RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12401
(255 letters)
>gnl|CDD|181876 PRK09461, ansA, cytoplasmic asparaginase I; Provisional.
Length = 335
Score = 221 bits (566), Expect = 2e-71
Identities = 97/205 (47%), Positives = 127/205 (61%), Gaps = 22/205 (10%)
Query: 50 RVLVIYTGGTIGMIINNDGVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYLALPGLK 109
+ V YTGGTIGM ++ G P S + + P H RP+ ++
Sbjct: 5 SIYVAYTGGTIGMQRSDQG-YIPVSGHLQRQLALMPEFH-------RPEMPDFT------ 50
Query: 110 HNKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALS 169
+ EY L+DSS+MT +DW +IA D+ NY+++DGFVILHGTDT+ YTA+ALS
Sbjct: 51 --------IHEYTPLIDSSDMTPEDWQHIADDIKANYDDYDGFVILHGTDTMAYTASALS 102
Query: 170 FMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAGNYVIPEVTVYFHNKLMRGNRTI 229
FM ENLGK VI+TGSQI + + RSDG N + +L +A NY I EVT++F+NKL RGNRT
Sbjct: 103 FMLENLGKPVIVTGSQIPLAELRSDGQTNLLNALYVAANYPINEVTLFFNNKLFRGNRTT 162
Query: 230 KTSTYEFDAFISPNCLPLVQVGIEI 254
K FDAF SPN PL++ GI I
Sbjct: 163 KAHADGFDAFASPNLPPLLEAGIHI 187
>gnl|CDD|216074 pfam00710, Asparaginase, Asparaginase.
Length = 318
Score = 217 bits (556), Expect = 4e-70
Identities = 77/205 (37%), Positives = 108/205 (52%), Gaps = 29/205 (14%)
Query: 50 RVLVIYTGGTIGMIINNDG-VLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYLALPGL 108
++L++YTGGTI M+ + G +AP S + L A+P L
Sbjct: 1 KILILYTGGTIAMVADPSGGAVAPAS---------------GEDLLA--------AVPEL 37
Query: 109 KHNKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAAL 168
+ E +DSSNMT DW+ +A + + +++DGFV+ HGTDTL TA+ L
Sbjct: 38 ADIADIEV---EQLPNIDSSNMTPADWLRLAERINEALDDYDGFVVTHGTDTLEETASFL 94
Query: 169 SFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAGNY--VIPEVTVYFHNKLMRGN 226
S M ENL K V++TG+Q P SDG +N + +L +A + V V F++KL RG
Sbjct: 95 SLMLENLDKPVVLTGAQRPADAPSSDGPENLLDALRVAASPDARGRGVLVVFNDKLHRGR 154
Query: 227 RTIKTSTYEFDAFISPNCLPLVQVG 251
R KT T DAF SPN PL +VG
Sbjct: 155 RVTKTHTSSLDAFASPNFGPLGEVG 179
>gnl|CDD|199207 cd08963, L-asparaginase_I, Type I (cytosolic) bacterial
L-asparaginase. Asparaginases (amidohydrolases, E.C.
3.5.1.1) are enzymes that catalyze the hydrolysis of
asparagine to aspartic acid and ammonia. In bacteria,
there are two classes of amidohydrolases. This model
represents type I L-asparaginases, which are highly
specific for asparagine and localized in the cytosol.
Type I L-asparaginase acts as a dimer. A conserved
threonine residue is thought to supply the nucleophile
hydroxy-group that attacks the amide bond. Many
bacterial L-asparaginases have both L-asparagine and
L-glutamine hydrolysis activities, to a different
degree, and some of them are annotated as
asparaginase/glutaminase. One example of an enzyme with
no L-glutaminase activity is the type I L-asparaginase
from Wolinella succinogenes.
Length = 316
Score = 205 bits (525), Expect = 2e-65
Identities = 78/198 (39%), Positives = 107/198 (54%), Gaps = 26/198 (13%)
Query: 50 RVLVIYTGGTIGMIINNDGVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYLALPGLK 109
++L++YTGGTI + G LAP +E + LP L
Sbjct: 2 KILLLYTGGTIASVKTEGG-LAPALT-AEELLSY---------------------LPELL 38
Query: 110 HNKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALS 169
+ + +E +DSSNMT +DW+ IA + +NY+ +DGFVI HGTDT+ YTAAALS
Sbjct: 39 EDCFIE---VEQLPNIDSSNMTPEDWLRIARAIAENYDGYDGFVITHGTDTMAYTAAALS 95
Query: 170 FMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAGNYVIPEVTVYFHNKLMRGNRTI 229
F+ +NL K V++TGSQ+ + +P SD N +L A + I V V F+ KL+RG R
Sbjct: 96 FLLQNLPKPVVLTGSQLPLGEPGSDARRNLRDALRAASSGSIRGVYVAFNGKLIRGTRAR 155
Query: 230 KTSTYEFDAFISPNCLPL 247
K T FDAF S N L
Sbjct: 156 KVRTTSFDAFESINYPLL 173
>gnl|CDD|214873 smart00870, Asparaginase, Asparaginase, found in various plant,
animal and bacterial cells. Asparaginase catalyses the
deamination of asparagine to yield aspartic acid and an
ammonium ion, resulting in a depletion of free
circulatory asparagine in plasma. The enzyme is
effective in the treatment of human malignant lymphomas,
which have a diminished capacity to produce asparagine
synthetase: in order to survive, such cells absorb
asparagine from blood plasma..- if Asn levels have been
depleted by injection of asparaginase, the lymphoma
cells die.
Length = 323
Score = 204 bits (522), Expect = 6e-65
Identities = 67/209 (32%), Positives = 99/209 (47%), Gaps = 29/209 (13%)
Query: 51 VLVIYTGGTIGMIINND-GVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYLALPGLK 109
+LV+YTGGTI M + G + P + L+ + ALP L
Sbjct: 1 ILVLYTGGTIAMKADPSTGAVGPTAG-------AEELLALLP------------ALPELA 41
Query: 110 HNKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFD--NYENFDGFVILHGTDTLCYTAAA 167
+ V E + +DSSNMT +DW+ +A + + + +DG V+ HGTDTL TA
Sbjct: 42 DDIEV-----EQVANIDSSNMTPEDWLKLAKRINEALADDGYDGVVVTHGTDTLEETAYF 96
Query: 168 LSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAGNY--VIPEVTVYFHNKLMRG 225
LS ++L K V++TG+ SDG N + ++ +A + V V F++++ R
Sbjct: 97 LSLTLDSLDKPVVLTGAMRPATALSSDGPANLLDAVRVAASPEARGRGVLVVFNDEIHRA 156
Query: 226 NRTIKTSTYEFDAFISPNCLPLVQVGIEI 254
R KT T DAF SPN PL V
Sbjct: 157 RRVTKTHTSRVDAFQSPNFGPLGYVDEGG 185
>gnl|CDD|129610 TIGR00519, asnASE_I, L-asparaginase, type I. Two related families
of asparaginase are designated type I and type II
according to the terminology in E. coli, which has both:
L-asparaginase I is a low-affinity enzyme found in the
cytoplasm, while L-asparaginase II is a high-affinity
secreted enzyme synthesized with a cleavable signal
sequence. This model describes L-asparaginases related
to type I of E. coli. Archaeal putative asparaginases
are of this type but contain an extra ~ 80 residues in a
conserved N-terminal region. These archaeal homologs are
included in this model.
Length = 336
Score = 157 bits (399), Expect = 1e-46
Identities = 68/209 (32%), Positives = 98/209 (46%), Gaps = 33/209 (15%)
Query: 51 VLVIYTGGTIGMIIN-NDGVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYLALPGLK 109
+ +I TGGTI ++ G + P E + P + D+ + AL
Sbjct: 4 ISIISTGGTIASKVDYRTGAVHPVF-TADELLSAVPELLDIANIDGE-------ALM--- 52
Query: 110 HNKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALS 169
+ S NM + W+ IA V Y+++DGFVI HGTDT+ YTAAALS
Sbjct: 53 --------------NILSENMKPEYWVEIAEAVKKEYDDYDGFVITHGTDTMAYTAAALS 98
Query: 170 FMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAGNYV------IPEVTVYFHNKLM 223
FM E K V+ TG+Q S +P SD N + ++ A Y+ + VT+ F+ +L
Sbjct: 99 FMLET-PKPVVFTGAQRSSDRPSSDAALNLLCAVRAATEYIAEVTVCMHGVTLDFNCRLH 157
Query: 224 RGNRTIKTSTYEFDAFISPNCLPLVQVGI 252
RG + K T DAF S N PL ++
Sbjct: 158 RGVKVRKAHTSRRDAFASINAPPLAEINP 186
>gnl|CDD|223330 COG0252, AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase
subunit D [Amino acid transport and metabolism /
Translation, ribosomal structure and biogenesis].
Length = 351
Score = 143 bits (363), Expect = 5e-41
Identities = 60/203 (29%), Positives = 89/203 (43%), Gaps = 26/203 (12%)
Query: 49 SRVLVIYTGGTIGMIINNDGVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYLALPGL 108
++L++ TGGTI ++ ++ E + P A+P L
Sbjct: 20 PKILILATGGTIASGTDSSTGAVTPTSGALEILALLP------------------AVPAL 61
Query: 109 KHNKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFDNY--ENFDGFVILHGTDTLCYTAA 166
+ E +DSS+MT +DW+ +A + + + DG VI HGTDT+ TA
Sbjct: 62 NIAANI---EGEQVLNIDSSDMTPEDWLRLAEAINEALDDGDVDGVVITHGTDTMEETAF 118
Query: 167 ALSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAGNYVIPEVTVYFHN--KLMR 224
LS K V++TG+ P SDG N ++ +A + V V ++ R
Sbjct: 119 FLSLTLNT-PKPVVLTGAMRPADAPSSDGPANLRNAVSVAADPKSRGVGVLVVFNDRIHR 177
Query: 225 GNRTIKTSTYEFDAFISPNCLPL 247
G R KT T FDAF SPN PL
Sbjct: 178 GVRVTKTHTSRFDAFESPNLGPL 200
>gnl|CDD|199206 cd08962, GatD, GatD subunit of archaeal Glu-tRNA amidotransferase.
GatD is involved in the alternative synthesis of
Gln-tRNA(Gln) in archaea via the transamidation of
incorrectly charged Glu-tRNA(Gln). GatD is active as a
dimer, and it provides the amino group required for this
reaction. GatD is related to bacterial L-asparaginases
(amidohydrolases), which catalyze the hydrolysis of
asparagine to aspartic acid and ammonia. This CD spans
both the L-asparaginase_like domain and an N-terminal
supplementary domain.
Length = 402
Score = 120 bits (304), Expect = 4e-32
Identities = 72/210 (34%), Positives = 100/210 (47%), Gaps = 35/210 (16%)
Query: 50 RVLVIYTGGTIGMIIN-NDGVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYLALPGL 108
+V +I TGGTI ++ G ++P + L A+P L
Sbjct: 72 KVSIISTGGTIASRVDYRTGAVSPAF--------------TAEEL--------LRAIPEL 109
Query: 109 KHNKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFDNYEN-FDGFVILHGTDTLCYTAAA 167
+ +VL ++L S NMT + W+ IA V+ + DG V+ HGTDT+ YTA+A
Sbjct: 110 LDIANIKAEVL--FNIL-SENMTPEYWVKIAEAVYKEIKEGADGVVVAHGTDTMHYTASA 166
Query: 168 LSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAGNYVIPEVTVYFHNK------ 221
LSFM E L V+ G+Q S +P SD N IA++++A + I EV V H
Sbjct: 167 LSFMLETLPVPVVFVGAQRSSDRPSSDAAMNLIAAVLVAASD-IAEVVVVMHGTTSDDYC 225
Query: 222 -LMRGNRTIKTSTYEFDAFISPNCLPLVQV 250
L RG R K T DAF S N PL +V
Sbjct: 226 LLHRGTRVRKMHTSRRDAFQSINDEPLAKV 255
>gnl|CDD|233752 TIGR02153, gatD_arch, glutamyl-tRNA(Gln) amidotransferase, subunit
D. This peptide is found only in the Archaea. It is
part of a heterodimer, with GatE (TIGR00134), that acts
as an amidotransferase on misacylated Glu-tRNA(Gln) to
produce Gln-tRNA(Gln). The analogous amidotransferase
found in bacteria is the GatABC system, although GatABC
homologs in the Archaea appear to act instead on
Asp-tRNA(Asn) [Protein synthesis, tRNA aminoacylation].
Length = 404
Score = 110 bits (277), Expect = 3e-28
Identities = 69/215 (32%), Positives = 97/215 (45%), Gaps = 43/215 (20%)
Query: 49 SRVLVIYTGGTIGMIIN-NDGVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYLALPG 107
+V +I TGGTI ++ G + P + L A+P
Sbjct: 63 PKVSIISTGGTIASRVDYETGAVYPAF--------------TAEELAR--------AVPE 100
Query: 108 LKH----NKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFDNYEN-FDGFVILHGTDTLC 162
L R ++ +L S NM + WI IA V + DG V+ HGTDT+
Sbjct: 101 LLEIANIKARAVFNIL-------SENMKPEYWIKIAEAVAKALKEGADGVVVAHGTDTMA 153
Query: 163 YTAAALSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAGNYVIPEVTVYFHNK- 221
YTAAALSFMFE L V++ G+Q S +P SD N I ++ A + I EVTV H +
Sbjct: 154 YTAAALSFMFETLPVPVVLVGAQRSSDRPSSDAALNLICAVRAATS-PIAEVTVVMHGET 212
Query: 222 ------LMRGNRTIKTSTYEFDAFISPNCLPLVQV 250
+ RG + K T DAF S N +P+ ++
Sbjct: 213 SDTYCLVHRGVKVRKMHTSRRDAFQSINDIPIAKI 247
>gnl|CDD|235245 PRK04183, PRK04183, glutamyl-tRNA(Gln) amidotransferase subunit D;
Validated.
Length = 419
Score = 101 bits (254), Expect = 7e-25
Identities = 72/213 (33%), Positives = 93/213 (43%), Gaps = 48/213 (22%)
Query: 50 RVLVIYTGGTIGMIINND---GVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYLALP 106
V ++ TGGTI + D G + P F + L A+P
Sbjct: 77 NVSILSTGGTIASKV--DYRTGAVTPA---F-----------TAEDL--------LRAVP 112
Query: 107 GL----KHNKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFDNYEN-FDGFVILHGTDTL 161
L RVL+ +L S NMT + W+ IA V++ +N DG V+ HGTDT+
Sbjct: 113 ELLDIANIRGRVLFNIL-------SENMTPEYWVEIAEAVYEEIKNGADGVVVAHGTDTM 165
Query: 162 CYTAAALSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAGNYVIPEVTVYFHNK 221
YTAAALSFM ++ G+Q S +P SD N I + +LA I EV V H
Sbjct: 166 HYTAAALSFML-KTPVPIVFVGAQRSSDRPSSDAAMNLICA-VLAATSDIAEVVVVMHGT 223
Query: 222 -------LMRGNRTIKTSTYEFDAFISPNCLPL 247
L RG R K T DAF S N PL
Sbjct: 224 TSDDYCALHRGTRVRKMHTSRRDAFQSINDKPL 256
>gnl|CDD|199205 cd00411, L-asparaginase_like, Bacterial L-asparaginases and related
enzymes. Asparaginases (amidohydrolases, E.C. 3.5.1.1)
are dimeric or tetrameric enzymes that catalyze the
hydrolysis of asparagine to aspartic acid and ammonia.
In bacteria, there are two classes of amidohydrolases,
one highly specific for asparagine and localized to the
periplasm (type II L-asparaginase), and a second
(asparaginase- glutaminase) present in the cytosol (type
I L-asparaginase) that hydrolyzes both asparagine and
glutamine with similar specificities and has a lower
affinity for its substrate. Bacterial L-asparaginases
(type II) are potent antileukemic agents and have been
used in the treatment of acute lymphoblastic leukemia
(ALL). A conserved threonine residue is thought to
supply the nucleophile hydroxy-group that attacks the
amide bond. Many bacterial L-asparaginases have both
L-asparagine and L-glutamine hydrolysis activities, to a
different degree, and some of them are annotated as
asparaginase/glutaminase. This wider family also
includes a subunit of an archaeal Glu-tRNA
amidotransferase.
Length = 320
Score = 93.0 bits (231), Expect = 4e-22
Identities = 57/204 (27%), Positives = 89/204 (43%), Gaps = 26/204 (12%)
Query: 50 RVLVIYTGGTIGMIINNDGVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYLALPGLK 109
+ ++ TGGTI + ++ A + V+ L A+P LK
Sbjct: 2 NITILATGGTIAGVGDSATYSAYVAGALG-----------VEKLIK--------AVPELK 42
Query: 110 HNKRVLYKVLEYDSLLDSSNMTVDDWINIASDVF-DNYENFDGFVILHGTDTLCYTAAAL 168
V + L + S ++T DDW+ +A +V + DG VI HGTDT TA L
Sbjct: 43 ELANVKGEQL---MNIASEDITPDDWLKLAKEVAKLLDSDVDGIVITHGTDTXEETAYFL 99
Query: 169 SFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAGN--YVIPEVTVYFHNKLMRGN 226
S +N K V++ G+ +DG N ++ +A + V V ++K+ G
Sbjct: 100 SLTLKN-DKPVVLVGAMRPSTAMSADGPFNLYNAVRVAKDKDSRGRGVLVVMNDKVHSGR 158
Query: 227 RTIKTSTYEFDAFISPNCLPLVQV 250
KT+T FDAF S N PL ++
Sbjct: 159 DVSKTNTSGFDAFRSINYGPLGEI 182
>gnl|CDD|199208 cd08964, L-asparaginase_II, Type II (periplasmic) bacterial
L-asparaginase. Asparaginases (amidohydrolases, E.C.
3.5.1.1) are enzymes that catalyze the hydrolysis of
asparagine to aspartic acid and ammonia. In bacteria,
there are two classes of amidohydrolases. This model
represents type II L-asparaginases, which tend to be
highly specific for asparagine and localized to the
periplasm. They are potent antileukemic agents and have
been used in the treatment of acute lymphoblastic
leukemia (ALL), but not without severe side effects.
Tumor cells appear to have a heightened dependence on
exogenous L-aspartate, and depleting their surroundings
of L-aspartate may starve cancerous ALL cells. Type II
L-asparaginase acts as a tetramer, which is actually a
dimer of two tightly bound dimers. A conserved threonine
residue is thought to supply the nucleophile
hydroxy-group that attacks the amide bond. Many
bacterial L-asparaginases have both L-asparagine and
L-glutamine hydrolysis activities, to a different
degree, and some of them are annotated as
asparaginase/glutaminase.
Length = 319
Score = 92.2 bits (230), Expect = 6e-22
Identities = 61/206 (29%), Positives = 94/206 (45%), Gaps = 37/206 (17%)
Query: 50 RVLVIYTGGTIGMIINNDGVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYLALPGLK 109
R+ V+ TGGTI ++ G A + +E + A+PGL
Sbjct: 2 RIAVLATGGTIAGTADSSGAYAAPTLSGEELLA---------------------AVPGLA 40
Query: 110 HNKRVLYKVLEYDSLLDSSNMTVDDWINIA---SDVFDNYENFDGFVILHGTDTLCYTAA 166
V +V + S L SS+MT DW+ +A ++ + + DG V+ HGTDTL TA
Sbjct: 41 DVADV--EVEQV-SNLPSSDMTPADWLALAARVNEALAD-PDVDGVVVTHGTDTLEETAY 96
Query: 167 ALSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAGNYVIPE-----VTVYFHNK 221
L + + K V++TG+ P +DG N + ++ +A + PE V V F+++
Sbjct: 97 FLD-LTLDSDKPVVLTGAMRPADAPSADGPANLLDAVRVAAS---PEARGRGVLVVFNDE 152
Query: 222 LMRGNRTIKTSTYEFDAFISPNCLPL 247
+ KT T DAF SP PL
Sbjct: 153 IHAARDVTKTHTTSLDAFASPGFGPL 178
>gnl|CDD|129611 TIGR00520, asnASE_II, L-asparaginase, type II. Two related
families of asparaginase (L-asparagine amidohydrolase,
EC 3.5.1.1) are designated type I and type II according
to the terminology in E. coli, which has both:
L-asparaginase I is a low-affinity enzyme found in the
cytoplasm, while L-asparaginase II is a high-affinity
periplasmic enzyme synthesized with a cleavable signal
sequence. This model describes L-asparaginases related
to type II of E. coli. Both the cytoplasmic and the cell
wall asparaginases of Saccharomyces cerevisiae belong to
this set. Members of this set from Acinetobacter
glutaminasificans and Pseudomonas fluorescens are
described as having both glutaminase and asparaginase
activitities. All members are homotetrameric [Energy
metabolism, Amino acids and amines].
Length = 349
Score = 46.3 bits (110), Expect = 5e-06
Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 14/147 (9%)
Query: 104 ALPGLKHNKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFDNYENFD--GFVILHGTDTL 161
A+P LK + E + S +M + + +A + + + D G VI HGTDTL
Sbjct: 62 AVPSLKDIANIKG---EQIVNVGSQDMNEEVLLKLAKGINELLASDDYDGIVITHGTDTL 118
Query: 162 CYTAAALSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAGNYVIPE-----VTV 216
TA L K V+I G+ +DG N ++ +A N P+ V V
Sbjct: 119 EETAYFLDLTV-KSDKPVVIVGAMRPSTSVSADGPMNLYNAVSVAAN---PKSAGRGVLV 174
Query: 217 YFHNKLMRGNRTIKTSTYEFDAFISPN 243
++++ G KT+T D F S N
Sbjct: 175 VLNDRIASGRYVTKTNTTSLDTFKSRN 201
>gnl|CDD|182958 PRK11096, ansB, L-asparaginase II; Provisional.
Length = 347
Score = 46.2 bits (110), Expect = 6e-06
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Query: 127 SSNMTVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQI 186
S +M + W+ +A + + + DGFVI HGTDT+ TA L + K V++ G+
Sbjct: 79 SQDMNDEVWLTLAKKINTDCDKTDGFVITHGTDTMEETAYFLD-LTVKCDKPVVLVGAMR 137
Query: 187 SIFQPRSDGVDNFIASLILAG--NYVIPEVTVYFHNKLMRGNRTIKTSTYEFDAFISPNC 244
+DG N +++ A V V ++ ++ G KT+T + F SPN
Sbjct: 138 PSTAMSADGPLNLYNAVVTAADKASANRGVLVAMNDTVLDGRDVTKTNTTDVQTFQSPNY 197
Query: 245 LPL 247
PL
Sbjct: 198 GPL 200
>gnl|CDD|198309 cd03200, GST_C_AIMP2, Glutathione S-transferase C-terminal-like,
alpha helical domain of Aminoacyl tRNA synthetase
complex-Interacting Multifunctional Protein 2.
Glutathione S-transferase (GST) C-terminal domain
family, Aminoacyl tRNA synthetase complex-Interacting
Multifunctional Protein (AIMP) 2 subfamily; AIMPs are
non-enzymatic cofactors that play critical roles in the
assembly and formation of a macromolecular multi-tRNA
synthetase protein complex that functions as a molecular
hub to coordinate protein synthesis. There are three
AIMPs, named AIMP1-3, which play diverse regulatory
roles. AIMP2, also called p38 or JTV-1, contains a
C-terminal domain with similarity to the C-terminal
alpha helical domain of GSTs. It plays an important role
in the control of cell fate via antiproliferative (by
enhancing the TGF-beta signal) and proapoptotic
(activation of p53 and TNF-alpha) activities. Its roles
in the control of cell proliferation and death suggest
that it is a potent tumor suppressor. AIMP2 heterozygous
mice with lower than normal expression of AIMP2 show
high susceptibility to tumorigenesis. AIMP2 is also a
substrate of Parkin, an E3 ubiquitin ligase that is
involved in the ubiquitylation and proteasomal
degradation of its substrates. Mutations in the Parkin
gene is found in 50% of patients with
autosomal-recessive early-onset parkinsonism. The
accumulation of AIMP2, due to impaired Parkin function,
may play a role in the pathogenesis of Parkinson's
disease.
Length = 96
Score = 28.6 bits (64), Expect = 0.96
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 15/77 (19%)
Query: 113 RVLYKVLEYDSLLDSSNMT-VDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFM 171
R L+++L +S D N T +D W++ A F +L G+ AA L +
Sbjct: 2 RFLFRLLGDESD-DPVNATLIDSWVDTAI-----------FQLLEGSSK--EKAAVLRAL 47
Query: 172 FENLGKTVIITGSQISI 188
LG++ + GS+ ++
Sbjct: 48 NSALGRSPWLVGSEPTV 64
>gnl|CDD|236732 PRK10662, PRK10662, beta-lactam binding protein AmpH; Provisional.
Length = 378
Score = 29.6 bits (67), Expect = 1.8
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 174 NLGKTVIITGSQISIFQPRSDGVDNFIASLI 204
N+G V++T S ++ F SDGV++ + L
Sbjct: 345 NIGVFVVVTRSPLTRFSNMSDGVNDLVTELS 375
>gnl|CDD|107292 cd06297, PBP1_LacI_like_12, Ligand-binding domain of
uncharacterized transcription regulators from Thermus
thermophilus and close homologs. Ligand-binding domain
of uncharacterized transcription regulators from Thermus
thermophilus and close homologs from other bacteria.
This group belongs to the the LacI-GalR family
repressors that are composed of two functional domains:
an N-terminal HTH (helix-turn-helix) domain, which is
responsible for the DNA-binding specificity, and a
C-terminal ligand-binding domain, which is homologous to
the sugar-binding domain of ABC-type transport systems
that contain the type I periplasmic binding protein-like
fold. As also observed in the periplasmic binding
proteins, the C-terminal domain of the bacterial
transcription repressor undergoes a conformational
change upon ligand binding which in turn changes the DNA
binding.
Length = 269
Score = 27.5 bits (61), Expect = 6.0
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 210 VIPEVTVYFHNKLMRGNRT 228
++P V F+ +L+ G
Sbjct: 5 LLPVVATEFYRRLLEGIEG 23
>gnl|CDD|200573 cd10949, CE4_BsPdaB_like, Putative catalytic NodB homology domain
of Bacillus subtilis putative polysaccharide deacetylase
PdaB, and its bacterial homologs. The Bacillus subtilis
genome contains six polysaccharide deacetylase gene
homologs: pdaA, pdaB (previously known as ybaN), yheN,
yjeA, yxkH and ylxY. This family is represented by the
putative polysaccharide deacetylase PdaB encoded by the
pdaB gene on sporulation of Bacillus subtilis. Although
its biochemical properties remain to be determined, the
PdaB (YbaN) protein is essential for maintaining spores
after the late stage of sporulation and is highly
conserved in spore-forming bacteria. The glycans of the
spore cortex may be candidate PdaB substrates. Based on
sequence similarity, the family members are classified
as carbohydrate esterase 4 (CE4) superfamily members.
However, the classical His-His-Asp zinc-binding motif of
CE4 esterases is missing in this family.
Length = 192
Score = 27.4 bits (61), Expect = 6.7
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 111 NKRVLYKVLEYDSLLDSSNMTVDDWIN-----IASDVFDNYENFDGFVILHGTDTLCYTA 165
NKRVL + ++ DW N I V + D V++H +D+ TA
Sbjct: 108 NKRVLKLAESLGYTVVHWSVNSLDWKNPGVEAIVDRVMKRVKPGD-IVLMHASDSAKQTA 166
Query: 166 AALSFMFENL 175
AL + E L
Sbjct: 167 EALPIILEGL 176
>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated.
Length = 533
Score = 27.2 bits (61), Expect = 9.4
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 51 VLVIYTGGTIGM 62
+ ++YTGGT GM
Sbjct: 166 LYLLYTGGTTGM 177
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.137 0.399
Gapped
Lambda K H
0.267 0.0824 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,009,216
Number of extensions: 1234253
Number of successful extensions: 1089
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1060
Number of HSP's successfully gapped: 29
Length of query: 255
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 160
Effective length of database: 6,723,972
Effective search space: 1075835520
Effective search space used: 1075835520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (25.9 bits)