~~~~g~~v~vN 124 (185)
T PF09314_consen 66 NGSAESIIYDFLSLLHALRFIKQDKIKYDIILILGYGIGPFFLPFLRK-LRKKGGKVVVN 124 (185)
T ss_pred CCchHHHHHHHHHHHHHHHHHhhccccCCEEEEEcCCccHHHHHHHHh-hhhcCCcEEEC
Confidence 334444556677777766432222 3469999998754444444444 33445688876
No 113
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=27.04 E-value=1e+02 Score=20.26 Aligned_cols=27 Identities=11% Similarity=0.305 Sum_probs=20.2
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCeEEEEcCC
Q psy12401 127 SSNMTVDDWINIASDVFDNYENFDGFVILHGT 158 (255)
Q Consensus 127 Ss~~t~~d~~~La~~I~~~~~~~dG~VVtHGT 158 (255)
|.+...+++..+.+.++ -.-+|+.||-
T Consensus 15 SgHad~~~L~~~i~~~~-----p~~vilVHGe 41 (43)
T PF07521_consen 15 SGHADREELLEFIEQLN-----PRKVILVHGE 41 (43)
T ss_dssp SSS-BHHHHHHHHHHHC-----SSEEEEESSE
T ss_pred cCCCCHHHHHHHHHhcC-----CCEEEEecCC
Confidence 88888888887776662 2789999993
No 114
>PRK14072 6-phosphofructokinase; Provisional
Probab=27.01 E-value=1.9e+02 Score=28.45 Aligned_cols=49 Identities=14% Similarity=0.102 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhhc--CCCceEEEc
Q psy12401 131 TVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFE--NLGKTVIIT 182 (255)
Q Consensus 131 t~~d~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l~--~~~kPVVlT 182 (255)
+++++.++.+.++++ +.|++||+=|-|||. +|..|+-.+. +.+.|||--
T Consensus 88 ~~~~~~~~~~~l~~~--~Id~LivIGGdgS~~-~a~~L~e~~~~~g~~i~vIgI 138 (416)
T PRK14072 88 DRAEYERLLEVFKAH--DIGYFFYNGGNDSMD-TALKVSQLAKKMGYPIRCIGI 138 (416)
T ss_pred ChHHHHHHHHHHHHc--CCCEEEEECChHHHH-HHHHHHHHHHHhCCCceEEEe
Confidence 456676666666544 489999999999998 5666665332 445787754
No 115
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=26.94 E-value=82 Score=29.05 Aligned_cols=70 Identities=20% Similarity=0.280 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHHhhcC----CCeEEEEcCCchHHHHHH-HHHhhhcCCCceEEEcCCCCCCCCCCChHHHHHHHHHHH
Q psy12401 131 TVDDWINIASDVFDNYEN----FDGFVILHGTDTLCYTAA-ALSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLIL 205 (255)
Q Consensus 131 t~~d~~~La~~I~~~~~~----~dG~VVtHGTDTLeeTA~-~Lsl~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av~~ 205 (255)
.++|..++++.+.+.+.. -.=|.+-|||+-.+..+| .|..+|.+.+.|=|+.|..-. .-...++..-+.-
T Consensus 120 ~~~D~~~va~aL~~~~~~~~~~~a~vlmGHGt~h~an~~Y~~l~~~l~~~~~~~v~vgtvEG-----~P~~~~vi~~L~~ 194 (262)
T PF06180_consen 120 SPEDYEAVAEALAEEFPKKRKDEAVVLMGHGTPHPANAAYSALQAMLKKHGYPNVFVGTVEG-----YPSLEDVIARLKK 194 (262)
T ss_dssp SHHHHHHHHHHHHCCS-TT-TTEEEEEEE---SCHHHHHHHHHHHHHHCCT-TTEEEEETTS-----SSBHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhccccCCCCEEEEEeCCCCCCccHHHHHHHHHHHhCCCCeEEEEEeCC-----CCCHHHHHHHHHh
Confidence 499999999999987752 234567899999888774 467777777667777777742 2235666555554
No 116
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=26.88 E-value=1.7e+02 Score=26.06 Aligned_cols=53 Identities=17% Similarity=0.048 Sum_probs=30.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhhc-CCCeEEEEc----CCchHHHHHHHHHhhhcCCCceEEE
Q psy12401 126 DSSNMTVDDWINIASDVFDNYE-NFDGFVILH----GTDTLCYTAAALSFMFENLGKTVII 181 (255)
Q Consensus 126 dSs~~t~~d~~~La~~I~~~~~-~~dG~VVtH----GTDTLeeTA~~Lsl~l~~~~kPVVl 181 (255)
.+--+++.+...+.+.|+...+ ..||||+=- |+=-.+.+..+++.. .+.|++|
T Consensus 62 gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a---~~~~~tF 119 (201)
T PF03932_consen 62 GDFVYSDEEIEIMKEDIRMLRELGADGFVFGALTEDGEIDEEALEELIEAA---GGMPVTF 119 (201)
T ss_dssp S-S---HHHHHHHHHHHHHHHHTT-SEEEE--BETTSSB-HHHHHHHHHHH---TTSEEEE
T ss_pred CCccCCHHHHHHHHHHHHHHHHcCCCeeEEEeECCCCCcCHHHHHHHHHhc---CCCeEEE
Confidence 4677899999999999998775 489999832 332335555555542 2455544
No 117
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=26.86 E-value=2.8e+02 Score=26.42 Aligned_cols=62 Identities=16% Similarity=0.160 Sum_probs=44.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhcCCCeEEEEcC----CchHHHHHHHHHhhhcCCCceEEEcCCCCCC
Q psy12401 125 LDSSNMTVDDWINIASDVFDNYENFDGFVILHG----TDTLCYTAAALSFMFENLGKTVIITGSQISI 188 (255)
Q Consensus 125 ~dSs~~t~~d~~~La~~I~~~~~~~dG~VVtHG----TDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP~ 188 (255)
-+...+++++|.++.+.+.+.+.+.|- ||+.| -=.-++-+-++..+ ....+.||+=-|-.++
T Consensus 106 ~~Gp~is~~~~~~~l~~~~~~l~~~d~-VvlsGSlP~g~~~d~y~~li~~~-~~~g~~vilD~Sg~~L 171 (310)
T COG1105 106 FPGPEISEAELEQFLEQLKALLESDDI-VVLSGSLPPGVPPDAYAELIRIL-RQQGAKVILDTSGEAL 171 (310)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcccCCE-EEEeCCCCCCCCHHHHHHHHHHH-HhcCCeEEEECChHHH
Confidence 578999999999999999998866555 77788 33444555566663 3557888875554433
No 118
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=26.78 E-value=2.4e+02 Score=25.20 Aligned_cols=34 Identities=9% Similarity=0.069 Sum_probs=24.6
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCC-CeEEEEcCCch
Q psy12401 127 SSNMTVDDWINIASDVFDNYENF-DGFVILHGTDT 160 (255)
Q Consensus 127 Ss~~t~~d~~~La~~I~~~~~~~-dG~VVtHGTDT 160 (255)
.--++++.+.+|.+.+.+.-.+- -.+||+-|.+.
T Consensus 21 ~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~ 55 (251)
T TIGR03189 21 ANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGP 55 (251)
T ss_pred cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCC
Confidence 46789999999999998865442 25566667653
No 119
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=26.78 E-value=4.7e+02 Score=23.45 Aligned_cols=31 Identities=13% Similarity=-0.025 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCeEEEEcC
Q psy12401 127 SSNMTVDDWINIASDVFDNYENFDGFVILHG 157 (255)
Q Consensus 127 Ss~~t~~d~~~La~~I~~~~~~~dG~VVtHG 157 (255)
---++++.+.+|.+.+++.-++.-.+||++|
T Consensus 25 ~Nal~~~~~~~l~~al~~~~~d~v~~vvltg 55 (261)
T PRK11423 25 RNALSKVLIDDLMQALSDLNRPEIRVVILRA 55 (261)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 3557899999999999876543245555554
No 120
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=26.72 E-value=4.4e+02 Score=23.40 Aligned_cols=32 Identities=13% Similarity=0.060 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHHHHHHHhhcCC-CeEEEEcCCc
Q psy12401 128 SNMTVDDWINIASDVFDNYENF-DGFVILHGTD 159 (255)
Q Consensus 128 s~~t~~d~~~La~~I~~~~~~~-dG~VVtHGTD 159 (255)
-.++++.+.+|.+.+.+..++- -.+||++|..
T Consensus 25 Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g 57 (260)
T PRK07511 25 NALHPDMYAAGIEALNTAERDPSIRAVVLTGAG 57 (260)
T ss_pred cCCCHHHHHHHHHHHHHhccCCCeEEEEEECCC
Confidence 4588999999999999876542 2566667765
No 121
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=26.67 E-value=3.6e+02 Score=22.96 Aligned_cols=75 Identities=12% Similarity=0.016 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCCC---CCCCChHHHHHHHHHHH
Q psy12401 129 NMTVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQISI---FQPRSDGVDNFIASLIL 205 (255)
Q Consensus 129 ~~t~~d~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP~---~~~~sDg~~NL~~Av~~ 205 (255)
...++...+..+.+.+. ++||||+..++++.. ...+.. +...+.|||+-+...+. .....|-...-..++..
T Consensus 38 ~~~~~~~~~~l~~~~~~--~vdgii~~~~~~~~~--~~~i~~-~~~~~ipvV~~~~~~~~~~~~~V~~d~~~~g~~~~~~ 112 (273)
T cd06305 38 GGDDAKQADQIDQAIAQ--KVDAIIIQHGRAEVL--KPWVKR-ALDAGIPVVAFDVDSDNPKVNNTTQDDYSLARLSLDQ 112 (273)
T ss_pred CCCHHHHHHHHHHHHHc--CCCEEEEecCChhhh--HHHHHH-HHHcCCCEEEecCCCCCCccceeeechHHHHHHHHHH
Confidence 34565555444433322 589999987654321 122343 23567899999876442 22344544444444444
Q ss_pred HhC
Q psy12401 206 AGN 208 (255)
Q Consensus 206 A~~ 208 (255)
...
T Consensus 113 l~~ 115 (273)
T cd06305 113 LVK 115 (273)
T ss_pred HHH
Confidence 333
No 122
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=25.94 E-value=2.9e+02 Score=23.74 Aligned_cols=51 Identities=14% Similarity=0.089 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCC
Q psy12401 131 TVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQIS 187 (255)
Q Consensus 131 t~~d~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP 187 (255)
.++...++.+.+.+ ++||+|+....++. +.-++..+. ..++|||+.+...+
T Consensus 44 ~~~~~~~~i~~~~~---~vdgiii~~~~~~~--~~~~i~~~~-~~~ipvV~~~~~~~ 94 (275)
T cd06307 44 DPAALAAALLRLGA---RSDGVALVAPDHPQ--VRAAVARLA-AAGVPVVTLVSDLP 94 (275)
T ss_pred CHHHHHHHHHHHHh---cCCEEEEeCCCcHH--HHHHHHHHH-HCCCcEEEEeCCCC
Confidence 34444444444433 58999998544332 222345433 46789998876544
No 123
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=25.77 E-value=1.3e+02 Score=25.68 Aligned_cols=73 Identities=18% Similarity=0.146 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHHHHhhc-CCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCC--CCCCCCCChHHHHHHHHHH
Q psy12401 128 SNMTVDDWINIASDVFDNYE-NFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQ--ISIFQPRSDGVDNFIASLI 204 (255)
Q Consensus 128 s~~t~~d~~~La~~I~~~~~-~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAm--rP~~~~~sDg~~NL~~Av~ 204 (255)
.+.+++.+.++.+ +.+. .+|||||..-..+.. .-+|.-+. ...+|||+..+. -+......=|+.|...+-.
T Consensus 37 ~~~d~~~q~~~i~---~~i~~~~d~Iiv~~~~~~~~--~~~l~~~~-~~gIpvv~~d~~~~~~~~~~~~v~~d~~~~G~~ 110 (257)
T PF13407_consen 37 AQNDPEEQIEQIE---QAISQGVDGIIVSPVDPDSL--APFLEKAK-AAGIPVVTVDSDEAPDSPRAAYVGTDNYEAGKL 110 (257)
T ss_dssp STTTHHHHHHHHH---HHHHTTESEEEEESSSTTTT--HHHHHHHH-HTTSEEEEESSTHHTTSTSSEEEEE-HHHHHHH
T ss_pred CCCCHHHHHHHHH---HHHHhcCCEEEecCCCHHHH--HHHHHHHh-hcCceEEEEeccccccccceeeeeccHHHHHHH
Confidence 3445555554444 3332 489999887776433 34556533 568999998888 2222222334555544444
Q ss_pred HH
Q psy12401 205 LA 206 (255)
Q Consensus 205 ~A 206 (255)
+|
T Consensus 111 ~a 112 (257)
T PF13407_consen 111 AA 112 (257)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 124
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=25.39 E-value=1.6e+02 Score=30.70 Aligned_cols=47 Identities=23% Similarity=0.256 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhhc--CCCceEE
Q psy12401 131 TVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFE--NLGKTVI 180 (255)
Q Consensus 131 t~~d~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l~--~~~kPVV 180 (255)
+++++.++.+.++++ +.|++||+=|-|||.- |..|+-.+. +.+.+||
T Consensus 158 ~~e~~~~i~e~l~~l--~Id~LvvIGGddS~~~-A~~Lae~~~~~~~~i~VI 206 (610)
T PLN03028 158 TTEQVNAALAACEAL--KLDGLVIIGGVTSNTD-AAQLAETFAEAKCKTKVV 206 (610)
T ss_pred CHHHHHHHHHHHHHc--CCCEEEEeCCchHHHH-HHHHHHHHHHcCCCceEE
Confidence 466777777666654 5899999999999985 555554332 3466766
No 125
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=25.21 E-value=1.8e+02 Score=28.06 Aligned_cols=27 Identities=19% Similarity=0.142 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEcCC
Q psy12401 132 VDDWINIASDVFDNYENFDGFVILHGT 158 (255)
Q Consensus 132 ~~d~~~La~~I~~~~~~~dG~VVtHGT 158 (255)
++|...|.+.+++.++++|=||.|=||
T Consensus 218 ~Dd~~~i~~~l~~a~~~~DliittGG~ 244 (394)
T cd00887 218 PDDPEALREALEEALEEADVVITSGGV 244 (394)
T ss_pred CCCHHHHHHHHHHHhhCCCEEEEeCCC
Confidence 567888999999888778977777666
No 126
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=24.91 E-value=2.1e+02 Score=29.55 Aligned_cols=47 Identities=28% Similarity=0.417 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhhc--CCCceEE
Q psy12401 131 TVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFE--NLGKTVI 180 (255)
Q Consensus 131 t~~d~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l~--~~~kPVV 180 (255)
+++++.++.+.+++. +.|++||+=|-|||.- |..|+-.+. +.+.+||
T Consensus 175 ~~e~~~~~~~~l~~l--~Id~LViIGGddS~~~-A~~Lae~~~~~g~~i~VI 223 (568)
T PLN02251 175 TPEQFKQAEETATKL--DLDGLVVIGGDDSNTN-ACLLAEYFRAKNLKTRVI 223 (568)
T ss_pred CHHHHHHHHHHHHHc--CCCEEEEeCCchHHHH-HHHHHHHHHhcCCCeeEE
Confidence 677888877777655 5899999999999985 555554343 3446666
No 127
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=24.81 E-value=5e+02 Score=23.52 Aligned_cols=32 Identities=13% Similarity=0.025 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHHHHHHHhhcC-CCeEEEEcCCc
Q psy12401 128 SNMTVDDWINIASDVFDNYEN-FDGFVILHGTD 159 (255)
Q Consensus 128 s~~t~~d~~~La~~I~~~~~~-~dG~VVtHGTD 159 (255)
--++++.+.+|.+.+.+.-.+ --.+||+.|..
T Consensus 30 Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g 62 (275)
T PRK09120 30 NAMSPTLNREMIDVLDALEFDDDAGVLVLTGAG 62 (275)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCC
Confidence 458899999999999876544 23566666765
No 128
>PRK07103 polyketide beta-ketoacyl:acyl carrier protein synthase; Validated
Probab=24.63 E-value=3.2e+02 Score=26.18 Aligned_cols=91 Identities=18% Similarity=0.107 Sum_probs=48.9
Q ss_pred eEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcC--C----CeEEEEcCCch-----HHHHHHHHHhhhcCCCceEEEc
Q psy12401 114 VLYKVLEYDSLLDSSNMTVDDWINIASDVFDNYEN--F----DGFVILHGTDT-----LCYTAAALSFMFENLGKTVIIT 182 (255)
Q Consensus 114 v~~~v~e~~~~~dSs~~t~~d~~~La~~I~~~~~~--~----dG~VVtHGTDT-----LeeTA~~Lsl~l~~~~kPVVlT 182 (255)
+..++.-+....|..+++..+...+.+.+++.+++ . -.+|..|||.| +|..|. +-....+.||.-+
T Consensus 259 i~a~I~g~~~~~d~~~~~~p~~~~~~~a~~~Al~~Agi~~~dId~v~~hgtgt~~~D~~E~~al---~~~~~~~~~v~s~ 335 (410)
T PRK07103 259 PYAKLLGWSMRLDANRGPDPSLEGEMRVIRAALRRAGLGPEDIDYVNPHGTGSPLGDETELAAL---FASGLAHAWINAT 335 (410)
T ss_pred eEEEEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHCCEEEccCCCCCCCCHHHHHHH---hcCCCCCCeEECC
Confidence 33344443333344444433444455666666643 2 25899999988 444443 2122235677666
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHhC
Q psy12401 183 GSQISIFQPRSDGVDNFIASLILAGN 208 (255)
Q Consensus 183 GAmrP~~~~~sDg~~NL~~Av~~A~~ 208 (255)
.++.- .-..+=|...|..++....+
T Consensus 336 k~~~G-h~~~AsG~~~l~~~~l~l~~ 360 (410)
T PRK07103 336 KSLTG-HGLSAAGIVELIATLLQMRA 360 (410)
T ss_pred Ccccc-cCchhhhHHHHHHHHHHHhC
Confidence 66662 22455677777666654433
No 129
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=24.60 E-value=1.6e+02 Score=28.84 Aligned_cols=94 Identities=12% Similarity=0.005 Sum_probs=53.3
Q ss_pred CCHHHHHHHHHHHHHhhcC---CCeEEEEcCCc--hH-HHHHHHHHhhhcCCCceEEEcCCCCCCCCCCCh--HHHHHHH
Q psy12401 130 MTVDDWINIASDVFDNYEN---FDGFVILHGTD--TL-CYTAAALSFMFENLGKTVIITGSQISIFQPRSD--GVDNFIA 201 (255)
Q Consensus 130 ~t~~d~~~La~~I~~~~~~---~dG~VVtHGTD--TL-eeTA~~Lsl~l~~~~kPVVlTGAmrP~~~~~sD--g~~NL~~ 201 (255)
..++-+.++.+.|++.+++ .+||+|+|+.. |= =-.++++..+-...+|-.++|=+..|....+.. -+-|-.-
T Consensus 109 ~G~~~~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~y~~~~~~~~~v~P~~~~~~~~v~~YN~~l 188 (434)
T cd02186 109 IGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDYGKKSKLEFTVYPSPQVSTAVVEPYNSVL 188 (434)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCcceeEEEeccCCCcchhHHHHHHHHHHHhcCccceeeEEEeCCCCCCCCeeeehHHHH
Confidence 3466677777777777653 68999999654 31 233445554444567667888888886542221 2334333
Q ss_pred HHHHHhCCCCCcEEEEeCCeEec
Q psy12401 202 SLILAGNYVIPEVTVYFHNKLMR 224 (255)
Q Consensus 202 Av~~A~~~~~~GV~V~f~g~l~~ 224 (255)
++..... ...+++++-|+.++.
T Consensus 189 sl~~l~e-~~d~~~~~dN~al~~ 210 (434)
T cd02186 189 TTHSLLE-HSDCSFMVDNEAIYD 210 (434)
T ss_pred hHHHHHh-hCCeeeeeccHHHHH
Confidence 3332222 224566666665544
No 130
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=24.60 E-value=2.3e+02 Score=24.10 Aligned_cols=51 Identities=4% Similarity=-0.005 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCC
Q psy12401 131 TVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQIS 187 (255)
Q Consensus 131 t~~d~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP 187 (255)
.++...++.+.+.+ .++||||++. +|+-.... ..+....++|||+.+...+
T Consensus 40 ~~~~~~~~i~~l~~--~~vdgiii~~-~~~~~~~~---~~l~~~~~ipvV~i~~~~~ 90 (269)
T cd06275 40 DPERQRSYLRMLAQ--KRVDGLLVMC-SEYDQPLL---AMLERYRHIPMVVMDWGPE 90 (269)
T ss_pred ChHHHHHHHHHHHH--cCCCEEEEec-CCCChHHH---HHHHhcCCCCEEEEecccC
Confidence 44444444433332 2489999974 44322221 2112235799999987543
No 131
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=24.44 E-value=4.6e+02 Score=22.56 Aligned_cols=44 Identities=9% Similarity=-0.013 Sum_probs=24.2
Q ss_pred HHHHHhhc-CCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCC
Q psy12401 140 SDVFDNYE-NFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQIS 187 (255)
Q Consensus 140 ~~I~~~~~-~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP 187 (255)
+.++.... ++|||||+ +++.-+. ++.+.-....+|||+.+...+
T Consensus 47 ~~~~~l~~~~vdgiii~-~~~~~~~---~~~~~~~~~~ipvv~~~~~~~ 91 (260)
T cd06304 47 PNLRQLAAQGYDLIFGV-GFGFMDA---VEKVAKEYPDVKFAIIDGVVD 91 (260)
T ss_pred HHHHHHHHcCCCEEEEC-CcchhHH---HHHHHHHCCCCEEEEecCccC
Confidence 33444332 48999996 5553222 223311123679999987644
No 132
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=24.43 E-value=1.5e+02 Score=25.40 Aligned_cols=52 Identities=10% Similarity=0.141 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCC
Q psy12401 130 MTVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQI 186 (255)
Q Consensus 130 ~t~~d~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmr 186 (255)
-.++...++.+.+.+. ++||+||...... .+-..+.. +...++|||+.+...
T Consensus 40 ~~~~~~~~~i~~l~~~--~vdgiii~~~~~~--~~~~~~~~-l~~~~iPvv~~~~~~ 91 (272)
T cd06301 40 NDVATQLSQVENFIAQ--GVDAIIVVPVDTA--ATAPIVKA-ANAAGIPLVYVNRRP 91 (272)
T ss_pred CCHHHHHHHHHHHHHc--CCCEEEEecCchh--hhHHHHHH-HHHCCCeEEEecCCC
Confidence 3555555544433322 4899999753322 12223444 236688999988654
No 133
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=24.24 E-value=2.3e+02 Score=24.23 Aligned_cols=51 Identities=14% Similarity=0.151 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHHhhcCCCeEEEEcCC-chHHHHHHHHHhhhcCCCceEEEcCCCCC
Q psy12401 131 TVDDWINIASDVFDNYENFDGFVILHGT-DTLCYTAAALSFMFENLGKTVIITGSQIS 187 (255)
Q Consensus 131 t~~d~~~La~~I~~~~~~~dG~VVtHGT-DTLeeTA~~Lsl~l~~~~kPVVlTGAmrP 187 (255)
.++...+..+.+... ++||||+.... +.+.. .+.. +....+|||+-.+..+
T Consensus 45 ~~~~~~~~~~~~~~~--~vdgiIi~~~~~~~~~~---~l~~-~~~~~iPvv~~~~~~~ 96 (272)
T cd06300 45 DVAQQIADIRNLIAQ--GVDAIIINPASPTALNP---VIEE-ACEAGIPVVSFDGTVT 96 (272)
T ss_pred CHHHHHHHHHHHHHc--CCCEEEEeCCChhhhHH---HHHH-HHHCCCeEEEEecCCC
Confidence 444444443333222 59999997643 22222 3444 3356889998876543
No 134
>PF03432 Relaxase: Relaxase/Mobilisation nuclease domain ; InterPro: IPR005094 Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalysing trans-esterification [].
Probab=24.13 E-value=1.8e+02 Score=25.15 Aligned_cols=30 Identities=20% Similarity=0.292 Sum_probs=24.6
Q ss_pred CCCCCHHHHHHHHHHHHHhhc--CCCeEEEEcC
Q psy12401 127 SSNMTVDDWINIASDVFDNYE--NFDGFVILHG 157 (255)
Q Consensus 127 Ss~~t~~d~~~La~~I~~~~~--~~dG~VVtHG 157 (255)
.. ++++.|.+|+....+.+. ++.-+|++|-
T Consensus 67 ~e-~~~e~~~~~~~~~~~~~~~~~~~~v~~~H~ 98 (242)
T PF03432_consen 67 DE-LTPEQAHEIAREFAEEMGPGNHQYVVVVHT 98 (242)
T ss_pred cc-cCHHHHHHHHHHHHHHcCCCCcceEEEECC
Confidence 44 999999999998877763 5888999984
No 135
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.06 E-value=4.5e+02 Score=22.30 Aligned_cols=35 Identities=14% Similarity=0.211 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCC
Q psy12401 148 NFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQIS 187 (255)
Q Consensus 148 ~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP 187 (255)
++||+||...... . ..+..+ ...+.|||+-+...+
T Consensus 55 ~~dgiii~~~~~~-~---~~~~~~-~~~~ipvV~i~~~~~ 89 (270)
T cd06296 55 RTDGVILVTPELT-S---AQRAAL-RRTGIPFVVVDPAGD 89 (270)
T ss_pred CCCEEEEecCCCC-h---HHHHHH-hcCCCCEEEEecccC
Confidence 4899999865422 1 225553 356889999998753
No 136
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=23.83 E-value=4.2e+02 Score=21.89 Aligned_cols=51 Identities=14% Similarity=0.286 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCC
Q psy12401 131 TVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQIS 187 (255)
Q Consensus 131 t~~d~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP 187 (255)
+++...+..+.+.+ .++||+|+....... .. .+.. +.+.++|||+-++-.+
T Consensus 40 ~~~~~~~~~~~~~~--~~~d~ii~~~~~~~~--~~-~~~~-l~~~~ip~v~~~~~~~ 90 (264)
T cd01537 40 DAEKQLSALENLIA--RGVDGIIIAPSDLTA--PT-IVKL-ARKAGIPVVLVDRDIP 90 (264)
T ss_pred CHHHHHHHHHHHHH--cCCCEEEEecCCCcc--hh-HHHH-hhhcCCCEEEeccCCC
Confidence 34444444443332 258999996544332 22 4555 3467899998877655
No 137
>PRK01215 competence damage-inducible protein A; Provisional
Probab=23.81 E-value=2.6e+02 Score=25.66 Aligned_cols=27 Identities=26% Similarity=0.229 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEcCC
Q psy12401 132 VDDWINIASDVFDNYENFDGFVILHGT 158 (255)
Q Consensus 132 ~~d~~~La~~I~~~~~~~dG~VVtHGT 158 (255)
++|...|.+.+++.++++|=||+|=|+
T Consensus 46 ~Dd~~~I~~~l~~a~~~~DlVIttGG~ 72 (264)
T PRK01215 46 MDDIEEIVSAFREAIDRADVVVSTGGL 72 (264)
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 566778889998888778877777555
No 138
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=23.73 E-value=5.2e+02 Score=22.95 Aligned_cols=32 Identities=6% Similarity=0.077 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHHHHHHHhhcC-CCeEEEEcCCc
Q psy12401 128 SNMTVDDWINIASDVFDNYEN-FDGFVILHGTD 159 (255)
Q Consensus 128 s~~t~~d~~~La~~I~~~~~~-~dG~VVtHGTD 159 (255)
--++.+.+.+|.+.+.+.-.+ --.+||+.|+.
T Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g 58 (257)
T PRK05862 26 NALNDALMDELGAALAAFDADEGIGAIVITGSE 58 (257)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCC
Confidence 568899999999999877644 23566667875
No 139
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=23.68 E-value=1.3e+02 Score=28.36 Aligned_cols=65 Identities=20% Similarity=0.229 Sum_probs=42.2
Q ss_pred EEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhc-CCCeEEEEcCCc-h---------HHHHHHHHHhhhcCCCceEEEc
Q psy12401 115 LYKVLEYDSLLDSSNMTVDDWINIASDVFDNYE-NFDGFVILHGTD-T---------LCYTAAALSFMFENLGKTVIIT 182 (255)
Q Consensus 115 ~~~v~e~~~~~dSs~~t~~d~~~La~~I~~~~~-~~dG~VVtHGTD-T---------LeeTA~~Lsl~l~~~~kPVVlT 182 (255)
.+.++.... -.|.+..++++...-+...+.-. +|||+||| |.- . .+|...+++++- ...+|++..
T Consensus 66 ~v~~~~~~~-h~~~~~~~~hl~~~y~~~~~i~~~~~DG~IIT-GAp~e~~~fedv~YW~El~~i~~w~~-~~~~s~LgI 141 (302)
T PRK05368 66 DIHLLRIDS-HESKNTPAEHLENFYCTFEDIKDEKFDGLIIT-GAPVEQLPFEDVDYWDELKEILDWAK-THVTSTLFI 141 (302)
T ss_pred EEEEEecCC-cCCCCCCHHHHHHhccCHHHhccCCCCEEEEc-CCCCCCccCCCCchHHHHHHHHHHHH-HcCCCEEEE
Confidence 344444443 56889999999998888876643 49999999 443 1 334555666643 345666643
No 140
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=23.67 E-value=1.1e+02 Score=24.50 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=23.9
Q ss_pred HHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhhc---CCCceEEE
Q psy12401 137 NIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFE---NLGKTVII 181 (255)
Q Consensus 137 ~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l~---~~~kPVVl 181 (255)
.|.+.|++.+.+.+-+||+.|..| . ..-++.+=+. ...+|||.
T Consensus 59 ~ik~~I~~~i~~s~~~IVLig~~T-~-~s~wV~~EI~~A~~~~~~Ii~ 104 (130)
T PF08937_consen 59 YIKRKIRERIKNSSVTIVLIGPNT-A-KSKWVNWEIEYALKKGKPIIG 104 (130)
T ss_dssp THHHHHHHHHHTEEEEEEE--TT------HHHHHHHHHHTTT---EEE
T ss_pred HHHHHHHHHHhcCCEEEEEeCCCc-c-cCcHHHHHHHHHHHCCCCEEE
Confidence 567777888888999999999999 2 2444443221 46788774
No 141
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=23.65 E-value=4e+02 Score=22.47 Aligned_cols=55 Identities=16% Similarity=0.069 Sum_probs=29.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCCC---CCCCChHHHHHHHHHHHHhC
Q psy12401 148 NFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQISI---FQPRSDGVDNFIASLILAGN 208 (255)
Q Consensus 148 ~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP~---~~~~sDg~~NL~~Av~~A~~ 208 (255)
++||+||.-.+.+.. .+.. + ...+|||+.+...+. .....|-...-..++.....
T Consensus 55 ~vdgiii~~~~~~~~----~~~~-~-~~~ipvv~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~ 112 (267)
T cd06284 55 QADGIILLDGSLPPT----ALTA-L-AKLPPIVQACEYIPGLAVPSVSIDNVAAARLAVDHLIS 112 (267)
T ss_pred CCCEEEEecCCCCHH----HHHH-H-hcCCCEEEEecccCCCCcceEEecccHHHHHHHHHHHH
Confidence 489999976654533 2222 3 237899988643221 12335555555555544443
No 142
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=23.52 E-value=2.3e+02 Score=22.12 Aligned_cols=9 Identities=33% Similarity=0.276 Sum_probs=4.4
Q ss_pred CCeEEE-EcC
Q psy12401 149 FDGFVI-LHG 157 (255)
Q Consensus 149 ~dG~VV-tHG 157 (255)
+|=||+ +||
T Consensus 104 ~DLIV~Gs~~ 113 (144)
T PRK15118 104 MDLVVCGHHQ 113 (144)
T ss_pred CCEEEEeCcc
Confidence 455555 444
No 143
>PLN00221 tubulin alpha chain; Provisional
Probab=23.50 E-value=2.1e+02 Score=28.30 Aligned_cols=61 Identities=13% Similarity=0.041 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHHhhcC---CCeEEEEcCCc--h-HHHHHHHHHhhhcCCCceEEEcCCCCCCCCC
Q psy12401 131 TVDDWINIASDVFDNYEN---FDGFVILHGTD--T-LCYTAAALSFMFENLGKTVIITGSQISIFQP 191 (255)
Q Consensus 131 t~~d~~~La~~I~~~~~~---~dG~VVtHGTD--T-LeeTA~~Lsl~l~~~~kPVVlTGAmrP~~~~ 191 (255)
.++-+.++.+.|++.+++ .+||+|+|... | -=..+++|..+-...+|-+++|=+..|....
T Consensus 111 g~~~~~~i~d~ir~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l~d~y~~~~~~~~~v~P~~~~ 177 (450)
T PLN00221 111 GKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQV 177 (450)
T ss_pred hHHHHHHHHHHHHHHHHhccCccceeEeeccCCCccchHHHHHHHHHHHhcccccceeeEeeCCCcC
Confidence 456677777777776653 68999999443 3 2355667776556678888999999997543
No 144
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=23.35 E-value=3.4e+02 Score=22.59 Aligned_cols=76 Identities=13% Similarity=0.185 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCCCCCCCCh---------HHHHH
Q psy12401 129 NMTVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQISIFQPRSD---------GVDNF 199 (255)
Q Consensus 129 ~~t~~d~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP~~~~~sD---------g~~NL 199 (255)
.+.++++.++++.|.+. .-|.+-|..+-...|..+...|...++++++-+..........| -..++
T Consensus 17 ~l~~~~l~~~~~~i~~a-----~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~D~vI~iS~sG~t~~~ 91 (179)
T cd05005 17 KIDEEELDKLISAILNA-----KRIFVYGAGRSGLVAKAFAMRLMHLGLNVYVVGETTTPAIGPGDLLIAISGSGETSSV 91 (179)
T ss_pred hcCHHHHHHHHHHHHhC-----CeEEEEecChhHHHHHHHHHHHHhCCCeEEEeCCCCCCCCCCCCEEEEEcCCCCcHHH
Confidence 45688888888888655 34666688877888888887676778898886543221111111 23566
Q ss_pred HHHHHHHhCC
Q psy12401 200 IASLILAGNY 209 (255)
Q Consensus 200 ~~Av~~A~~~ 209 (255)
..++..|...
T Consensus 92 i~~~~~ak~~ 101 (179)
T cd05005 92 VNAAEKAKKA 101 (179)
T ss_pred HHHHHHHHHC
Confidence 6777777654
No 145
>cd02653 nuc_hydro_3 NH_3: A subgroup of nucleoside hydrolases. This group contains eukaryotic and bacterial proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=23.20 E-value=2.3e+02 Score=26.58 Aligned_cols=59 Identities=12% Similarity=0.121 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCeEEEEcCCchHHHHH----HHHHhhhcCCCceEEEcCCCCCCC
Q psy12401 129 NMTVDDWINIASDVFDNYENFDGFVILHGTDTLCYTA----AALSFMFENLGKTVIITGSQISIF 189 (255)
Q Consensus 129 ~~t~~d~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA----~~Lsl~l~~~~kPVVlTGAmrP~~ 189 (255)
|...+|.++|.-.+..---+.-||..++|--+++.++ ..|.+ +...++| |.-|+.+|+.
T Consensus 7 D~GiDDa~AL~~al~~p~iel~gIt~v~GN~~~~~~~~Na~~ll~~-~g~~dIP-V~~Ga~~pl~ 69 (320)
T cd02653 7 DPGIDDALALLYLLASPDLDVVGITTTAGNVPVEQVAANALGVLEL-LGRTDIP-VYLGADKPLA 69 (320)
T ss_pred CCChHHHHHHHHHhhCCCCeEEEEEEcCCccCHHHHHHHHHHHHHH-cCCCCCc-EEeCCCccCC
Confidence 4467888888876653211367999999998877764 34444 2233577 6788888864
No 146
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=23.20 E-value=5.1e+02 Score=25.01 Aligned_cols=89 Identities=8% Similarity=-0.039 Sum_probs=51.1
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCCCCCCCChHHHHHHHHHHHHh
Q psy12401 128 SNMTVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAG 207 (255)
Q Consensus 128 s~~t~~d~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av~~A~ 207 (255)
...+|.-...+.-.+.....=-+.+.++||+-.-.|.-.+... ++....| +.+.++-..+....+...||..+|.-+.
T Consensus 10 ~~~~p~~~C~~~Ga~~~~~~I~~~~~l~Hg~~GC~~~~~~~~h-f~~~~~~-~~~~~l~e~~iv~g~~~~~L~~~i~~~~ 87 (416)
T cd01980 10 PHLHPQTMCPAFGSLRVLTRIEGAATVLVGDAGCLYGLTFVSH-FYAARRS-IVAVPLSSETLSTGKLFEDIREAIRKLA 87 (416)
T ss_pred cccChhhcChHHHHHHHHhccCCcEEEEeCCCcchhhHHHHHH-HhccCCc-cccCCcccchhccCchHHHHHHHHHHHh
Confidence 3344555555544444433225899999999999875444444 3332234 3444444444443334799999999876
Q ss_pred CCCCCcEEEEe
Q psy12401 208 NYVIPEVTVYF 218 (255)
Q Consensus 208 ~~~~~GV~V~f 218 (255)
....+.++.+.
T Consensus 88 ~~~~p~~I~V~ 98 (416)
T cd01980 88 DPPAYTFIPVI 98 (416)
T ss_pred hcCCCCEEEEe
Confidence 54334444443
No 147
>PRK09116 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=22.97 E-value=3.4e+02 Score=26.12 Aligned_cols=89 Identities=17% Similarity=0.191 Sum_probs=47.0
Q ss_pred eeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcC--C----CeEEEEcCCch----HHHHHHHHHhhhcCCCceEEEc
Q psy12401 113 RVLYKVLEYDSLLDSSNMTVDDWINIASDVFDNYEN--F----DGFVILHGTDT----LCYTAAALSFMFENLGKTVIIT 182 (255)
Q Consensus 113 ~v~~~v~e~~~~~dSs~~t~~d~~~La~~I~~~~~~--~----dG~VVtHGTDT----LeeTA~~Lsl~l~~~~kPVVlT 182 (255)
++.-++.-+...-|..+++..+-..+.+.+++.+++ . -.+|..|||.| ..|+.++-.. +. ...||.
T Consensus 252 ~i~a~i~g~~~~~d~~~~~~p~~~~~~~ai~~AL~~Agi~p~dId~I~~Hgtgt~~~D~~E~~Ai~~~-fg-~~~pv~-- 327 (405)
T PRK09116 252 TIYAEIVGFGTNSDGAHVTQPQAETMQIAMELALKDAGLAPEDIGYVNAHGTATDRGDIAESQATAAV-FG-ARMPIS-- 327 (405)
T ss_pred ceEEEEEEEEEcCCCCcCCCCCHHHHHHHHHHHHHHhCCCHHHcCEEECcCccCCCCCHHHHHHHHHH-hC-CCCeeE--
Confidence 444455555544455556533444556666666643 2 26889999998 3555544443 43 245653
Q ss_pred CCCCCCC-C-CCChHHHHHHHHHHHH
Q psy12401 183 GSQISIF-Q-PRSDGVDNFIASLILA 206 (255)
Q Consensus 183 GAmrP~~-~-~~sDg~~NL~~Av~~A 206 (255)
|.++.- + ..+=|...+..++...
T Consensus 328 -s~K~~~GH~~~AaG~~~~~~~~~~l 352 (405)
T PRK09116 328 -SLKSYFGHTLGACGALEAWMSIEMM 352 (405)
T ss_pred -CcchhhcccHHHHHHHHHHHHHHHH
Confidence 444432 1 2334445554444433
No 148
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=22.73 E-value=3e+02 Score=26.48 Aligned_cols=90 Identities=16% Similarity=0.067 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHHhhcC---CCeEEEEcCCc--h-HHHHHHHHHhhhcCCCceEEEcCCCCCCCCCCChHH---HHHHH
Q psy12401 131 TVDDWINIASDVFDNYEN---FDGFVILHGTD--T-LCYTAAALSFMFENLGKTVIITGSQISIFQPRSDGV---DNFIA 201 (255)
Q Consensus 131 t~~d~~~La~~I~~~~~~---~dG~VVtHGTD--T-LeeTA~~Lsl~l~~~~kPVVlTGAmrP~~~~~sDg~---~NL~~ 201 (255)
..+-+.++.+.|++.+++ .+||+|+|+.. | =-..++++..+-...+|..++|=+..|... .|-. -|-.-
T Consensus 78 g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~~~~~~~~v~P~~~--~~~~v~~yN~~l 155 (379)
T cd02190 78 GHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPEVYRFVTSVYPSAD--DDVITSPYNSVL 155 (379)
T ss_pred chhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhcCccceEEEeecCCCC--CCceecccHHHH
Confidence 466677788888887754 57999999654 3 133445555544467788889888888653 4432 34333
Q ss_pred HHHHHhCCCCCcEEEEeCCeEe
Q psy12401 202 SLILAGNYVIPEVTVYFHNKLM 223 (255)
Q Consensus 202 Av~~A~~~~~~GV~V~f~g~l~ 223 (255)
++.-... ..-.|+++-|+.++
T Consensus 156 sl~~l~~-~~d~~i~~~N~~l~ 176 (379)
T cd02190 156 ALRELIE-HADCVLPIENQALV 176 (379)
T ss_pred HHHHHHH-hCCeeEEeccHHHH
Confidence 3332222 12355555555544
No 149
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=22.66 E-value=2.3e+02 Score=24.49 Aligned_cols=40 Identities=10% Similarity=-0.084 Sum_probs=23.2
Q ss_pred HHHhhc-CCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCC
Q psy12401 142 VFDNYE-NFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQ 185 (255)
Q Consensus 142 I~~~~~-~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAm 185 (255)
++.... ++||+|+.. ++.-. .. .+.. +.+.+.|||+.+..
T Consensus 50 i~~~~~~~vdgiI~~~-~~~~~-~~-~~~~-~~~~giPvV~~~~~ 90 (268)
T cd06306 50 LEDCAAWGADAILLGA-VSPDG-LN-EILQ-QVAASIPVIALVND 90 (268)
T ss_pred HHHHHHcCCCEEEEcC-CChhh-HH-HHHH-HHHCCCCEEEeccC
Confidence 444333 489999874 44322 22 3444 23678999977654
No 150
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=22.59 E-value=2.8e+02 Score=27.75 Aligned_cols=71 Identities=8% Similarity=0.041 Sum_probs=43.4
Q ss_pred CeEEEEc-CCchHHHHHHHHHhhhcCCCceEEEcCCCCCCCCCCChH--------------------------HHHHHHH
Q psy12401 150 DGFVILH-GTDTLCYTAAALSFMFENLGKTVIITGSQISIFQPRSDG--------------------------VDNFIAS 202 (255)
Q Consensus 150 dG~VVtH-GTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP~~~~~sDg--------------------------~~NL~~A 202 (255)
-|+|++| |...+..+..+..- + ....|||+...+.|....+.++ +.=+..|
T Consensus 71 ~~v~~~t~GpG~~n~~~gl~~A-~-~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~s~~v~~~~~i~~~i~~A 148 (561)
T PRK06048 71 VGVCVATSGPGATNLVTGIATA-Y-MDSVPIVALTGQVPRSMIGNDAFQEADITGITMPITKHNYLVQDAKDLPRIIKEA 148 (561)
T ss_pred CeEEEECCCCcHHHHHHHHHHH-h-hcCCCEEEEeccCCccccCCCCccccchhhhccCcceEEEEeCCHHHHHHHHHHH
Confidence 3666665 88888876655553 2 4578998766676655443332 2225567
Q ss_pred HHHHhCCCCCcEEEEeCCeE
Q psy12401 203 LILAGNYVIPEVTVYFHNKL 222 (255)
Q Consensus 203 v~~A~~~~~~GV~V~f~g~l 222 (255)
++.|.+....-|+|.+--.+
T Consensus 149 ~~~A~~~~~GPV~l~iP~dv 168 (561)
T PRK06048 149 FHIASTGRPGPVLIDLPKDV 168 (561)
T ss_pred HHHHhcCCCCeEEEecChhh
Confidence 77776654445777776544
No 151
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=22.50 E-value=2.3e+02 Score=24.86 Aligned_cols=53 Identities=15% Similarity=0.033 Sum_probs=32.8
Q ss_pred CCCCCCCHHHHH-HHHHHHHHhhcCCCeEE-EEcCCc------hHHHHHHHHHhhhcCCCceEEEc
Q psy12401 125 LDSSNMTVDDWI-NIASDVFDNYENFDGFV-ILHGTD------TLCYTAAALSFMFENLGKTVIIT 182 (255)
Q Consensus 125 ~dSs~~t~~d~~-~La~~I~~~~~~~dG~V-VtHGTD------TLeeTA~~Lsl~l~~~~kPVVlT 182 (255)
.+...+-|..|. .|.+.=.+.+++.|.+| ++-++| |+-|..|+..+ .|||+-+
T Consensus 44 ~~~~~~~p~~~a~~i~e~d~~~i~~aD~vla~ld~fr~~~DsGTa~E~GYa~Al-----gKPv~~~ 104 (172)
T COG3613 44 EPIAETGPNETAEKIYEADIKLIDQADIVLANLDPFRPDPDSGTAFELGYAIAL-----GKPVYAY 104 (172)
T ss_pred cCccccCccHHHHHHHHHHHHHHhhcCEEEEecCCCCCCCCCcchHHHHHHHHc-----CCceEEE
Confidence 556777774443 33333344556787554 566766 77777776654 7999854
No 152
>PTZ00335 tubulin alpha chain; Provisional
Probab=22.50 E-value=1.6e+02 Score=29.15 Aligned_cols=92 Identities=13% Similarity=0.036 Sum_probs=53.2
Q ss_pred CHHHHHHHHHHHHHhhcC---CCeEEEEcCCc--hH-HHHHHHHHhhhcCCCceEEEcCCCCCCCCCCChHHHHHHHHHH
Q psy12401 131 TVDDWINIASDVFDNYEN---FDGFVILHGTD--TL-CYTAAALSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLI 204 (255)
Q Consensus 131 t~~d~~~La~~I~~~~~~---~dG~VVtHGTD--TL-eeTA~~Lsl~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av~ 204 (255)
.++-+.++.+.|++.+++ .+||+|+|+.. |= =-.+++|..+-...+|-+++|=+..|... .+|...=.+.++.
T Consensus 111 G~~~~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d~yp~~~~~~~~v~P~~~-~~~~~v~~YN~~L 189 (448)
T PTZ00335 111 GKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQ-VSTAVVEPYNSVL 189 (448)
T ss_pred hhhHhHHHHHHHHHhHHhccCccceeEeeccCCCccchHHHHHHHHHHHhccccceeeEEecCCCC-CCCcceeehHHHH
Confidence 455677777777777653 68999999654 31 13455555544456666688888888653 2344433334443
Q ss_pred HHhCC--CCCcEEEEeCCeEe
Q psy12401 205 LAGNY--VIPEVTVYFHNKLM 223 (255)
Q Consensus 205 ~A~~~--~~~GV~V~f~g~l~ 223 (255)
.-.+- ...+|+++-|+.++
T Consensus 190 sl~~L~e~~d~~~~~dN~al~ 210 (448)
T PTZ00335 190 STHSLLEHTDVAVMLDNEAIY 210 (448)
T ss_pred hHHHHHhhCCeeeeechHHHH
Confidence 22221 12456666665554
No 153
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=22.40 E-value=3.3e+02 Score=25.12 Aligned_cols=79 Identities=16% Similarity=0.225 Sum_probs=47.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhc-CCCeEEE--E--cCCchHHHHHHHHHhh-----------------------hcCCC
Q psy12401 125 LDSSNMTVDDWINIASDVFDNYE-NFDGFVI--L--HGTDTLCYTAAALSFM-----------------------FENLG 176 (255)
Q Consensus 125 ~dSs~~t~~d~~~La~~I~~~~~-~~dG~VV--t--HGTDTLeeTA~~Lsl~-----------------------l~~~~ 176 (255)
-.+.-++.++...+.+.|+...+ ..||||+ + .|+=-.+-+.-++... |..+.
T Consensus 62 ~gdF~Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG 141 (248)
T PRK11572 62 GGDFCYSDGEFAAMLEDIATVRELGFPGLVTGVLDVDGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLG 141 (248)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcC
Confidence 35677899999999999987765 4899998 2 2222223333333321 11344
Q ss_pred ceEEEcCCCCCCCCCCChHHHHHHHHHHHH
Q psy12401 177 KTVIITGSQISIFQPRSDGVDNFIASLILA 206 (255)
Q Consensus 177 kPVVlTGAmrP~~~~~sDg~~NL~~Av~~A 206 (255)
.-=|||.-+.+. -.||...|..-+..|
T Consensus 142 ~~rILTSGg~~~---a~~g~~~L~~lv~~a 168 (248)
T PRK11572 142 VARILTSGQQQD---AEQGLSLIMELIAAS 168 (248)
T ss_pred CCEEECCCCCCC---HHHHHHHHHHHHHhc
Confidence 445667655543 357788886555544
No 154
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=22.35 E-value=1.6e+02 Score=27.93 Aligned_cols=55 Identities=7% Similarity=0.047 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCeEEEEcCCc-hHHHHHHHHHh---hhcCCCceEEEcCCCC
Q psy12401 129 NMTVDDWINIASDVFDNYENFDGFVILHGTD-TLCYTAAALSF---MFENLGKTVIITGSQI 186 (255)
Q Consensus 129 ~~t~~d~~~La~~I~~~~~~~dG~VVtHGTD-TLeeTA~~Lsl---~l~~~~kPVVlTGAmr 186 (255)
..++++..++++.+++. .+|-|=|+||.- ... -.+++.+ .-...++||+.+|..+
T Consensus 237 ~~~~ee~~~~~~~l~~~--g~d~i~vs~g~~~~~~-~~~~~~~~~~ik~~~~ipvi~~G~i~ 295 (338)
T cd02933 237 SDPEATFSYLAKELNKR--GLAYLHLVEPRVAGNP-EDQPPDFLDFLRKAFKGPLIAAGGYD 295 (338)
T ss_pred CCCHHHHHHHHHHHHHc--CCcEEEEecCCCCCcc-cccchHHHHHHHHHcCCCEEEECCCC
Confidence 46788888888877655 367888888842 111 1233332 1223578999988864
No 155
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=22.29 E-value=1.9e+02 Score=29.72 Aligned_cols=48 Identities=29% Similarity=0.271 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhhc--CCCceEEE
Q psy12401 131 TVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFE--NLGKTVII 181 (255)
Q Consensus 131 t~~d~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l~--~~~kPVVl 181 (255)
+++++.++.+.+++. +.|++||+=|-|||.- |..|+-.+. +.+.|||-
T Consensus 149 ~~e~~~~i~~~l~~~--~Id~LviIGGd~S~~~-A~~Lae~~~~~~~~i~VIG 198 (555)
T PRK07085 149 TEEQKEACLETVKKL--KLDGLVIIGGDDSNTN-AAILAEYFAKHGCKTQVIG 198 (555)
T ss_pred CHHHHHHHHHHHHHc--CCCEEEEeCCchHHHH-HHHHHHHHHHhCCCccEEE
Confidence 567777777766654 5899999999999985 555554333 34677774
No 156
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=22.17 E-value=1.6e+02 Score=29.38 Aligned_cols=58 Identities=16% Similarity=0.123 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhhc--CCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCCCC
Q psy12401 132 VDDWINIASDVFDNYE--NFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQISIF 189 (255)
Q Consensus 132 ~~d~~~La~~I~~~~~--~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP~~ 189 (255)
.....+.++.|.+.+. .+|++|+|-.-.|-.-+++.+.--++...+|||.-++..|..
T Consensus 318 ~~~a~~~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~~GIPvV~i~~~~pI~ 377 (431)
T TIGR01917 318 VANSKQFAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHICTVTPIA 377 (431)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEeechhHH
Confidence 3455567788877774 399999985555666678788777888899999877666543
No 157
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=22.06 E-value=2.1e+02 Score=23.47 Aligned_cols=66 Identities=17% Similarity=0.063 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhhcCC-----------------CceEEEcCCCCCCCCCCChHHH
Q psy12401 135 WINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFENL-----------------GKTVIITGSQISIFQPRSDGVD 197 (255)
Q Consensus 135 ~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l~~~-----------------~kPVVlTGAmrP~~~~~sDg~~ 197 (255)
+..+++.+++.+..-..++|..... +.|..||-+||.. ..||+||..+--......|-.-
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~---~~a~~lD~~LW~~~~~sFlPH~~~~~~~~~~~PV~i~~~~~~~~~~~~~vLi 91 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDE---EQAEALDELLWTFSPDSFLPHGLAGEPPAARQPVLITWDQEANPNNHADVLI 91 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSH---HHHHHHHHHTTTSSTT----EEETT-SSTT--SEEEE-TTS----S--SEEE
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCH---HHHHHHHHHHHCCCCCCCCCCcccCCCCCCCCeEEEecCcccCCCCCCCEEE
Confidence 6777888888887666666665553 5677888888843 2488888877411112355666
Q ss_pred HHHHHH
Q psy12401 198 NFIASL 203 (255)
Q Consensus 198 NL~~Av 203 (255)
||...+
T Consensus 92 nL~~~~ 97 (137)
T PF04364_consen 92 NLSGEV 97 (137)
T ss_dssp E--SS-
T ss_pred ECCCCC
Confidence 664444
No 158
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=21.93 E-value=9.2e+02 Score=25.87 Aligned_cols=60 Identities=20% Similarity=0.224 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhhc---CCCceEEEcCCCCCCCCCCCh
Q psy12401 132 VDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFE---NLGKTVIITGSQISIFQPRSD 194 (255)
Q Consensus 132 ~~d~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l~---~~~kPVVlTGAmrP~~~~~sD 194 (255)
.+++.++++.++++ +.|++||+=|-+||.- |..|+-... ....|||.-=+-.--+-+++|
T Consensus 464 ~~~~~~i~~~l~~~--~Id~LivIGGdgs~~~-a~~L~~~~~~y~~~~i~vVgIPkTIDNDv~gTd 526 (762)
T cd00764 464 KKDLETIAYNFQKY--GIDGLIIVGGFEAYKG-LLQLREAREQYEEFCIPMVLIPATVSNNVPGTD 526 (762)
T ss_pred HHHHHHHHHHHHHc--CCCEEEEECChhHHHH-HHHHHHHHhhCCCCCccEEEecccccCCCCCCc
Confidence 45666666655544 5899999999999984 445543222 256899987666666666666
No 159
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=21.89 E-value=3.2e+02 Score=24.15 Aligned_cols=57 Identities=14% Similarity=0.156 Sum_probs=37.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhhcCCCeEEEEcCCchH----HHHHHHHHhhhcCCCceEEEcCC
Q psy12401 126 DSSNMTVDDWINIASDVFDNYENFDGFVILHGTDTL----CYTAAALSFMFENLGKTVIITGS 184 (255)
Q Consensus 126 dSs~~t~~d~~~La~~I~~~~~~~dG~VVtHGTDTL----eeTA~~Lsl~l~~~~kPVVlTGA 184 (255)
..+.++++++.++.+.+.+.+++++-+++ .|..-. +.+..++.. .....+||++--.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~g~~~~~~~~~~~~~~~~~-~~~~~~~i~~D~~ 166 (289)
T cd01164 106 PGPEISEEELEALLEKLKALLKKGDIVVL-SGSLPPGVPADFYAELVRL-AREKGARVILDTS 166 (289)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCEEEE-eCCCCCCcCHHHHHHHHHH-HHHcCCeEEEECC
Confidence 35569999998888887777766777655 465322 344455554 3456789988754
No 160
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=21.81 E-value=2.2e+02 Score=24.29 Aligned_cols=49 Identities=12% Similarity=-0.018 Sum_probs=27.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCCCCCCCChHHHHHHH
Q psy12401 148 NFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQISIFQPRSDGVDNFIA 201 (255)
Q Consensus 148 ~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~ 201 (255)
.+||+|+.=...+-. . +.. +...++|||+-+...+.....+=+..|...
T Consensus 55 ~vdgiii~~~~~~~~---~-~~~-~~~~~ipvV~~~~~~~~~~~~~V~~d~~~~ 103 (264)
T cd06274 55 QVDALIVAGSLPPDD---P-YYL-CQKAGLPVVALDRPGDPSRFPSVVSDNRDG 103 (264)
T ss_pred CCCEEEEcCCCCchH---H-HHH-HHhcCCCEEEecCccCCCCCCEEEEccHHH
Confidence 489999974322211 1 333 235678999998876533223334455544
No 161
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.76 E-value=2.8e+02 Score=24.67 Aligned_cols=53 Identities=11% Similarity=0.171 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCC
Q psy12401 131 TVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQIS 187 (255)
Q Consensus 131 t~~d~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP 187 (255)
..+....+.+.+.+.-.++|||||+-.+... ..++.. +....+|||+.++..+
T Consensus 41 ~~~~~~~~i~~~~~~~~~vdgiIi~~~~~~~---~~~~~~-~~~~giPvV~~~~~~~ 93 (305)
T cd06324 41 DRFLMLQQARTILQRPDKPDALIFTNEKSVA---PELLRL-AEGAGVKLFLVNSGLT 93 (305)
T ss_pred CHHHHHHHHHHHHHhccCCCEEEEcCCccch---HHHHHH-HHhCCCeEEEEecCCC
Confidence 4444444444433321158999997543322 223444 3356789999987554
No 162
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=21.67 E-value=2.4e+02 Score=27.74 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=20.1
Q ss_pred hhhccccCccCCCCcEEEEecCCccee
Q psy12401 36 EKFRFKNQTESLESRVLVIYTGGTIGM 62 (255)
Q Consensus 36 ~~~~~~~~~~~~~~rIlVI~TGGTIa~ 62 (255)
-++-+.......++||.||.||--+..
T Consensus 181 as~G~~~V~V~~~prV~IisTGdEl~~ 207 (419)
T PRK14690 181 SAVGLTRVSVRRPLRVAVLSTGDELVE 207 (419)
T ss_pred HhCCCCeeEeecCCEEEEEEccccccC
Confidence 345556666678899999999977653
No 163
>PRK10116 universal stress protein UspC; Provisional
Probab=21.58 E-value=2.5e+02 Score=21.82 Aligned_cols=12 Identities=25% Similarity=0.063 Sum_probs=7.4
Q ss_pred CCCCcEEEEecC
Q psy12401 46 SLESRVLVIYTG 57 (255)
Q Consensus 46 ~~~~rIlVI~TG 57 (255)
|..+||||...+
T Consensus 1 ~~~~~ILv~~D~ 12 (142)
T PRK10116 1 MSYSNILVAVAV 12 (142)
T ss_pred CCCceEEEEccC
Confidence 345677777655
No 164
>PRK07967 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed
Probab=21.58 E-value=7.4e+02 Score=23.92 Aligned_cols=93 Identities=16% Similarity=0.196 Sum_probs=54.5
Q ss_pred ceeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcCC---CeEEEEcCCch----HHHHHHHHHhhhcCCCceEEEcCC
Q psy12401 112 KRVLYKVLEYDSLLDSSNMTVDDWINIASDVFDNYENF---DGFVILHGTDT----LCYTAAALSFMFENLGKTVIITGS 184 (255)
Q Consensus 112 ~~v~~~v~e~~~~~dSs~~t~~d~~~La~~I~~~~~~~---dG~VVtHGTDT----LeeTA~~Lsl~l~~~~kPVVlTGA 184 (255)
.++.-++.-+...-|..+++..+-..+.+.+++.+++. -..|..|||.| ..|+..+-.+ +.....| .+|
T Consensus 250 a~i~a~i~G~g~~~d~~~~~~p~~~~~~~a~~~Al~~~~~~Idyi~aHgtGT~~~D~~E~~Ai~~~-fg~~~~~---v~s 325 (406)
T PRK07967 250 AKIYAEIVGYGATSDGYDMVAPSGEGAVRCMQMALATVDTPIDYINTHGTSTPVGDVKELGAIREV-FGDKSPA---ISA 325 (406)
T ss_pred CcEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHhCCCCCccEEEcCCCCCCCCCHHHHHHHHHH-hCCCCCe---eEC
Confidence 34555666665545666776556677778888887543 25899999988 3554444333 5332223 445
Q ss_pred CCCC--CCCCChHHHHHHHHHHHHhC
Q psy12401 185 QISI--FQPRSDGVDNFIASLILAGN 208 (255)
Q Consensus 185 mrP~--~~~~sDg~~NL~~Av~~A~~ 208 (255)
.++. .-.++=|...+..++....+
T Consensus 326 ~K~~~GH~~~AaG~~e~i~~~lal~~ 351 (406)
T PRK07967 326 TKSLTGHSLGAAGVQEAIYSLLMMEH 351 (406)
T ss_pred cccccccCccccchHHHHHHHHHHhc
Confidence 5554 22445567777666654444
No 165
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=21.49 E-value=2.7e+02 Score=27.81 Aligned_cols=72 Identities=11% Similarity=0.102 Sum_probs=44.3
Q ss_pred CeEEEEc-CCchHHHHHHHHHhhhcCCCceEEEcCCCCCCCCCCChH--------------------------HHHHHHH
Q psy12401 150 DGFVILH-GTDTLCYTAAALSFMFENLGKTVIITGSQISIFQPRSDG--------------------------VDNFIAS 202 (255)
Q Consensus 150 dG~VVtH-GTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP~~~~~sDg--------------------------~~NL~~A 202 (255)
-|+|++| |...+-.......-. ....|||+...+.|....+.++ +.=|..|
T Consensus 68 ~gv~~~t~GpG~~N~l~~i~~A~--~~~~Pvlvi~G~~~~~~~~~~~~q~~d~~~l~~~vtk~s~~v~~~~~~~~~l~~A 145 (574)
T PRK06882 68 VGCVLVTSGPGATNAITGIATAY--TDSVPLVILSGQVPSNLIGTDAFQECDMLGISRPVVKHSFIVKNAEDIPSTIKKA 145 (574)
T ss_pred CeEEEECCCccHHHHHHHHHHHh--hcCCCEEEEecCCCccccCCCcccccchhhhhhcccceEEEeCCHHHHHHHHHHH
Confidence 4566555 998887766665542 4578998777777766543322 2335567
Q ss_pred HHHHhCCCCCcEEEEeCCeEe
Q psy12401 203 LILAGNYVIPEVTVYFHNKLM 223 (255)
Q Consensus 203 v~~A~~~~~~GV~V~f~g~l~ 223 (255)
++.|.+....-|+|.+--.+.
T Consensus 146 ~~~A~~~~~GPV~l~iP~Dv~ 166 (574)
T PRK06882 146 FYIASTGRPGPVVIDIPKDMV 166 (574)
T ss_pred HHHHhcCCCCCEEEecCHHHh
Confidence 777766544457776665543
No 166
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=21.36 E-value=2.5e+02 Score=23.60 Aligned_cols=27 Identities=26% Similarity=0.254 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhhc--CCCeEEEEcCC
Q psy12401 132 VDDWINIASDVFDNYE--NFDGFVILHGT 158 (255)
Q Consensus 132 ~~d~~~La~~I~~~~~--~~dG~VVtHGT 158 (255)
++|...|.+.+++.++ ++|=||+|=||
T Consensus 45 ~Dd~~~i~~~l~~~~~~~~~DlVIttGGt 73 (163)
T TIGR02667 45 KDDIYQIRAQVSAWIADPDVQVILITGGT 73 (163)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 5667778888888753 58877777665
No 167
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=20.88 E-value=3.1e+02 Score=25.84 Aligned_cols=51 Identities=16% Similarity=0.127 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhhcC--CCeEEEEcCCchHHHHHHHHHhhhcCCCce-EEEcCC
Q psy12401 133 DDWINIASDVFDNYEN--FDGFVILHGTDTLCYTAAALSFMFENLGKT-VIITGS 184 (255)
Q Consensus 133 ~d~~~La~~I~~~~~~--~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kP-VVlTGA 184 (255)
+-+.++.+.+++.+.- -.-++++.|+.|.+.=|..++++- ..++- +|.+|.
T Consensus 48 ~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl~~-~g~~~l~i~~G~ 101 (360)
T PRK05355 48 AVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNLLG-GGKKADYVDTGS 101 (360)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhcCC-CCCeEEEEECCH
Confidence 5555566666666542 235899999999999999999843 33333 445553
No 168
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=20.66 E-value=1.5e+02 Score=24.11 Aligned_cols=51 Identities=12% Similarity=0.014 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHHhhcC--CCeEEEEc---CCchHHHHHHHHHhhhcCCCceEEEc
Q psy12401 130 MTVDDWINIASDVFDNYEN--FDGFVILH---GTDTLCYTAAALSFMFENLGKTVIIT 182 (255)
Q Consensus 130 ~t~~d~~~La~~I~~~~~~--~dG~VVtH---GTDTLeeTA~~Lsl~l~~~~kPVVlT 182 (255)
+++..+.+|.+.+++.-.+ ..+|||.- |.|.-+ +..|.-++...+||||-.
T Consensus 8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~--~~~i~~~l~~~~kpvva~ 63 (161)
T cd00394 8 IEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDA--GMNIVDALQASRKPVIAY 63 (161)
T ss_pred EccchHHHHHHHHHHHHhCCCCceEEEEEECCCcCHHH--HHHHHHHHHHhCCCEEEE
Confidence 3345566666666655433 56766642 333222 111222234556787754
No 169
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=20.55 E-value=2.7e+02 Score=23.94 Aligned_cols=36 Identities=28% Similarity=0.263 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCC
Q psy12401 148 NFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQIS 187 (255)
Q Consensus 148 ~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP 187 (255)
++||+|+.. +|. ..+.-.+..+. . ++|||+-+...+
T Consensus 55 ~vDgiIi~~-~~~-~~~~~~l~~~~-~-~ipvV~~~~~~~ 90 (271)
T cd06314 55 GVDGIAISP-IDP-KAVIPALNKAA-A-GIKLITTDSDAP 90 (271)
T ss_pred CCCEEEEec-CCh-hHhHHHHHHHh-c-CCCEEEecCCCC
Confidence 489999985 442 21223334323 5 899999987543
No 170
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=20.54 E-value=2.3e+02 Score=26.15 Aligned_cols=68 Identities=22% Similarity=0.204 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhhc---C-CCeEEEEcCCchHHHHHHH-HHhhhcCCCc-eEEEcCCCCCCCCCCChHHHHHHHHHHHH
Q psy12401 133 DDWINIASDVFDNYE---N-FDGFVILHGTDTLCYTAAA-LSFMFENLGK-TVIITGSQISIFQPRSDGVDNFIASLILA 206 (255)
Q Consensus 133 ~d~~~La~~I~~~~~---~-~dG~VVtHGTDTLeeTA~~-Lsl~l~~~~k-PVVlTGAmrP~~~~~sDg~~NL~~Av~~A 206 (255)
.|...+.+.|++.+. + ---|.+.|||+-=+.+||+ |++++....- ||++. +- .+.-...++..-++-.
T Consensus 118 ~DYe~~v~aik~~~ppl~k~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v~-~v-----e~yP~~d~vi~~l~~~ 191 (265)
T COG4822 118 NDYEICVEAIKDQIPPLNKDEILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFVA-AV-----EGYPLVDTVIEYLRKN 191 (265)
T ss_pred hhHHHHHHHHHHhcCCcCcCeEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEEE-Ee-----cCCCcHHHHHHHHHHc
Confidence 789999999998875 2 3456678999998888875 6777754433 55443 22 2333567777766643
No 171
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=20.46 E-value=2.2e+02 Score=27.04 Aligned_cols=39 Identities=23% Similarity=0.339 Sum_probs=29.5
Q ss_pred EEEEEecCCCCCCCCCHHHHHHHHHHHHHhhc-CCCeEEEE
Q psy12401 116 YKVLEYDSLLDSSNMTVDDWINIASDVFDNYE-NFDGFVIL 155 (255)
Q Consensus 116 ~~v~e~~~~~dSs~~t~~d~~~La~~I~~~~~-~~dG~VVt 155 (255)
+.++.... -.|.+...+++...-+...+.-. .+||+|||
T Consensus 67 i~~~~~~s-h~~k~t~~~hl~~fY~~f~~ik~~~fDGlIIT 106 (300)
T TIGR01001 67 ITLLRTDS-RKSKNTPIEHLNKFYTTFEAVKDRKFDGLIIT 106 (300)
T ss_pred EEEEEecc-ccCCCCCHHHHHHHhhCHHHHhcCCCCEEEEc
Confidence 44443333 57899999999999888877643 49999998
No 172
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=20.42 E-value=2e+02 Score=24.75 Aligned_cols=65 Identities=11% Similarity=0.096 Sum_probs=36.3
Q ss_pred CCeEEEEcCCchH-HH-HHHHHHhhhcCCCceEEEcCC-CCCCCCCCC-hHHHHHHHHHHHHhCCCCCcE
Q psy12401 149 FDGFVILHGTDTL-CY-TAAALSFMFENLGKTVIITGS-QISIFQPRS-DGVDNFIASLILAGNYVIPEV 214 (255)
Q Consensus 149 ~dG~VVtHGTDTL-ee-TA~~Lsl~l~~~~kPVVlTGA-mrP~~~~~s-Dg~~NL~~Av~~A~~~~~~GV 214 (255)
+..-||+-|-... ++ ...+..| .+.++.||+.|.. ++|.-+.+. +=+.|+-.+.+....+.-.|+
T Consensus 27 AKRPvIivG~ga~~~~a~e~l~~l-aEklgiPVvtT~~~~~~~~~kgv~~~~~~lg~~g~~~~~p~~e~~ 95 (162)
T TIGR00315 27 AKRPLLIVGPENLEDEEKELIVKF-IEKFDLPVVATADTYRALIEAGIESEEMNLHEITQFLADPSWEGF 95 (162)
T ss_pred CCCcEEEECCCcCcccHHHHHHHH-HHHHCCCEEEcCccccccccCCeecCCCCHHHHHHhccCchhhhc
Confidence 3445555566554 22 2233333 4567899999994 677765544 334777666665555433343
No 173
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=20.40 E-value=4.2e+02 Score=22.32 Aligned_cols=50 Identities=8% Similarity=0.205 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCC
Q psy12401 131 TVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQI 186 (255)
Q Consensus 131 t~~d~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmr 186 (255)
.+....++.+.+.+ .++||+|+.-++..- .+ ++.. +...++|||+-++-.
T Consensus 40 ~~~~~~~~~~~l~~--~~vdgiii~~~~~~~--~~-~~~~-~~~~~ipvV~~~~~~ 89 (266)
T cd06282 40 DAEREADAVETLLR--QRVDGLILTVADAAT--SP-ALDL-LDAERVPYVLAYNDP 89 (266)
T ss_pred CHHHHHHHHHHHHh--cCCCEEEEecCCCCc--hH-HHHH-HhhCCCCEEEEeccC
Confidence 34444444444332 258999998766421 12 3454 335689998876543
No 174
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=20.37 E-value=2.4e+02 Score=24.46 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhcC--CCeEEEEcCC---c--hHHHHHHHHHhhhcCCCceEEEcC
Q psy12401 135 WINIASDVFDNYEN--FDGFVILHGT---D--TLCYTAAALSFMFENLGKTVIITG 183 (255)
Q Consensus 135 ~~~La~~I~~~~~~--~dG~VVtHGT---D--TLeeTA~~Lsl~l~~~~kPVVlTG 183 (255)
+.+|.+.+++...+ +.+||+...+ | .+++..-+|.. +.+.+||||--.
T Consensus 23 ~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~~~~~l~~-~~~~~kpVia~v 77 (211)
T cd07019 23 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAA-ARAAGKPVVVSA 77 (211)
T ss_pred HHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHHHHHHHHH-HHhCCCCEEEEE
Confidence 57777777777654 6788886332 2 23344444444 446789998554
No 175
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=20.06 E-value=2.5e+02 Score=27.42 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEcCCc
Q psy12401 132 VDDWINIASDVFDNYENFDGFVILHGTD 159 (255)
Q Consensus 132 ~~d~~~La~~I~~~~~~~dG~VVtHGTD 159 (255)
++|..+|.+.+++...++|-||+|=||.
T Consensus 227 ~Dd~~~i~~~l~~a~~~~DlvIttGG~S 254 (411)
T PRK10680 227 RDDPHALRAAFIEADSQADVVISSGGVS 254 (411)
T ss_pred CCCHHHHHHHHHHhccCCCEEEEcCCCC
Confidence 5566778888887766689777775553
No 176
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.03 E-value=2.5e+02 Score=24.44 Aligned_cols=52 Identities=13% Similarity=0.093 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHHhhcCCCeEEEEcCCchHHHHHHHHHhhhcCCCceEEEcCCCCC
Q psy12401 131 TVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQIS 187 (255)
Q Consensus 131 t~~d~~~La~~I~~~~~~~dG~VVtHGTDTLeeTA~~Lsl~l~~~~kPVVlTGAmrP 187 (255)
.++...+..+.+.+ .++|||||. .+|+-.. .-.+..+. ..++|||+-++..+
T Consensus 40 d~~~~~~~i~~~~~--~~vdgiii~-~~~~~~~-~~~i~~~~-~~~iPvV~~~~~~~ 91 (272)
T cd06313 40 DAVKQVAAIENMAS--QGWDFIAVD-PLGIGTL-TEAVQKAI-ARGIPVIDMGTLIA 91 (272)
T ss_pred CHHHHHHHHHHHHH--cCCCEEEEc-CCChHHh-HHHHHHHH-HCCCcEEEeCCCCC
Confidence 55544444333322 348999995 4443211 22233322 45789999988654
Done!