RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12401
(255 letters)
>d2ocda1 c.88.1.1 (A:2-337) Asparaginase type II {Vibrio cholerae
[TaxId: 666]}
Length = 336
Score = 172 bits (437), Expect = 6e-53
Identities = 93/206 (45%), Positives = 127/206 (61%), Gaps = 22/206 (10%)
Query: 50 RVLVIYTGGTIGMIINNDGVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYLALPGLK 109
+ + YTGGTIGM ++ G P + ++ + ++P
Sbjct: 4 HIYIAYTGGTIGMKKSDHG-YVPVAGFMEKQLA---------------------SMPEFH 41
Query: 110 HNKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALS 169
+ L+ + EYD L+DSS+MT DW IA D+ NY+ +DGFVILHGTDT+ YTA+ALS
Sbjct: 42 RPEMPLFTIHEYDPLMDSSDMTPADWQLIADDIAANYDKYDGFVILHGTDTMAYTASALS 101
Query: 170 FMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAGNYVIPEVTVYFHNKLMRGNRTI 229
FMFENLGK VI+TGSQI + RSDG N + +L +A NY I EVT++F+N+LMRGNR+
Sbjct: 102 FMFENLGKPVIVTGSQIPLADLRSDGQANLLNALHVAANYPINEVTLFFNNRLMRGNRSR 161
Query: 230 KTSTYEFDAFISPNCLPLVQVGIEID 255
K+ F AF SPN PL++ GI I+
Sbjct: 162 KSHADGFSAFSSPNLPPLLEAGINIE 187
>d2d6fa2 c.88.1.1 (A:84-435) Glutamyl-tRNA(Gln) amidotransferase
subunit D, GatD {Methanobacterium thermoautotrophicum
[TaxId: 145262]}
Length = 352
Score = 139 bits (350), Expect = 6e-40
Identities = 61/212 (28%), Positives = 86/212 (40%), Gaps = 34/212 (16%)
Query: 50 RVLVIYTGGTIGMIIN-NDGVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYLALPGL 108
V +I TGGT+ II+ G + P + +R NP + D+ +R
Sbjct: 9 DVSIISTGGTVASIIDYRTGAVHPAFT-ADDLLRANPELLDIANIR-------------- 53
Query: 109 KHNKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFDNY-ENFDGFVILHGTDTLCYTAAA 167
+ S NM + W+ A V+ + DG V+ HGTDT+ YT+AA
Sbjct: 54 ----------GRAVFNILSENMKPEYWVETARAVYGEIKDGADGVVVAHGTDTMHYTSAA 103
Query: 168 LSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILA------GNYVIPEVTVYFHNK 221
LSFM V+ TG+Q S +P SD N S+ A +
Sbjct: 104 LSFMLRT-PVPVVFTGAQRSSDRPSSDASLNIQCSVRAATSEIAEVTVCMHATMDDLSCH 162
Query: 222 LMRGNRTIKTSTYEFDAFISPNCLPLVQVGIE 253
L RG + K T D F S N LPL +V +
Sbjct: 163 LHRGVKVRKMHTSRRDTFRSMNALPLAEVTPD 194
>d1wsaa_ c.88.1.1 (A:) Asparaginase type II {Wolinella succinogenes
[TaxId: 844]}
Length = 328
Score = 136 bits (342), Expect = 7e-39
Identities = 43/208 (20%), Positives = 79/208 (37%), Gaps = 29/208 (13%)
Query: 50 RVLVIYTGGTIGMIINNDGVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYLA-LPGL 108
+V ++ TGGTI + Y + LA +P +
Sbjct: 3 QVTILATGGTIAGSGESSV--------------------KSSYSAGAVTVDKLLAAVPAI 42
Query: 109 KHNKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFD--NYENFDGFVILHGTDTLCYTAA 166
+ + + S + S MT W+ +A V + + + +I HGTDT+ TA
Sbjct: 43 NDLATIKGEQI---SSIGSQEMTGKVWLKLAKRVNELLAQKETEAVIITHGTDTMEETAF 99
Query: 167 ALSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAGNYVI--PEVTVYFHNKLMR 224
L+ ++ K V++ G+ +DG N ++ +A N V + ++++
Sbjct: 100 FLNLTVKS-QKPVVLVGAMRPGSSMSADGPMNLYNAVNVAINKASTNKGVVIVMNDEIHA 158
Query: 225 GNRTIKTSTYEFDAFISPNCLPLVQVGI 252
K +T +AF SPN + V
Sbjct: 159 AREATKLNTTAVNAFASPNTGKIGTVYY 186
>d1nnsa_ c.88.1.1 (A:) Asparaginase type II {Escherichia coli
[TaxId: 562]}
Length = 326
Score = 134 bits (339), Expect = 2e-38
Identities = 50/203 (24%), Positives = 81/203 (39%), Gaps = 25/203 (12%)
Query: 50 RVLVIYTGGTIGMIINNDGVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYLALPGLK 109
+ ++ TGGTI ++ K V+ L N A+P LK
Sbjct: 3 NITILATGGTIAGGGDSATKSNYTVGKV-----------GVENLVN--------AVPQLK 43
Query: 110 HNKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFDNYENFDGFVILHGTDTLCYTAAALS 169
V E + S +M + W+ +A + + + DGFVI HGTDT+ TA L
Sbjct: 44 DIANVKG---EQVVNIGSQDMNDNVWLTLAKKINTDCDKTDGFVITHGTDTMEETAYFLD 100
Query: 170 FMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAGNYVI--PEVTVYFHNKLMRGNR 227
K V++ G+ +DG N +++ A + V V ++ ++ G
Sbjct: 101 LTV-KCDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAADKASANRGVLVVMNDTVLDGRD 159
Query: 228 TIKTSTYEFDAFISPNCLPLVQV 250
KT+T + F S N PL +
Sbjct: 160 VTKTNTTDVATFKSVNYGPLGYI 182
>d1o7ja_ c.88.1.1 (A:) Asparaginase type II {Erwinia chrysanthemi
[TaxId: 556]}
Length = 325
Score = 132 bits (332), Expect = 2e-37
Identities = 42/210 (20%), Positives = 76/210 (36%), Gaps = 28/210 (13%)
Query: 50 RVLVIYTGGTIGMIINNDGVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYL-ALPGL 108
++++ TGGTI Y + A+P +
Sbjct: 4 NIVILATGGTIAGSAATGTQT-------------------TGYKAGALGVDTLINAVPEV 44
Query: 109 KHNKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFD--NYENFDGFVILHGTDTLCYTAA 166
K V + S + S NMT D + ++ V + ++ DG VI HGTDT+ +A
Sbjct: 45 KKLANVKGEQF---SNMASENMTGDVVLKLSQRVNELLARDDVDGVVITHGTDTVEESAY 101
Query: 167 ALSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAGN--YVIPEVTVYFHNKLMR 224
L ++ K V+ + +DG N + ++ +AG+ V V ++++
Sbjct: 102 FLHLTVKS-DKPVVFVAAMRPATAISADGPMNLLEAVRVAGDKQSRGRGVMVVINDRIGS 160
Query: 225 GNRTIKTSTYEFDAFISPNCLPLVQVGIEI 254
KT+ D F + L +
Sbjct: 161 ARYITKTNASTLDTFRANEEGYLGVIIGNR 190
>d1zq1a2 c.88.1.1 (A:76-438) Glutamyl-tRNA(Gln) amidotransferase
subunit D, GatD {Pyrococcus abyssi [TaxId: 29292]}
Length = 363
Score = 132 bits (333), Expect = 2e-37
Identities = 69/215 (32%), Positives = 97/215 (45%), Gaps = 35/215 (16%)
Query: 50 RVLVIYTGGTIGMIIN-NDGVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYLALPGL 108
V +I TGGTI I+ G + P + L ALP +
Sbjct: 18 EVTIIGTGGTIASRIDYETGAVYPA--------------FTAEELAK--------ALPEI 55
Query: 109 KHNKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFDNYENFD-GFVILHGTDTLCYTAAA 167
V K+L + S +M W+ IA +V + D G V+ HGTDT+ YTAAA
Sbjct: 56 FEVANVKPKLL---FNIFSEDMKPKHWVKIAHEVAKALNSGDYGVVVAHGTDTMGYTAAA 112
Query: 168 LSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAGNYVIPEVTVYFHNK------ 221
LSFM NLGK V++ G+Q S +P SD N I S+ +A + + EV V H +
Sbjct: 113 LSFMLRNLGKPVVLVGAQRSSDRPSSDAAMNLICSVRMATSE-VAEVMVVMHGETGDTYC 171
Query: 222 -LMRGNRTIKTSTYEFDAFISPNCLPLVQVGIEID 255
RG + K T DAF S N +P+ ++ +
Sbjct: 172 LAHRGTKVRKMHTSRRDAFRSINDVPIAKIWPNGE 206
>d1agxa_ c.88.1.1 (A:) Glutaminase-asparaginase {Acinetobacter
glutaminasificans [TaxId: 474]}
Length = 331
Score = 127 bits (320), Expect = 9e-36
Identities = 40/212 (18%), Positives = 77/212 (36%), Gaps = 28/212 (13%)
Query: 49 SRVLVIYTGGTIGMIINNDGVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYL-ALPG 107
+ V+++ TGGTI + + Y + + A+P
Sbjct: 2 NNVVIVATGGTIAGAGASST-------------------NSATYSAAKVPVDALIKAVPQ 42
Query: 108 LKHNKRVLYKVLEYDSLLDSSNMTVDDWINIASDVFDNY--ENFDGFVILHGTDTLCYTA 165
+ + + S ++T + +++A V D + +G VI HGTDT+ TA
Sbjct: 43 VNDLANITGIQA---LQVASESITDKELLSLARQVNDLVKKPSVNGVVITHGTDTMEETA 99
Query: 166 AALSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAGN--YVIPEVTVYFHNKLM 223
L+ + + K +++ GS +DG N +++ LA + V V ++ +
Sbjct: 100 FFLNLVV-HTDKPIVLVGSMRPSTALSADGPLNLYSAVALASSNEAKNKGVMVLMNDSIF 158
Query: 224 RGNRTIKTSTYEFDAFISPNCLPLVQVGIEID 255
K AF+S V +
Sbjct: 159 AARDVTKGINIHTHAFVSQWGALGTLVEGKPY 190
>d4pgaa_ c.88.1.1 (A:) Glutaminase-asparaginase {Pseudomonas sp., 7A
[TaxId: 306]}
Length = 330
Score = 119 bits (300), Expect = 8e-33
Identities = 43/200 (21%), Positives = 79/200 (39%), Gaps = 28/200 (14%)
Query: 49 SRVLVIYTGGTIGMIINNDGVLAPQSNKFKENIRQNPLMHDVDYLRNRPDKSEYLA-LPG 107
+ V+++ TGGTI + + Y + + +A +P
Sbjct: 3 ANVVILATGGTIAGAGASAA-------------------NSATYQAAKVGVDKLIAGVPE 43
Query: 108 LKHNKRVLYKVLEYDSLLDSSNMTVDDWINIA--SDVFDNYENFDGFVILHGTDTLCYTA 165
L V + + + S ++T DD + + + + DG VI HGTDTL TA
Sbjct: 44 LADLANVRGEQV---MQIASESITNDDLLKLGKRVAELADSNDVDGIVITHGTDTLEETA 100
Query: 166 AALSFMFENLGKTVIITGSQISIFQPRSDGVDNFIASLILAGNYVI--PEVTVYFHNKLM 223
L + + K +++ GS +DG+ N ++ +A N V V ++++
Sbjct: 101 YFL-NLVQKTDKPIVVVGSMRPGTAMSADGMLNLYNAVAVASNKDSRGKGVLVTMNDEIQ 159
Query: 224 RGNRTIKTSTYEFDAFISPN 243
G K+ + +AF S
Sbjct: 160 SGRDVSKSINIKTEAFKSAW 179
>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium
[TaxId: 1404]}
Length = 261
Score = 27.8 bits (61), Expect = 1.3
Identities = 9/15 (60%), Positives = 13/15 (86%), Gaps = 1/15 (6%)
Query: 171 MFENL-GKTVIITGS 184
M+++L GK V+ITGS
Sbjct: 1 MYKDLEGKVVVITGS 15
>d2i71a1 e.72.1.1 (A:1-377) Hypothetical protein SSO1389 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 377
Score = 26.0 bits (57), Expect = 4.8
Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 5/74 (6%)
Query: 90 VDYLRNRPDKSEYLALPGLKHNKRVLYKVLEY-DSLLDSSNMTVDDWINIASDVFDNYEN 148
V Y + +++ L+ +V V+ S+ D N D+ + + N +N
Sbjct: 18 VTYEIDGEKFESNVSVLALRDLLKVDKTVVILGISVADVYNCKYADYRSCKECIIQNSKN 77
Query: 149 FDG----FVILHGT 158
G +V+
Sbjct: 78 DLGISESYVVAPNV 91
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.137 0.399
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 956,846
Number of extensions: 43576
Number of successful extensions: 187
Number of sequences better than 10.0: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 15
Length of query: 255
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 172
Effective length of database: 1,268,006
Effective search space: 218097032
Effective search space used: 218097032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.3 bits)