RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12401
(255 letters)
>2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A
2p2n_A 3ntx_A* 2ocd_A
Length = 358
Score = 275 bits (705), Expect = 2e-92
Identities = 93/208 (44%), Positives = 124/208 (59%), Gaps = 22/208 (10%)
Query: 48 ESRVLVIYTGGTIGMIINNDGVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYLALPG 107
+ + V YTGGTIGM + G P S + + P H +
Sbjct: 23 KKSIYVAYTGGTIGMQRSEQG-YIPVSGHLQRQLALMPEFHRPEMPD------------- 68
Query: 108 LKHNKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAA 167
+ + EY L+DSS+MT +DW +IA D+ +Y+++DGFVILHGTDT+ YTA+A
Sbjct: 69 --------FTIHEYTPLMDSSDMTPEDWQHIAEDIKAHYDDYDGFVILHGTDTMAYTASA 120
Query: 168 LSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAGNYVIPEVTVYFHNKLMRGNR 227
LSFM ENLGK VI+TGSQI + + RSDG N + +L +A NY I EVT++F+N+L RGNR
Sbjct: 121 LSFMLENLGKPVIVTGSQIPLAELRSDGQINLLNALYVAANYPINEVTLFFNNRLYRGNR 180
Query: 228 TIKTSTYEFDAFISPNCLPLVQVGIEID 255
T K FDAF SPN PL++ GI I
Sbjct: 181 TAKAHADGFDAFASPNLPPLLEAGIHIR 208
>1wls_A L-asparaginase; structural genomics, hydrolase; 2.16A {Pyrococcus
horikoshii} PDB: 1wnf_A
Length = 328
Score = 254 bits (650), Expect = 2e-84
Identities = 54/205 (26%), Positives = 89/205 (43%), Gaps = 28/205 (13%)
Query: 50 RVLVIYTGGTIGMIINNDGVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYLALPGLK 109
R+L++ GGTI + G + S+ L L G+
Sbjct: 2 RILILGMGGTIASVKGERGYESA------------------------LSVSKILKLAGIS 37
Query: 110 HNKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALS 169
++ + L +DS+ + DW +A ++ +DG VI HGTDT+ Y+A+ LS
Sbjct: 38 SEAKIEARDL---MNVDSTLIQPSDWERLAKEIEKEVWEYDGIVITHGTDTMAYSASMLS 94
Query: 170 FMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAGNYVIPEVTVYFHNKLMRGNRTI 229
FM N +++TGS + I + SD N +L I + + F+ K+M G R
Sbjct: 95 FMLRNPPIPIVLTGSMLPITEKNSDAPFNLRTALEFVK-LGIRGIYIAFNGKVMLGVRAS 153
Query: 230 KTSTYEFDAFISPNCLPLVQVGIEI 254
K + FDAF S N + ++ +
Sbjct: 154 KIRSMGFDAFESINYPNVAEIKDDK 178
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure,
asparaginase 1 family, GATD subfamily, lyase; 3.00A
{Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Length = 438
Score = 223 bits (571), Expect = 3e-71
Identities = 72/256 (28%), Positives = 108/256 (42%), Gaps = 37/256 (14%)
Query: 11 ENGSNGIHNDDNGHDEGNGESQSSAEKFRFKNQTESLES--RVLVIYTGGTIGMIINND- 67
ENG N + E + F+ E V +I TGGTI I+ +
Sbjct: 52 ENGYNIGIALEKIRRIEVLERAKVKPEVHFEALIEGKPGLPEVTIIGTGGTIASRIDYET 111
Query: 68 GVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYLALPGLKHNKRVLYKVLEYDSLLDS 127
G + P +E + P + +V ++ + + S
Sbjct: 112 GAVYPAFT-AEELAKALPEIFEVANVK------------------------PKLLFNIFS 146
Query: 128 SNMTVDDWINIASDVFDNYENFD-GFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQI 186
+M W+ IA +V + D G V+ HGTDT+ YTAAALSFM NLGK V++ G+Q
Sbjct: 147 EDMKPKHWVKIAHEVAKALNSGDYGVVVAHGTDTMGYTAAALSFMLRNLGKPVVLVGAQR 206
Query: 187 SIFQPRSDGVDNFIASLILAGNYVIPEVTVYFHNKL-------MRGNRTIKTSTYEFDAF 239
S +P SD N I S+ +A + + EV V H + RG + K T DAF
Sbjct: 207 SSDRPSSDAAMNLICSVRMATSE-VAEVMVVMHGETGDTYCLAHRGTKVRKMHTSRRDAF 265
Query: 240 ISPNCLPLVQVGIEID 255
S N +P+ ++ +
Sbjct: 266 RSINDVPIAKIWPNGE 281
>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA
complex; 3.15A {Methanothermobacterthermautotrophicus}
SCOP: b.38.3.1 c.88.1.1
Length = 435
Score = 212 bits (543), Expect = 4e-67
Identities = 69/253 (27%), Positives = 99/253 (39%), Gaps = 35/253 (13%)
Query: 11 ENGSN-GIHNDDNGHDEGNGESQSSAEKFRFKNQTESLESRVLVIYTGGTIGMIIN-NDG 68
ENG N G+ D + S+ E + + V +I TGGT+ II+ G
Sbjct: 52 ENGYNIGVEISDARIELLEKGSEPRIELPPVEAAEDPELPDVSIISTGGTVASIIDYRTG 111
Query: 69 VLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYLALPGLKHNKRVLYKVLEYDSLLDSS 128
+ P + +R NP + D+ +R + S
Sbjct: 112 AVHPAFT-ADDLLRANPELLDIANIR------------------------GRAVFNILSE 146
Query: 129 NMTVDDWINIASDVFDNY-ENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQIS 187
NM + W+ A V+ + DG V+ HGTDT+ YT+AALSFM V+ TG+Q S
Sbjct: 147 NMKPEYWVETARAVYGEIKDGADGVVVAHGTDTMHYTSAALSFMLRT-PVPVVFTGAQRS 205
Query: 188 IFQPRSDGVDNFIASLILA------GNYVIPEVTVYFHNKLMRGNRTIKTSTYEFDAFIS 241
+P SD N S+ A + L RG + K T D F S
Sbjct: 206 SDRPSSDASLNIQCSVRAATSEIAEVTVCMHATMDDLSCHLHRGVKVRKMHTSRRDTFRS 265
Query: 242 PNCLPLVQVGIEI 254
N LPL +V +
Sbjct: 266 MNALPLAEVTPDG 278
>1nns_A L-asparaginase II; amidrohydrolase, crystallographic comparison
hydrolase; 1.95A {Escherichia coli} SCOP: c.88.1.1 PDB:
3eca_A 1ho3_A 1jaz_A 1ihd_A 1jja_A 4eca_A*
Length = 326
Score = 163 bits (414), Expect = 6e-49
Identities = 49/200 (24%), Positives = 81/200 (40%), Gaps = 25/200 (12%)
Query: 50 RVLVIYTGGTIGMIINNDGVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYLALPGLK 109
+ ++ TGGTI ++ K V+ L N A+P LK
Sbjct: 3 NITILATGGTIAGGGDSATKSNYTVGKV-----------GVENLVN--------AVPQLK 43
Query: 110 HNKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALS 169
V + + + S +M + W+ +A + + + DGFVI HGTDT+ TA L
Sbjct: 44 DIANVKGEQV---VNIGSQDMNDNVWLTLAKKINTDCDKTDGFVITHGTDTMEETAYFLD 100
Query: 170 FMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAGNY--VIPEVTVYFHNKLMRGNR 227
K V++ G+ +DG N +++ A + V V ++ ++ G
Sbjct: 101 LTV-KCDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAADKASANRGVLVVMNDTVLDGRD 159
Query: 228 TIKTSTYEFDAFISPNCLPL 247
KT+T + F S N PL
Sbjct: 160 VTKTNTTDVATFKSVNYGPL 179
>3nxk_A Cytoplasmic L-asparaginase; structural genomics, center for
structural genomics of infec diseases, csgid,
alpha-beta-alpha sandwich; 2.40A {Campylobacter jejuni
subsp}
Length = 334
Score = 160 bits (406), Expect = 1e-47
Identities = 49/202 (24%), Positives = 86/202 (42%), Gaps = 27/202 (13%)
Query: 50 RVLVIYTGGTIGMIINNDGVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYL-ALPGL 108
R+ ++ TGGTI I++ Y D + A+P +
Sbjct: 10 RIAILGTGGTIAGFIDSTIATT-------------------GYAAGAIDIDVLIKAVPQI 50
Query: 109 KHNKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFDNYEN-FDGFVILHGTDTLCYTAAA 167
+ + ++ + + +DSSNM + W+ +A + + DG VI HGTDT+ TA
Sbjct: 51 RDLADISWEQI---ANIDSSNMCDEIWLRLAKKIAKLFAEGIDGVVITHGTDTMEETAYF 107
Query: 168 LSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAGN--YVIPEVTVYFHNKLMRG 225
L+ ++ K V++ G+ +DG N ++ L N V V ++K++
Sbjct: 108 LNLTIKS-DKPVVLVGAMRPSTAISADGPKNLYNAVALVVNKEAKNKGVMVAINDKILSA 166
Query: 226 NRTIKTSTYEFDAFISPNCLPL 247
+KT + DAF SP+ L
Sbjct: 167 RGVVKTHSLNVDAFSSPDFGDL 188
>1wsa_A Asparaginase, asparagine amidohydrolase; periplasmic; 2.20A
{Wolinella succinogenes} SCOP: c.88.1.1
Length = 330
Score = 158 bits (403), Expect = 3e-47
Identities = 43/202 (21%), Positives = 80/202 (39%), Gaps = 27/202 (13%)
Query: 50 RVLVIYTGGTIGMIINNDGVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYLALPGLK 109
+V ++ TGGTI + + + VD L A+P +
Sbjct: 5 QVTILATGGTIAGSGESSVKSSYSAGAV-----------TVDKLLA--------AVPAIN 45
Query: 110 HNKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFD--NYENFDGFVILHGTDTLCYTAAA 167
+ + + S + S MT W+ +A V + + + +I HGTDT+ TA
Sbjct: 46 DLATIKGEQI---SSIGSQEMTGKVWLKLAKRVNELLAQKETEAVIITHGTDTMEETAFF 102
Query: 168 LSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAGNYVI--PEVTVYFHNKLMRG 225
L+ ++ K V++ G+ +DG N ++ +A N V + ++++
Sbjct: 103 LNLTVKS-QKPVVLVGAMRPGSSMSADGPMNLYNAVNVAINKASTNKGVVIVMNDEIHAA 161
Query: 226 NRTIKTSTYEFDAFISPNCLPL 247
K +T +AF SPN +
Sbjct: 162 REATKLNTTAVNAFASPNTGKI 183
>2wlt_A L-asparaginase; hydrolase; 1.40A {Helicobacter pylori} PDB: 2wt4_A
Length = 332
Score = 156 bits (397), Expect = 2e-46
Identities = 43/202 (21%), Positives = 79/202 (39%), Gaps = 27/202 (13%)
Query: 50 RVLVIYTGGTIGMIINNDGVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYLALPGLK 109
+ ++ TGGTI + + + +S + V L A+P L
Sbjct: 7 TIALLATGGTIAGSGVDASLGSYKSGEL-----------GVKELLK--------AIPSLN 47
Query: 110 HNKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFDNYEN--FDGFVILHGTDTLCYTAAA 167
R+ + + S + S +M + W +A + ++ G VI HGTDTL +A
Sbjct: 48 KIARIQGEQV---SNIGSQDMNEEIWFKLAQRAQELLDDSRIQGVVITHGTDTLEESAYF 104
Query: 168 LSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAGN--YVIPEVTVYFHNKLMRG 225
L+ + + K V++ G+ + +DG N ++ +A N V V + +
Sbjct: 105 LNLVLHS-TKPVVLVGAMRNASSLSADGALNLYEAVSVAVNEKSANKGVLVVMDDTIFSV 163
Query: 226 NRTIKTSTYEFDAFISPNCLPL 247
+KT T F + N +
Sbjct: 164 REVVKTHTTHVSTFKALNSGAI 185
>1o7j_A L-asparaginase; atomic resolution, hydrolase; 1.0A {Erwinia
chrysanthemi} SCOP: c.88.1.1 PDB: 1hfj_A 1hfk_A* 1hg0_A
1hg1_A 1hfw_A* 1jsr_A* 1jsl_A 2gvn_A 1zcf_A 2hln_A*
2jk0_A
Length = 327
Score = 149 bits (378), Expect = 1e-43
Identities = 41/203 (20%), Positives = 73/203 (35%), Gaps = 28/203 (13%)
Query: 50 RVLVIYTGGTIGMIINNDGVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYL-ALPGL 108
++++ TGGTI Y + A+P +
Sbjct: 6 NIVILATGGTIAGSAATGTQT-------------------TGYKAGALGVDTLINAVPEV 46
Query: 109 KHNKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFD--NYENFDGFVILHGTDTLCYTAA 166
K V + S + S NMT D + ++ V + ++ DG VI HGTDT+ +A
Sbjct: 47 KKLANVKGEQF---SNMASENMTGDVVLKLSQRVNELLARDDVDGVVITHGTDTVEESAY 103
Query: 167 ALSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILA--GNYVIPEVTVYFHNKLMR 224
L ++ K V+ + +DG N + ++ +A V V ++++
Sbjct: 104 FLHLTVKS-DKPVVFVAAMRPATAISADGPMNLLEAVRVAGDKQSRGRGVMVVINDRIGS 162
Query: 225 GNRTIKTSTYEFDAFISPNCLPL 247
KT+ D F + L
Sbjct: 163 ARYITKTNASTLDTFRANEEGYL 185
>4pga_A Glutaminase-asparaginase; bacterial amidohydrolase; 1.70A
{Pseudomonas SP} SCOP: c.88.1.1 PDB: 1djp_A* 1djo_A*
3pga_1
Length = 337
Score = 148 bits (377), Expect = 2e-43
Identities = 43/199 (21%), Positives = 78/199 (39%), Gaps = 28/199 (14%)
Query: 50 RVLVIYTGGTIGMIINNDGVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYL-ALPGL 108
V+++ TGGTI + Y + + + +P L
Sbjct: 11 NVVILATGGTIAGAGASAANS-------------------ATYQAAKVGVDKLIAGVPEL 51
Query: 109 KHNKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFDNYE--NFDGFVILHGTDTLCYTAA 166
V + + + S ++T DD + + V + + + DG VI HGTDTL TA
Sbjct: 52 ADLANVRGEQV---MQIASESITNDDLLKLGKRVAELADSNDVDGIVITHGTDTLEETAY 108
Query: 167 ALSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAGNY--VIPEVTVYFHNKLMR 224
L+ + K +++ GS +DG+ N ++ +A N V V ++++
Sbjct: 109 FLNLVQ-KTDKPIVVVGSMRPGTAMSADGMLNLYNAVAVASNKDSRGKGVLVTMNDEIQS 167
Query: 225 GNRTIKTSTYEFDAFISPN 243
G K+ + +AF S
Sbjct: 168 GRDVSKSINIKTEAFKSAW 186
>1agx_A Glutaminase-asparaginase; bacterial amidohydrolase; 2.90A
{Acinetobacter glutaminasificans} SCOP: c.88.1.1
Length = 331
Score = 143 bits (363), Expect = 2e-41
Identities = 39/199 (19%), Positives = 74/199 (37%), Gaps = 28/199 (14%)
Query: 50 RVLVIYTGGTIGMIINNDGVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYL-ALPGL 108
V+++ TGGTI + + Y + + A+P +
Sbjct: 3 NVVIVATGGTIAGAGASST-------------------NSATYSAAKVPVDALIKAVPQV 43
Query: 109 KHNKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFD--NYENFDGFVILHGTDTLCYTAA 166
+ + S ++T + +++A V D + +G VI HGTDT+ TA
Sbjct: 44 NDLANITGIQA---LQVASESITDKELLSLARQVNDLVKKPSVNGVVITHGTDTMEETAF 100
Query: 167 ALSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAGN--YVIPEVTVYFHNKLMR 224
L+ + + K +++ GS +DG N +++ LA + V V ++ +
Sbjct: 101 FLNLVV-HTDKPIVLVGSMRPSTALSADGPLNLYSAVALASSNEAKNKGVMVLMNDSIFA 159
Query: 225 GNRTIKTSTYEFDAFISPN 243
K AF+S
Sbjct: 160 ARDVTKGINIHTHAFVSQW 178
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural
genomics center for infectious hydrolase; 1.70A
{Mycobacterium smegmatis} PDB: 3ijf_X
Length = 150
Score = 31.7 bits (72), Expect = 0.10
Identities = 15/105 (14%), Positives = 31/105 (29%), Gaps = 8/105 (7%)
Query: 108 LKHNKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFDN----YENFDGFVILHGTDTLCY 163
+ H+ LE + S + + + A +V + Y F D
Sbjct: 1 MAHHHHHHMGTLEAQTQGPGSMVNWNALRSKAIEVSRHAYAPYSGFPVGAAALVDDGRTV 60
Query: 164 TAAALSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAGN 208
T + EN+ + + + S G +A + +
Sbjct: 61 TGCNV----ENVSYGLGLCAECAVVCALHSGGGGRLVALSCVGPD 101
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.16
Identities = 6/34 (17%), Positives = 10/34 (29%), Gaps = 16/34 (47%)
Query: 41 KNQTESLESRVLVIYTGGTIGMIINNDGVLAPQS 74
K + L++ L +Y A S
Sbjct: 19 KQALKKLQAS-LKLY---------------ADDS 36
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO
proteins, formins, armadillo repeat, G-protein, GTPase,
alternative splicing; HET: GNP; 2.70A {Mus musculus}
PDB: 1z2c_B*
Length = 383
Score = 27.9 bits (61), Expect = 3.6
Identities = 28/180 (15%), Positives = 57/180 (31%), Gaps = 39/180 (21%)
Query: 17 IHNDDNGHD---EGNGESQSSAEKFRFKNQTESLESRVLVIYTGGTIGMIINNDGVLAPQ 73
+ ++ ++ E E E RF+ + L+S + G + +I
Sbjct: 192 LPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLI---------- 241
Query: 74 SNKFKENIRQNPLMHDVDYLRNRPDKSEYLALPGLKHNKRVLYKVLEYDSLLDSSNMTVD 133
N L+ + L R + R L +L +
Sbjct: 242 ----------NALITPAEELDFR-------------VHIRSELMRLGLHQVLQELREIEN 278
Query: 134 DWINIASDVFDNYENFDGFVILHGTDTLCYTAAALSFMFENLGKTVIITGSQ---ISIFQ 190
+ + + VFD + D F + D + +F+ + TV + ++ +SI Q
Sbjct: 279 EDMKVQLCVFDEQGDEDFFDLKGRLDDIRMEMDDFGEVFQIILNTVKDSKAEPHFLSILQ 338
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG,
PRK04182 class ME structural genomics, protein structure
initiative; 2.20A {Eubacterium ventriosum}
Length = 201
Score = 26.9 bits (59), Expect = 5.5
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 121 YDSLLDSSNMTVDDWINIASDVFDNYEN 148
YD + + VD ++ D+ +N
Sbjct: 174 YDICIKIGKVDVDTATDMIIKYIDSRDN 201
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.9 bits (59), Expect = 9.5
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 5/33 (15%)
Query: 199 FIASLILAGNY-----VIPEVTVYFHNKLMRGN 226
+++SL+ V+ F N + GN
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN 99
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.137 0.399
Gapped
Lambda K H
0.267 0.0791 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,914,996
Number of extensions: 231892
Number of successful extensions: 637
Number of sequences better than 10.0: 1
Number of HSP's gapped: 597
Number of HSP's successfully gapped: 24
Length of query: 255
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 164
Effective length of database: 4,160,982
Effective search space: 682401048
Effective search space used: 682401048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.2 bits)