BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12402
(375 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|193706844|ref|XP_001945291.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Acyrthosiphon pisum]
Length = 441
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 188/372 (50%), Positives = 255/372 (68%), Gaps = 21/372 (5%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ AYSG+GY GLQ RN+G+KT+E +++ AL +T++ F Q +QF
Sbjct: 69 AILLAYSGLGYLGLQ----------RNKGVKTVEEELLLALKSKNLITDEGFEQIQTMQF 118
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
QRAARTDKGVSAL+QI+SL LPE+ +K+ IN LPEQIR+L I+RVTKGFNSKN+C+ RT
Sbjct: 119 QRAARTDKGVSALRQIISLLLPEDVDKQVINTALPEQIRVLDIRRVTKGFNSKNSCDGRT 178
Query: 122 YSYTCPTYAFATPQDTKD-DFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSR 180
YSYTCPT+AFA + T D +R+ + + ++K + G HN+HN+TSK+KP DPS R
Sbjct: 179 YSYTCPTFAFAPAETTIDFSYRIDATVIDRINEVVKSFLGCHNYHNYTSKKKPGDPSAQR 238
Query: 181 YIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD 240
Y++SF C++PF KDG+ELI+L ++GQSFMLHQIRKMVGV +AI RG D+IE+ + D
Sbjct: 239 YMVSFYCDKPFEKDGVELISLYVRGQSFMLHQIRKMVGVIIAICRGVAKHDVIERAWQPD 298
Query: 241 QFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
+ DLP+APGLGL+LE+VHYD YN K+G DGMHE L F E++ +V+EFR K+ILP ++K E
Sbjct: 299 RLDLPIAPGLGLVLEEVHYDKYNGKFGNDGMHERLDFVELNDQVSEFRAKYILPTIIKVE 358
Query: 301 ITEKPMLAWLELLADHSFETRAAKAAL----------AAANGEELQEVTDGEEEEDEEDR 350
E M WLE L H+FE R L A+ + E+ + EE+ +
Sbjct: 359 KEESSMQLWLEQLPLHTFEVRTEHRHLRTDVNEINSPGLASLQAAAELIEKEEQHAIDTN 418
Query: 351 GGVRHSNGTSLA 362
G V N ++LA
Sbjct: 419 GEVPPDNLSTLA 430
>gi|157115880|ref|XP_001658327.1| pseudouridylate synthase [Aedes aegypti]
gi|108876737|gb|EAT40962.1| AAEL007354-PA [Aedes aegypti]
Length = 455
Score = 350 bits (898), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 165/324 (50%), Positives = 230/324 (70%), Gaps = 14/324 (4%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
++ YSGV Y G+Q RN G KTIE +++ A+ K +++E++FN PQ IQF
Sbjct: 119 VIVMGYSGVNYLGMQ----------RNPGTKTIEEELLVAMLKHNWISEEAFNQPQQIQF 168
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
QRAARTDKGVSA Q+VS+KLP+ + +A+N+ LPEQIR+ ++KRVTKGFNSK+NC+ART
Sbjct: 169 QRAARTDKGVSAATQVVSIKLPDNVDIDALNKDLPEQIRVFAVKRVTKGFNSKSNCDART 228
Query: 122 YSYTCPTYAFATPQDTKD--DFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCS 179
Y+YT PT AFA +D D +R+ ++ ++ LK +EGT NFHNFTS+++ +DPS
Sbjct: 229 YTYTLPTMAFALHEDKVDMESYRVPEERLKVVEETLKLFEGTKNFHNFTSRKEFIDPSSK 288
Query: 180 RYIMSFDCEQPFVKDG--LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTF 237
R+IMSF+CE PFV +G +E TLKIKGQSFMLHQIRKMVG+ +A+ RG T ++ I K F
Sbjct: 289 RFIMSFECEAPFVPEGSTVEFATLKIKGQSFMLHQIRKMVGLTLAVVRGLTPQETIVKAF 348
Query: 238 GLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLV 297
++ +P APGLGL+L ++HY+ YN +YG+DG HE+L F + ++++ EF K I +V
Sbjct: 349 EEQRYGVPTAPGLGLVLNRIHYEKYNVRYGEDGCHEALDFQKEEQQIQEFFRKHIAATIV 408
Query: 298 KTEITEKPMLAWLELLADHSFETR 321
+TE+ M WLE L HS+E R
Sbjct: 409 ETELKTFSMFEWLETLPLHSYEPR 432
>gi|332029057|gb|EGI69071.1| tRNA pseudouridine synthase A [Acromyrmex echinatior]
Length = 398
Score = 350 bits (898), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 173/345 (50%), Positives = 230/345 (66%), Gaps = 35/345 (10%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
AM+ Y G Y+G+Q RN GMKTIE D++ AL KA +T++ F + I F
Sbjct: 46 AMLLGYVGKDYYGMQ----------RNPGMKTIEEDLIIALLKADLITKEQFENTRAINF 95
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
QRAARTDKGVSA++QIVSLKLPE +NK IN+ LP+ IR+ IKRVTKGFNSKN C+ART
Sbjct: 96 QRAARTDKGVSAIRQIVSLKLPENSNKTVINQFLPDAIRVFGIKRVTKGFNSKNQCDART 155
Query: 122 YSYTCPTYAFA------------TPQDTK------------DDFRLTPDQFNFLQALLKQ 157
Y Y P+YAFA +D + D+RL+P+ + L ++LK
Sbjct: 156 YRYVIPSYAFALEDQSLLKLGEEVDEDERIKQLSIIDGKPYTDYRLSPESLDRLNSILKL 215
Query: 158 YEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMV 217
+EG+HNFHNFTSK KPLDP RYI+SF C + FV + +EL L+IKGQSFMLHQIRKMV
Sbjct: 216 FEGSHNFHNFTSKVKPLDPRARRYIISFCCTETFVLNDIELAVLEIKGQSFMLHQIRKMV 275
Query: 218 GVAMAIARGFTSKDLIEKTF-GLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLH 276
+ +AIAR SK+ I++ F +D+ DLP+AP LGL L VHYD Y+++YG DG+HE+L
Sbjct: 276 AIVIAIARNMISKETIDEAFKTMDKMDLPLAPSLGLCLCHVHYDNYSKRYGTDGLHETLD 335
Query: 277 FHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSFETR 321
+ E ++EV +F+ +IL +++ TEI+E+ L WL L +SF R
Sbjct: 336 WKECEEEVEKFQKTYILQHMIDTEISEQTTLKWLTSLPFYSFSNR 380
>gi|118782859|ref|XP_312543.3| AGAP002409-PA [Anopheles gambiae str. PEST]
gi|116129767|gb|EAA08062.3| AGAP002409-PA [Anopheles gambiae str. PEST]
Length = 451
Score = 347 bits (891), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 167/324 (51%), Positives = 225/324 (69%), Gaps = 16/324 (4%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
++ YSGV YFG+Q RN G KTIE D++ A+ K ++ ++ F PQ IQFQ
Sbjct: 115 ILLGYSGVNYFGMQ----------RNPGTKTIEEDLLRAMQKREWINDEGFRQPQQIQFQ 164
Query: 63 RAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTY 122
RAARTDKGVSA Q+VS+KLP+ + EA+N LPE IR+ ++KRVTKGFNSK NC+ARTY
Sbjct: 165 RAARTDKGVSAAMQVVSIKLPDNLDIEALNSELPEDIRVYAVKRVTKGFNSKTNCDARTY 224
Query: 123 SYTCPTYAFATPQDTKDD---FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCS 179
+YT PT AFA P + K D +RL ++ + +L Y GT NFHNFTS+++ LDPS
Sbjct: 225 TYTLPTIAFA-PNEEKVDIQTYRLPAERLARVNEVLALYVGTKNFHNFTSRKEFLDPSVK 283
Query: 180 RYIMSFDCEQPFVKDG--LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTF 237
R+IMSF+C+ PF+ +G E T+KIKGQSFMLHQIRKMVG+ +A+ RG D+IEK F
Sbjct: 284 RFIMSFECDPPFLPEGSTAEFATIKIKGQSFMLHQIRKMVGLTIAVVRGLAESDIIEKAF 343
Query: 238 GLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLV 297
G D++ +P APGLGL+L ++HYD YN++YG+DG HE+L F + + + EF + I +V
Sbjct: 344 GQDRYGIPTAPGLGLVLSRIHYDKYNKRYGEDGCHETLEFEKEEPMIQEFFKRHIASTIV 403
Query: 298 KTEITEKPMLAWLELLADHSFETR 321
+TE+ M+ WLE L HS+E R
Sbjct: 404 ETELKTNSMVEWLEKLPLHSYEPR 427
>gi|195113035|ref|XP_002001075.1| GI22173 [Drosophila mojavensis]
gi|193917669|gb|EDW16536.1| GI22173 [Drosophila mojavensis]
Length = 401
Score = 343 bits (880), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 168/328 (51%), Positives = 226/328 (68%), Gaps = 13/328 (3%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ +Y G Y+G+Q RN GM+TIE ++ +A+ K ++TEDSF Q F
Sbjct: 73 AILLSYCGANYYGMQ----------RNPGMQTIEEELFKAMLKHKWITEDSFEQVQIACF 122
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
QRAARTDKGVSA +Q+ S+KLPEE + EA N+ LPEQIRI ++RVTKGFN+K+ CNART
Sbjct: 123 QRAARTDKGVSAARQVCSVKLPEELDLEAFNKDLPEQIRIFGVERVTKGFNAKDQCNART 182
Query: 122 YSYTCPTYAFATPQDTKDD--FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCS 179
Y+YT PT AFA D D +R+ ++ + A LK YEGT NFHNFTSK+ LDPS
Sbjct: 183 YTYTLPTIAFAAFDDQHDQETYRIPIERLEKVSATLKLYEGTKNFHNFTSKKNFLDPSAK 242
Query: 180 RYIMSFDCEQPFVK-DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFG 238
R+IMSF C PF+ +E +TLK+KGQSFMLHQIRKMVG+A+AI RG T+ +E+
Sbjct: 243 RFIMSFTCSTPFLSPQSVEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTTATLERALT 302
Query: 239 LDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVK 298
++ DLPMAPGLGL+L+ VHY+ YN +YG DG+H+ L + E +++V +F K+I + K
Sbjct: 303 EERLDLPMAPGLGLVLDTVHYERYNDRYGNDGIHKPLTWAEQEEQVTQFVEKYIYSNIYK 362
Query: 299 TEITEKPMLAWLELLADHSFETRAAKAA 326
TE ++ ML WL L HS++TR + A
Sbjct: 363 TEAEQRNMLDWLSTLHFHSYDTRREEPA 390
>gi|170072176|ref|XP_001870114.1| tRNA pseudouridine synthase A [Culex quinquefasciatus]
gi|167868280|gb|EDS31663.1| tRNA pseudouridine synthase A [Culex quinquefasciatus]
Length = 431
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 163/323 (50%), Positives = 225/323 (69%), Gaps = 14/323 (4%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
++ YSGV YFG+Q RN G KTIE +++ A+ K ++++++F PQ IQFQ
Sbjct: 98 ILMGYSGVNYFGMQ----------RNPGTKTIEEELLVAMLKNEWISDEAFKQPQQIQFQ 147
Query: 63 RAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTY 122
RAARTDKGVSA Q+VS+KLPE + +N+ LPEQIR+ ++KRVTKGFNSK+NC+ARTY
Sbjct: 148 RAARTDKGVSAATQVVSIKLPENLDIAGLNKDLPEQIRVFAVKRVTKGFNSKSNCDARTY 207
Query: 123 SYTCPTYAFATPQD--TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSR 180
+YT PT AFA + + + +R D+ +Q LK +EGT NFHNFTS+++ +DPS R
Sbjct: 208 TYTLPTVAFAAHDEEVSVETYRAPEDRIQKVQETLKLFEGTKNFHNFTSRKEFIDPSVKR 267
Query: 181 YIMSFDCEQPFVKDG--LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFG 238
+IMSF+CE PFV +G +E T+KIKGQSFMLHQIRKMVG+ +A+ RG T + I K F
Sbjct: 268 FIMSFECEAPFVPEGTTVEFATIKIKGQSFMLHQIRKMVGLTLAVVRGLTPPETIMKAFE 327
Query: 239 LDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVK 298
++ +P APGLGL+L ++HY+ YN +YG DG HE+L F + ++ F + I +VK
Sbjct: 328 ETRYGVPTAPGLGLVLSRIHYEKYNVRYGADGCHETLDFEQEQDQIQSFFREHIASTIVK 387
Query: 299 TEITEKPMLAWLELLADHSFETR 321
TE+ E+ M+ WLE L HS+E R
Sbjct: 388 TELAERSMVEWLETLPLHSYEPR 410
>gi|194744150|ref|XP_001954558.1| GF18329 [Drosophila ananassae]
gi|190627595|gb|EDV43119.1| GF18329 [Drosophila ananassae]
Length = 410
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 167/329 (50%), Positives = 228/329 (69%), Gaps = 15/329 (4%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ +Y G Y+G+Q RN GM+TIE ++ +A+ K ++TEDSF Q F
Sbjct: 73 AILLSYCGANYYGMQ----------RNPGMQTIEEELFKAMLKHKWITEDSFEQVQIACF 122
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
QRAARTDKGVSA +Q+ S+KLP+E + EA N LP+QIR+ ++RVTKGFN+K+ CNART
Sbjct: 123 QRAARTDKGVSAARQVCSVKLPDELDLEAFNADLPDQIRLFGVERVTKGFNAKDQCNART 182
Query: 122 YSYTCPTYAFATPQ----DTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPS 177
Y+YT PT AFA+ + D D +R+TP+ ++ LK YEGT NFHNFTSK+ LDPS
Sbjct: 183 YTYTLPTVAFASSEEKIEDLHDTYRITPELLEKVRETLKLYEGTKNFHNFTSKKNFLDPS 242
Query: 178 CSRYIMSFDCEQPFVK-DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKT 236
R+IMSF PF+ G+E +TLK+KGQSFMLHQIRKMVG+A+AI RG T+ + +E+
Sbjct: 243 AKRFIMSFVSSDPFLSPQGIEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTTESLERA 302
Query: 237 FGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYL 296
++ DLPMAPGLGL+L+ VHY+ YN +YG+DG+H L + + +K+VNEF + I +
Sbjct: 303 LTEERLDLPMAPGLGLVLDTVHYERYNDRYGKDGIHNPLTWEKQEKQVNEFIEREIFSQI 362
Query: 297 VKTEITEKPMLAWLELLADHSFETRAAKA 325
KTE ++ ML WL L HS++TR A
Sbjct: 363 YKTEAEQRNMLDWLGTLHYHSYDTRRDDA 391
>gi|312385729|gb|EFR30155.1| hypothetical protein AND_00413 [Anopheles darlingi]
Length = 443
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 165/326 (50%), Positives = 221/326 (67%), Gaps = 17/326 (5%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
++ YSGV YFG+Q RN G +TIE D++ A+ K ++ ++ F PQ IQF
Sbjct: 107 VILLGYSGVDYFGMQ----------RNPGTRTIEEDLLRAMLKQEWINDEGFRQPQQIQF 156
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
QRAARTDKGVSA Q+VS+KLP+ + A+N LP QIR+ ++KRVTKGFNSK NC+ART
Sbjct: 157 QRAARTDKGVSAAVQVVSIKLPDNLDVAALNGELPPQIRVYAVKRVTKGFNSKTNCDART 216
Query: 122 YSYTCPTYAFATPQDTKD----DFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPS 177
Y+YT PT AFA D KD +R D+ + +L Y GT NFHNFTS+++ +DPS
Sbjct: 217 YTYTLPTIAFAA-NDEKDLDILTYRAPADRLQRVNEVLALYLGTKNFHNFTSRKEFIDPS 275
Query: 178 CSRYIMSFDCEQPFVKDGL--ELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
RYIM F+C PFV DG E T++IKGQSFMLHQIRKMVG+ +A+ RG + D+IEK
Sbjct: 276 VKRYIMEFECGTPFVPDGTTAEFATIRIKGQSFMLHQIRKMVGLTLAVVRGLSQADIIEK 335
Query: 236 TFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPY 295
FG +++ +P APGLGL+L ++HYD YN++YG+DG HE L F + + ++ EF + I
Sbjct: 336 AFGQERYGIPTAPGLGLVLSRIHYDKYNKRYGEDGCHEMLDFEKEEAQIEEFFKQHIAST 395
Query: 296 LVKTEITEKPMLAWLELLADHSFETR 321
+V+TE+ ML WLE L HS+E R
Sbjct: 396 IVETELKTGSMLEWLEKLPLHSYEPR 421
>gi|156538138|ref|XP_001608257.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Nasonia vitripennis]
Length = 437
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 176/375 (46%), Positives = 237/375 (63%), Gaps = 48/375 (12%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
AMM Y G Y+G+Q RN G TIE ++++A+ KA +T ++F T QNI F
Sbjct: 75 AMMLGYCGKNYYGMQ----------RNPGFNTIEEELIKAMLKADLITSEAFETIQNINF 124
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
QRAARTDKGVSA++Q+VSLKLPE+ +K++INE LPE IR+ +IKRVTKGFNSK+ C+ART
Sbjct: 125 QRAARTDKGVSAVRQVVSLKLPEDPSKDSINETLPEDIRVFAIKRVTKGFNSKSQCDART 184
Query: 122 YSYTCPTYAFATPQDTK--------------------------DDFRLTPDQFNFLQALL 155
YSYT PT+A A P++ + ++RL ++ L LL
Sbjct: 185 YSYTMPTFALA-PENLELFQEMSEYNDVEKRMEQLSTIDGKPFHEYRLPQERKEKLTELL 243
Query: 156 KQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRK 215
K EGTHNFHNFTSK PLDP RYIMSF E+PF+ + +E ITLK+KGQSFMLHQIRK
Sbjct: 244 KVLEGTHNFHNFTSKVLPLDPRAKRYIMSFIAEEPFLVNNMEFITLKVKGQSFMLHQIRK 303
Query: 216 MVGVAMAIARGFTSKDLIEKT-FGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHES 274
MV + + + R ++ EKT F ++D+ +AP LGL+L VHYD YN++YG DGMH++
Sbjct: 304 MVAMVIGVIRNIVPREEFEKTVFEQAKYDITIAPSLGLMLNIVHYDYYNKRYGSDGMHDT 363
Query: 275 LHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEE 334
L + E D+E+ EF FIL ++ TE+ EKPML WL L ++ R E
Sbjct: 364 LDWAECDQEIAEFEKNFILKHVFDTELKEKPMLEWLANLQVGAYGVR----------DES 413
Query: 335 LQEVTDGEEEEDEED 349
+ D +E++D +D
Sbjct: 414 RDQKDDAKEDKDAKD 428
>gi|195353947|ref|XP_002043463.1| GM23177 [Drosophila sechellia]
gi|194127604|gb|EDW49647.1| GM23177 [Drosophila sechellia]
Length = 411
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 170/351 (48%), Positives = 236/351 (67%), Gaps = 17/351 (4%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ +Y G Y+G+Q RN GM+TIE ++ +A+ K ++TEDSF Q F
Sbjct: 73 AILLSYCGANYYGMQ----------RNPGMQTIEEELFKAMLKHKWITEDSFEQIQISCF 122
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
QRAARTDKGVSA +Q+ S+KLPEE + EA N LP+QIR+ ++RVTKGFN+K+ CNART
Sbjct: 123 QRAARTDKGVSAARQVCSVKLPEELDLEAFNADLPQQIRLFGVERVTKGFNAKDQCNART 182
Query: 122 YSYTCPTYAFAT----PQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPS 177
Y+YT PT AFA+ +D D FR++P+ ++ LK YEGT NFHNFTSK+ LDPS
Sbjct: 183 YTYTLPTVAFASFEEQVEDVHDTFRISPELLQKVKETLKLYEGTKNFHNFTSKKSFLDPS 242
Query: 178 CSRYIMSFDCEQPFVK-DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKT 236
R+IMSF +PF +E +TLK+KGQSFMLHQIRKMVG+A+AI RG T+ +E+
Sbjct: 243 SKRFIMSFTSSEPFRSPQDIEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTAATLERA 302
Query: 237 FGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYL 296
++ DLPMAPGLGL+L+ VHY+ YN +YG+DG+H SL + + +V EF + I +
Sbjct: 303 LTEERLDLPMAPGLGLVLDTVHYERYNDRYGKDGIHNSLTWQAQEAQVQEFIEREIFSQI 362
Query: 297 VKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEEDE 347
KTE ++ ML W+ L HS++TR A ++ E ++V G+++ DE
Sbjct: 363 YKTEAEQRNMLDWIGTLHYHSYDTRTEDAPPPPSS--EGKKVKGGDDDNDE 411
>gi|194899730|ref|XP_001979411.1| GG15313 [Drosophila erecta]
gi|190651114|gb|EDV48369.1| GG15313 [Drosophila erecta]
Length = 410
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 168/351 (47%), Positives = 237/351 (67%), Gaps = 18/351 (5%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ +Y G Y+G+Q RN GM+TIE ++ +A+ K ++TEDSF Q F
Sbjct: 73 AILLSYCGANYYGMQ----------RNPGMQTIEEELFKAMLKHKWITEDSFEQIQISCF 122
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
QRAARTDKGVSA +Q+ S+KLPE+ + EA N LP+QIR+ ++RVTKGFN+K+ CNART
Sbjct: 123 QRAARTDKGVSAARQVCSVKLPEDLDLEAFNADLPQQIRLFGVERVTKGFNAKDQCNART 182
Query: 122 YSYTCPTYAFA----TPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPS 177
Y+YT PT AFA +D D F+++P+ ++ LK YEGT NFHNFTSK+ LDPS
Sbjct: 183 YTYTLPTMAFAPFEEKVEDLHDTFQISPELLQKVKETLKLYEGTKNFHNFTSKKSFLDPS 242
Query: 178 CSRYIMSFDCEQPFVK-DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKT 236
R+IMSF PF G+E +TLK+KGQSFMLHQIRKMVG+A+AI RG T+ +E+
Sbjct: 243 SKRFIMSFTSSDPFRSPQGIEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTAATLERA 302
Query: 237 FGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYL 296
++ DLPMAPGLGL+L+ VHY+ YN +YG+DG+H L + + +V +F + I +
Sbjct: 303 LTEERLDLPMAPGLGLVLDTVHYERYNDRYGKDGIHNPLTWQAQEAQVQDFIEREIFSQI 362
Query: 297 VKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEEDE 347
KTE ++ ML W+ L HS++TRA A A+++G +++ G+++ DE
Sbjct: 363 YKTEAEQRNMLDWIGTLHYHSYDTRAEDAPPASSDG---KKIKGGDDDNDE 410
>gi|91076290|ref|XP_968649.1| PREDICTED: similar to AGAP002409-PA [Tribolium castaneum]
Length = 588
Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 158/321 (49%), Positives = 224/321 (69%), Gaps = 15/321 (4%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ YSG Y+G+Q RN TIE + +AL+K +++E++F Q +QF
Sbjct: 258 AVLLGYSGTNYYGMQ----------RNPNTPTIEEEFFKALYKNNYISEENFTQVQTMQF 307
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
QRAARTDKGVSA +Q+VSLKL E+ + INE LPE IR+ I+RVTKGFNSK C++R+
Sbjct: 308 QRAARTDKGVSAARQVVSLKLREDIDISKINEQLPEVIRVFGIRRVTKGFNSKVQCDSRS 367
Query: 122 YSYTCPTYAFATPQD---TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSC 178
Y+Y PT +F TP D + FRL N + LL++Y GT NFHNFTSK++ DPS
Sbjct: 368 YTYLLPTVSF-TPHDQLMVQKGFRLDDSTLNRINDLLQKYLGTKNFHNFTSKKQATDPSA 426
Query: 179 SRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFG 238
RY+ + CE+PFVKD +E +KI+GQSFMLHQIRKMVG+ +A+ +G+TS+D ++ FG
Sbjct: 427 KRYMKTLICEKPFVKDDVEFALIKIRGQSFMLHQIRKMVGLLIAVVKGYTSEDTLDLAFG 486
Query: 239 LDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVK 298
+D+ ++P APGLGLLL+ VHY+ Y+ +YG DG+HE L + +V+KEV EFR K+I P ++
Sbjct: 487 MDKVNIPKAPGLGLLLDYVHYERYDNRYGADGVHEKLVWDDVEKEVEEFREKYIFPTIIN 546
Query: 299 TEITEKPMLAW-LELLADHSF 318
TE+ ++ M+AW + L+ H +
Sbjct: 547 TEVKDEAMVAWIIRRLSTHKY 567
>gi|270002527|gb|EEZ98974.1| hypothetical protein TcasGA2_TC004829 [Tribolium castaneum]
Length = 390
Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 158/321 (49%), Positives = 224/321 (69%), Gaps = 15/321 (4%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ YSG Y+G+Q RN TIE + +AL+K +++E++F Q +QF
Sbjct: 60 AVLLGYSGTNYYGMQ----------RNPNTPTIEEEFFKALYKNNYISEENFTQVQTMQF 109
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
QRAARTDKGVSA +Q+VSLKL E+ + INE LPE IR+ I+RVTKGFNSK C++R+
Sbjct: 110 QRAARTDKGVSAARQVVSLKLREDIDISKINEQLPEVIRVFGIRRVTKGFNSKVQCDSRS 169
Query: 122 YSYTCPTYAFATPQD---TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSC 178
Y+Y PT +F TP D + FRL N + LL++Y GT NFHNFTSK++ DPS
Sbjct: 170 YTYLLPTVSF-TPHDQLMVQKGFRLDDSTLNRINDLLQKYLGTKNFHNFTSKKQATDPSA 228
Query: 179 SRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFG 238
RY+ + CE+PFVKD +E +KI+GQSFMLHQIRKMVG+ +A+ +G+TS+D ++ FG
Sbjct: 229 KRYMKTLICEKPFVKDDVEFALIKIRGQSFMLHQIRKMVGLLIAVVKGYTSEDTLDLAFG 288
Query: 239 LDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVK 298
+D+ ++P APGLGLLL+ VHY+ Y+ +YG DG+HE L + +V+KEV EFR K+I P ++
Sbjct: 289 MDKVNIPKAPGLGLLLDYVHYERYDNRYGADGVHEKLVWDDVEKEVEEFREKYIFPTIIN 348
Query: 299 TEITEKPMLAW-LELLADHSF 318
TE+ ++ M+AW + L+ H +
Sbjct: 349 TEVKDEAMVAWIIRRLSTHKY 369
>gi|195158909|ref|XP_002020326.1| GL13924 [Drosophila persimilis]
gi|194117095|gb|EDW39138.1| GL13924 [Drosophila persimilis]
Length = 409
Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 164/323 (50%), Positives = 224/323 (69%), Gaps = 13/323 (4%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ +Y G Y+G+Q RN GM+TIE ++ +A+ K ++TEDSF+ Q F
Sbjct: 73 AILLSYCGANYYGMQ----------RNPGMQTIEEELFKAMLKHKWITEDSFDQVQIACF 122
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
QRAARTDKGVSA +QI S+KLPEE + EA N LPEQIR+ ++RVTKGFN+K+ CNART
Sbjct: 123 QRAARTDKGVSAARQICSVKLPEELDLEAFNADLPEQIRLFGVERVTKGFNAKDQCNART 182
Query: 122 YSYTCPTYAFAT--PQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCS 179
Y+YT PT AFA+ + +D FR+TP+ + ++ LK YEGT NFHNFTSK+ LDPS
Sbjct: 183 YTYTLPTVAFASCEAESEQDTFRITPELLDRVKETLKLYEGTKNFHNFTSKKNFLDPSAK 242
Query: 180 RYIMSFDCEQPFVK-DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFG 238
R+IM+F +PF G+E +TLK+KGQSFMLHQIRKMVG+A+AI RG T+ +E+
Sbjct: 243 RFIMAFTSSEPFQSPQGVEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTAITLERALT 302
Query: 239 LDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVK 298
++ DLPMAPGLGL+L+ VHY+ YN++YG+DG+H L + + +V F I + K
Sbjct: 303 EERLDLPMAPGLGLVLDTVHYERYNERYGKDGIHNPLTWEAQETQVQAFVESQIFSQIYK 362
Query: 299 TEITEKPMLAWLELLADHSFETR 321
TE ++ ML W+ L HS++TR
Sbjct: 363 TEAEQRNMLDWIGTLHYHSYDTR 385
>gi|195569417|ref|XP_002102706.1| GD20050 [Drosophila simulans]
gi|194198633|gb|EDX12209.1| GD20050 [Drosophila simulans]
Length = 411
Score = 337 bits (863), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 169/351 (48%), Positives = 236/351 (67%), Gaps = 17/351 (4%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ +Y G Y+G+Q RN GM+TIE ++ +A+ K ++TEDSF Q F
Sbjct: 73 AILLSYCGANYYGMQ----------RNPGMQTIEEELFKAMLKHKWITEDSFEQIQISCF 122
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
QRAARTDKGVSA +Q+ S+KLPEE + EA N LP+QIR+ ++RVTKGFN+K+ CNART
Sbjct: 123 QRAARTDKGVSAARQVCSVKLPEELDLEAFNADLPQQIRLFGVERVTKGFNAKDQCNART 182
Query: 122 YSYTCPTYAFATPQDTKDD----FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPS 177
Y+YT PT AFA+ ++ DD FR++P+ ++ LK YEGT NFHNFTSK+ LDPS
Sbjct: 183 YTYTLPTVAFASFEEKVDDVHDTFRISPELLQKVKETLKLYEGTKNFHNFTSKKSFLDPS 242
Query: 178 CSRYIMSFDCEQPFVK-DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKT 236
R+IMSF +PF +E +TLK+KGQSFMLHQIRKMVG+A+AI RG T+ +E+
Sbjct: 243 SKRFIMSFTSSEPFRSPQDIEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTAATLERA 302
Query: 237 FGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYL 296
++ DLPMAPGLGL+L+ VHY+ YN +YG+DG+H L + + +V EF + I +
Sbjct: 303 LTEERLDLPMAPGLGLVLDTVHYERYNDRYGKDGIHNPLTWQAQEAQVQEFIEREIFSQI 362
Query: 297 VKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEEDE 347
KTE ++ ML W+ L HS++TR A ++ E ++V G+++ DE
Sbjct: 363 YKTEAEQRNMLDWIGTLHYHSYDTRTEDAPPPPSS--EGKKVKGGDDDNDE 411
>gi|125773069|ref|XP_001357793.1| GA17995 [Drosophila pseudoobscura pseudoobscura]
gi|54637526|gb|EAL26928.1| GA17995 [Drosophila pseudoobscura pseudoobscura]
Length = 409
Score = 336 bits (862), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 163/323 (50%), Positives = 224/323 (69%), Gaps = 13/323 (4%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ +Y G Y+G+Q RN GM+TIE ++ +A+ K ++TEDSF+ Q F
Sbjct: 73 AILLSYCGANYYGMQ----------RNPGMQTIEEELFKAMLKHKWITEDSFDQVQIACF 122
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
QRAARTDKGVSA +QI S+KLPEE + EA N LPEQIR+ ++RVTKGFN+K+ CNART
Sbjct: 123 QRAARTDKGVSAARQICSVKLPEELDLEAFNADLPEQIRLFGVERVTKGFNAKDQCNART 182
Query: 122 YSYTCPTYAFAT--PQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCS 179
Y+YT PT AFA+ + +D FR+TP+ + ++ LK YEGT NFHNFTSK+ LDPS
Sbjct: 183 YTYTLPTVAFASCEAESEQDTFRITPELLDRVKETLKLYEGTKNFHNFTSKKNFLDPSAK 242
Query: 180 RYIMSFDCEQPFVK-DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFG 238
R+IM+F +PF G+E +TLK+KGQSFMLHQIRKMVG+A+AI RG T+ +++
Sbjct: 243 RFIMAFTSSEPFQSPQGVEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTAITLDRALT 302
Query: 239 LDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVK 298
++ DLPMAPGLGL+L+ VHY+ YN++YG+DG+H L + + +V F I + K
Sbjct: 303 EERLDLPMAPGLGLVLDTVHYERYNERYGKDGIHNPLTWEAQETQVQAFVESQIFSQIYK 362
Query: 299 TEITEKPMLAWLELLADHSFETR 321
TE ++ ML W+ L HS++TR
Sbjct: 363 TEAEQRNMLDWIGTLHYHSYDTR 385
>gi|281362146|ref|NP_001163664.1| CG4159, isoform B [Drosophila melanogaster]
gi|272477072|gb|ACZ94960.1| CG4159, isoform B [Drosophila melanogaster]
Length = 442
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 169/351 (48%), Positives = 233/351 (66%), Gaps = 18/351 (5%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ +Y G Y+G+Q RN GM+TIE ++ +A+ K ++TEDSF Q F
Sbjct: 105 AILLSYCGANYYGMQ----------RNPGMQTIEEELFKAMLKHKWITEDSFEQIQISCF 154
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
QRAARTDKGVSA +Q+ S+KLPEE + EA N LP+QIR+ ++RVTKGFN+K+ CNART
Sbjct: 155 QRAARTDKGVSAARQVCSVKLPEELDLEAFNADLPQQIRLFGVERVTKGFNAKDQCNART 214
Query: 122 YSYTCPTYAFA----TPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPS 177
Y+YT PT AFA D D FR++P+ ++ LK YEGT NFHNFTSK+ LDPS
Sbjct: 215 YTYTLPTVAFAPFEEKVDDVHDTFRISPELLQKVKETLKLYEGTKNFHNFTSKKSFLDPS 274
Query: 178 CSRYIMSFDCEQPFVK-DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKT 236
R+IMSF +PF +E +TLK+KGQSFMLHQIRKMVG+A+AI RG T+ +E+
Sbjct: 275 SKRFIMSFTSSEPFRSPQDIEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTAATLERA 334
Query: 237 FGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYL 296
++ DLPMAPGLGL+L+ VHY+ YN +YG+DG+H L + + +V EF + I +
Sbjct: 335 LTEERLDLPMAPGLGLVLDTVHYERYNDRYGKDGIHNPLTWQAQEAQVQEFIEREIFSQI 394
Query: 297 VKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEEDE 347
KTE ++ ML W+ L HS++TR A ++ E ++V G+++ DE
Sbjct: 395 YKTEAEQRNMLDWIGTLHYHSYDTRTEDAPPPSS---EDKKVKGGDDDNDE 442
>gi|24648455|ref|NP_650899.1| CG4159, isoform A [Drosophila melanogaster]
gi|7300636|gb|AAF55785.1| CG4159, isoform A [Drosophila melanogaster]
Length = 410
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 169/351 (48%), Positives = 233/351 (66%), Gaps = 18/351 (5%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ +Y G Y+G+Q RN GM+TIE ++ +A+ K ++TEDSF Q F
Sbjct: 73 AILLSYCGANYYGMQ----------RNPGMQTIEEELFKAMLKHKWITEDSFEQIQISCF 122
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
QRAARTDKGVSA +Q+ S+KLPEE + EA N LP+QIR+ ++RVTKGFN+K+ CNART
Sbjct: 123 QRAARTDKGVSAARQVCSVKLPEELDLEAFNADLPQQIRLFGVERVTKGFNAKDQCNART 182
Query: 122 YSYTCPTYAFA----TPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPS 177
Y+YT PT AFA D D FR++P+ ++ LK YEGT NFHNFTSK+ LDPS
Sbjct: 183 YTYTLPTVAFAPFEEKVDDVHDTFRISPELLQKVKETLKLYEGTKNFHNFTSKKSFLDPS 242
Query: 178 CSRYIMSFDCEQPFVK-DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKT 236
R+IMSF +PF +E +TLK+KGQSFMLHQIRKMVG+A+AI RG T+ +E+
Sbjct: 243 SKRFIMSFTSSEPFRSPQDIEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTAATLERA 302
Query: 237 FGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYL 296
++ DLPMAPGLGL+L+ VHY+ YN +YG+DG+H L + + +V EF + I +
Sbjct: 303 LTEERLDLPMAPGLGLVLDTVHYERYNDRYGKDGIHNPLTWQAQEAQVQEFIEREIFSQI 362
Query: 297 VKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEEDE 347
KTE ++ ML W+ L HS++TR A ++ E ++V G+++ DE
Sbjct: 363 YKTEAEQRNMLDWIGTLHYHSYDTRTEDAPPPSS---EDKKVKGGDDDNDE 410
>gi|372099929|gb|AEX66197.1| FI18513p1 [Drosophila melanogaster]
Length = 467
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 169/351 (48%), Positives = 233/351 (66%), Gaps = 18/351 (5%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ +Y G Y+G+Q RN GM+TIE ++ +A+ K ++TEDSF Q F
Sbjct: 130 AILLSYCGANYYGMQ----------RNPGMQTIEEELFKAMLKHKWITEDSFEQIQISCF 179
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
QRAARTDKGVSA +Q+ S+KLPEE + EA N LP+QIR+ ++RVTKGFN+K+ CNART
Sbjct: 180 QRAARTDKGVSAARQVCSVKLPEELDLEAFNADLPQQIRLFGVERVTKGFNAKDQCNART 239
Query: 122 YSYTCPTYAFA----TPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPS 177
Y+YT PT AFA D D FR++P+ ++ LK YEGT NFHNFTSK+ LDPS
Sbjct: 240 YTYTLPTVAFAPFEEKVDDVHDTFRISPELLQKVKETLKLYEGTKNFHNFTSKKSFLDPS 299
Query: 178 CSRYIMSFDCEQPFVK-DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKT 236
R+IMSF +PF +E +TLK+KGQSFMLHQIRKMVG+A+AI RG T+ +E+
Sbjct: 300 SKRFIMSFTSSEPFRSPQDIEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTAATLERA 359
Query: 237 FGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYL 296
++ DLPMAPGLGL+L+ VHY+ YN +YG+DG+H L + + +V EF + I +
Sbjct: 360 LTEERLDLPMAPGLGLVLDTVHYERYNDRYGKDGIHNPLTWQAQEAQVQEFIEREIFSQI 419
Query: 297 VKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEEDE 347
KTE ++ ML W+ L HS++TR A ++ E ++V G+++ DE
Sbjct: 420 YKTEAEQRNMLDWIGTLHYHSYDTRTEDAPPPSS---EDKKVKGGDDDNDE 467
>gi|242001376|ref|XP_002435331.1| pseudouridylate synthase, putative [Ixodes scapularis]
gi|215498661|gb|EEC08155.1| pseudouridylate synthase, putative [Ixodes scapularis]
Length = 442
Score = 334 bits (857), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 156/326 (47%), Positives = 223/326 (68%), Gaps = 15/326 (4%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
MA+ +Y+G Y G+Q RN G KTIE D+++A++K + ++ + PQ ++
Sbjct: 73 MALCMSYNGKDYLGMQ----------RNPGTKTIEDDLLQAMYKGDLILKEHVDVPQAMK 122
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNN 116
FQRAARTDKGVSA++QIVSLKLP E IN HL +QIR++ IKR T+GFN KN+
Sbjct: 123 FQRAARTDKGVSAVRQIVSLKLPTNLTVEEMVDKINSHLVDQIRVIDIKRTTRGFNCKNS 182
Query: 117 CNARTYSYTCPTYAFATPQD-TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
C++RTY+Y PT+AFA P+ ++ +R+T ++ + +L Y+G HN+HNFTS +K D
Sbjct: 183 CDSRTYTYVLPTFAFAPPESPAEESYRITEERIGEVNNVLALYKGCHNYHNFTSGKKSED 242
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
PS RYI+S +C QPFV+ E + ++IKGQSFMLHQIRKMVG+ +AI RG T + I +
Sbjct: 243 PSAMRYIISAECAQPFVQGDQEFVQVQIKGQSFMLHQIRKMVGLVIAIMRGCTKETTIRR 302
Query: 236 TFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPY 295
+G ++ DLP+AP LGL+LE+VHYD YN++YG DG+HE L + E + F+ K I P
Sbjct: 303 AWGPEKLDLPIAPALGLMLEEVHYDRYNKRYGGDGLHEPLTWEEKQDIIQSFKEKHIYPT 362
Query: 296 LVKTEITEKPMLAWLELLADHSFETR 321
+++TE EK ML W+E L H+++ R
Sbjct: 363 ILETEKNEKSMLTWMENLPLHTYDVR 388
>gi|195498243|ref|XP_002096440.1| GE25055 [Drosophila yakuba]
gi|194182541|gb|EDW96152.1| GE25055 [Drosophila yakuba]
Length = 410
Score = 333 bits (855), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 165/351 (47%), Positives = 236/351 (67%), Gaps = 18/351 (5%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ +Y G ++G+Q RN GM+TIE ++ + + K ++TE+SF Q F
Sbjct: 73 AILLSYCGANFYGMQ----------RNPGMQTIEEELFKVMLKHKWITEESFEQIQISCF 122
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
QRAARTDKGVSA +Q+ S+KLPEE + EA N LP+QIR+ ++RVTKGFN+K+ CNART
Sbjct: 123 QRAARTDKGVSAARQVCSVKLPEELDLEAFNADLPQQIRLFGVERVTKGFNAKDQCNART 182
Query: 122 YSYTCPTYAFAT----PQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPS 177
Y+YT PT AFA+ +D D F+++P+ ++ LK YEGT NFHNFTSK+ LDPS
Sbjct: 183 YTYTLPTVAFASFEEKVEDLHDTFQISPELLQKVKETLKLYEGTKNFHNFTSKKSFLDPS 242
Query: 178 CSRYIMSFDCEQPFVK-DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKT 236
R+IMSF +PF G+E +TL +KGQSFMLHQIRKMVG+A+AI RG T+ +E+
Sbjct: 243 SKRFIMSFTSSEPFRSPQGIEFVTLNVKGQSFMLHQIRKMVGLAIAIVRGNTTAATLERA 302
Query: 237 FGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYL 296
++ DLPMAPGLGL+L+ VHY+ YN +YG+DG+H L + + +V +F + I +
Sbjct: 303 LTEERLDLPMAPGLGLVLDTVHYERYNDRYGKDGIHNPLTWQAQEAQVQKFIEREIFSQI 362
Query: 297 VKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEEDE 347
KTE ++ ML WL L HS++TRA A A+++ +++ G+++ DE
Sbjct: 363 YKTEAEQRNMLDWLGTLHYHSYDTRAEDAPPASSDS---KKIKGGDDDNDE 410
>gi|340372817|ref|XP_003384940.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Amphimedon queenslandica]
Length = 422
Score = 333 bits (854), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 157/321 (48%), Positives = 216/321 (67%), Gaps = 14/321 (4%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ AY G GY G+Q N G+ TIEG++M AL+KAG ++E ++ + F
Sbjct: 38 ALVIAYCGKGYMGMQ----------MNPGVPTIEGELMTALWKAGAISEAHKDSQNKLGF 87
Query: 62 QRAARTDKGVSALKQIVSLKL----PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNC 117
QR RTDKGVSA +Q+VSLK+ P ++ AINEHLPEQIRI+ +KRV+K FNSKN C
Sbjct: 88 QRCGRTDKGVSAARQVVSLKIIYMVPHQSMVSAINEHLPEQIRIIGLKRVSKSFNSKNAC 147
Query: 118 NARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPS 177
+R Y Y PTY FA + T D+R+T + N +QALL Y+GTH FHNFTS +KP DPS
Sbjct: 148 TSRLYEYLLPTYVFAPFKATNMDYRITATEINRIQALLNMYKGTHKFHNFTSGKKPTDPS 207
Query: 178 CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTF 237
C RYIMSF PFVK+ LE ++L ++GQSFM+HQIRKM+G+ +A+ RG+ + D I + F
Sbjct: 208 CHRYIMSFVIGSPFVKNDLEFVSLNVEGQSFMIHQIRKMIGLVIAVVRGYMNDDAITQAF 267
Query: 238 GLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLV 297
Q D+P AP LGL L+QV+Y YN+++G DG+HE L + E + V+ F+ ++I +++
Sbjct: 268 EPPQTDIPRAPALGLFLDQVYYKSYNRRFGDDGVHEKLEWTEYEDTVSRFKDEYIYRHII 327
Query: 298 KTEITEKPMLAWLELLADHSF 318
+TE+ E L WL L H F
Sbjct: 328 ETELREHVFLHWLHTLQLHDF 348
>gi|307214388|gb|EFN89459.1| tRNA pseudouridine synthase A [Harpegnathos saltator]
Length = 364
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 168/371 (45%), Positives = 228/371 (61%), Gaps = 35/371 (9%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
M Y G Y+G+Q RN GMKTIE D++ AL KA +T + F + I FQR
Sbjct: 1 MLGYLGKNYYGMQ----------RNPGMKTIEEDLVNALLKANLITTEQFENLRTINFQR 50
Query: 64 AARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYS 123
AARTDKGVSA++QIVSLKLPE +K IN+ LP+ IR+ IKRVTKGFNSKN C+ARTY
Sbjct: 51 AARTDKGVSAVRQIVSLKLPENPDKTIINQFLPDVIRVFGIKRVTKGFNSKNQCDARTYR 110
Query: 124 YTCPTYAFATPQ-------------------DTKD-----DFRLTPDQFNFLQALLKQYE 159
Y P++ FA T D D+RL+ + N L ++LK +E
Sbjct: 111 YIIPSFTFAMEDQSLLKMGEEVDINERIKQISTIDGEPYIDYRLSIESLNRLNSILKLFE 170
Query: 160 GTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGV 219
GTHNFHNFTSK KPLDP RYI++F C FV G+E + L++KGQSFMLHQIRKMV
Sbjct: 171 GTHNFHNFTSKTKPLDPRARRYIINFHCVDTFVSKGIEFVVLEVKGQSFMLHQIRKMVAT 230
Query: 220 AMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHE 279
+A+AR ++ I + F + ++P+AP LGL L VHYD Y ++YG DGMHE+L + E
Sbjct: 231 VIAVARNIIPEETINEAFKTVKMEIPIAPSLGLCLCHVHYDNYAKRYGTDGMHETLDWKE 290
Query: 280 VDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSFET-RAAKAALAAANGEELQEV 338
++EV +F+ ++IL Y++ TEI+E L W+ L ++SF + +EL ++
Sbjct: 291 CEEEVEKFQKEYILQYIIDTEISENTALNWIATLPEYSFSNIEELPVKIDETEDDELMKL 350
Query: 339 TDGEEEEDEED 349
+E+E+ D
Sbjct: 351 KTNDEKEEPVD 361
>gi|346472531|gb|AEO36110.1| hypothetical protein [Amblyomma maculatum]
Length = 449
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 157/326 (48%), Positives = 219/326 (67%), Gaps = 15/326 (4%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
MA+ YSG Y G+Q RN G KTIE D++ A++K + + + PQN++
Sbjct: 71 MALCMCYSGKDYLGMQ----------RNPGTKTIEEDLLTAMYKGELIQREHIDIPQNVK 120
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKEA----INEHLPEQIRILSIKRVTKGFNSKNN 116
FQRAARTDKGVSA++Q+VSLKLP + IN HL +QIR++ IKR T+GFN KN+
Sbjct: 121 FQRAARTDKGVSAVRQVVSLKLPTNIAIDEMVARINSHLVDQIRVIDIKRTTRGFNCKNS 180
Query: 117 CNARTYSYTCPTYAFATPQDT-KDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
C++RTYSY P+++FA P T ++ FR+T ++ + +L ++G HNFHNFTS +K D
Sbjct: 181 CDSRTYSYMLPSFSFAPPGVTPEESFRITSERIQDVNKVLALFKGCHNFHNFTSGKKSQD 240
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
PS RYI+S +C QPF+ LE + ++IKGQSFMLHQIRKMVG+ +AI RG T + +I +
Sbjct: 241 PSAMRYIISIECGQPFMAGNLEFLQIQIKGQSFMLHQIRKMVGLVIAIMRGHTDQSIIRR 300
Query: 236 TFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPY 295
+G ++ D+P+AP LGL+LE VHYD YN++YG DG+HE L + + F+ K I P
Sbjct: 301 AWGPERLDIPIAPALGLMLEHVHYDRYNRRYGGDGLHEPLCWEAKQDFIQTFKEKHIFPT 360
Query: 296 LVKTEITEKPMLAWLELLADHSFETR 321
+V TE EK ML W+E L HS++ R
Sbjct: 361 IVNTEQDEKSMLNWMENLQLHSYDVR 386
>gi|195449703|ref|XP_002072187.1| GK22713 [Drosophila willistoni]
gi|194168272|gb|EDW83173.1| GK22713 [Drosophila willistoni]
Length = 412
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 171/358 (47%), Positives = 228/358 (63%), Gaps = 28/358 (7%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ +Y G YFG+Q RN GM+TIE ++ + + K ++TEDSF Q F
Sbjct: 67 AILLSYCGANYFGMQ----------RNPGMQTIEEELFKVMLKHKWITEDSFEQVQIACF 116
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
QRAARTDKGVSA +Q+ S+KLP++ + +A NE LPEQIR+ ++RVTKGFN+K+ CNART
Sbjct: 117 QRAARTDKGVSAARQVCSVKLPDDLDLKAFNEDLPEQIRLFGVERVTKGFNAKDQCNART 176
Query: 122 YSYTCPTYAFATPQDTKDD----------FRLTPDQFNFLQALLKQYEGTHNFHNFTSKR 171
Y+YT PT AFA Q D + ++P+ ++ L+ YEGT NFHNFTSK+
Sbjct: 177 YTYTLPTVAFAPCQSESDKEAQPPEEQSTYCISPEHLQKVRETLQLYEGTKNFHNFTSKK 236
Query: 172 KPLDPSCSRYIMSFDCEQPFVK-DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSK 230
LDPS R+IM F C PF G+E +TLK+KGQSFMLHQIRKMVG+A+AI RG T+
Sbjct: 237 NFLDPSAKRFIMLFSCSDPFKSPQGIEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTT 296
Query: 231 DLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHK 290
+E+ ++ DLPMAPGLGL+L+ VHY+ YN +YG DG+H L + + EV+EF +
Sbjct: 297 STLERALTEERLDLPMAPGLGLVLDTVHYERYNDRYGTDGIHNPLTWAAQEAEVSEFVER 356
Query: 291 FILPYLVKTEITEKPMLAWLELLADHSFETRAAKAAL-----AAANGEELQEVTDGEE 343
I + KTE EK ML W+ L HS++TR A A G Q+ DGEE
Sbjct: 357 QIFSQIYKTEAEEKNMLDWISTLHYHSYDTRRDDAPPPPPPNAKRKGNTTQD--DGEE 412
>gi|427789583|gb|JAA60243.1| Putative trna pseudouridine synthase a mitochondrial [Rhipicephalus
pulchellus]
Length = 442
Score = 330 bits (845), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 154/326 (47%), Positives = 220/326 (67%), Gaps = 15/326 (4%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
MA+ YSG Y G+Q RN G KTIE D++ AL+K + + PQN++
Sbjct: 72 MALCMCYSGKDYLGMQ----------RNPGTKTIEEDLLTALYKGQLIQREHIEIPQNVK 121
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKEA----INEHLPEQIRILSIKRVTKGFNSKNN 116
FQRAARTDKGVSA++Q+VSLKLP + + IN HL +QIR++ IKR T+GFN KNN
Sbjct: 122 FQRAARTDKGVSAVRQVVSLKLPTNISIDEMVTRINSHLVDQIRVIDIKRTTRGFNCKNN 181
Query: 117 CNARTYSYTCPTYAFATPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
C++RTYSY P+++FA P T D+ +R+T ++ + +L Y+G HN+HNFTS +K D
Sbjct: 182 CDSRTYSYMLPSFSFAPPGVTPDESYRITSERIEEVNKVLALYKGCHNYHNFTSGKKSED 241
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
PS R+++S +C QPF++ +E + ++IKGQSFMLHQIRKMVG+ +AI RG T + I +
Sbjct: 242 PSAMRFMISAECGQPFIQGDIEFLQIRIKGQSFMLHQIRKMVGLVIAIMRGHTDQSTIRR 301
Query: 236 TFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPY 295
+G ++ D+P+AP LGL+LE +HYD YN++YG DG+HE L + + F+ K I P
Sbjct: 302 AWGPERLDIPIAPPLGLMLEHLHYDRYNKRYGGDGLHEPLCWEAKQDLIQAFKEKHIFPT 361
Query: 296 LVKTEITEKPMLAWLELLADHSFETR 321
+V+TE +K ML W+E L HS++ R
Sbjct: 362 IVETEKNDKSMLNWMENLPLHSYDVR 387
>gi|195391039|ref|XP_002054173.1| GJ24293 [Drosophila virilis]
gi|194152259|gb|EDW67693.1| GJ24293 [Drosophila virilis]
Length = 408
Score = 328 bits (840), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 165/353 (46%), Positives = 229/353 (64%), Gaps = 22/353 (6%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ +Y G Y+G+Q RN GM+TIE ++ + + K ++TEDSF Q F
Sbjct: 73 AILLSYCGANYYGMQ----------RNPGMQTIEEELFKVMLKHKWITEDSFEQVQIASF 122
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
QRAARTDKGVSA +Q+ S+KLPEE + +A N LP+QIR+ ++RVTKGFN+K+ CNART
Sbjct: 123 QRAARTDKGVSAARQVCSVKLPEELDLQAFNADLPDQIRLFGVERVTKGFNAKDQCNART 182
Query: 122 YSYTCPTYAFAT--PQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCS 179
Y+YT PT AFA Q ++ +R+ + LK YEGT NFHNFTSK+ LDPS
Sbjct: 183 YTYTLPTIAFAAFDEQHEQETYRIPLKLQEVVNTTLKLYEGTKNFHNFTSKKNFLDPSAK 242
Query: 180 RYIMSFDCEQPFVK-DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFG 238
RYIMSF C PF+ +E +TL++KGQSFMLHQIRKMVG+A+AI RG T+ +E+
Sbjct: 243 RYIMSFTCSAPFLSPQSIEFVTLQVKGQSFMLHQIRKMVGLAIAIVRGNTTTATLERALT 302
Query: 239 LDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVK 298
++ DLPMAPGLGL+L+ VHY+ YN +YG+DG+H L + +++V +F + I + K
Sbjct: 303 EERLDLPMAPGLGLVLDTVHYERYNDRYGKDGIHNPLTWEAQEEQVRQFIEQHIYANIYK 362
Query: 299 TEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEEDEEDRG 351
TE ++ ML WL L HS++TR E E T +++ +E+D G
Sbjct: 363 TEAEQRNMLDWLSTLHFHSYDTR---------RDEPPPEATGKQKKNNEDDDG 406
>gi|301604562|ref|XP_002931922.1| PREDICTED: tRNA pseudouridine synthase A [Xenopus (Silurana)
tropicalis]
Length = 399
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 162/351 (46%), Positives = 233/351 (66%), Gaps = 25/351 (7%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE ++++AL +G + ++ +
Sbjct: 57 VVLLMAYSGKGYHGMQ----------RNVGSSQFKTIEDELVQALVLSGCIPDNHAEDMK 106
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPEEANK-EAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ N E INE+LP IRIL +KRVT FNSKN+
Sbjct: 107 KMSFQRCARTDKGVSAAGQVVSLKIWLIDNVVEKINENLPSHIRILGLKRVTGRFNSKNS 166
Query: 117 CNARTYSYTCPTYAFATPQDTKDD--FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTYSYT PT+AF+ D FRL+ + N + LL Y+GT NFHNFTS++ P
Sbjct: 167 CDARTYSYTLPTFAFSHKDKEAQDENFRLSQETLNRVNELLALYKGTRNFHNFTSQKGPR 226
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
DPS RYIM CE PF + GLEL +K+KGQSFM+HQIRKM+G+ +A+ +GF +IE
Sbjct: 227 DPSAKRYIMEMHCEPPFQQGGLELAVIKVKGQSFMMHQIRKMIGLVIAVVKGFAPTSIIE 286
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G ++ D+P APGLGL+LE+VH++ YN+++G DG+HESL++ E ++++ F+ + I P
Sbjct: 287 RSWGEEKVDIPKAPGLGLVLERVHFEKYNRRFGNDGLHESLNWTEEEEKIESFKKEHIYP 346
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRA---------AKAALAAANGEELQ 336
+++TEI EK MLAWL L H ++ + A+ A+A + EE++
Sbjct: 347 TIIQTEIDEKSMLAWLATLPIHDYDATSVQQNQDNHKAEGAVAGISDEEIE 397
>gi|354479116|ref|XP_003501759.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial isoform 1
[Cricetulus griseus]
gi|344246326|gb|EGW02430.1| tRNA pseudouridine synthase A [Cricetulus griseus]
Length = 423
Score = 325 bits (832), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 162/355 (45%), Positives = 235/355 (66%), Gaps = 19/355 (5%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G +TIE D++ AL +AG + E+ +
Sbjct: 82 IVLLMAYSGKGYHGMQ----------RNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMR 131
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ + + IN HLP IRIL +KRVT GFNSKN
Sbjct: 132 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDILDKINSHLPSNIRILGLKRVTGGFNSKNK 191
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA +D +D+ +RL+P+ + LL Y+GTHNFHNFTS++ P
Sbjct: 192 CDARTYCYMLPTFAFAHKDRDVQDESYRLSPETLEQVNRLLACYKGTHNFHNFTSQKGPR 251
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+PS RYI+ CE+PFV++GLE +K+KGQSFM+HQIRKMVG+ +AI +G+ + ++E
Sbjct: 252 EPSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLE 311
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V F+ ++I P
Sbjct: 312 RSWGEEKVDVPKAPGLGLVLERVHFEKYNQRFGSDGLHEPLDWAQEEGKVAAFKEQYIYP 371
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEEDEED 349
+V TE E+ M WL L H+F +A A AA G ++ +G E + + D
Sbjct: 372 TIVSTERDERSMAQWLSTLPIHNF---SATALGAAGTGAKVPSSLEGSEGDGDTD 423
>gi|354479118|ref|XP_003501760.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial isoform 2
[Cricetulus griseus]
Length = 393
Score = 325 bits (832), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 162/355 (45%), Positives = 235/355 (66%), Gaps = 19/355 (5%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G +TIE D++ AL +AG + E+ +
Sbjct: 52 IVLLMAYSGKGYHGMQ----------RNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMR 101
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ + + IN HLP IRIL +KRVT GFNSKN
Sbjct: 102 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDILDKINSHLPSNIRILGLKRVTGGFNSKNK 161
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA +D +D+ +RL+P+ + LL Y+GTHNFHNFTS++ P
Sbjct: 162 CDARTYCYMLPTFAFAHKDRDVQDESYRLSPETLEQVNRLLACYKGTHNFHNFTSQKGPR 221
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+PS RYI+ CE+PFV++GLE +K+KGQSFM+HQIRKMVG+ +AI +G+ + ++E
Sbjct: 222 EPSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLE 281
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V F+ ++I P
Sbjct: 282 RSWGEEKVDVPKAPGLGLVLERVHFEKYNQRFGSDGLHEPLDWAQEEGKVAAFKEQYIYP 341
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEEDEED 349
+V TE E+ M WL L H+F +A A AA G ++ +G E + + D
Sbjct: 342 TIVSTERDERSMAQWLSTLPIHNF---SATALGAAGTGAKVPSSLEGSEGDGDTD 393
>gi|403292192|ref|XP_003937138.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Saimiri
boliviensis boliviensis]
Length = 400
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 159/352 (45%), Positives = 232/352 (65%), Gaps = 16/352 (4%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 59 VVLLMAYSGKGYHGMQ----------RNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMR 108
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ + E IN HLP IRIL +KRVT GFNSKN
Sbjct: 109 KMSFQRCARTDKGVSAAGQVVSLKVWLIDGILEKINSHLPSHIRILGLKRVTGGFNSKNK 168
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA +D +D+ +RL+ + + LL +Y+GTHNFHNFTS++ P
Sbjct: 169 CDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLARYKGTHNFHNFTSQKGPQ 228
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+PS RYI+ CE+PFV++GLE +++KGQSFM+HQIRKMVG+ +AI +G+ + ++E
Sbjct: 229 EPSARRYILDMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLE 288
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V F+ + I P
Sbjct: 289 RSWGTEKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWVQEEGKVAAFKEQHIYP 348
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEED 346
++ TE E+ M WL L H+F A +AA QE ++G+ + D
Sbjct: 349 TIIGTERDERSMAQWLSTLPVHNFSATAFEAAGTGGKVPSPQEGSEGDGDTD 400
>gi|380016702|ref|XP_003692314.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Apis
florea]
Length = 391
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 152/335 (45%), Positives = 215/335 (64%), Gaps = 36/335 (10%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
++ Y G Y G+Q N+G KTIEG ++ AL KA F+T+D F + I+F
Sbjct: 51 VIVLGYLGKNYSGMQI----------NRGTKTIEGSLLSALLKADFITKDQFEDLKEIKF 100
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
QRAARTDKGVSA++QIVSL+LP NKE IN+HLP+ IR+ IKRVT+ FNSKN C+ART
Sbjct: 101 QRAARTDKGVSAVRQIVSLQLPNHVNKEDINKHLPKDIRVFDIKRVTRNFNSKNKCDART 160
Query: 122 YSYTCPTYAFATPQDT--------------------------KDDFRLTPDQFNFLQALL 155
Y Y PT+A A+ + ++FRLT D + L +L
Sbjct: 161 YRYVLPTFALASEDPSFLQMDKEEEIDEEKRLEKLSMINGKPYNEFRLTSDMLDKLNEIL 220
Query: 156 KQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRK 215
K +EGTHNFHNFTSK +P+DP RYI+ F C + F+ + +E L+++GQSFMLHQIRK
Sbjct: 221 KLFEGTHNFHNFTSKIRPMDPRAKRYIVYFRCIETFIANNMEFAILEVQGQSFMLHQIRK 280
Query: 216 MVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESL 275
M+ + + I R + D ++ F L++ D+P+APGLGL L VHY YN+++G+DG HE L
Sbjct: 281 MISLIIGICRNIITIDFVKDAFSLEKIDIPIAPGLGLSLHFVHYTYYNERFGKDGFHEML 340
Query: 276 HFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWL 310
++E ++E+ +F ++IL Y++ TEI++K +L WL
Sbjct: 341 DWNECNEEIEKFYKEYILKYIIDTEISDKVILYWL 375
>gi|397487065|ref|XP_003814633.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Pan
paniscus]
Length = 427
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 161/355 (45%), Positives = 232/355 (65%), Gaps = 19/355 (5%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 86 IVLLMAYSGKGYHGMQ----------RNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMR 135
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ E E IN HLP IRIL +KRVT GFNSKN
Sbjct: 136 KMSFQRCARTDKGVSAAGQVVSLKVWLIEDILEKINSHLPSHIRILGLKRVTGGFNSKNR 195
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA +D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P
Sbjct: 196 CDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQ 255
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
DPS RYI+ CE+PFV++GLE +++KGQSFM+HQIRKMVG+ +AI +G+ + ++E
Sbjct: 256 DPSACRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLE 315
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V F+ + I P
Sbjct: 316 RSWGTEKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWAQEEGKVAAFKEEHIYP 375
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEEDEED 349
++ TE E+ M WL L H+F +A A A G ++ +G E + + D
Sbjct: 376 TIIGTERDERSMAQWLSTLPIHNF---SATALTAGGTGAKVPSPLEGSEGDGDTD 427
>gi|426374727|ref|XP_004054216.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Gorilla
gorilla gorilla]
Length = 427
Score = 321 bits (823), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 160/355 (45%), Positives = 232/355 (65%), Gaps = 19/355 (5%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 86 IVLLMAYSGKGYHGMQ----------RNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMR 135
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ + E IN HLP IRIL +KRVT GFNSKN
Sbjct: 136 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRILGLKRVTGGFNSKNR 195
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA +D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P
Sbjct: 196 CDARTYCYLLPTFAFAHKDRDVQDESYRLSAETLQRVNRLLACYKGTHNFHNFTSQKGPQ 255
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
DPS RYI+ CE+PFV++GLE +++KGQSFM+HQIRKMVG+ +AI +G+ + ++E
Sbjct: 256 DPSACRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLE 315
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V F+ + I P
Sbjct: 316 RSWGTEKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWAQEEGKVAAFKEEHIYP 375
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEEDEED 349
++ TE E+ M WL L H+F +A A A G ++ +G E + + D
Sbjct: 376 TIIGTERDERSMAQWLSTLPIHNF---SATALTAGGTGAKVPSPLEGSEGDGDTD 427
>gi|410251032|gb|JAA13483.1| pseudouridylate synthase 1 [Pan troglodytes]
Length = 438
Score = 321 bits (822), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 160/355 (45%), Positives = 231/355 (65%), Gaps = 19/355 (5%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 97 IVLLMAYSGKGYHGMQ----------RNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMR 146
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ E E IN HLP IRIL +KRVT GFNSKN
Sbjct: 147 KMSFQRCARTDKGVSAAGQVVSLKVWLIEDILEKINSHLPSHIRILGLKRVTGGFNSKNR 206
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA +D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P
Sbjct: 207 CDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQ 266
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
DPS RYI+ CE+PFV++GLE +++KGQSFM+HQIRKMVG+ +AI +G+ + ++E
Sbjct: 267 DPSACRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLE 326
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V F+ + I P
Sbjct: 327 RSWGTEKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWAQEEGKVAAFKEEHIYP 386
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEEDEED 349
++ TE E+ M WL L H+F +A A G ++ +G E + + D
Sbjct: 387 TIIGTERDERSMAQWLSTLPIHNF---SATTLTAGGTGAKVPSPLEGSEGDGDTD 438
>gi|70166645|ref|NP_079491.2| tRNA pseudouridine synthase A, mitochondrial isoform 1 [Homo
sapiens]
gi|114152895|sp|Q9Y606.3|TRUA_HUMAN RecName: Full=tRNA pseudouridine synthase A, mitochondrial;
AltName: Full=tRNA pseudouridine(38-40) synthase;
AltName: Full=tRNA pseudouridylate synthase I; AltName:
Full=tRNA-uridine isomerase I; Flags: Precursor
gi|18027830|gb|AAL55876.1|AF318369_1 unknown [Homo sapiens]
gi|94466373|gb|AAH09505.2| Pseudouridylate synthase 1 [Homo sapiens]
gi|94466377|gb|AAH19320.2| Pseudouridylate synthase 1 [Homo sapiens]
gi|193786660|dbj|BAG51983.1| unnamed protein product [Homo sapiens]
gi|261860288|dbj|BAI46666.1| pseudouridylate synthase 1 [synthetic construct]
gi|311347138|gb|ADP90494.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347141|gb|ADP90496.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347144|gb|ADP90498.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347147|gb|ADP90500.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347150|gb|ADP90502.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347153|gb|ADP90504.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347156|gb|ADP90506.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347159|gb|ADP90508.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347162|gb|ADP90510.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347165|gb|ADP90512.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347168|gb|ADP90514.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347171|gb|ADP90516.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347174|gb|ADP90518.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347177|gb|ADP90520.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347180|gb|ADP90522.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347183|gb|ADP90524.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347186|gb|ADP90526.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347189|gb|ADP90528.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347192|gb|ADP90530.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347195|gb|ADP90532.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347198|gb|ADP90534.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347201|gb|ADP90536.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347204|gb|ADP90538.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347207|gb|ADP90540.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347210|gb|ADP90542.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347213|gb|ADP90544.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347216|gb|ADP90546.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347219|gb|ADP90548.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347222|gb|ADP90550.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347225|gb|ADP90552.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347228|gb|ADP90554.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347231|gb|ADP90556.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347234|gb|ADP90558.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347237|gb|ADP90560.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347240|gb|ADP90562.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347243|gb|ADP90564.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347246|gb|ADP90566.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347249|gb|ADP90568.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347252|gb|ADP90570.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347255|gb|ADP90572.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
Length = 427
Score = 320 bits (821), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 160/355 (45%), Positives = 232/355 (65%), Gaps = 19/355 (5%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 86 IVLLMAYSGKGYHGMQ----------RNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMR 135
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ + E IN HLP IRIL +KRVT GFNSKN
Sbjct: 136 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRILGLKRVTGGFNSKNR 195
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA +D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P
Sbjct: 196 CDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQ 255
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
DPS RYI+ CE+PFV++GLE +++KGQSFM+HQIRKMVG+ +AI +G+ + ++E
Sbjct: 256 DPSACRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLE 315
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V F+ + I P
Sbjct: 316 RSWGTEKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWAQEEGKVAAFKEEHIYP 375
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEEDEED 349
++ TE E+ M WL L H+F +A A A G ++ +G E + + D
Sbjct: 376 TIIGTERDERSMAQWLSTLPIHNF---SATALTAGGTGAKVPSPLEGSEGDGDTD 427
>gi|4455035|gb|AAD21042.1| pseudouridine synthase 1 [Homo sapiens]
Length = 365
Score = 320 bits (821), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 160/355 (45%), Positives = 232/355 (65%), Gaps = 19/355 (5%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 24 IVLLMAYSGKGYHGMQ----------RNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMR 73
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ + E IN HLP IRIL +KRVT GFNSKN
Sbjct: 74 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRILGLKRVTGGFNSKNR 133
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA +D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P
Sbjct: 134 CDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQ 193
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
DPS RYI+ CE+PFV++GLE +++KGQSFM+HQIRKMVG+ +AI +G+ + ++E
Sbjct: 194 DPSACRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLE 253
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V F+ + I P
Sbjct: 254 RSWGTEKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWAQEEGKVAAFKEEHIYP 313
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEEDEED 349
++ TE E+ M WL L H+F +A A A G ++ +G E + + D
Sbjct: 314 TIIGTERDERSMAQWLSTLPIHNF---SATALTAGGTGAKVPSPLEGSEGDGDTD 365
>gi|114647862|ref|XP_001139560.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Pan
troglodytes]
gi|410207876|gb|JAA01157.1| pseudouridylate synthase 1 [Pan troglodytes]
gi|410293160|gb|JAA25180.1| pseudouridylate synthase 1 [Pan troglodytes]
gi|410341825|gb|JAA39859.1| pseudouridylate synthase 1 [Pan troglodytes]
Length = 427
Score = 320 bits (821), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 160/355 (45%), Positives = 231/355 (65%), Gaps = 19/355 (5%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 86 IVLLMAYSGKGYHGMQ----------RNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMR 135
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ E E IN HLP IRIL +KRVT GFNSKN
Sbjct: 136 KMSFQRCARTDKGVSAAGQVVSLKVWLIEDILEKINSHLPSHIRILGLKRVTGGFNSKNR 195
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA +D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P
Sbjct: 196 CDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQ 255
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
DPS RYI+ CE+PFV++GLE +++KGQSFM+HQIRKMVG+ +AI +G+ + ++E
Sbjct: 256 DPSACRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLE 315
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V F+ + I P
Sbjct: 316 RSWGTEKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWAQEEGKVAAFKEEHIYP 375
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEEDEED 349
++ TE E+ M WL L H+F +A A G ++ +G E + + D
Sbjct: 376 TIIGTERDERSMAQWLSTLPIHNF---SATTLTAGGTGAKVPSPLEGSEGDGDTD 427
>gi|70166599|ref|NP_001002019.1| tRNA pseudouridine synthase A, mitochondrial isoform 2 [Homo
sapiens]
gi|70166634|ref|NP_001002020.1| tRNA pseudouridine synthase A, mitochondrial isoform 2 [Homo
sapiens]
gi|12804097|gb|AAH02901.1| Pseudouridylate synthase 1 [Homo sapiens]
gi|123989720|gb|ABM83888.1| pseudouridylate synthase 1 [synthetic construct]
gi|123999259|gb|ABM87208.1| pseudouridylate synthase 1 [synthetic construct]
gi|158257916|dbj|BAF84931.1| unnamed protein product [Homo sapiens]
gi|311347139|gb|ADP90495.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347142|gb|ADP90497.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347145|gb|ADP90499.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347148|gb|ADP90501.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347151|gb|ADP90503.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347154|gb|ADP90505.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347157|gb|ADP90507.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347160|gb|ADP90509.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347163|gb|ADP90511.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347166|gb|ADP90513.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347169|gb|ADP90515.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347172|gb|ADP90517.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347175|gb|ADP90519.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347178|gb|ADP90521.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347181|gb|ADP90523.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347184|gb|ADP90525.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347187|gb|ADP90527.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347190|gb|ADP90529.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347193|gb|ADP90531.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347196|gb|ADP90533.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347199|gb|ADP90535.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347202|gb|ADP90537.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347205|gb|ADP90539.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347208|gb|ADP90541.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347211|gb|ADP90543.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347214|gb|ADP90545.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347217|gb|ADP90547.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347220|gb|ADP90549.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347223|gb|ADP90551.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347226|gb|ADP90553.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347229|gb|ADP90555.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347232|gb|ADP90557.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347235|gb|ADP90559.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347238|gb|ADP90561.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347241|gb|ADP90563.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347244|gb|ADP90565.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347247|gb|ADP90567.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347250|gb|ADP90569.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347253|gb|ADP90571.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347256|gb|ADP90573.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
Length = 399
Score = 320 bits (821), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 160/355 (45%), Positives = 232/355 (65%), Gaps = 19/355 (5%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 58 IVLLMAYSGKGYHGMQ----------RNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMR 107
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ + E IN HLP IRIL +KRVT GFNSKN
Sbjct: 108 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRILGLKRVTGGFNSKNR 167
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA +D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P
Sbjct: 168 CDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQ 227
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
DPS RYI+ CE+PFV++GLE +++KGQSFM+HQIRKMVG+ +AI +G+ + ++E
Sbjct: 228 DPSACRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLE 287
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V F+ + I P
Sbjct: 288 RSWGTEKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWAQEEGKVAAFKEEHIYP 347
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEEDEED 349
++ TE E+ M WL L H+F +A A A G ++ +G E + + D
Sbjct: 348 TIIGTERDERSMAQWLSTLPIHNF---SATALTAGGTGAKVPSPLEGSEGDGDTD 399
>gi|119618938|gb|EAW98532.1| pseudouridylate synthase 1, isoform CRA_c [Homo sapiens]
Length = 432
Score = 320 bits (821), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 160/355 (45%), Positives = 232/355 (65%), Gaps = 19/355 (5%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 91 IVLLMAYSGKGYHGMQ----------RNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMR 140
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ + E IN HLP IRIL +KRVT GFNSKN
Sbjct: 141 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRILGLKRVTGGFNSKNR 200
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA +D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P
Sbjct: 201 CDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQ 260
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
DPS RYI+ CE+PFV++GLE +++KGQSFM+HQIRKMVG+ +AI +G+ + ++E
Sbjct: 261 DPSACRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLE 320
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V F+ + I P
Sbjct: 321 RSWGTEKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWAQEEGKVAAFKEEHIYP 380
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEEDEED 349
++ TE E+ M WL L H+F +A A A G ++ +G E + + D
Sbjct: 381 TIIGTERDERSMAQWLSTLPIHNF---SATALTAGGTGAKVPSPLEGSEGDGDTD 432
>gi|195055095|ref|XP_001994456.1| GH16145 [Drosophila grimshawi]
gi|193892219|gb|EDV91085.1| GH16145 [Drosophila grimshawi]
Length = 395
Score = 320 bits (820), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 161/326 (49%), Positives = 218/326 (66%), Gaps = 16/326 (4%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ +Y G Y+G+Q RN GM+TIE ++ +A+ K ++TEDSF Q F
Sbjct: 61 AILLSYCGANYYGMQ----------RNPGMQTIEEELFKAMLKHNWITEDSFKQVQIASF 110
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
QRAARTDKGVSA +Q+ S+KLP+E + A N+ LPE IR+ ++RVTKGFN+K CNART
Sbjct: 111 QRAARTDKGVSAARQVCSIKLPDELDLVAFNKDLPETIRLFGVERVTKGFNAKEQCNART 170
Query: 122 YSYTCPTYAFA--TPQDTKDD---FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDP 176
Y+YT P+ AFA Q + D FRLTP + LK YEGT NFHNFTSK+ LDP
Sbjct: 171 YTYTLPSIAFAGCNEQQNQQDQATFRLTPALHEQICETLKLYEGTKNFHNFTSKKNFLDP 230
Query: 177 SCSRYIMSFDCEQPF-VKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
S R+IMSF PF G+E +TL++KGQSFMLHQIRKMVG+A+AI RG T++ +E+
Sbjct: 231 SAKRFIMSFTSSAPFHSPQGIEFVTLQVKGQSFMLHQIRKMVGLAIAIVRGNTTRITLER 290
Query: 236 TFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPY 295
++ DLPMAPGLGL+L+ VHY+ YN +YG+DG+H+ L + +++V +F I
Sbjct: 291 ALTEERLDLPMAPGLGLVLDTVHYERYNDRYGKDGIHKPLTWSVQEQQVTQFIELHIYSN 350
Query: 296 LVKTEITEKPMLAWLELLADHSFETR 321
+ +TE + ML WL L HS++TR
Sbjct: 351 IYRTEAEQCNMLDWLSTLHFHSYDTR 376
>gi|328780691|ref|XP_624092.3| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Apis
mellifera]
Length = 389
Score = 320 bits (820), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 153/335 (45%), Positives = 215/335 (64%), Gaps = 36/335 (10%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
M+ Y G Y G+Q N+G+KTIEG ++ AL KA F+T++ F + I+F
Sbjct: 50 VMVLGYLGKNYSGMQI----------NRGIKTIEGSLLSALLKADFITKNEFEDLKEIKF 99
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
QRAARTDKGVSA++QIVSL+LP NKE IN+HLP+ I++ IKRVT+ FNSKN C+ART
Sbjct: 100 QRAARTDKGVSAVRQIVSLQLPNHVNKEDINKHLPKDIKVFDIKRVTRNFNSKNKCDART 159
Query: 122 YSYTCPTYAFATPQ------------------------DTK--DDFRLTPDQFNFLQALL 155
Y Y PT+A A+ D K ++FRL D + L +L
Sbjct: 160 YRYVLPTFALASEDPSFLQMDKEEEIDEEKRLEKLSMIDGKPYNEFRLNSDMLDKLNEIL 219
Query: 156 KQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRK 215
K +EGTHNFHNFTSK +P+DP RYI+ F C + F+ + +E + L+++GQSFMLHQIRK
Sbjct: 220 KLFEGTHNFHNFTSKIRPMDPRAKRYIVYFRCIETFIANNMEFVVLEVQGQSFMLHQIRK 279
Query: 216 MVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESL 275
MV + + I R + D ++ F L++ D+P+APGLGL L VHY YN++YG+DG HE L
Sbjct: 280 MVSLIIGICRNIITIDFVKDAFSLEKVDIPIAPGLGLSLHFVHYTYYNERYGKDGFHEML 339
Query: 276 HFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWL 310
++E ++E+ +F ++IL Y+ TEI++K + WL
Sbjct: 340 DWNECNEEIEKFYKEYILKYITDTEISDKVVFYWL 374
>gi|332254114|ref|XP_003276176.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Nomascus
leucogenys]
Length = 421
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 158/352 (44%), Positives = 233/352 (66%), Gaps = 12/352 (3%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ ++ AYSG GY G+Q + L L +TIE D++ AL ++G + E+ + +
Sbjct: 79 IVLLMAYSGKGYHGMQWRNLGSLQ------AQTIEDDLVSALVRSGCIPENHGEDMRKMS 132
Query: 61 FQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
FQR ARTDKGVSA Q+VSLK+ + E IN HLP IRIL +KRVT GFNSKN C+A
Sbjct: 133 FQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRILGLKRVTGGFNSKNRCDA 192
Query: 120 RTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPS 177
RTY Y PT+AFA +D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P +PS
Sbjct: 193 RTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQEPS 252
Query: 178 CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTF 237
RYI+ CE+PFV++GLE +++KGQSFM+HQIRKMVG+ +AI +G+ + ++E+++
Sbjct: 253 ARRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSW 312
Query: 238 GLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLV 297
G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V F+ + I P ++
Sbjct: 313 GSEKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWVQEEGKVAAFKEEHIYPTII 372
Query: 298 KTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEEDEED 349
TE E+ M WL L H+F +A A AA G ++ +G E + + D
Sbjct: 373 STERDERSMAQWLSTLPVHNF---SATALTAAGTGAKVPSPLEGSEGDGDTD 421
>gi|70906472|ref|NP_001020733.1| tRNA pseudouridine synthase A, mitochondrial isoform 3 [Mus
musculus]
gi|4455033|gb|AAD21041.1| pseudouridine synthase 1 [Mus musculus]
gi|11464734|gb|AAG35308.1| pseudouridine synthase 1 [Mus musculus]
gi|148688058|gb|EDL20005.1| pseudouridine synthase 1, isoform CRA_c [Mus musculus]
Length = 393
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 160/352 (45%), Positives = 231/352 (65%), Gaps = 16/352 (4%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G +TIE D++ AL +AG + E+ +
Sbjct: 52 IVLLMAYSGKGYHGMQ----------RNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMR 101
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ + + IN HLP IRIL +KRVT GFNSKN
Sbjct: 102 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDILDKINSHLPSHIRILGLKRVTGGFNSKNK 161
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA +D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P
Sbjct: 162 CDARTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPR 221
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+PS RYI+ CE+PFV++GLE +K+KGQSFM+HQIRKMVG+ +AI +G+ + ++E
Sbjct: 222 EPSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLE 281
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V F+ ++I P
Sbjct: 282 RSWGEEKVDVPKAPGLGLVLERVHFEKYNQRFGGDGLHEPLDWTQEEGKVTAFKEQYIYP 341
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEED 346
+V TE E+ M WL L H+F A AA A E ++G+ + D
Sbjct: 342 TIVSTERDERSMAQWLNTLPIHNFSGTALGAADTGAKVPSSLEGSEGDGDTD 393
>gi|383413803|gb|AFH30115.1| tRNA pseudouridine synthase A, mitochondrial isoform 1 [Macaca
mulatta]
gi|384942394|gb|AFI34802.1| tRNA pseudouridine synthase A, mitochondrial isoform 1 [Macaca
mulatta]
Length = 427
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 160/355 (45%), Positives = 232/355 (65%), Gaps = 19/355 (5%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 86 IVLLMAYSGKGYHGMQ----------RNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMR 135
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ + E IN HLP IRIL +KRVT GFNSKN
Sbjct: 136 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRILGLKRVTGGFNSKNR 195
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA +D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P
Sbjct: 196 CDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQ 255
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+PS RYI+ CE+PFV++GLE +++KGQSFM+HQIRKMVG+ +AI +G+ + ++E
Sbjct: 256 EPSARRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLE 315
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V F+ + I P
Sbjct: 316 RSWGTEKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWVQEEGKVAAFKEEHIYP 375
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEEDEED 349
++ TE E+ M WL L H+F +A A AA G ++ G E + + D
Sbjct: 376 TIIGTERDERSMAQWLSTLPVHNF---SATALTAAGTGAKVPSPLGGSEGDGDTD 427
>gi|26354378|dbj|BAC40817.1| unnamed protein product [Mus musculus]
Length = 393
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 160/352 (45%), Positives = 231/352 (65%), Gaps = 16/352 (4%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G +TIE D++ AL +AG + E+ +
Sbjct: 52 IVLLMAYSGKGYHGMQ----------RNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMR 101
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ + + IN HLP IRIL +KRVT GFNSKN
Sbjct: 102 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDILDKINSHLPSHIRILGLKRVTGGFNSKNK 161
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA +D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P
Sbjct: 162 CDARTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPR 221
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+PS RYI+ CE+PFV++GLE +K+KGQSFM+HQIRKMVG+ +AI +G+ + ++E
Sbjct: 222 EPSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLE 281
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V F+ ++I P
Sbjct: 282 RSWGEEKVDVPKAPGLGLVLERVHFEKYNQRFGGDGLHEPLDWTQEEGKVTAFKEQYIYP 341
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEED 346
+V TE E+ M WL L H+F A AA A E ++G+ + D
Sbjct: 342 TIVSTERDERSMAQWLNTLPIHNFSGTALGAADTGAKVPSSLEGSEGDGDTD 393
>gi|109099290|ref|XP_001113470.1| PREDICTED: tRNA pseudouridine synthase A-like [Macaca mulatta]
Length = 483
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 160/355 (45%), Positives = 232/355 (65%), Gaps = 19/355 (5%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 142 IVLLMAYSGKGYHGMQ----------RNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMR 191
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ + E IN HLP IRIL +KRVT GFNSKN
Sbjct: 192 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRILGLKRVTGGFNSKNR 251
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA +D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P
Sbjct: 252 CDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQ 311
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+PS RYI+ CE+PFV++GLE +++KGQSFM+HQIRKMVG+ +AI +G+ + ++E
Sbjct: 312 EPSARRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLE 371
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V F+ + I P
Sbjct: 372 RSWGTEKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWVQEEGKVAAFKEEHIYP 431
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEEDEED 349
++ TE E+ M WL L H+F +A A AA G ++ G E + + D
Sbjct: 432 TIIGTERDERSMAQWLSTLPVHNF---SATALTAAGTGAKVPSPLGGSEGDGDTD 483
>gi|70906470|ref|NP_062674.2| tRNA pseudouridine synthase A, mitochondrial isoform 2 [Mus
musculus]
gi|114152896|sp|Q9WU56.2|TRUA_MOUSE RecName: Full=tRNA pseudouridine synthase A, mitochondrial;
AltName: Full=tRNA pseudouridine(38-40) synthase;
AltName: Full=tRNA pseudouridylate synthase I; AltName:
Full=tRNA-uridine isomerase I; Flags: Precursor
gi|112180429|gb|AAH34359.2| Pseudouridine synthase 1 [Mus musculus]
gi|148688056|gb|EDL20003.1| pseudouridine synthase 1, isoform CRA_a [Mus musculus]
Length = 423
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 160/352 (45%), Positives = 231/352 (65%), Gaps = 16/352 (4%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G +TIE D++ AL +AG + E+ +
Sbjct: 82 IVLLMAYSGKGYHGMQ----------RNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMR 131
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ + + IN HLP IRIL +KRVT GFNSKN
Sbjct: 132 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDILDKINSHLPSHIRILGLKRVTGGFNSKNK 191
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA +D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P
Sbjct: 192 CDARTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPR 251
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+PS RYI+ CE+PFV++GLE +K+KGQSFM+HQIRKMVG+ +AI +G+ + ++E
Sbjct: 252 EPSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLE 311
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V F+ ++I P
Sbjct: 312 RSWGEEKVDVPKAPGLGLVLERVHFEKYNQRFGGDGLHEPLDWTQEEGKVTAFKEQYIYP 371
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEED 346
+V TE E+ M WL L H+F A AA A E ++G+ + D
Sbjct: 372 TIVSTERDERSMAQWLNTLPIHNFSGTALGAADTGAKVPSSLEGSEGDGDTD 423
>gi|148688059|gb|EDL20006.1| pseudouridine synthase 1, isoform CRA_d [Mus musculus]
Length = 402
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 160/352 (45%), Positives = 231/352 (65%), Gaps = 16/352 (4%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G +TIE D++ AL +AG + E+ +
Sbjct: 61 IVLLMAYSGKGYHGMQ----------RNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMR 110
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ + + IN HLP IRIL +KRVT GFNSKN
Sbjct: 111 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDILDKINSHLPSHIRILGLKRVTGGFNSKNK 170
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA +D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P
Sbjct: 171 CDARTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPR 230
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+PS RYI+ CE+PFV++GLE +K+KGQSFM+HQIRKMVG+ +AI +G+ + ++E
Sbjct: 231 EPSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLE 290
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V F+ ++I P
Sbjct: 291 RSWGEEKVDVPKAPGLGLVLERVHFEKYNQRFGGDGLHEPLDWTQEEGKVTAFKEQYIYP 350
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEED 346
+V TE E+ M WL L H+F A AA A E ++G+ + D
Sbjct: 351 TIVSTERDERSMAQWLNTLPIHNFSGTALGAADTGAKVPSSLEGSEGDGDTD 402
>gi|112180395|gb|AAH21446.2| Pseudouridine synthase 1 [Mus musculus]
Length = 423
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 160/352 (45%), Positives = 231/352 (65%), Gaps = 16/352 (4%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G +TIE D++ AL +AG + E+ +
Sbjct: 82 IVLLMAYSGKGYHGMQ----------RNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMR 131
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ + + IN HLP IRIL +KRVT GFNSKN
Sbjct: 132 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDILDKINSHLPSHIRILGLKRVTGGFNSKNK 191
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA +D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P
Sbjct: 192 CDARTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPR 251
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+PS RYI+ CE+PFV++GLE +K+KGQSFM+HQIRKMVG+ +AI +G+ + ++E
Sbjct: 252 EPSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLE 311
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V F+ ++I P
Sbjct: 312 RSWGEEKVDVPKAPGLGLVLERVHFEKYNQRFGGDGLHEPLDWTQEEGKVTAFKEQYIYP 371
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEED 346
+V TE E+ M WL L H+F A AA A E ++G+ + D
Sbjct: 372 TIVSTERDERSMAQWLNTLPIHNFSGTALGAADTVAKVPSSLEGSEGDGDTD 423
>gi|355564836|gb|EHH21336.1| hypothetical protein EGK_04370, partial [Macaca mulatta]
Length = 379
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 160/355 (45%), Positives = 232/355 (65%), Gaps = 19/355 (5%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 38 IVLLMAYSGKGYHGMQ----------RNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMR 87
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ + E IN HLP IRIL +KRVT GFNSKN
Sbjct: 88 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRILGLKRVTGGFNSKNR 147
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA +D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P
Sbjct: 148 CDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQ 207
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+PS RYI+ CE+PFV++GLE +++KGQSFM+HQIRKMVG+ +AI +G+ + ++E
Sbjct: 208 EPSARRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLE 267
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V F+ + I P
Sbjct: 268 RSWGTEKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWVQEEGKVAAFKEEHIYP 327
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEEDEED 349
++ TE E+ M WL L H+F +A A AA G ++ G E + + D
Sbjct: 328 TIIGTERDERSMAQWLSTLPVHNF---SATALTAAGTGAKVPSPLGGSEGDGDTD 379
>gi|380795213|gb|AFE69482.1| tRNA pseudouridine synthase A, mitochondrial isoform 2, partial
[Macaca mulatta]
Length = 374
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 160/355 (45%), Positives = 232/355 (65%), Gaps = 19/355 (5%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 33 IVLLMAYSGKGYHGMQ----------RNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMR 82
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ + E IN HLP IRIL +KRVT GFNSKN
Sbjct: 83 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRILGLKRVTGGFNSKNR 142
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA +D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P
Sbjct: 143 CDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQ 202
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+PS RYI+ CE+PFV++GLE +++KGQSFM+HQIRKMVG+ +AI +G+ + ++E
Sbjct: 203 EPSARRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLE 262
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V F+ + I P
Sbjct: 263 RSWGTEKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWVQEEGKVAAFKEEHIYP 322
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEEDEED 349
++ TE E+ M WL L H+F +A A AA G ++ G E + + D
Sbjct: 323 TIIGTERDERSMAQWLSTLPVHNF---SATALTAAGTGAKVPSPLGGSEGDGDTD 374
>gi|296213295|ref|XP_002753209.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Callithrix
jacchus]
Length = 428
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 154/324 (47%), Positives = 220/324 (67%), Gaps = 16/324 (4%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 87 VVLLMAYSGKGYHGMQ----------RNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMR 136
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ + E IN HLP IRIL +KRVT GFNSKN
Sbjct: 137 KMSFQRCARTDKGVSAAGQVVSLKVWLIDGILEKINRHLPSHIRILGLKRVTGGFNSKNK 196
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA +D +D+ +RL+ + + LL YEGTHNFHNFTS++ P
Sbjct: 197 CDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYEGTHNFHNFTSQKGPQ 256
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+PS RYI+ CE+PFV++GLE +++KGQSFM+HQIRKMVG+ +AI +G+ + L+E
Sbjct: 257 EPSARRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESLLE 316
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V F+ ++I P
Sbjct: 317 RSWGTEKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWAQEEGKVAAFKEEYIYP 376
Query: 295 YLVKTEITEKPMLAWLELLADHSF 318
++ TE E+ M WL L H+F
Sbjct: 377 TIIGTERNERSMAQWLSTLPIHNF 400
>gi|395840212|ref|XP_003792958.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Otolemur
garnettii]
Length = 430
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 161/352 (45%), Positives = 229/352 (65%), Gaps = 16/352 (4%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AY+G GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 89 IVLLVAYAGKGYHGMQ----------RNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMR 138
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ + E IN HLP IRIL +KRVT GFNSKN
Sbjct: 139 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRILGLKRVTGGFNSKNK 198
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA +D +D+ +RL+P+ + LL Y+GTHNFHNFTS++ P
Sbjct: 199 CDARTYCYMLPTFAFAHKDRDVQDETYRLSPETLQRVNRLLACYKGTHNFHNFTSQKGPR 258
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+PS RYI+ CE+PF ++GLE +K+KGQSFM+HQIRKMVG+ +AI +G+ + ++E
Sbjct: 259 EPSAQRYILEMFCEEPFEREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLE 318
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V F+ + I P
Sbjct: 319 RSWGEEKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWAQEEGKVAAFKEEHIYP 378
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEED 346
+V TE E+ M WL L H F A AA QE + G+E+ D
Sbjct: 379 TIVSTERDERSMAQWLSTLPVHDFSATALAAAGTGTKASSPQEGSGGDEDTD 430
>gi|417410428|gb|JAA51687.1| Putative pseudouridylate synthase, partial [Desmodus rotundus]
Length = 402
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 161/352 (45%), Positives = 228/352 (64%), Gaps = 16/352 (4%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ M+ AYSG GY G+Q RN G KTIE D++ AL ++G + E +
Sbjct: 61 IVMLLAYSGKGYHGMQ----------RNVGSSQFKTIEDDLVSALVRSGCIPESHGEDMR 110
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ + E IN HLP IRIL +KRVT GFNSKN
Sbjct: 111 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRILGLKRVTGGFNSKNR 170
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA +D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P
Sbjct: 171 CDARTYVYMLPTFAFAHKDRDAQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPR 230
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+PS RY++ CE+PF +DG+E +K+KGQSFM HQIRKMVG+ +AIA+G+ +DL++
Sbjct: 231 EPSAQRYVLDVFCEEPFERDGMEFAVVKVKGQSFMTHQIRKMVGLVVAIAKGYAPEDLLQ 290
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G + D+P APGLGL+LE+VH++ YN+++G DG+HE L + + E F+ + I P
Sbjct: 291 RSWGEAKVDVPKAPGLGLVLERVHFETYNRRFGCDGLHEPLDWAREEAEAAAFKEQHIYP 350
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEED 346
++ TE E+ M WL L H+F A AA +A QE ++G+ + D
Sbjct: 351 TIISTERHERSMAQWLSTLPAHNFSATAHAAASPSAKVPSPQEGSEGDADSD 402
>gi|395513517|ref|XP_003760970.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial
[Sarcophilus harrisii]
Length = 410
Score = 318 bits (814), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 155/337 (45%), Positives = 225/337 (66%), Gaps = 16/337 (4%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 68 IVLLMAYSGKGYHGMQ----------RNLGSSQFKTIEDDLVSALVQSGCIPENHGEDMK 117
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPEEANK-EAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA QIVSLK+ N E IN HLP IRIL +KRVT FNSKN
Sbjct: 118 KMSFQRCARTDKGVSAAGQIVSLKVWLIDNILEKINSHLPSHIRILGLKRVTGSFNSKNR 177
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA D +D+ +RL+P+ + LL Y+GTHNFHNFTS++ P
Sbjct: 178 CDARTYFYMLPTFAFAHKDHDIQDERYRLSPETLEKVNQLLAGYKGTHNFHNFTSQKGPK 237
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+PS RYIM CE PF+++G+E +KIKGQSFM+HQIRKM+G+ +A+ +G+ + ++E
Sbjct: 238 EPSARRYIMEMHCEAPFMREGMEFAVIKIKGQSFMMHQIRKMIGLVIAVLKGYVPESVME 297
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G ++ D+P APGLGL+LE+VH++ YN+++G DG+HE L + E ++++ F+ ++I P
Sbjct: 298 RSWGEEKVDIPKAPGLGLVLERVHFEQYNRRFGNDGLHEPLDWVEEEEKMTVFKEQYIYP 357
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAALAAAN 331
++KTE+ E M WL L +H F+ + +A N
Sbjct: 358 TIIKTEMEEHSMTNWLNTLPNHDFDAGSQEAKADDGN 394
>gi|345323862|ref|XP_001510884.2| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Ornithorhynchus anatinus]
Length = 403
Score = 318 bits (814), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 155/327 (47%), Positives = 222/327 (67%), Gaps = 14/327 (4%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ ++ AYSG GY+G+Q + KTIE D++ AL ++G + E+ + + +
Sbjct: 59 IVLLMAYSGKGYYGMQR-------HVGSSQFKTIEDDLVSALVQSGCIPENHGDDMKKMS 111
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK-EAINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
FQR ARTDKGVSA QIVSLK+ N E IN HLP QIRIL +KRVT GFNSKNNC A
Sbjct: 112 FQRCARTDKGVSAAGQIVSLKVWLIDNILEKINSHLPSQIRILGLKRVTGGFNSKNNCTA 171
Query: 120 RTYSYTCPTYAFA----TPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
RTY Y PT AFA PQD + +RL+P+ + LL Y+GTH+FHNFTS++ P D
Sbjct: 172 RTYFYMLPTLAFAHKDHDPQD--ETYRLSPEVLERVNRLLACYKGTHHFHNFTSQKGPKD 229
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
S RYIM CE+PFV++G+E +K+KGQSFM+HQIRKM+G+ +AI +G+ + ++E+
Sbjct: 230 ASGMRYIMEMYCEEPFVREGMEFAVIKVKGQSFMMHQIRKMIGLVIAIVKGYADQSVMER 289
Query: 236 TFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPY 295
++G ++ D+P APGLGL+LE+VH++ YN+++G DG+HE L + E ++++ F+ ++I
Sbjct: 290 SWGEEKVDIPKAPGLGLVLERVHFESYNRRFGNDGLHEPLDWVEEEEKMTIFKEQYIYST 349
Query: 296 LVKTEITEKPMLAWLELLADHSFETRA 322
++KTE+ EK M+ WL L H F A
Sbjct: 350 IIKTEMEEKSMVNWLNTLPIHDFTATA 376
>gi|402888179|ref|XP_003907451.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Papio
anubis]
Length = 427
Score = 318 bits (814), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 159/355 (44%), Positives = 231/355 (65%), Gaps = 19/355 (5%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 86 IVLLMAYSGKGYHGMQ----------RNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMR 135
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ + E IN HLP IRIL +KRVT GFNSKN
Sbjct: 136 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRILGLKRVTGGFNSKNR 195
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA +D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P
Sbjct: 196 CDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQ 255
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+PS RYI+ CE+PFV++GLE +++KGQSFM+HQIRKMVG+ +AI +G+ + ++E
Sbjct: 256 EPSARRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLE 315
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V F+ + I P
Sbjct: 316 RSWGTEKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWVQEEGKVAAFKEEHIYP 375
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEEDEED 349
++ TE E+ M WL L H+F +A AA G ++ G E + + D
Sbjct: 376 TIIGTERDERSMAQWLSTLPVHNF---SATTLTAAGTGAKVPSPLGGSEGDGDTD 427
>gi|119618936|gb|EAW98530.1| pseudouridylate synthase 1, isoform CRA_a [Homo sapiens]
gi|119618939|gb|EAW98533.1| pseudouridylate synthase 1, isoform CRA_a [Homo sapiens]
Length = 338
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 160/351 (45%), Positives = 229/351 (65%), Gaps = 19/351 (5%)
Query: 5 FAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
AYSG GY G+Q RN G KTIE D++ AL ++G + E+ + + F
Sbjct: 1 MAYSGKGYHGMQ----------RNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSF 50
Query: 62 QRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNAR 120
QR ARTDKGVSA Q+VSLK+ + E IN HLP IRIL +KRVT GFNSKN C+AR
Sbjct: 51 QRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRILGLKRVTGGFNSKNRCDAR 110
Query: 121 TYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSC 178
TY Y PT+AFA +D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P DPS
Sbjct: 111 TYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQDPSA 170
Query: 179 SRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFG 238
RYI+ CE+PFV++GLE +++KGQSFM+HQIRKMVG+ +AI +G+ + ++E+++G
Sbjct: 171 CRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWG 230
Query: 239 LDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVK 298
++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V F+ + I P ++
Sbjct: 231 TEKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWAQEEGKVAAFKEEHIYPTIIG 290
Query: 299 TEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEEDEED 349
TE E+ M WL L H+F +A A A G ++ +G E + + D
Sbjct: 291 TERDERSMAQWLSTLPIHNF---SATALTAGGTGAKVPSPLEGSEGDGDTD 338
>gi|149063707|gb|EDM14030.1| pseudouridine synthase 1, isoform CRA_a [Rattus norvegicus]
Length = 393
Score = 317 bits (813), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 159/352 (45%), Positives = 230/352 (65%), Gaps = 16/352 (4%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G +TIE D++ AL +AG + E+ +
Sbjct: 52 IVLLMAYSGKGYHGMQ----------RNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMR 101
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ + + IN HLP IRIL +KRVT GFNSKN
Sbjct: 102 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDILDKINSHLPSHIRILGLKRVTGGFNSKNK 161
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA +D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P
Sbjct: 162 CDARTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLGCYKGTHNFHNFTSQKGPR 221
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+PS RYI+ CE+PFV++GLE +K+KGQSFM+HQIRKMVG+ +AI +G+ + ++E
Sbjct: 222 EPSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLE 281
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V F+ ++I P
Sbjct: 282 RSWGEEKVDVPKAPGLGLVLERVHFEKYNQRFGSDGLHEPLDWAQEEGKVTAFKEQYIYP 341
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEED 346
+V TE E+ M WL L H+F A A A E ++G+ + D
Sbjct: 342 TIVSTERDERSMAQWLNTLPIHNFSGTALGADDTGAKVPSSLEGSEGDGDTD 393
>gi|70906466|ref|NP_001020734.1| tRNA pseudouridine synthase A, mitochondrial [Rattus norvegicus]
gi|182676393|sp|Q4KM92.2|TRUA_RAT RecName: Full=tRNA pseudouridine synthase A, mitochondrial;
AltName: Full=tRNA pseudouridine(38-40) synthase;
AltName: Full=tRNA pseudouridylate synthase I; AltName:
Full=tRNA-uridine isomerase I; Flags: Precursor
gi|149063708|gb|EDM14031.1| pseudouridine synthase 1, isoform CRA_b [Rattus norvegicus]
gi|171847186|gb|AAI61821.1| Pseudouridylate synthase 1 [Rattus norvegicus]
Length = 423
Score = 317 bits (812), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 159/352 (45%), Positives = 230/352 (65%), Gaps = 16/352 (4%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G +TIE D++ AL +AG + E+ +
Sbjct: 82 IVLLMAYSGKGYHGMQ----------RNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMR 131
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ + + IN HLP IRIL +KRVT GFNSKN
Sbjct: 132 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDILDKINSHLPSHIRILGLKRVTGGFNSKNK 191
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA +D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P
Sbjct: 192 CDARTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLGCYKGTHNFHNFTSQKGPR 251
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+PS RYI+ CE+PFV++GLE +K+KGQSFM+HQIRKMVG+ +AI +G+ + ++E
Sbjct: 252 EPSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLE 311
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V F+ ++I P
Sbjct: 312 RSWGEEKVDVPKAPGLGLVLERVHFEKYNQRFGSDGLHEPLDWAQEEGKVTAFKEQYIYP 371
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEED 346
+V TE E+ M WL L H+F A A A E ++G+ + D
Sbjct: 372 TIVSTERDERSMAQWLNTLPIHNFSGTALGADDTGAKVPSSLEGSEGDGDTD 423
>gi|355786664|gb|EHH66847.1| hypothetical protein EGM_03911, partial [Macaca fascicularis]
Length = 363
Score = 317 bits (812), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 159/349 (45%), Positives = 229/349 (65%), Gaps = 19/349 (5%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 22 IVLLMAYSGKGYHGMQ----------RNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMR 71
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ + E IN HLP IRIL +KRVT GFNSKN
Sbjct: 72 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRILGLKRVTGGFNSKNR 131
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA +D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P
Sbjct: 132 CDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQ 191
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+PS RYI+ CE+PFV++GLE +++KGQSFM+HQIRKMVG+ +AI +G+ + ++E
Sbjct: 192 EPSARRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLE 251
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V F+ + I P
Sbjct: 252 RSWGTEKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWVQEEGKVAAFKEEHIYP 311
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEE 343
++ TE E+ M WL L H+F +A A AA G ++ G E
Sbjct: 312 TIIGTERDERSMAQWLSTLPVHNF---SATALTAAGTGAKVPSPLGGSE 357
>gi|297693488|ref|XP_002824050.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Pongo
abelii]
Length = 424
Score = 317 bits (812), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 159/355 (44%), Positives = 231/355 (65%), Gaps = 19/355 (5%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 83 IVLLMAYSGKGYHGMQ----------RNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMR 132
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPEEANK-EAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ N E IN HLP IRIL +KRVT GFNSKN
Sbjct: 133 KMSFQRCARTDKGVSAAGQVVSLKVWLIDNILEKINSHLPSHIRILGLKRVTGGFNSKNR 192
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA +D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P
Sbjct: 193 CDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQ 252
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+PS RYI+ CE+PFV++GLE +++KGQSFM+HQIRKMVG+ +AI +G+ + ++E
Sbjct: 253 EPSARRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPECVLE 312
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V F+ + I P
Sbjct: 313 RSWGTEKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWVQEEGKVAAFKEEHIYP 372
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEEDEED 349
++ TE E+ M WL L H+F +A A G ++ +G E + + D
Sbjct: 373 TIIGTERDERSMAQWLSTLPIHNF---SATTLTAGGTGAKVPSPLEGSEGDGDTD 424
>gi|149063709|gb|EDM14032.1| pseudouridine synthase 1, isoform CRA_c [Rattus norvegicus]
Length = 402
Score = 317 bits (812), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 159/352 (45%), Positives = 230/352 (65%), Gaps = 16/352 (4%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G +TIE D++ AL +AG + E+ +
Sbjct: 61 IVLLMAYSGKGYHGMQ----------RNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMR 110
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ + + IN HLP IRIL +KRVT GFNSKN
Sbjct: 111 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDILDKINSHLPSHIRILGLKRVTGGFNSKNK 170
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA +D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P
Sbjct: 171 CDARTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLGCYKGTHNFHNFTSQKGPR 230
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+PS RYI+ CE+PFV++GLE +K+KGQSFM+HQIRKMVG+ +AI +G+ + ++E
Sbjct: 231 EPSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLE 290
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V F+ ++I P
Sbjct: 291 RSWGEEKVDVPKAPGLGLVLERVHFEKYNQRFGSDGLHEPLDWAQEEGKVTAFKEQYIYP 350
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEED 346
+V TE E+ M WL L H+F A A A E ++G+ + D
Sbjct: 351 TIVSTERDERSMAQWLNTLPIHNFSGTALGADDTGAKVPSSLEGSEGDGDTD 402
>gi|76638649|ref|XP_593895.2| PREDICTED: tRNA pseudouridine synthase A, mitochondrial isoform 1
[Bos taurus]
gi|297484682|ref|XP_002694500.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Bos
taurus]
gi|296478661|tpg|DAA20776.1| TPA: pseudouridylate synthase 1 [Bos taurus]
gi|440909768|gb|ELR59645.1| tRNA pseudouridine synthase A, mitochondrial [Bos grunniens mutus]
Length = 433
Score = 317 bits (812), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 160/352 (45%), Positives = 223/352 (63%), Gaps = 16/352 (4%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 92 IVLLMAYSGKGYHGMQ----------RNVGSSKFKTIEDDLVSALVRSGCIPENHGEDMR 141
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ + E IN HLP IRIL +KRVT GFNSKN
Sbjct: 142 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRILGLKRVTGGFNSKNK 201
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA D++D+ +RL+ + + LL Y+GTHNFHNFTS++ P
Sbjct: 202 CDARTYVYMLPTFAFAHKDHDSQDETYRLSAETLGRVNRLLACYKGTHNFHNFTSQKGPH 261
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+PS RYI+ CE+PFV++G+E +K+KGQSFM HQIRKMVG+ +AI +G+ + ++E
Sbjct: 262 EPSARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLVVAIVKGYAPESVLE 321
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+ +G + D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + EV F+ + I P
Sbjct: 322 RCWGEAKVDVPKAPGLGLVLERVHFEKYNQRFGHDGLHEPLDWAREEAEVTAFKEQHIYP 381
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEED 346
++ TE E+ M WL L H F A AA E +DG + D
Sbjct: 382 TIISTERQERSMAQWLSTLPMHDFSATAHAAAGLGTKAPSSLEGSDGVGDSD 433
>gi|350416759|ref|XP_003491089.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Bombus impatiens]
Length = 399
Score = 317 bits (812), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 152/336 (45%), Positives = 214/336 (63%), Gaps = 38/336 (11%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
+M +Y G Y G+Q N+G KTIE ++ AL KA F+T++ F + I+F
Sbjct: 53 VIMLSYVGKNYCGMQI----------NRGRKTIEESLLSALLKANFITKEQFEDVREIKF 102
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
QRAARTDKGVSA++Q+VSL+LP+ NKE IN++LP+ IR+ +KRVT+ FNSK C+ART
Sbjct: 103 QRAARTDKGVSAVRQVVSLQLPDYVNKEDINQYLPKDIRVFDVKRVTRTFNSKTKCDART 162
Query: 122 YSYTCPTYAFATPQDTK---------------------------DDFRLTPDQFNFLQAL 154
Y Y PT+ A P+D+ +FRLTP+ + L +
Sbjct: 163 YRYVLPTFVLA-PEDSNVLQIDEEEEVNEEQRLKQLSMIDGKPYHEFRLTPEMLDKLNEI 221
Query: 155 LKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIR 214
LK EGTHNFHNFTSK KPLDP RYI+ F C + F+ + +E L+IKGQSFMLHQIR
Sbjct: 222 LKLLEGTHNFHNFTSKTKPLDPRAKRYIIYFRCVETFIANNMEFAVLEIKGQSFMLHQIR 281
Query: 215 KMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHES 274
KMV + + I R + D+I+ F +++ D+P+APGLGL L VHY+ YN+K+G+DG H++
Sbjct: 282 KMVSLVIGICRNIVTSDIIKDVFSVEKIDIPIAPGLGLSLHFVHYEYYNEKFGKDGFHKT 341
Query: 275 LHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWL 310
L + E + +V++F + IL ++ EI+EK M+ WL
Sbjct: 342 LEWQECNDDVDKFYKECILQDIIDKEISEKVMMHWL 377
>gi|74149634|dbj|BAE36440.1| unnamed protein product [Mus musculus]
Length = 393
Score = 317 bits (811), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 159/352 (45%), Positives = 231/352 (65%), Gaps = 16/352 (4%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G +TIE D++ AL +AG + E+ +
Sbjct: 52 IVLLMAYSGKGYHGMQ----------RNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMR 101
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ + + IN HLP IRIL +KRVT GFNSKN
Sbjct: 102 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDILDKINSHLPSHIRILGLKRVTGGFNSKNK 161
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA +D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P
Sbjct: 162 CDARTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPR 221
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+PS RYI+ CE+PFV++GLE +K+KGQSFM+HQIRKMVG+ +AI +G+ + ++E
Sbjct: 222 EPSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLE 281
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V F+ ++I P
Sbjct: 282 RSWGEEKVDVPKAPGLGLVLERVHFEKYNQRFGGDGLHEPLDWTQEEGKVTAFKEQYIYP 341
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEED 346
+V TE E+ M WL L ++F A AA A E ++G+ + D
Sbjct: 342 TIVSTERDERSMAQWLNTLPINNFSGTALGAADTGAKVPSSLEGSEGDGDTD 393
>gi|194043580|ref|XP_001928625.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial isoform 2
[Sus scrofa]
gi|311270525|ref|XP_003132902.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Sus
scrofa]
Length = 400
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 160/352 (45%), Positives = 227/352 (64%), Gaps = 16/352 (4%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 59 IVLLMAYSGKGYHGMQ----------RNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMR 108
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ + E IN HLP IRIL +KRVT GFNSKN
Sbjct: 109 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRILGLKRVTGGFNSKNK 168
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P
Sbjct: 169 CDARTYFYMLPTFAFAHKDHDVQDETYRLSTETLQRVNRLLACYKGTHNFHNFTSQKGPR 228
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+PS RYI+ CE+PFV++G+E +K+KGQSFM HQIRKMVG+ +AI +G+ + ++E
Sbjct: 229 EPSARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLVVAIIKGYAPESVLE 288
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G + D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + EV F+ + I P
Sbjct: 289 RSWGEAKVDVPKAPGLGLVLERVHFEKYNQRFGHDGVHEPLDWAREEAEVMAFKEQHIYP 348
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEED 346
++ TE EK M WL L H+F A +AA + E ++G+ + D
Sbjct: 349 TIISTERHEKSMAQWLSTLPMHNFSATAQEAAGLGSKDPNPLEGSEGDGDSD 400
>gi|291415803|ref|XP_002724139.1| PREDICTED: pseudouridylate synthase 1-like, partial [Oryctolagus
cuniculus]
Length = 391
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 154/326 (47%), Positives = 218/326 (66%), Gaps = 20/326 (6%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G +TIE D++ AL ++G + E+ +
Sbjct: 59 IVLLLAYSGKGYHGMQ----------RNVGSSQFRTIEDDLVSALVRSGCIPENHGEDMR 108
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ + E IN HLP IRIL +KRVT GFNSKN
Sbjct: 109 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRILGLKRVTGGFNSKNK 168
Query: 117 CNARTYSYTCPTYAFA----TPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRK 172
C+ARTY Y PT+AFA PQD + +RL+ + + LL Y+GTH+FHNFTS++
Sbjct: 169 CDARTYFYMLPTFAFAHKDRDPQD--ETYRLSAETLQRVNRLLACYQGTHSFHNFTSQKG 226
Query: 173 PLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDL 232
P +PS RYI+ CE+PFV++GLE +++KGQSFM+HQIRKMVG+ +AI +G+ + +
Sbjct: 227 PREPSARRYILQMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESV 286
Query: 233 IEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFI 292
+E+++G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + EV F+ + I
Sbjct: 287 LERSWGDEKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWAQEEAEVAAFKEQHI 346
Query: 293 LPYLVKTEITEKPMLAWLELLADHSF 318
LP +V TE E+ M WL L H F
Sbjct: 347 LPTIVSTERGERSMAQWLSTLPAHDF 372
>gi|383863471|ref|XP_003707204.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Megachile rotundata]
Length = 399
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 156/335 (46%), Positives = 210/335 (62%), Gaps = 36/335 (10%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
+M Y G YFG+Q N+G KTIE ++ AL +A ++T+D F + I+F
Sbjct: 53 VIMMGYLGGNYFGMQI----------NRGTKTIEESLLTALLEANYITKDQFEDIREIRF 102
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
QRAARTDKGVSA++QIVSLKLP NKE IN+HLP+ IR+ +KRVTKGFNSKN C+ART
Sbjct: 103 QRAARTDKGVSAVRQIVSLKLPHNVNKEDINKHLPKDIRVFGVKRVTKGFNSKNQCDART 162
Query: 122 YSYTCPTYAFA--------------TPQDTK------------DDFRLTPDQFNFLQALL 155
Y Y PT+A A +DT+ + FRL+ N L L
Sbjct: 163 YRYVLPTFALAPEHPDFLQLGDEEEVDEDTRRKQLSTINGEPYNRFRLSTKMLNDLNETL 222
Query: 156 KQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRK 215
K EGTHNFHNFTS+ K LDP RYI+ F C + F+ + +E L++KGQSFMLHQIRK
Sbjct: 223 KLLEGTHNFHNFTSRTKALDPRNRRYIIYFRCIETFIVNDMEFAVLEVKGQSFMLHQIRK 282
Query: 216 MVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESL 275
MV + + I+R D +++ F +++ +P APGLGL L VHY Y+++YG+DG+HE+L
Sbjct: 283 MVTLVIGISRNILKNDFLKEAFSKEKYSIPTAPGLGLSLHFVHYKYYDERYGKDGIHETL 342
Query: 276 HFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWL 310
++E D+EV +F + IL ++ TEITE M WL
Sbjct: 343 DWNECDEEVEKFYREHILKSIIDTEITENVMFNWL 377
>gi|410930966|ref|XP_003978868.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Takifugu rubripes]
Length = 390
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 157/334 (47%), Positives = 224/334 (67%), Gaps = 20/334 (5%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+A++ AYSG GY+G+Q RN G +TIE D++ AL K+G + ++ + +
Sbjct: 46 VALLMAYSGKGYYGMQ----------RNPGSSEFRTIEDDLVAALVKSGCIPQNHGDDMK 95
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPEEAN-KEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLKL + E INEHLP QIRIL +KRVT+GFNSKNN
Sbjct: 96 KMSFQRCARTDKGVSAAGQVVSLKLLLIDDLTEKINEHLPPQIRILGVKRVTQGFNSKNN 155
Query: 117 CNARTYSYTCPTYAFATPQD-----TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKR 171
C+ARTY+Y PT AF +P+D T FRL P+ + L Y+GTHNFHNFTS++
Sbjct: 156 CDARTYAYMLPTVAF-SPKDFDAAGTAPSFRLQPETLQRVNHLFAHYKGTHNFHNFTSQK 214
Query: 172 KPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKD 231
P DPS RYI C +PF++ E + ++GQSFMLHQIRKM+G+ +A+ +G+ ++
Sbjct: 215 APNDPSARRYITHMLCGEPFIRGDTEFAVITVRGQSFMLHQIRKMIGLVIAVIKGYAGEE 274
Query: 232 LIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKF 291
++E+++GL + D+P APGLGL+LE+VH+D YN+++G DG+HE L + E ++ V F+ F
Sbjct: 275 VMERSWGLQKVDVPKAPGLGLVLEKVHFDRYNKRFGGDGLHERLEWEEQEEAVQAFKEAF 334
Query: 292 ILPYLVKTEITEKPMLAWLELLADHSFETRAAKA 325
I P +++TE E M++W+ L H FE A +A
Sbjct: 335 IYPTIMETERQEGSMVSWMNTLPIHDFEASAGEA 368
>gi|387019437|gb|AFJ51836.1| tRNA pseudouridine synthase A, mitochondrial-like [Crotalus
adamanteus]
Length = 404
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 157/347 (45%), Positives = 229/347 (65%), Gaps = 10/347 (2%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ ++ Y G GY G+Q + +TIE D++ AL K+G + E+ + +
Sbjct: 62 VVLLLVYCGKGYHGMQRN-------VKTSQYRTIEDDLVSALIKSGCIPENHGEDMKKMS 114
Query: 61 FQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
FQR ARTDKGVSA QIVSLK+ E + INEHLP IRIL +KRVT FNSKN C+A
Sbjct: 115 FQRCARTDKGVSAAGQIVSLKVWLIEDILQKINEHLPSHIRILGLKRVTGKFNSKNRCDA 174
Query: 120 RTYSYTCPTYAFATPQDTKDD--FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPS 177
RTYSY PT+AFA D D +RL+ + + LL Y+GTHNFHNFTS++ P DPS
Sbjct: 175 RTYSYMLPTFAFAHKDDAPQDETYRLSAETLEAVNHLLACYKGTHNFHNFTSQKGPRDPS 234
Query: 178 CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTF 237
RYIM CE+PFV++G+E +K+KGQSFM+HQIRKM+G+ +AI +G + ++E+++
Sbjct: 235 AKRYIMEMFCEEPFVRNGMEFAVVKVKGQSFMMHQIRKMIGLVIAIVKGHATLSILEQSW 294
Query: 238 GLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLV 297
G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE+L + E ++++ F+ + I P ++
Sbjct: 295 GEERVDIPKAPGLGLILERVHFESYNQRFGDDGLHEALEWAEEEEKIMAFKEQHIYPTII 354
Query: 298 KTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEE 344
TE E+ M+ WLE L +H F++ +K A + + E +DG E+
Sbjct: 355 NTEKEERSMMNWLETLFNHQFDSTISKLQEDARDAKSDPEGSDGCED 401
>gi|432886555|ref|XP_004074895.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Oryzias latipes]
Length = 416
Score = 315 bits (806), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 152/331 (45%), Positives = 219/331 (66%), Gaps = 17/331 (5%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+A++ AYSG GY+G+Q RN G +TIE D++ AL K+G + + + +
Sbjct: 77 VALLLAYSGKGYYGMQ----------RNPGTSQFRTIEDDLVSALVKSGCIPGNHGDEMK 126
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ E E INEHLP QIR+L +KRVT+GFNSKNN
Sbjct: 127 KMSFQRCARTDKGVSAAGQVVSLKVWLIEDVLEKINEHLPPQIRVLGLKRVTQGFNSKNN 186
Query: 117 CNARTYSYTCPTYAFATPQ-DTKD--DFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKP 173
C+ARTYSY PT AF+ D + FRL + + L Y+GTHNFHNFTS++ P
Sbjct: 187 CDARTYSYMLPTVAFSQKDYDVGNIAAFRLQTETLQRVNRLFSLYKGTHNFHNFTSQKAP 246
Query: 174 LDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLI 233
DPS RYI C +PF+++ E + ++GQSFMLHQIRKM+G+ +A+ +G+ + +I
Sbjct: 247 SDPSARRYITEMSCGEPFIRNNCEFAVINVRGQSFMLHQIRKMIGLVIAVIKGYAQEKVI 306
Query: 234 EKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFIL 293
E+++G ++ D+P APGLGL+LE VH+D YN+++G DG+HE L + + + + F+ +I
Sbjct: 307 ERSWGEEKVDVPKAPGLGLVLEMVHFDRYNKRFGGDGLHERLEWDKQTEAIKAFKEAYIY 366
Query: 294 PYLVKTEITEKPMLAWLELLADHSFETRAAK 324
P +V+TEI E M++W+ L H F+ AA+
Sbjct: 367 PTIVETEIQEGSMVSWMSTLPIHDFKATAAE 397
>gi|390356991|ref|XP_003728903.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
isoform 1 [Strongylocentrotus purpuratus]
Length = 512
Score = 314 bits (805), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 155/335 (46%), Positives = 210/335 (62%), Gaps = 12/335 (3%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ +Y+G Y G+Q RN G++TIE D++ AL K+G + ED +
Sbjct: 91 VAILLSYAGANYVGMQ----------RNPGVQTIEEDLVNALVKSGAIPEDCGRNMNKMS 140
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEAN-KEAINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
FQR ARTDKGVSA Q+VSLK+ N E INEHLP IR++ + R T GFN KNNC
Sbjct: 141 FQRCARTDKGVSAAGQVVSLKVLMLDNLMERINEHLPPVIRVMGVTRTTGGFNCKNNCEF 200
Query: 120 RTYSYTCPTYAFATPQD-TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSC 178
RTY Y PT+AF +D T + +R++ ++ + LK+Y GTHNFHNFTS + DPS
Sbjct: 201 RTYMYLIPTFAFTPLEDFTLEKYRVSDEKIEEVGEQLKKYIGTHNFHNFTSGKAFTDPSA 260
Query: 179 SRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFG 238
+RYI F CE+ FV DGLE +K+KGQSFMLHQIRKM+G+ +A+ RG T +E+ F
Sbjct: 261 NRYIKEFTCEKGFVDDGLEFAVIKVKGQSFMLHQIRKMLGLVLAVVRGLTPPSTVERAFQ 320
Query: 239 LDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVK 298
+ D+P APGLGL+LE VHYD YN+++G DG+HE L F +++ F+HK I P ++
Sbjct: 321 EPKLDIPRAPGLGLVLEAVHYDCYNKRWGNDGLHEPLTFEASKEKIEAFKHKHIYPNIIV 380
Query: 299 TEITEKPMLAWLELLADHSFETRAAKAALAAANGE 333
E K ML WL L HS++ + L A E
Sbjct: 381 REKYNKSMLQWLSTLPLHSYDVVGTRNPLRIAATE 415
>gi|251823909|ref|NP_001156523.1| tRNA pseudouridine synthase A [Ovis aries]
gi|238815029|gb|ACR56711.1| pseudouridylate synthase 1 [Ovis aries]
Length = 400
Score = 314 bits (805), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 160/352 (45%), Positives = 222/352 (63%), Gaps = 16/352 (4%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 59 IVLLMAYSGKGYHGMQ----------RNVGSSKFKTIEDDLVSALVRSGCIPENHGEDMR 108
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ + E IN HLP IRIL +KRVT GFNSKN
Sbjct: 109 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRILGLKRVTGGFNSKNK 168
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P
Sbjct: 169 CDARTYFYMLPTFAFAHKDHDLQDETYRLSAETLGRVNRLLACYKGTHNFHNFTSQKGPH 228
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+PS RYI+ CE+PFV++G+E +K+KGQSFM HQIRKMVG+ +AI +G+ + ++E
Sbjct: 229 EPSARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLVVAIIKGYAPEGVLE 288
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+ +G + D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + EV F+ + I P
Sbjct: 289 RCWGEAKVDVPKAPGLGLVLERVHFEKYNQRFGHDGLHEPLDWAREEAEVTAFKEQHIYP 348
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEED 346
++ TE E+ M WL L H F A AA E +DG + D
Sbjct: 349 TIISTERQERSMAQWLSTLPMHDFSATAHAAAGLGTKAPSSLEGSDGVGDSD 400
>gi|390356993|ref|XP_796203.3| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
isoform 2 [Strongylocentrotus purpuratus]
Length = 510
Score = 313 bits (802), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 154/335 (45%), Positives = 210/335 (62%), Gaps = 12/335 (3%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ +Y+G Y G+Q RN G++TIE D++ AL K+G + ED +
Sbjct: 89 VAILLSYAGANYVGMQ----------RNPGVQTIEEDLVNALVKSGAIPEDCGRNMNKMS 138
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEAN-KEAINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
FQR ARTDKGVSA Q+VSLK+ N E INEHLP IR++ + R T GFN KNNC
Sbjct: 139 FQRCARTDKGVSAAGQVVSLKVLMLDNLMERINEHLPPVIRVMGVTRTTGGFNCKNNCEF 198
Query: 120 RTYSYTCPTYAFATPQD-TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSC 178
RTY Y PT+AF +D T + +R++ ++ + LK+Y GTHNFHNFTS + DPS
Sbjct: 199 RTYMYLIPTFAFTPLEDFTLEKYRVSDEKIEEVGEQLKKYIGTHNFHNFTSGKAFTDPSA 258
Query: 179 SRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFG 238
+RYI F CE+ FV DG+E +K+KGQSFMLHQIRKM+G+ +A+ RG T +E+ F
Sbjct: 259 NRYIKEFTCEKGFVDDGMEFAVIKVKGQSFMLHQIRKMLGLVLAVVRGLTPPSTVERAFQ 318
Query: 239 LDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVK 298
+ D+P APGLGL+LE VHYD YN+++G DG+HE L F +++ F+HK I P ++
Sbjct: 319 EPKLDIPRAPGLGLVLEAVHYDCYNKRWGNDGLHEPLTFEASKEKIEAFKHKHIYPNIIV 378
Query: 299 TEITEKPMLAWLELLADHSFETRAAKAALAAANGE 333
E K ML WL L HS++ + L A E
Sbjct: 379 REKYNKSMLQWLSTLPLHSYDVVGTRNPLRIAATE 413
>gi|327283197|ref|XP_003226328.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Anolis carolinensis]
Length = 406
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 157/330 (47%), Positives = 223/330 (67%), Gaps = 10/330 (3%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ ++ AYSG GY G+Q N KTIE D++ AL ++G + E+ + +
Sbjct: 63 IVLLVAYSGKGYHGMQRN-------VGNSQFKTIEDDLVLALIQSGCIPENHGEDMKKMS 115
Query: 61 FQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
FQR ARTDKGVSA QIVSLK+ E + IN HLP IRIL +KRVT GFNSKN C+A
Sbjct: 116 FQRCARTDKGVSAAGQIVSLKVWLIEDILQKINNHLPPHIRILGLKRVTGGFNSKNKCDA 175
Query: 120 RTYSYTCPTYAFATPQ-DTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPS 177
RTYSY PT+AFA D +D F L + + LL Y+GTHNFHNFTS++ P DPS
Sbjct: 176 RTYSYMLPTFAFAHKDCDFQDHTFHLNTETLATVNRLLAGYKGTHNFHNFTSQKGPKDPS 235
Query: 178 CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTF 237
RYIM CE+PFV+ G+E +K+KGQSFM+HQIRKM+G+ +AI +G+ S+ ++E+++
Sbjct: 236 AKRYIMEMYCEEPFVRQGMEFAVMKVKGQSFMMHQIRKMIGLVIAIVKGYASESIMEQSW 295
Query: 238 GLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLV 297
G ++ D+P APGLGL+LE+VH++ YN+++G DG HE+L + E +++++ F+ K+I P ++
Sbjct: 296 GEEKVDVPKAPGLGLVLERVHFEKYNKRFGNDGFHEALEWAEEEEKISAFKEKYIYPTII 355
Query: 298 KTEITEKPMLAWLELLADHSFETRAAKAAL 327
TE E+ M WLE L+ H F + A++ L
Sbjct: 356 STEKEERSMANWLETLSYHDFNSTASRTQL 385
>gi|334326921|ref|XP_001378494.2| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Monodelphis domestica]
Length = 516
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 157/335 (46%), Positives = 224/335 (66%), Gaps = 18/335 (5%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 102 IVLLMAYSGKGYHGMQ----------RNLGSSQFKTIEDDLVFALVQSGCIPENHGEDMR 151
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPEEANK-EAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA QIVSLK+ N E IN HLP IRIL +KRVT FNSKN
Sbjct: 152 KMAFQRCARTDKGVSAAGQIVSLKVWLIDNILEKINSHLPSHIRILGLKRVTGSFNSKNR 211
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA D +D+ +RL+ + + LL Y+GTH+FHNFTS++ P
Sbjct: 212 CDARTYFYMLPTFAFAHKDHDVQDETYRLSSETLEKVNQLLASYKGTHSFHNFTSQKGPK 271
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+PS RYIM CE PFV++G+E +K+KGQSFM+HQIRKMVG+ +AI +G+ + ++E
Sbjct: 272 EPSARRYIMEMHCEAPFVREGMEFAVIKVKGQSFMMHQIRKMVGLVIAIMKGYVPESVME 331
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G ++ D+P APGLGL+LE+VH++ YN+++G DG+HE L + E ++++ F+ ++I P
Sbjct: 332 RSWGEEKVDIPKAPGLGLVLERVHFEQYNRRFGNDGLHEPLDWVEEEEKMTVFKEQYIYP 391
Query: 295 YLVKTEITEKPMLAWLELLADHSFE--TRAAKAAL 327
+ KTE+ E M WL L +H F+ T AKA +
Sbjct: 392 TITKTEMEEHSMTNWLNTLPNHDFDAGTLEAKADI 426
>gi|50756277|ref|XP_415090.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Gallus
gallus]
Length = 409
Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 154/330 (46%), Positives = 226/330 (68%), Gaps = 16/330 (4%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 66 IVLLMAYSGKGYHGMQ----------RNLGSSQFKTIEDDLVSALVRSGCIPENHGEDMK 115
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA QIVSLK+ + E IN HLP IRIL +KRVT GFNSKN
Sbjct: 116 KMSFQRCARTDKGVSAAGQIVSLKVRLIDDILEKINNHLPSHIRILGLKRVTGGFNSKNK 175
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY+Y PT+AFA D +++ RL+ + + +LL +Y+GTHNFHNFTS++ P
Sbjct: 176 CDARTYAYMLPTFAFAHKDHDVQEEAHRLSRETLEKVNSLLARYKGTHNFHNFTSQKGPK 235
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
DPS RYIM C +PFV++G+E +K+KGQSFM+HQIRKM+G+ +AI +G+ + +IE
Sbjct: 236 DPSARRYIMEMYCGEPFVREGIEFAVIKVKGQSFMMHQIRKMIGLVIAIVKGYAPESIIE 295
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G ++ D+P APGLGL+LE+VH++ YN+++G DG+HE L + E ++++ F+ ++I P
Sbjct: 296 RSWGEEKVDVPKAPGLGLVLERVHFEKYNRRFGNDGLHEPLEWKEEEEKIAVFKEQYIYP 355
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAK 324
++ TE EK M++WL L+ H F + A+
Sbjct: 356 TIINTEREEKSMMSWLNTLSIHDFNSSTAE 385
>gi|410976436|ref|XP_003994626.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Felis
catus]
Length = 673
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 156/332 (46%), Positives = 217/332 (65%), Gaps = 16/332 (4%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ YSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 61 IVLLMGYSGKGYHGMQ----------RNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMR 110
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ + E IN HLP IRIL +KRVT GFNSKN
Sbjct: 111 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDILEKINGHLPPHIRILGLKRVTGGFNSKNK 170
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA D +D+ +RL+ D + ALL Y+GTHNFHNFTS++ P
Sbjct: 171 CDARTYLYMLPTFAFAHKDHDVQDESYRLSADTLRRVNALLACYKGTHNFHNFTSQKGPR 230
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+ S RYI+ CE+PFV++G+E +K+KGQSFM HQIRKMVG+ +A+ +G+ + L+E
Sbjct: 231 EASARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLVVAVIKGYAPESLLE 290
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G + D+P APGLGL+LE+VH+D YNQ++G DG+HE L + + + V F+ + I P
Sbjct: 291 RSWGEAKVDVPKAPGLGLVLERVHFDKYNQRFGNDGLHEPLDWTQEEAGVAAFKEQHIYP 350
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAA 326
++ TE E+ M WL L H F+ A AA
Sbjct: 351 TIISTERQERSMARWLGTLPVHDFDATAHAAA 382
>gi|213513998|ref|NP_001134221.1| tRNA pseudouridine synthase A [Salmo salar]
gi|209731596|gb|ACI66667.1| tRNA pseudouridine synthase A [Salmo salar]
Length = 392
Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 152/333 (45%), Positives = 221/333 (66%), Gaps = 19/333 (5%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY+G+Q RN G KTIE +++ AL K+G + ++ + +
Sbjct: 52 VVLLLAYSGKGYYGMQ----------RNAGSSQFKTIEDELVTALIKSGCIPDNHGDDMK 101
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLKL E E IN +LP QIR+L +KRVT GFNSKN+
Sbjct: 102 KMSFQRCARTDKGVSAAGQVVSLKLWMIEDVMEKINSNLPPQIRVLGLKRVTGGFNSKNS 161
Query: 117 CNARTYSYTCPTYAFATPQD--TKD--DFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRK 172
C+ARTYSY PT AF +P+D TK+ FRL P+ + L Y+GTHNFHNFTS++
Sbjct: 162 CDARTYSYMLPTVAF-SPKDYYTKNYAAFRLEPETLQRVNQLFGSYKGTHNFHNFTSQKA 220
Query: 173 PLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDL 232
DPS RYI C +PFV+ G E + ++GQSFM+HQIRKM+G+ +A+ +G++ ++
Sbjct: 221 AWDPSARRYITEMSCGEPFVRGGAEFAEITVRGQSFMMHQIRKMIGLVIAVVKGYSGDEV 280
Query: 233 IEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFI 292
+++++G ++ D+P APGLGL+LE+VH+D YN+++G DG+HE L + E ++ + F+ + I
Sbjct: 281 LKRSWGEEKVDVPKAPGLGLVLEKVHFDRYNKRFGGDGLHECLEWTEEEQAILAFKEEHI 340
Query: 293 LPYLVKTEITEKPMLAWLELLADHSFETRAAKA 325
P +V+TE E M +W+ L H FE A A
Sbjct: 341 YPSIVETECQEGSMASWMATLPIHDFEATATGA 373
>gi|348513719|ref|XP_003444389.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Oreochromis niloticus]
Length = 421
Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 146/327 (44%), Positives = 216/327 (66%), Gaps = 19/327 (5%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ YSG GY+G+Q RN G +TIE D++ AL K+G + E+ + +
Sbjct: 82 VVLLMVYSGKGYYGMQ----------RNPGNSQFRTIEDDLVAALIKSGCIPENHGDEMK 131
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ + E INEHLP QI++L +KRVT+GFNSKNN
Sbjct: 132 KMSFQRCARTDKGVSAAGQVVSLKVRLIDDIIEKINEHLPPQIKVLGLKRVTQGFNSKNN 191
Query: 117 CNARTYSYTCPTYAFATPQDTKDD----FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRK 172
C+ARTYSY PT AF +P+D FRL P+ + L Y+GTHNFHNFTS++
Sbjct: 192 CDARTYSYMLPTVAF-SPKDYDTGNIAAFRLEPETLQKVNRLFALYKGTHNFHNFTSQKA 250
Query: 173 PLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDL 232
P DPS RYI C +PF++ E + ++GQSFMLHQIRKM+G+ +A+ +G+ +++
Sbjct: 251 PSDPSARRYITEMSCGEPFIRRNYEFAVITVRGQSFMLHQIRKMIGLVIAVVKGYAKEEV 310
Query: 233 IEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFI 292
+E+++G ++ D+P APGLGL+LE+VH+D YN+++G DG+HE L + ++ + F+ I
Sbjct: 311 MERSWGQEKVDVPKAPGLGLILERVHFDRYNKRFGGDGLHEKLEWDREEEAIKAFKEAHI 370
Query: 293 LPYLVKTEITEKPMLAWLELLADHSFE 319
P +++TE E M++W+ L H F+
Sbjct: 371 YPTIIETECEEGSMVSWMATLPIHDFD 397
>gi|281340805|gb|EFB16389.1| hypothetical protein PANDA_012338 [Ailuropoda melanoleuca]
Length = 359
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 154/336 (45%), Positives = 217/336 (64%), Gaps = 16/336 (4%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 30 IVLLMAYSGKGYHGMQ----------RNVGSSQFKTIEDDLVSALVQSGCIPENHGEDMR 79
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ + E IN HLP IRIL +KRVT GFNSKN
Sbjct: 80 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPPHIRILGLKRVTGGFNSKNK 139
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA D +D+ +RL+ + + LL Y GTHNFHNFTS++ P
Sbjct: 140 CDARTYFYMLPTFAFAHKDHDVQDERYRLSAETLRRVNGLLACYRGTHNFHNFTSQKGPH 199
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+ S RYI+ CE+PFV++G+E +K+KGQSFM HQIRKMVG+ +A+ +G+ + ++E
Sbjct: 200 EASARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLVVAVVKGYAPESVLE 259
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G + D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + V F+ + I P
Sbjct: 260 RSWGEAKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWTQEEAGVTAFKEQHIYP 319
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAALAAA 330
++ TE+ E+ M WL L H F A AA A
Sbjct: 320 TIISTELHERSMAQWLSTLPVHDFNATAHAAASPGA 355
>gi|348550791|ref|XP_003461214.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Cavia
porcellus]
Length = 425
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 150/324 (46%), Positives = 216/324 (66%), Gaps = 16/324 (4%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL +AG + E+ +
Sbjct: 82 IVLLMAYSGKGYHGMQ----------RNLGSSQFKTIEDDLVSALVRAGCIPENHGEDMR 131
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ + + IN HLP IR+L +KRVT GFNSKN
Sbjct: 132 KMSFQRCARTDKGVSAAGQVVSLKVWLIDGLLDKINSHLPSHIRVLGLKRVTGGFNSKNR 191
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA +D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P
Sbjct: 192 CDARTYFYMLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPR 251
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+PS RY++ CE PF ++GLE +K+KGQSFM+HQIRKMVG+ +AI +G+ + ++E
Sbjct: 252 EPSARRYVLEMYCEPPFEREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLE 311
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V F+ + I P
Sbjct: 312 RSWGEEKVDVPKAPGLGLVLERVHFETYNQRFGGDGLHEPLDWAQEEAQVAAFKEQHIYP 371
Query: 295 YLVKTEITEKPMLAWLELLADHSF 318
++ TE E+ M WL L H F
Sbjct: 372 TIISTERHERSMAQWLSTLPVHDF 395
>gi|443709138|gb|ELU03937.1| hypothetical protein CAPTEDRAFT_83969, partial [Capitella teleta]
Length = 303
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 160/319 (50%), Positives = 206/319 (64%), Gaps = 24/319 (7%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQ-NI 59
+AM YSG GYFG+Q RN G TIE D+++AL KAG VT+D +P +
Sbjct: 8 VAMFMCYSGKGYFGMQ----------RNPGYATIERDLIDALAKAGVVTQDQAESPGPKM 57
Query: 60 QFQRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
QFQRAARTDKGVSA Q+ SLK+ + INEHLPEQIRIL I VTKGF+SKN+CN
Sbjct: 58 QFQRAARTDKGVSAAGQVCSLKI----SVFKINEHLPEQIRILGIIPVTKGFDSKNSCNG 113
Query: 120 RTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCS 179
RTY+Y PTYAF TP + Q N + L + GTHNFHN+TS +KP DPS
Sbjct: 114 RTYTYMVPTYAF-TPVEMA-----IQRQVNII---LSSFVGTHNFHNYTSGKKPTDPSAH 164
Query: 180 RYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGL 239
RYI+SF F+ DG+E + I+GQSFMLHQIRKM+GV +AI RG++SK ++ +G
Sbjct: 165 RYIISFKMGDAFIVDGIEFAVITIRGQSFMLHQIRKMIGVTIAIMRGYSSKSVLIDAWGQ 224
Query: 240 DQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKT 299
D+ D+P APGLGL+L++VHYD YN+ YG DG+H L + V +F+ K I +V+
Sbjct: 225 DKCDIPRAPGLGLMLDKVHYDDYNKYYGNDGIHTKLDWEVYKDTVEDFKKKHIYSTVVEG 284
Query: 300 EITEKPMLAWLELLADHSF 318
E +K M+ W+ L H F
Sbjct: 285 EKNDKSMMTWISTLLLHKF 303
>gi|148688057|gb|EDL20004.1| pseudouridine synthase 1, isoform CRA_b [Mus musculus]
Length = 452
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 160/370 (43%), Positives = 231/370 (62%), Gaps = 34/370 (9%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G +TIE D++ AL +AG + E+ +
Sbjct: 93 IVLLMAYSGKGYHGMQ----------RNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMR 142
Query: 58 NIQFQRAARTDK------------------GVSALKQIVSLKLPE-EANKEAINEHLPEQ 98
+ FQR ARTDK GVSA Q+VSLK+ + + IN HLP
Sbjct: 143 KMSFQRCARTDKPLRTSACFCLYTGFLFHWGVSAAGQVVSLKVWLIDDILDKINSHLPSH 202
Query: 99 IRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLK 156
IRIL +KRVT GFNSKN C+ARTY Y PT+AFA +D +D+ +RL+ + + LL
Sbjct: 203 IRILGLKRVTGGFNSKNKCDARTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLA 262
Query: 157 QYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKM 216
Y+GTHNFHNFTS++ P +PS RYI+ CE+PFV++GLE +K+KGQSFM+HQIRKM
Sbjct: 263 CYKGTHNFHNFTSQKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKM 322
Query: 217 VGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLH 276
VG+ +AI +G+ + ++E+++G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L
Sbjct: 323 VGLVVAIVKGYAPESVLERSWGEEKVDVPKAPGLGLVLERVHFEKYNQRFGGDGLHEPLD 382
Query: 277 FHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQ 336
+ + + +V F+ ++I P +V TE E+ M WL L H+F A AA A
Sbjct: 383 WTQEEGKVTAFKEQYIYPTIVSTERDERSMAQWLNTLPIHNFSGTALGAADTGAKVPSSL 442
Query: 337 EVTDGEEEED 346
E ++G+ + D
Sbjct: 443 EGSEGDGDTD 452
>gi|301775629|ref|XP_002923235.1| PREDICTED: tRNA pseudouridine synthase A-like [Ailuropoda
melanoleuca]
Length = 426
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 154/336 (45%), Positives = 217/336 (64%), Gaps = 16/336 (4%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 91 IVLLMAYSGKGYHGMQ----------RNVGSSQFKTIEDDLVSALVQSGCIPENHGEDMR 140
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ + E IN HLP IRIL +KRVT GFNSKN
Sbjct: 141 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPPHIRILGLKRVTGGFNSKNK 200
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA D +D+ +RL+ + + LL Y GTHNFHNFTS++ P
Sbjct: 201 CDARTYFYMLPTFAFAHKDHDVQDERYRLSAETLRRVNGLLACYRGTHNFHNFTSQKGPH 260
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+ S RYI+ CE+PFV++G+E +K+KGQSFM HQIRKMVG+ +A+ +G+ + ++E
Sbjct: 261 EASARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLVVAVVKGYAPESVLE 320
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G + D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + V F+ + I P
Sbjct: 321 RSWGEAKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWTQEEAGVTAFKEQHIYP 380
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAALAAA 330
++ TE+ E+ M WL L H F A AA A
Sbjct: 381 TIISTELHERSMAQWLSTLPVHDFNATAHAAASPGA 416
>gi|11464733|gb|AAG35307.1| pseudouridine synthase 1 [Mus musculus]
Length = 411
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 160/370 (43%), Positives = 231/370 (62%), Gaps = 34/370 (9%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G +TIE D++ AL +AG + E+ +
Sbjct: 52 IVLLMAYSGKGYHGMQ----------RNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMR 101
Query: 58 NIQFQRAARTDK------------------GVSALKQIVSLKLPE-EANKEAINEHLPEQ 98
+ FQR ARTDK GVSA Q+VSLK+ + + IN HLP
Sbjct: 102 KMSFQRCARTDKPLRTSACFCLYTGFLFHWGVSAAGQVVSLKVWLIDDILDKINSHLPSH 161
Query: 99 IRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLK 156
IRIL +KRVT GFNSKN C+ARTY Y PT+AFA +D +D+ +RL+ + + LL
Sbjct: 162 IRILGLKRVTGGFNSKNKCDARTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLA 221
Query: 157 QYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKM 216
Y+GTHNFHNFTS++ P +PS RYI+ CE+PFV++GLE +K+KGQSFM+HQIRKM
Sbjct: 222 CYKGTHNFHNFTSQKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKM 281
Query: 217 VGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLH 276
VG+ +AI +G+ + ++E+++G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L
Sbjct: 282 VGLVVAIVKGYAPESVLERSWGEEKVDVPKAPGLGLVLERVHFEKYNQRFGGDGLHEPLD 341
Query: 277 FHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQ 336
+ + + +V F+ ++I P +V TE E+ M WL L H+F A AA A
Sbjct: 342 WTQEEGKVTAFKEQYIYPTIVSTERDERSMAQWLNTLPIHNFSGTALGAADTGAKVPSSL 401
Query: 337 EVTDGEEEED 346
E ++G+ + D
Sbjct: 402 EGSEGDGDTD 411
>gi|70906468|ref|NP_001020732.1| tRNA pseudouridine synthase A, mitochondrial isoform 1 [Mus
musculus]
Length = 441
Score = 307 bits (787), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 160/370 (43%), Positives = 231/370 (62%), Gaps = 34/370 (9%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G +TIE D++ AL +AG + E+ +
Sbjct: 82 IVLLMAYSGKGYHGMQ----------RNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMR 131
Query: 58 NIQFQRAARTDK------------------GVSALKQIVSLKLPE-EANKEAINEHLPEQ 98
+ FQR ARTDK GVSA Q+VSLK+ + + IN HLP
Sbjct: 132 KMSFQRCARTDKPLRTSACFCLYTGFLFHWGVSAAGQVVSLKVWLIDDILDKINSHLPSH 191
Query: 99 IRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLK 156
IRIL +KRVT GFNSKN C+ARTY Y PT+AFA +D +D+ +RL+ + + LL
Sbjct: 192 IRILGLKRVTGGFNSKNKCDARTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLA 251
Query: 157 QYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKM 216
Y+GTHNFHNFTS++ P +PS RYI+ CE+PFV++GLE +K+KGQSFM+HQIRKM
Sbjct: 252 CYKGTHNFHNFTSQKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKM 311
Query: 217 VGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLH 276
VG+ +AI +G+ + ++E+++G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L
Sbjct: 312 VGLVVAIVKGYAPESVLERSWGEEKVDVPKAPGLGLVLERVHFEKYNQRFGGDGLHEPLD 371
Query: 277 FHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQ 336
+ + + +V F+ ++I P +V TE E+ M WL L H+F A AA A
Sbjct: 372 WTQEEGKVTAFKEQYIYPTIVSTERDERSMAQWLNTLPIHNFSGTALGAADTGAKVPSSL 431
Query: 337 EVTDGEEEED 346
E ++G+ + D
Sbjct: 432 EGSEGDGDTD 441
>gi|355714583|gb|AES05050.1| pseudouridylate synthase 1 [Mustela putorius furo]
Length = 353
Score = 307 bits (786), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 155/336 (46%), Positives = 216/336 (64%), Gaps = 16/336 (4%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 27 IVLLMAYSGKGYHGMQ----------RNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMR 76
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ + E IN HLP IRIL +KRVT GFNSKN
Sbjct: 77 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPPHIRILGLKRVTGGFNSKNK 136
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P
Sbjct: 137 CDARTYFYMLPTFAFAHKDHDVQDESYRLSTETLLRVNRLLACYKGTHNFHNFTSQKGPR 196
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+ S RY++ CE+PFV+DG+E +K+KGQSFM HQIRKMVG+ +AI +G+ + ++E
Sbjct: 197 EASARRYVLDMFCEEPFVRDGMEFAVIKVKGQSFMTHQIRKMVGLVVAIVKGYAPESVLE 256
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G + D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + V F+ + I P
Sbjct: 257 RSWGEAKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWSREEAGVTAFKEQHIYP 316
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAALAAA 330
++ TE E+ M WL L H F A AA A
Sbjct: 317 TIISTERHERSMAQWLSTLPVHDFNATAHAAACPDA 352
>gi|73994983|ref|XP_852307.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Canis
lupus familiaris]
Length = 409
Score = 307 bits (786), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 158/349 (45%), Positives = 222/349 (63%), Gaps = 19/349 (5%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 63 IVLLMAYSGKGYHGMQ----------RNVGSSQFKTIEDDLVSALVQSGCIPENHGEDMR 112
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ + E IN HLP IRIL +KRVT GFNSKN
Sbjct: 113 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPPHIRILGLKRVTGGFNSKNK 172
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P
Sbjct: 173 CDARTYFYMLPTFAFAHKDHDVQDESYRLSAETLQRVNGLLACYKGTHNFHNFTSQKGPQ 232
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+ S RYI+ CE+PFV++G+E +K+KGQSFM HQIRKMVG+ +AI +G+ + ++E
Sbjct: 233 EASARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLLVAIVKGYAPESVLE 292
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G + D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + V F+ + I P
Sbjct: 293 RSWGDAKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWTREEAGVTAFKEQHIYP 352
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEE 343
++ TE E+ M WL L H F A A +A G ++ V G E
Sbjct: 353 TIISTERHERSMAQWLSTLPVHDFN---ATAHMAVGAGTKVGAVAMGLE 398
>gi|449476909|ref|XP_002194956.2| PREDICTED: tRNA pseudouridine synthase A, mitochondrial
[Taeniopygia guttata]
Length = 401
Score = 307 bits (786), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 156/355 (43%), Positives = 231/355 (65%), Gaps = 16/355 (4%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 57 IVLLMAYSGKGYHGMQ----------RNVGSSQFKTIEDDLVSALVQSGCIPENHGEDMK 106
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA QIVSLK+ + E IN HLP IRIL +KRVT GFNSKN
Sbjct: 107 KMSFQRCARTDKGVSAAGQIVSLKVRLIDDILEKINNHLPSHIRILGLKRVTGGFNSKNK 166
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTYSY PT+AFA D +++ FRL D + LL Y+GTHNFHNFTS++ P
Sbjct: 167 CDARTYSYMLPTFAFAHKDHDVQEELFRLDRDTLERVNRLLACYKGTHNFHNFTSQKGPR 226
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
DPS RYIM C +PFV++ +E ++++GQSFM+HQIRKM+G+ +AI +G+ ++ ++E
Sbjct: 227 DPSAKRYIMEMYCGEPFVRENVEFAVIQVRGQSFMMHQIRKMIGLVIAIVKGYAAESIME 286
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G ++ D+P APGLGL+LE+VH++ YN+++G DG+HE L + E ++++ F+ ++I P
Sbjct: 287 RSWGEEKVDVPKAPGLGLVLEKVHFEKYNRRFGNDGLHEPLEWTEEEEKIALFKEQYIYP 346
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEEDEED 349
++ TE EK M WL+ L H F + A + N ++ ++ + D+ D
Sbjct: 347 TIINTEREEKSMANWLKTLPIHDFNSSAVEMQTNNRNSKKSSDLEGSDGCGDDSD 401
>gi|391340105|ref|XP_003744386.1| PREDICTED: LOW QUALITY PROTEIN: tRNA pseudouridine synthase A,
mitochondrial-like [Metaseiulus occidentalis]
Length = 417
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 157/325 (48%), Positives = 204/325 (62%), Gaps = 18/325 (5%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
AM Y G GY GLQ +N G KTIEGD++EA KAG +T +S PQ I F
Sbjct: 81 AMCLTYCGKGYLGLQ----------KNPGFKTIEGDLLEACVKAGVITPESAEYPQGISF 130
Query: 62 QRAARTDKGVSALKQIVSLKLPE-----EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
QRAARTDKGVSA +QI+SLKLP E INEHL +QIR++ +KRVTK FNSKNN
Sbjct: 131 QRAARTDKGVSAARQILSLKLPTTKEPPEEMVRKINEHLVDQIRVIGLKRVTKNFNSKNN 190
Query: 117 CNARTYSYTCPTYAFATPQD--TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
+ARTY Y CPT+AF TP D + +RL ++ + LLK Y G HNFHNFTS +
Sbjct: 191 ADARTYLYICPTFAF-TPHDQVVNESYRLPSERVEEINRLLKMYIGCHNFHNFTSGKLYT 249
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+ S R + DC PF+ LE + ++KGQSFMLHQIRKMVG + I RG+T++ I
Sbjct: 250 EASAKRVLFEVDCSSPFMVGKLEYVQFRLKGQSFMLHQIRKMVGTIIGIMRGYTTEAFIT 309
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+ FG ++ D+P AP LGL+L+ VHY Y+ +YG DG HE++ + E V+ F+ K ILP
Sbjct: 310 RAFGPEKLDVPKAPPLGLMLDTVHYTRYDDRYGGDGSHETITWEEYQDVVHNFKVKHILP 369
Query: 295 YLVKTEITEKPMLAWLELLADHSFE 319
+ TE + M+ WL L +F+
Sbjct: 370 NIWDTEENGESMIGWLADLDICTFD 394
>gi|56693277|ref|NP_001008603.1| tRNA pseudouridine synthase A [Danio rerio]
gi|56269412|gb|AAH86827.1| Pseudouridine synthase 1 [Danio rerio]
Length = 376
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 147/326 (45%), Positives = 213/326 (65%), Gaps = 10/326 (3%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ AYSG GY+G+Q RN KTIE +++ AL A + E + +
Sbjct: 42 VALLMAYSGKGYYGMQRN-------ARNSQFKTIEDELVTALVGARCIPEGHAEEMKKMS 94
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK-EAINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
FQR+ARTDKGVSA+ ++VSLK+ N E IN HLP +IR+L KRVT GFNSKNNC A
Sbjct: 95 FQRSARTDKGVSAVGRVVSLKVWMIENILEKINAHLPPRIRVLGCKRVTGGFNSKNNCYA 154
Query: 120 RTYSYTCPTYAFATPQDTKDD--FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPS 177
RTYSY PT AF+ ++D FRLT D + L Y+GTHNFHNFTS++ DPS
Sbjct: 155 RTYSYMLPTVAFSPKDYNQEDTSFRLTSDTLQTVNRLFCLYKGTHNFHNFTSQKGHRDPS 214
Query: 178 CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTF 237
RYI C +PF++ +E + ++GQSFM+HQIRKM+G+ +A+ +G+ + ++EK++
Sbjct: 215 AMRYITHMSCGEPFIRKDVEFAVITVRGQSFMMHQIRKMIGLVIAVVKGYVDEGVMEKSW 274
Query: 238 GLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLV 297
G ++ + APGLGL+LE+VH+D YN+++G DG+HE+L + E ++ + +F+ K I P +V
Sbjct: 275 GEEKVGVSKAPGLGLVLERVHFDGYNKRFGGDGIHETLEWTEQEEAIADFKEKHIYPTIV 334
Query: 298 KTEITEKPMLAWLELLADHSFETRAA 323
TE+ E+ M+ W+ L H FE A
Sbjct: 335 DTELNERSMVNWMTSLCIHDFEETAT 360
>gi|351698591|gb|EHB01510.1| tRNA pseudouridine synthase A [Heterocephalus glaber]
Length = 420
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 155/349 (44%), Positives = 222/349 (63%), Gaps = 20/349 (5%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL +AG + E +
Sbjct: 82 IVLLMAYSGKGYHGMQ----------RNSGSSKFKTIEDDLVSALVRAGCIPESHGEDMR 131
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ E + IN HLP IRIL ++RVT GFNSKN
Sbjct: 132 KMSFQRCARTDKGVSAAGQVVSLKVWLIEDLLDKINSHLPSHIRILGLRRVTGGFNSKNK 191
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA +D +D+ +RL+ + + LL ++GTHNFHNFTS++ P
Sbjct: 192 CDARTYFYMLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACHKGTHNFHNFTSQKGPH 251
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+PS RY++ CE PF ++GLE +K+KGQSFM+HQIRKMVG+ +AI +G+ + ++
Sbjct: 252 EPSARRYVLEMYCEPPFEREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLA 311
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
++G + D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V F+ + I P
Sbjct: 312 CSWGEAKVDVPKAPGLGLVLERVHFETYNQRFGGDGLHEPLDWVQEEAKVVAFKEQHIYP 371
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEE 343
+V TE E+ M WL L H+F T +L +G + DG +
Sbjct: 372 SIVSTERHERSMAQWLSTLHIHNFST----TSLTTGSGSQAPSPVDGSD 416
>gi|260817697|ref|XP_002603722.1| hypothetical protein BRAFLDRAFT_93048 [Branchiostoma floridae]
gi|229289044|gb|EEN59733.1| hypothetical protein BRAFLDRAFT_93048 [Branchiostoma floridae]
Length = 352
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 149/302 (49%), Positives = 204/302 (67%), Gaps = 12/302 (3%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A + AYSGVGY G+Q RNQG KTIE D++ A +KAG + +D + Q +
Sbjct: 44 VACLLAYSGVGYMGMQ----------RNQGFKTIEEDLLAAFYKAGAIPKDHMDCMQKMH 93
Query: 61 FQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
FQR ARTDKGVSA QIVSLK+ E + IN+ L E IR++ IKR T GF+SKN C+A
Sbjct: 94 FQRCARTDKGVSAAGQIVSLKMYMIEDAVQKINDCLAESIRLIGIKRTTNGFDSKNACDA 153
Query: 120 RTYSYTCPTYAFA-TPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSC 178
RTY Y PTY+FA T ++T+ DFR T D + +L Y+GTHNFHNFTS +K DPS
Sbjct: 154 RTYMYVLPTYSFAPTKEETEQDFRATDDVMEKVNDVLSAYKGTHNFHNFTSGKKFKDPSA 213
Query: 179 SRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFG 238
RYI+ C FV+D +E + IKGQSFM+HQIRKM+G+ +AI RG + ++E+ +
Sbjct: 214 KRYIIESKCLDTFVRDDIEWTVISIKGQSFMIHQIRKMIGMMLAIVRGLAPRSMLERAWQ 273
Query: 239 LDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVK 298
+ D+P APGLGL+L++VH+D YN+KYG DG+HE+L + E + V +F+ ++I P ++K
Sbjct: 274 EGKCDIPKAPGLGLVLDKVHFDHYNRKYGGDGLHEALEWDEHQETVEKFKEQYIYPTIIK 333
Query: 299 TE 300
E
Sbjct: 334 AE 335
>gi|242003078|ref|XP_002422603.1| tRNA pseudouridine synthase A, putative [Pediculus humanus
corporis]
gi|212505404|gb|EEB09865.1| tRNA pseudouridine synthase A, putative [Pediculus humanus
corporis]
Length = 410
Score = 304 bits (778), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 165/343 (48%), Positives = 216/343 (62%), Gaps = 20/343 (5%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ AY+G Y G+Q +N KTIE +++ AL KA + ++ + I
Sbjct: 76 VALLMAYNGSNYHGMQ----------KNLDFKTIEYELLNALVKANLIPSEAIDNLPLIH 125
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNAR 120
FQRAARTDKGVSA KQ+VS K+ E E IN LPE IR+ SIKRVTKGFN KN C AR
Sbjct: 126 FQRAARTDKGVSAAKQVVSFKIAENFQVEKINMFLPEDIRVFSIKRVTKGFNCKNQCTAR 185
Query: 121 TYSYTCPTYAFAT------PQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
TYSYT PT+A A P++ + D +LT + N +L QY GTH FHNFTSK+
Sbjct: 186 TYSYTLPTFALAPEFHDEYPKNYRID-KLTIQKTN---EILSQYLGTHPFHNFTSKKDGR 241
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
DPS RYIMSF+ E+PF+++ E ITLK+KGQSFMLHQIRKMVG +A+ +GF S+ +
Sbjct: 242 DPSAKRYIMSFEAEEPFLENEEEFITLKVKGQSFMLHQIRKMVGYTIAVMKGFASEAIQS 301
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
K + ++ LPMAPGLGL+LE VHYD YN+K+G DGMH L + EV E+ EFR K I
Sbjct: 302 KIWTNEKVSLPMAPGLGLVLEDVHYDKYNKKFGSDGMHHPLTWEEVCNELKEFRRKKIFS 361
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQE 337
++ E+ + M WL+ + H FE + + E L E
Sbjct: 362 NIISVEMESQQMFNWLQFMPKHKFELTEDELEMNNKKEESLDE 404
>gi|149756822|ref|XP_001493954.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Equus
caballus]
Length = 351
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 149/306 (48%), Positives = 206/306 (67%), Gaps = 6/306 (1%)
Query: 27 RNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLP 83
RN G KTIE D++ AL ++G + E+ + + FQR ARTDKGVSA Q+VSLK+
Sbjct: 30 RNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLKVW 89
Query: 84 E-EANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFA-TPQDTKDD- 140
+ E IN HLP IRIL +KRVT GFNSKN C+ARTY Y PT+AFA +D +D+
Sbjct: 90 LIDDILEKINSHLPSHIRILGLKRVTGGFNSKNKCDARTYFYMLPTFAFAHKDRDVQDET 149
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELIT 200
+RLT + + LL Y+GTHNFHNFTS++ P +PS RYI+ CE+PFV++G+E
Sbjct: 150 YRLTAETLQSVNRLLACYKGTHNFHNFTSQKGPREPSAQRYILDMYCEEPFVREGMEFAV 209
Query: 201 LKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYD 260
+K+KGQSFM HQIRKMVG+ +AI +G+ + ++ +++G + D+P APGLGL+LE+VH++
Sbjct: 210 IKVKGQSFMTHQIRKMVGLVVAIVKGYAPESVLARSWGEAKVDVPKAPGLGLVLERVHFE 269
Query: 261 LYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSFET 320
YNQ++G DG+HE L + + + EV F+ + I P +V TE E+ M WL L H F
Sbjct: 270 KYNQRFGNDGLHEPLDWAQEEAEVAAFKEQHIYPAIVSTERHERSMAQWLSTLPVHDFSA 329
Query: 321 RAAKAA 326
A AA
Sbjct: 330 TAHAAA 335
>gi|444726440|gb|ELW66974.1| tRNA pseudouridine synthase A, mitochondrial [Tupaia chinensis]
Length = 452
Score = 300 bits (769), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 148/329 (44%), Positives = 215/329 (65%), Gaps = 10/329 (3%)
Query: 27 RNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLP 83
RN G +TIE D++ AL ++G + E+ + + FQR ARTDKGVSA Q+VSLK+
Sbjct: 128 RNVGSSQFRTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLKVW 187
Query: 84 E-EANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFA-TPQDTKDD- 140
+ E IN HLP IRIL +KRVT GFNSKN C+ARTY Y PT+AFA +D +D+
Sbjct: 188 LIDDILEKINSHLPSHIRILGLKRVTGGFNSKNRCDARTYLYMLPTFAFAHKDRDVQDES 247
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELIT 200
+RL+P+ + LL Y+GTHNFHNFTS++ P +PS R+++ CE+PF ++GLE
Sbjct: 248 YRLSPEALQQVNRLLACYQGTHNFHNFTSQKGPREPSARRFVLEMYCEEPFEREGLEFAV 307
Query: 201 LKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYD 260
+K+KGQSFM HQIRKMVG+ +AI +G+ + ++E+++G + +P APGLGL+LE+VH++
Sbjct: 308 IKVKGQSFMTHQIRKMVGLLVAIVKGYAPESVLERSWGEAKVHVPKAPGLGLVLERVHFE 367
Query: 261 LYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSFET 320
YNQ++G DG+HE L + + + F+ + I P +V+TE E+ M WL L H F
Sbjct: 368 KYNQRFGTDGLHEPLDWAQEEARATAFKEQHIFPSIVRTERLERSMAQWLSTLPAHDF-- 425
Query: 321 RAAKAALAAANGEELQEVTDGEEEEDEED 349
+ +A AA G ++ +G E + D
Sbjct: 426 --SASATAAGTGTKVPSPPEGSEGGGDTD 452
>gi|326929552|ref|XP_003210926.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Meleagris gallopavo]
Length = 596
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 146/304 (48%), Positives = 214/304 (70%), Gaps = 6/304 (1%)
Query: 27 RNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLP 83
RN G KTIE D++ AL ++G + E+ + + FQR ARTDKGVSA QIVSLK+
Sbjct: 140 RNLGSSQFKTIEDDLVSALVQSGCIPENHGEDMKKMSFQRCARTDKGVSAAGQIVSLKVR 199
Query: 84 E-EANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFA-TPQDTKDD- 140
+ E IN HLP IRIL +KRVT GFNSKN C+ARTY+Y PT+AFA D +++
Sbjct: 200 LIDDILEKINNHLPSHIRILGLKRVTGGFNSKNKCDARTYAYMLPTFAFAHKDHDVQEEA 259
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELIT 200
+RL+ + + +LL Y+GTHNFHNFTS++ P DPS RYIM C +PFV++ +E
Sbjct: 260 YRLSRETLEKVNSLLACYKGTHNFHNFTSQKGPKDPSARRYIMEMYCGEPFVRENIEFAV 319
Query: 201 LKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYD 260
+K+KGQSFM+HQIRKM+G+ +AI +G+ + +IE+++G ++ D+P APGLGL+LE+VH++
Sbjct: 320 IKVKGQSFMMHQIRKMIGLVIAIVKGYAPESVIERSWGEEKVDVPKAPGLGLVLERVHFE 379
Query: 261 LYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSFET 320
YN+++G DG+HE L + E ++++ F+ ++I P ++ TE EK M++WL L+ H F +
Sbjct: 380 KYNRRFGNDGLHEPLEWKEEEEKIAVFKEQYIYPTIINTEREEKSMMSWLSTLSIHDFNS 439
Query: 321 RAAK 324
AA+
Sbjct: 440 SAAE 443
>gi|321464083|gb|EFX75094.1| hypothetical protein DAPPUDRAFT_12957 [Daphnia pulex]
Length = 319
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 138/324 (42%), Positives = 210/324 (64%), Gaps = 16/324 (4%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ +YSG Y G+Q N G KT+EG++ +A K + ++SF +PQ + F
Sbjct: 6 AILLSYSGQNYLGMQF----------NHGFKTVEGELFQAFMKLEIMDDESFKSPQTVHF 55
Query: 62 QRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
QRAARTDKGVSA++Q++SLK+ P+E +N LP I++ ++++VT GFNSK C++
Sbjct: 56 QRAARTDKGVSAVRQVISLKIRTPDEDLVNQLNSLLPNCIKVFAMRKVTGGFNSKIACDS 115
Query: 120 RTYSYTCPTYAFATPQDT-KDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSC 178
R+YSY PT+AF + + +R+T + + +LL ++GT N+HNFTS R DPSC
Sbjct: 116 RSYSYVMPTFAFTSKEVAPTHGYRVTSKILDEVNSLLSVFKGTRNYHNFTSGRPAQDPSC 175
Query: 179 SRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFG 238
RYI F C PF+ +E + + IKGQSFMLHQIRKM+G+ +++ RGF +++++K F
Sbjct: 176 KRYITQFSCGDPFMIKEVEFVKITIKGQSFMLHQIRKMIGLTISVMRGFVPREILDKAFK 235
Query: 239 LDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVK 298
+++ ++P AP L LLLE+ HYD YN++YG DG+HE+L + DK++ +F FILP +
Sbjct: 236 MERVNVPTAPSLNLLLEEPHYDSYNRRYGGDGIHETLDWSSFDKDIEKFCGDFILPVIYN 295
Query: 299 TE--ITEKPMLAW-LELLADHSFE 319
E I M+ W L L H++E
Sbjct: 296 GEMDIQNGSMITWLLTCLPIHTYE 319
>gi|196008069|ref|XP_002113900.1| hypothetical protein TRIADDRAFT_57795 [Trichoplax adhaerens]
gi|190582919|gb|EDV22990.1| hypothetical protein TRIADDRAFT_57795 [Trichoplax adhaerens]
Length = 385
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 148/326 (45%), Positives = 201/326 (61%), Gaps = 11/326 (3%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ + G GYFG+Q RN+G KTIE D++ ALFKAG + E + Q +
Sbjct: 48 VALLLGFCGAGYFGMQ----------RNRGTKTIEEDLINALFKAGAIPEAAKEHEQKMA 97
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKEA-INEHLPEQIRILSIKRVTKGFNSKNNCNA 119
FQRA+RTDKGV A Q+VS K+ + A IN HLP +IR+ RVTKGFNSK C+A
Sbjct: 98 FQRASRTDKGVHAAAQVVSFKMFVVDDVIAKINSHLPREIRVFGHFRVTKGFNSKTACDA 157
Query: 120 RTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCS 179
RTY Y PTYAFA + + ++ +L Y GT NFHNFTSK+ D S
Sbjct: 158 RTYKYVMPTYAFANKEKKNMYILVIEATIKHVRDILAMYVGTRNFHNFTSKKAYEDDSAK 217
Query: 180 RYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGL 239
RYIM FDC PFV++ LE +TL +KGQSFMLHQIRKM+G+ + I RG + + +EK +
Sbjct: 218 RYIMQFDCGLPFVRNNLEFVTLTVKGQSFMLHQIRKMIGLMIGIVRGDATIEAMEKAWEK 277
Query: 240 DQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKT 299
D+ D+P APGLGL+L Q+HY YN+K + G+H ++ DKE+ +F + I ++++
Sbjct: 278 DRVDIPRAPGLGLMLYQLHYHAYNRKIERLGIHSAIDNTIFDKEIEKFTDECINEHIIQK 337
Query: 300 EITEKPMLAWLELLADHSFETRAAKA 325
E E L WLE L HSF+ + A
Sbjct: 338 ETKEFCFLKWLESLTYHSFDDQPRSA 363
>gi|307184937|gb|EFN71202.1| tRNA pseudouridine synthase A [Camponotus floridanus]
Length = 330
Score = 280 bits (715), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 146/292 (50%), Positives = 190/292 (65%), Gaps = 38/292 (13%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ Y G Y+G+Q RN GMKTIE D++ AL KA +T + F ++I F
Sbjct: 49 AILLGYLGKDYYGMQ----------RNPGMKTIEEDLVTALLKADLITTEHFKNIRSISF 98
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
QRAARTDKGVSA++QIVSLKLPE+ +K IN+ LP+ I+I IKRVTKGFNSKN C+ART
Sbjct: 99 QRAARTDKGVSAIRQIVSLKLPEKPDKTVINKFLPDVIKIFGIKRVTKGFNSKNQCDART 158
Query: 122 YSYTCPTYAFATPQD--------------------TKD-----DFRLTPDQFNFLQALLK 156
Y Y PT+AFA P+D T D D+RL+P+ N L ++LK
Sbjct: 159 YRYIIPTFAFA-PEDLTLLKIGEEINEEERIKQLSTIDGKSYVDYRLSPESLNRLNSILK 217
Query: 157 QYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKM 216
EGTHNFHNFTSK KPLDP RYI+ F C + F+ +G+E L+IKGQSFMLHQIRKM
Sbjct: 218 LMEGTHNFHNFTSKVKPLDPRAQRYIIKFHCVETFISNGMEFAILEIKGQSFMLHQIRKM 277
Query: 217 VGVAMAIARGFTSKDLIEKTF-GLDQFDLPMAPGLGLLLEQV-HYDLYNQKY 266
V V + IAR S+++I + F +D+ ++P+AP LGL L V ++ +Y Q Y
Sbjct: 278 VAVVVGIARNIISEEIINEAFKTMDRLEIPIAPSLGLCLCHVRNFVIYLQYY 329
>gi|431912100|gb|ELK14238.1| tRNA pseudouridine synthase A [Pteropus alecto]
Length = 409
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 147/332 (44%), Positives = 203/332 (61%), Gaps = 40/332 (12%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 92 IVLLVAYSGKGYHGMQ----------RNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMR 141
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLK+ + E IN HLP IRIL +KRVT GFNSKN
Sbjct: 142 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRILGLKRVTGGFNSKNR 201
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY Y PT+AFA +D +D+ +RL+ + + LL +Y+GTHNFHNFTS++ P
Sbjct: 202 CDARTYLYMLPTFAFAHKDRDVQDETYRLSAETLRRVNRLLARYKGTHNFHNFTSQKGPR 261
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+PS RY++ CE+PF +DGLE +K+ GQSFM HQIRKMVG+ +AIA+G+ +D++E
Sbjct: 262 EPSAQRYVLDMFCEEPFERDGLEFAVIKVTGQSFMTHQIRKMVGLVVAIAKGYAPEDVLE 321
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G + D+P APGLGL+LE+VH++ F+ + I P
Sbjct: 322 RSWGEAKVDVPKAPGLGLVLERVHFE------------------------RAFKEQHIYP 357
Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAA 326
+V TE E+ M WL L H F A AA
Sbjct: 358 TIVSTERHERSMAQWLSTLPVHDFSATAQAAA 389
>gi|74216027|dbj|BAE23701.1| unnamed protein product [Mus musculus]
Length = 347
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 132/281 (46%), Positives = 192/281 (68%), Gaps = 3/281 (1%)
Query: 69 KGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCP 127
+GVSA Q+VSLK+ + + IN HLP IRIL +KRVT GFNSKN C+ARTY Y P
Sbjct: 67 QGVSAAGQVVSLKVWLIDDILDKINSHLPSHIRILGLKRVTGGFNSKNKCDARTYCYMLP 126
Query: 128 TYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSF 185
T+AFA +D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P +PS RYI+
Sbjct: 127 TFAFAHKDRDVQDESYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPREPSARRYILEM 186
Query: 186 DCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLP 245
CE+PFV++GLE +K+KGQSFM+HQIRKMVG+ +AI +G+ + ++E+++G ++ D+P
Sbjct: 187 YCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGEEKVDVP 246
Query: 246 MAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKP 305
APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V F+ ++I P +V TE E+
Sbjct: 247 KAPGLGLVLERVHFEKYNQRFGGDGLHEPLDWTQEEGKVTAFKEQYIYPTIVSTERDERS 306
Query: 306 MLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEED 346
M WL L H+F A AA A E ++G+ + D
Sbjct: 307 MAQWLNTLPIHNFSGTALGAADTGAKVPSSLEGSEGDGDTD 347
>gi|47208274|emb|CAF91572.1| unnamed protein product [Tetraodon nigroviridis]
Length = 375
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 141/334 (42%), Positives = 194/334 (58%), Gaps = 43/334 (12%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+A++ AYSG GY+G+Q RN G +TIE D++ AL K+G + E+ +
Sbjct: 77 VALLLAYSGKGYYGMQ----------RNPGSSEFRTIEDDLVAALVKSGCIPENHAEDMK 126
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPEEAN-KEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA Q+VSLKL + E IN+HLP QIR+L +KRVT+GFNSKNN
Sbjct: 127 KMSFQRCARTDKGVSAAGQVVSLKLWLIDDLAEKINQHLPPQIRVLGVKRVTQGFNSKNN 186
Query: 117 CNARTYSYTCPTYAFA----TPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRK 172
C+ARTY+Y PT AFA FRL P+ + L Y+GTHNFHNFTS++
Sbjct: 187 CDARTYAYMLPTVAFAPKDSDAASDAASFRLQPETLQRVNRLFALYKGTHNFHNFTSQKA 246
Query: 173 PLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDL 232
P DPS RY+ C +PF+ E + ++GQSFMLHQIRKM+G+ +A+ +G+
Sbjct: 247 PNDPSARRYVTHVCCGEPFMGGDTEFAVITVRGQSFMLHQIRKMIGLVIAVVKGYAR--- 303
Query: 233 IEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFI 292
E+VH+D YN+++G DG+HE L + E + F+ FI
Sbjct: 304 ----------------------EEVHFDRYNKRFGGDGLHERLEWEEQGDAIQAFKEAFI 341
Query: 293 LPYLVKTEITEKPMLAWLELLADHSFETRAAKAA 326
P + +TE E M++W+ L H FE AA+A
Sbjct: 342 YPTITETERREGSMVSWMNTLPIHDFEATAAEAG 375
>gi|156405521|ref|XP_001640780.1| predicted protein [Nematostella vectensis]
gi|156227916|gb|EDO48717.1| predicted protein [Nematostella vectensis]
Length = 300
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 134/318 (42%), Positives = 199/318 (62%), Gaps = 23/318 (7%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ +Y GVGY G+Q N G++TIE ++ AL +A +T+D+ + F
Sbjct: 5 ALLISYCGVGYAGMQI----------NPGVRTIEEQLINALHQAEVITDDAKECLGKMSF 54
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANK-EAINEHLPEQIRILSIKRVTKGFNSKNNCNAR 120
QR ARTDKGVSA +Q+VSLK+ ++ IN LP +IRI + + TK F+ K NC+AR
Sbjct: 55 QRCARTDKGVSAARQVVSLKISALSSLLPKINSFLPPEIRIFGMIKTTKAFDCKQNCSAR 114
Query: 121 TYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSR 180
TY Y PT+AFA D+ ++ + L Y+GT N+HNFTS +K DPS +R
Sbjct: 115 TYEYLTPTFAFA------KDYVSRTEKIEEINKALSNYKGTKNYHNFTSGKKFEDPSANR 168
Query: 181 YIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD 240
YI+SF C +PF ++G E + L +KGQSF+LHQIRKM+G+ +A+ RG + + D
Sbjct: 169 YIISFKCGKPFERNGREFVVLTVKGQSFVLHQIRKMIGLVIAVVRG------VAPSSTFD 222
Query: 241 QFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
D+P AP LGL+L+ VH+D YN+K+G DG+HE L + +++EV +F+ FI +++ TE
Sbjct: 223 LIDIPKAPALGLVLDTVHFDAYNKKFGNDGLHEPLDWQLINEEVYKFKEDFIHKHIIDTE 282
Query: 301 ITEKPMLAWLELLADHSF 318
E M+ WL L+ H++
Sbjct: 283 TKEHTMMRWLNTLSSHTY 300
>gi|198427214|ref|XP_002128771.1| PREDICTED: similar to Pseudouridine synthase 1 [Ciona intestinalis]
Length = 531
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 137/328 (41%), Positives = 200/328 (60%), Gaps = 16/328 (4%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+AM+FAY G Y GLQ N+G +KTIEGD+ +AL A V + P
Sbjct: 71 VAMLFAYCGANYHGLQ----------MNRGERWIKTIEGDLFQALVDAKVVPSNCVQEPH 120
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPEEANKEA-INEHLPEQIRILSIKRVTKGFNSKNN 116
+ ++ A+RTDKGVS Q+ SLKL N IN+HLPE I +++++R T+GFN++
Sbjct: 121 KMTYKSASRTDKGVSTCGQVASLKLRLNENVVGLINQHLPEDIVVMAVRRTTQGFNAQLK 180
Query: 117 CNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDP 176
RTYSYT PT+AFA +++T D+ ++++L +Y+GTH+FHNFTS ++ +
Sbjct: 181 AEGRTYSYTLPTFAFADYGTGNTSYKITEDKLLKVKSILYRYKGTHSFHNFTSGKRMGEM 240
Query: 177 SCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKT 236
S R+I+ F+ PF+ +E ITL IKGQSFMLHQIRKM+G+ +A+ G + +
Sbjct: 241 SAQRFIIEFEHGDPFLVQNVEFITLTIKGQSFMLHQIRKMIGLLIAMVNGLAKEQHFIRA 300
Query: 237 FGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYL 296
F D+P APG GL+LE+VHYD +N+ G H + F +V +++EFR I PY+
Sbjct: 301 FSEPLEDIPKAPGTGLVLEKVHYDGFNK--GPAKQHGGVDFTDVQDKIDEFRKTRIFPYI 358
Query: 297 VKTEITEKPMLAWLELLADHSFETRAAK 324
K EI E ML WLE L+ H + +++K
Sbjct: 359 YKKEIEESSMLDWLETLSRHDYSGKSSK 386
>gi|449679562|ref|XP_002163885.2| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Hydra
magnipapillata]
Length = 434
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 139/336 (41%), Positives = 203/336 (60%), Gaps = 17/336 (5%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEAL-----FKAGFVTEDSFNT 55
+A++ AY G Y G+Q +N ++TIE +++AL +A E N
Sbjct: 92 VALLLAYCGANYSGMQ----------KNPDVETIEEKLLDALCEMKAIRAEHKHEFLVNN 141
Query: 56 PQNIQFQRAARTDKGVSALKQIVSLKLPEEAN-KEAINEHLPEQIRILSIKRVTKGFNSK 114
I FQRAARTDKGVSA +Q VSLKL E +N+ LP+ IR+ ++RVTK FN+K
Sbjct: 142 VNQISFQRAARTDKGVSAARQTVSLKLVASNTFLEDVNKLLPDDIRVFGLERVTKSFNAK 201
Query: 115 NNCNARTYSYTCPTYAFATPQDT-KDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKP 173
C+ R Y Y P++AFA D +R++ +QF L L YEGTHNFHNFTS +
Sbjct: 202 CCCSGRAYEYLIPSFAFAPSNDVFSPSYRISDEQFAKLNRLFSCYEGTHNFHNFTSGKPF 261
Query: 174 LDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLI 233
D S +RYI+SF +PF G E I ++I GQSFM+HQIRKM+G+ +A+ RG +D I
Sbjct: 262 SDQSANRYIISFKANKPFECQGHEFIAIEISGQSFMIHQIRKMIGLVIAVCRGHCPEDTI 321
Query: 234 EKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFIL 293
EK++ + D+P APGLGLLL +V Y+ YN+K+ DG+H+ + + E + EV F+ + I
Sbjct: 322 EKSWLQAKADIPKAPGLGLLLCKVFYNHYNEKHCNDGLHKPITWSEQELEVERFKIEHIW 381
Query: 294 PYLVKTEITEKPMLAWLELLADHSFETRAAKAALAA 329
++ EI + PM+ WL+ L +H++ K+ + +
Sbjct: 382 YSIINEEIKKSPMVTWLKTLVNHTYTKVVMKSPMPS 417
>gi|301605366|ref|XP_002932295.1| PREDICTED: tRNA pseudouridine synthase A-like [Xenopus (Silurana)
tropicalis]
Length = 394
Score = 264 bits (675), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 136/321 (42%), Positives = 198/321 (61%), Gaps = 11/321 (3%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A+M AY G GY+G+Q TIE ++ AL +A + E + + ++F
Sbjct: 72 AIMLAYCGRGYYGMQMDL-------TRPNFPTIESALISALIQARCIPEMFYMQMKQLKF 124
Query: 62 QRAARTDKGVSALKQIVSLKL-PEEANK-EAINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
QR ARTDKGVSAL Q+VS++L P +N E IN HLP +I I+ +KRVTKGF K C+
Sbjct: 125 QRCARTDKGVSALSQLVSVRLLPSCSNPVEKINSHLPPEILIIDMKRVTKGFCPKKMCDK 184
Query: 120 RTYSYTCPTYAFAT--PQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPS 177
R+YSY PT+A + P +FR+ + F+ + LL Y+GTHNFHNFTS++ DPS
Sbjct: 185 RSYSYMVPTFALSCCAPSVPDSNFRMPREDFHNINNLLSFYKGTHNFHNFTSRKAFEDPS 244
Query: 178 CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTF 237
R+++ C +PFV G E + I GQSFML+QIRKMVG+ +AIA+G D + +
Sbjct: 245 SFRHMLDVSCSEPFVFHGTEFAQIHITGQSFMLYQIRKMVGLIIAIAQGIVPADFLPQCM 304
Query: 238 GLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLV 297
++ ++P APGLGL+LE+VH+D YN++YG DG H+ + + + V+ F + ILP ++
Sbjct: 305 QREKINIPPAPGLGLVLERVHFDWYNKRYGGDGFHQPISWEKSMPTVSVFWEERILPDIL 364
Query: 298 KTEITEKPMLAWLELLADHSF 318
+ E+ M W+E L H+F
Sbjct: 365 EGELENLSMSYWIEKLNRHNF 385
>gi|324505293|gb|ADY42276.1| tRNA pseudouridine synthase A [Ascaris suum]
Length = 491
Score = 264 bits (674), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 139/332 (41%), Positives = 209/332 (62%), Gaps = 28/332 (8%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
AM+ AY G Y G+Q + + TIEG ++ A+ K G +T++ P F
Sbjct: 65 AMLIAYQGKNYCGMQVQ----------KDAPTIEGCLLNAMQKYGLITDEEVIKPNLFFF 114
Query: 62 QRAARTDKGVSALKQIVSL------KLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKN 115
QRAARTD+ VSA++Q+ S+ +LP+ E +N+ LPE IR++ I+R T+ FN++
Sbjct: 115 QRAARTDRAVSAVRQMCSMMLNFDEQLPKTVPDE-LNKLLPEDIRVMGIRRATRTFNAQK 173
Query: 116 NCNARTYSYTCPTYAFATPQD-TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
+C+ARTYSYT PTYAFA + T +R+T + N + ALL+ + GTHNF N+TSKR+
Sbjct: 174 DCDARTYSYTLPTYAFAKVDELTSSAYRITDETINEINALLQIFVGTHNFFNYTSKREFS 233
Query: 175 DPSCSRYIMSFDCEQPFV------KDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFT 228
D SC RYI+ F C F+ + +E +T+ IKGQSFMLHQIRKM+G+ +AI+RG
Sbjct: 234 DRSCFRYIIDFKCGAKFLFKNELRNEDVEFLTISIKGQSFMLHQIRKMIGMVIAISRGLL 293
Query: 229 SKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESL--HFHEVDKEVNE 286
K I+++F + D+P APGLGLLLE+VHYD Y++K+ + HE L E++ ++++
Sbjct: 294 YKSDIQRSFESARMDVPKAPGLGLLLEKVHYDHYDKKFAK--THEKLGDWGEEIEAKISD 351
Query: 287 FRHKFILPYLVKTEITEKPMLAWLELLADHSF 318
R + I+ +++ EI+ + M+ WL L H F
Sbjct: 352 VRQRLIVNEILQQEISSQSMMNWLSDLVKHDF 383
>gi|256087146|ref|XP_002579737.1| pseudouridylate synthase [Schistosoma mansoni]
gi|350644397|emb|CCD60866.1| pseudouridylate synthase, putative [Schistosoma mansoni]
Length = 428
Score = 264 bits (674), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 133/340 (39%), Positives = 208/340 (61%), Gaps = 17/340 (5%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ YSG GY+G+Q +F TIEG++ +ALF G + + + + F
Sbjct: 56 AILLMYSGWGYYGMQRCPVF----------PTIEGELSKALFTCGQLDNLTSEEHKRVHF 105
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANK-EAINEHLPEQIRILSIKRVTKGFNSKNNCNAR 120
QRA++TDK VSAL Q+ S++L E+ + +N LPE IR+L I RVT+GF+S ++C R
Sbjct: 106 QRASKTDKSVSALGQVCSMQLKEDTDLLSKLNNSLPENIRVLDIIRVTRGFSSYSSCTHR 165
Query: 121 TYSYTCPTYAFATPQDTKDD-----FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
Y Y PT+A + + +D +RLT +Q + LL++Y+GTHNF+NFTS R D
Sbjct: 166 IYDYLLPTFALSPATSSLNDSTCWTYRLTVEQITQVNRLLEKYKGTHNFYNFTSGRLVTD 225
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
SCSRYI+S +C F+ + ++I GQSFMLHQIRKM+G+A+A+ RG+ ++ + +
Sbjct: 226 RSCSRYIISAECMPTFLLGEHQYTIIRIAGQSFMLHQIRKMIGLALAVLRGYATEAVFDI 285
Query: 236 TFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPY 295
F + D+P APGLGL+L QV + YN KY DG+H+ +++ + +++ NEF+ ++ +
Sbjct: 286 VFSKARIDIPKAPGLGLMLNQVDFSQYNTKYQNDGIHQPINWSKYEEQRNEFKMHYVYEH 345
Query: 296 LVKTEITEKPMLAWLELLADHSFETRAAKAALAAA-NGEE 334
+ E E M WL L +H++ R + + L A NG +
Sbjct: 346 IDLIESKENSMFRWLSTLGNHTYSFRDSPSPLIVADNGSK 385
>gi|256087148|ref|XP_002579738.1| pseudouridylate synthase [Schistosoma mansoni]
gi|350644398|emb|CCD60867.1| pseudouridylate synthase, putative [Schistosoma mansoni]
Length = 413
Score = 263 bits (673), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 133/340 (39%), Positives = 208/340 (61%), Gaps = 17/340 (5%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ YSG GY+G+Q +F TIEG++ +ALF G + + + + F
Sbjct: 41 AILLMYSGWGYYGMQRCPVF----------PTIEGELSKALFTCGQLDNLTSEEHKRVHF 90
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANK-EAINEHLPEQIRILSIKRVTKGFNSKNNCNAR 120
QRA++TDK VSAL Q+ S++L E+ + +N LPE IR+L I RVT+GF+S ++C R
Sbjct: 91 QRASKTDKSVSALGQVCSMQLKEDTDLLSKLNNSLPENIRVLDIIRVTRGFSSYSSCTHR 150
Query: 121 TYSYTCPTYAFATPQDTKDD-----FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
Y Y PT+A + + +D +RLT +Q + LL++Y+GTHNF+NFTS R D
Sbjct: 151 IYDYLLPTFALSPATSSLNDSTCWTYRLTVEQITQVNRLLEKYKGTHNFYNFTSGRLVTD 210
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
SCSRYI+S +C F+ + ++I GQSFMLHQIRKM+G+A+A+ RG+ ++ + +
Sbjct: 211 RSCSRYIISAECMPTFLLGEHQYTIIRIAGQSFMLHQIRKMIGLALAVLRGYATEAVFDI 270
Query: 236 TFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPY 295
F + D+P APGLGL+L QV + YN KY DG+H+ +++ + +++ NEF+ ++ +
Sbjct: 271 VFSKARIDIPKAPGLGLMLNQVDFSQYNTKYQNDGIHQPINWSKYEEQRNEFKMHYVYEH 330
Query: 296 LVKTEITEKPMLAWLELLADHSFETRAAKAALAAA-NGEE 334
+ E E M WL L +H++ R + + L A NG +
Sbjct: 331 IDLIESKENSMFRWLSTLGNHTYSFRDSPSPLIVADNGSK 370
>gi|256087150|ref|XP_002579739.1| pseudouridylate synthase [Schistosoma mansoni]
gi|350644399|emb|CCD60868.1| pseudouridylate synthase, putative [Schistosoma mansoni]
Length = 369
Score = 260 bits (664), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 130/332 (39%), Positives = 203/332 (61%), Gaps = 16/332 (4%)
Query: 7 YSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAAR 66
YSG GY+G+Q +F TIEG++ +ALF G + + + + FQRA++
Sbjct: 2 YSGWGYYGMQRCPVF----------PTIEGELSKALFTCGQLDNLTSEEHKRVHFQRASK 51
Query: 67 TDKGVSALKQIVSLKLPEEANK-EAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYT 125
TDK VSAL Q+ S++L E+ + +N LPE IR+L I RVT+GF+S ++C R Y Y
Sbjct: 52 TDKSVSALGQVCSMQLKEDTDLLSKLNNSLPENIRVLDIIRVTRGFSSYSSCTHRIYDYL 111
Query: 126 CPTYAFATPQDTKDD-----FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSR 180
PT+A + + +D +RLT +Q + LL++Y+GTHNF+NFTS R D SCSR
Sbjct: 112 LPTFALSPATSSLNDSTCWTYRLTVEQITQVNRLLEKYKGTHNFYNFTSGRLVTDRSCSR 171
Query: 181 YIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD 240
YI+S +C F+ + ++I GQSFMLHQIRKM+G+A+A+ RG+ ++ + + F
Sbjct: 172 YIISAECMPTFLLGEHQYTIIRIAGQSFMLHQIRKMIGLALAVLRGYATEAVFDIVFSKA 231
Query: 241 QFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
+ D+P APGLGL+L QV + YN KY DG+H+ +++ + +++ NEF+ ++ ++ E
Sbjct: 232 RIDIPKAPGLGLMLNQVDFSQYNTKYQNDGIHQPINWSKYEEQRNEFKMHYVYEHIDLIE 291
Query: 301 ITEKPMLAWLELLADHSFETRAAKAALAAANG 332
E M WL L +H++ R + + L A+
Sbjct: 292 SKENSMFRWLSTLGNHTYSFRDSPSPLIVADN 323
>gi|167524395|ref|XP_001746533.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774803|gb|EDQ88429.1| predicted protein [Monosiga brevicollis MX1]
Length = 415
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 125/319 (39%), Positives = 187/319 (58%), Gaps = 14/319 (4%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ + G Y G+Q RN G +TIE ++ AL G + ++++ TPQ++ F
Sbjct: 34 ALLMGFQGTSYAGMQ----------RNIGFETIESTLLRALLVTGCIDKNNYETPQSMHF 83
Query: 62 QRAARTDKGVSALKQIVSLKLP-EEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNAR 120
QR ARTDKGV A +Q+V++++ E + +N LP+ IRI R TKGFN KN C R
Sbjct: 84 QRCARTDKGVHAARQVVAMRMILTENTVDELNAKLPDDIRIFGAFRTTKGFNPKNACTGR 143
Query: 121 TYSYTCPTYAFATPQDTK-DDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCS 179
Y Y PTYA + ++R+ + + + LK+Y GTH FHNFT+ + D SC
Sbjct: 144 RYEYLLPTYALMPKEKVPVPEYRVDEPKLTWFRETLKRYIGTHKFHNFTAGKSASDDSCR 203
Query: 180 RYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGL 239
RYI F +PF ++G+E + +++KGQSF+LHQIRKM+G+A+AI RG D +++ F
Sbjct: 204 RYITDFTVSEPFEREGIEWVRIQVKGQSFILHQIRKMIGLAVAIVRGHVKDDYMDRCFSD 263
Query: 240 DQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKT 299
++ D+P PGLGL L+ V +D YN++Y H+ L F D V F+ I +++
Sbjct: 264 ERVDVPKIPGLGLFLDCVFFDYYNKQYSN--QHQILEFGAYDDVVESFKAAKIHSHIISQ 321
Query: 300 EITEKPMLAWLELLADHSF 318
E E+ +L WL LL H F
Sbjct: 322 EKQEQVILRWLNLLFIHRF 340
>gi|268568248|ref|XP_002647980.1| C. briggsae CBR-PUS-1 protein [Caenorhabditis briggsae]
Length = 437
Score = 250 bits (639), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 143/373 (38%), Positives = 213/373 (57%), Gaps = 38/373 (10%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
AM+ Y G Y+G+Q + + + TIE ++EA+ KAG++T P + F
Sbjct: 36 AMLLGYQGKKYYGMQLQ----------KDLPTIESKLLEAMEKAGWITAAQREKPFDFFF 85
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAI------NEHLPEQIRILSIKRVTKGFNSKN 115
QRAARTD+ VSA +Q+ ++LP + K + N LP IR+ +KR F+ +
Sbjct: 86 QRAARTDRAVSAARQMCGMQLPRDDEKYKVDGPGILNNLLPNDIRVFGMKRTINFFHPQK 145
Query: 116 NCNARTYSYTCPTYAFATPQD-TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ RTYSYTCPT+ FA P + T FR++ + + +L Y+GTHNF N+T+KR
Sbjct: 146 QCDYRTYSYTCPTFVFAKPTELTNAAFRISKETLAEVNDILSIYKGTHNFFNYTAKRAYD 205
Query: 175 DPSCSRYIMSFDCEQPFV------KDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFT 228
D S +RYI+SF+C++PF+ K+ +E I + +KGQSF+LHQIRKMVG+ + + R
Sbjct: 206 DMSSNRYIVSFECKEPFLFRDEFRKEDVEFIQIVVKGQSFVLHQIRKMVGMVITVVRELH 265
Query: 229 SKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESL-HFHE-VDKEVNE 286
K I+++F + D+PMAPGLGLLLE+ HYD Y++K+ +D HE L + E ++KEV
Sbjct: 266 LKSAIQRSFEGQRMDIPMAPGLGLLLERTHYDSYDKKHSKD--HEPLTDWGEIIEKEVER 323
Query: 287 FRHKFILPYLVKTEITEKPMLAWLELLADHSF-----------ETRAAKAALAAANGEEL 335
+ + I +++TE+ + ML WL L H F +T AA A +
Sbjct: 324 TKFELITKDMLETELLSQGMLKWLADLVHHDFSSNPEAEEPEKKTFVTMAAACANKALKE 383
Query: 336 QEVTDGEEEEDEE 348
QE T E E E
Sbjct: 384 QEATSSEAPEASE 396
>gi|308507857|ref|XP_003116112.1| CRE-PUS-1 protein [Caenorhabditis remanei]
gi|308251056|gb|EFO95008.1| CRE-PUS-1 protein [Caenorhabditis remanei]
Length = 438
Score = 248 bits (632), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 126/330 (38%), Positives = 198/330 (60%), Gaps = 23/330 (6%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
AM+ Y G Y+G+Q + + + TIE ++EA+ KAG++T + P + F
Sbjct: 36 AMLLGYQGKKYYGMQLQ----------KDLPTIESKLLEAMEKAGWITAAQRDKPFDFFF 85
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANK------EAINEHLPEQIRILSIKRVTKGFNSKN 115
QRAARTD+ VSA +Q+ ++LP + +K +N LP+ IR+ ++R F+ +
Sbjct: 86 QRAARTDRAVSAARQMCGMQLPRDDDKYQTDGAGVLNNLLPDDIRVFGMRRTINFFHPQK 145
Query: 116 NCNARTYSYTCPTYAFATPQD-TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ RTYSYTCP++ FA P + T FRL + + +L Y+GTHNF N+T+KR
Sbjct: 146 QCDYRTYSYTCPSFVFAKPTELTNSAFRLPKETLAEVNDILSIYKGTHNFFNYTAKRAYN 205
Query: 175 DPSCSRYIMSFDCEQPFV------KDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFT 228
D S +RYI+SF+C++PF+ K+ +E + + +KGQSF+LHQIRKMVG+ + + R
Sbjct: 206 DMSSNRYIVSFECKEPFLFRDEFRKEDVEFVQIVVKGQSFVLHQIRKMVGMVITVVRELH 265
Query: 229 SKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFR 288
K I+++F + D+PMAPGLGLLLE+ HYD Y++K +D + ++KEV +
Sbjct: 266 LKSAIQRSFEGQRMDIPMAPGLGLLLERTHYDCYDKKNAKDHQPLTDWGEIIEKEVERTK 325
Query: 289 HKFILPYLVKTEITEKPMLAWLELLADHSF 318
+ I +++TE+ + M+ WL L H F
Sbjct: 326 FELITKDMLETELVSQGMMKWLADLVHHDF 355
>gi|341894021|gb|EGT49956.1| CBN-PUS-1 protein [Caenorhabditis brenneri]
Length = 431
Score = 247 bits (631), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 127/330 (38%), Positives = 197/330 (59%), Gaps = 23/330 (6%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
AM+ Y G YFG+Q + + + TIE ++EA+ KAG++T + P + F
Sbjct: 38 AMLLGYQGKKYFGMQLQ----------KDLPTIESKLLEAMEKAGWITPAQRDKPFDFFF 87
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANK------EAINEHLPEQIRILSIKRVTKGFNSKN 115
QRAARTD+ VSA++Q+ ++LP + K +N+ LP IR+ ++R T F+ +
Sbjct: 88 QRAARTDRAVSAVRQMCGMQLPRDDAKYQTEGAGILNDLLPADIRVFGMRRTTNFFHPQK 147
Query: 116 NCNARTYSYTCPTYAFATPQD-TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ RTYSYTCP++ FA P + T +R++P+ + +L Y+GTHNF N+T+KR
Sbjct: 148 QCDYRTYSYTCPSFVFAKPTELTNASYRISPETLAEVNDILSIYKGTHNFFNYTAKRAYD 207
Query: 175 DPSCSRYIMSFDCEQPFV------KDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFT 228
D S +RYI+SF+C++PF+ + +E + + +KGQSF+LHQIRKMVG+ + + R
Sbjct: 208 DMSSNRYIVSFECKKPFLFRDEFRNEDVEFVQITVKGQSFVLHQIRKMVGMVICVVRELH 267
Query: 229 SKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFR 288
K I+++F + D+PMAPGLGLLLEQ HYD Y++K + S ++KEV +
Sbjct: 268 LKSAIQRSFEGQRMDIPMAPGLGLLLEQTHYDSYDRKNSKSHEPLSDWGEMIEKEVQRTK 327
Query: 289 HKFILPYLVKTEITEKPMLAWLELLADHSF 318
+ I ++ E+ + ML WL L H F
Sbjct: 328 FELITKDTLEMELLSQGMLKWLADLVHHDF 357
>gi|17565126|ref|NP_507242.1| Protein PUS-1, isoform a [Caenorhabditis elegans]
gi|3880517|emb|CAA16518.1| Protein PUS-1, isoform a [Caenorhabditis elegans]
Length = 415
Score = 247 bits (630), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 133/336 (39%), Positives = 204/336 (60%), Gaps = 27/336 (8%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
AM+ Y G Y+G+Q + + + TIE ++EA+ AG++T P + F
Sbjct: 36 AMLLGYQGKKYYGMQLQ----------KDLPTIESKLLEAMETAGWITTAQKEKPFDFFF 85
Query: 62 QRAARTDKGVSALKQIVSLKLP-EEANKEA-----INEHLPEQIRILSIKRVTKGFNSKN 115
QRAARTD+ VSA +Q+ ++LP ++A +A +N LP IR+ ++R T F+ +
Sbjct: 86 QRAARTDRAVSAARQMCGMQLPRDDAKYQAEGAGILNNILPADIRVFGMRRTTNFFHPQK 145
Query: 116 NCNARTYSYTCPTYAFATPQD-TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ RTYSYTCP++ FA P + T FRL+P+ + ++L Y GTHNF N+T+KR
Sbjct: 146 QCDHRTYSYTCPSFVFAKPTELTNSSFRLSPETLAEVNSILSIYLGTHNFFNYTAKRAYD 205
Query: 175 DPSCSRYIMSFDCEQPFV------KDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFT 228
D S +RYI+SF+C++PF+ K+ +E + + IKGQSF+LHQIRKMVG+ + + R
Sbjct: 206 DMSSNRYIISFECKEPFLFRDDFRKEDVEFVQIVIKGQSFVLHQIRKMVGMVITVIRELH 265
Query: 229 SKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESL-HFHE-VDKEVNE 286
K I+++F + D+PMAPGLGLLLE+ HYD Y++K + HE L + E ++KE+
Sbjct: 266 LKSSIQRSFEGQRMDIPMAPGLGLLLERTHYDSYDRKNSKS--HEPLTDWGEIIEKEIER 323
Query: 287 FRHKFILPYLVKTEITEKPMLAWLELLADHSFETRA 322
+ + I +++TE+ + ML WL L H F A
Sbjct: 324 TKFELITKDMIETELLTQGMLKWLADLVHHDFTANA 359
>gi|393910108|gb|EJD75741.1| tRNA pseudouridylate synthase Lsp1 [Loa loa]
gi|393910109|gb|EJD75742.1| tRNA pseudouridylate synthase Lsp1, variant [Loa loa]
Length = 517
Score = 240 bits (612), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 129/331 (38%), Positives = 194/331 (58%), Gaps = 28/331 (8%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ AY G Y G+Q + F T+EG++ +A+ K G+++ED +P F
Sbjct: 105 ALLLAYQGKKYNGMQVQKDF----------PTVEGELFKAMAKCGYISEDDILSPVRFAF 154
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANK-------EAINEHLPEQIRILSIKRVTKGFNSK 114
QRAARTD+ VSA +Q+ S++L E ++ + +N LPE+IR++ ++R T+ F +
Sbjct: 155 QRAARTDRSVSAARQMCSMRLAPENHEYFLKTASDKLNAQLPEEIRVMGVRRATRSFKAH 214
Query: 115 NNCNARTYSYTCPTYAFATPQD-TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKP 173
NC+ RTYSYT P+YAFA + T FR++ L LL Y+GTHNF N+TS R
Sbjct: 215 KNCDKRTYSYTLPSYAFARADELTNSAFRISETSVTELNDLLALYKGTHNFFNYTSGRTY 274
Query: 174 LDPSCSRYIMSFDCE-----QPFVKDGL-ELITLKIKGQSFMLHQIRKMVGVAMAIARGF 227
D S RYI F C + V+ G+ E I+L + GQSFMLHQIRKM+G+ +A RG
Sbjct: 275 EDRSNMRYIHDFKCGPTQLVEDKVRGGMVEFISLYVTGQSFMLHQIRKMIGMTVATFRGL 334
Query: 228 TSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFH--EVDKEVN 285
K +E TF ++ D+P APGLGL+L++VHY+ Y++ Y + H+ L+ E++ +
Sbjct: 335 CGKTELENTFRSERMDVPKAPGLGLVLDKVHYERYDRWY--EKTHQKLNNWGDEIEARAD 392
Query: 286 EFRHKFILPYLVKTEITEKPMLAWLELLADH 316
EFR +I+ + + E+ M WL L H
Sbjct: 393 EFRKLYIIAEIYRQELATHSMFLWLTTLLRH 423
>gi|291227559|ref|XP_002733751.1| PREDICTED: PseudoUridine Synthase family member (pus-1)-like
[Saccoglossus kowalevskii]
Length = 320
Score = 240 bits (612), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 117/258 (45%), Positives = 169/258 (65%), Gaps = 13/258 (5%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ ++ +YSG GY G+Q RN+G++TIEGD+++A+ AG V + + PQ +Q
Sbjct: 58 VVLLLSYSGKGYMGMQ----------RNKGVETIEGDLIKAIVTAGAVPQSHADIPQKMQ 107
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK-EAINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
FQR ARTDKGVSA++Q+VSLK+ N E IN LP IR+++ KR T GFN+KN C+
Sbjct: 108 FQRCARTDKGVSAVRQVVSLKMMLVDNAVEQINNSLPPSIRVITYKRTTGGFNAKNTCSH 167
Query: 120 RTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCS 179
RTYSY PT+A ++ + +++R+T + Q LL Y+GTHNFHNFTS + + S
Sbjct: 168 RTYSYLMPTFALSS--NCNENYRVTDEVHQKAQDLLNCYKGTHNFHNFTSGKAFTEQSAM 225
Query: 180 RYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGL 239
R++ + Q FV+ GLE + + I GQSFM+HQIRKM+G+ +AI RG K ++K +
Sbjct: 226 RFMRELNVSQAFVRCGLEFVVITIIGQSFMIHQIRKMIGLVIAIIRGVAPKSTLDKCWEA 285
Query: 240 DQFDLPMAPGLGLLLEQV 257
+ D+P AP LGL+LE V
Sbjct: 286 GKMDIPKAPSLGLMLENV 303
>gi|76156463|gb|ABA40375.1| SJCHGC06804 protein [Schistosoma japonicum]
Length = 334
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 121/292 (41%), Positives = 182/292 (62%), Gaps = 16/292 (5%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ YSG GY+G+Q R TIEG++ +ALF G + + + + F
Sbjct: 50 AILMMYSGWGYYGMQ----------RGPIYPTIEGELSKALFTCGQLVNVTSEEHKKVNF 99
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANK-EAINEHLPEQIRILSIKRVTKGFNSKNNCNAR 120
QRA++TDK VSAL Q+ SLKL ++A+ +N LP+ IRIL I RVT+ F+S N+C R
Sbjct: 100 QRASKTDKYVSALGQVCSLKLYDDADLLNKLNTALPQDIRILDIIRVTRSFSSYNSCTHR 159
Query: 121 TYSYTCPTYAFATPQDTKDD-----FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
Y Y PT+A ++ + D +R+T ++ L LL++Y+GTHNF+NFTS R P D
Sbjct: 160 VYDYLLPTFALSSGNLSLSDSTCWTYRVTAEKITKLNNLLERYKGTHNFYNFTSGRLPTD 219
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
SC R+I S +C F+ E ++I GQSFMLHQ+RKM+G+ + I RG+ ++D+ +
Sbjct: 220 KSCYRHIKSVECIPTFLLGEHEYTVIRIIGQSFMLHQVRKMIGLVLGILRGYATEDVFDI 279
Query: 236 TFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEF 287
F ++ D+P APGLGL+L QV + YN+KY DG+H+ L + + + + N+F
Sbjct: 280 VFCKERVDIPKAPGLGLMLNQVDFSYYNKKYQNDGIHQPLDWSKYEDQRNKF 331
>gi|302809155|ref|XP_002986271.1| hypothetical protein SELMODRAFT_44320 [Selaginella moellendorffii]
gi|300146130|gb|EFJ12802.1| hypothetical protein SELMODRAFT_44320 [Selaginella moellendorffii]
Length = 363
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 134/371 (36%), Positives = 190/371 (51%), Gaps = 65/371 (17%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ +YSG GY G+Q RN+G KTIEGD+ EALFKAG + E +F P+ I
Sbjct: 3 IAIFVSYSGYGYQGMQ----------RNKGCKTIEGDLEEALFKAGAIAESTFGDPRKID 52
Query: 61 FQRAARTDKGVSALKQIVSLK--LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ RAARTDKGVSA Q+VS + + E +N HLP+QIR+L RVT F++KN C+
Sbjct: 53 WARAARTDKGVSAAGQVVSGRFFVDPPGFVERVNSHLPKQIRVLGFTRVTGTFSAKNLCD 112
Query: 119 ARTYSYTCPTYAF------------------------ATPQDTKDD-------------- 140
R Y Y P +A T +D ++D
Sbjct: 113 RRRYEYVLPVFALDPASHRVESPTIEAANPGDNLGEAITSEDVEEDTTSTTGTTTGRFTP 172
Query: 141 ------------FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE 188
F ++ L +L+ Y GT FHNFT + KP DPS RYI S++
Sbjct: 173 TCTCTSSDLETGFTFGDEERAKLTKILQNYVGTRYFHNFTCRVKPEDPSTQRYITSYEAG 232
Query: 189 QPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMA 247
+ F G + + + GQSFMLHQIRKM+G+A+A+ RG + + E+ F D + +PMA
Sbjct: 233 EVFTIQGCKFVRCTVIGQSFMLHQIRKMIGLAVAVMRGDAPETIFERAFRRDTKIGVPMA 292
Query: 248 PGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPML 307
P LGL L++ Y YNQ++ G HE + +KE+ EF+ + I P++ TE +
Sbjct: 293 PELGLFLDECLYTAYNQRFA--GSHEEVSLKSFEKEIAEFKTEVIYPHIASTEAKDGVFA 350
Query: 308 AWLELLADHSF 318
WL L +
Sbjct: 351 RWLHGLTKERY 361
>gi|302806719|ref|XP_002985091.1| hypothetical protein SELMODRAFT_44317 [Selaginella moellendorffii]
gi|300147301|gb|EFJ13966.1| hypothetical protein SELMODRAFT_44317 [Selaginella moellendorffii]
Length = 363
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 134/371 (36%), Positives = 190/371 (51%), Gaps = 65/371 (17%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ +YSG GY G+Q RN+G KTIEGD+ EALFKAG + E +F P+ I
Sbjct: 3 IAIFVSYSGYGYQGMQ----------RNKGCKTIEGDLEEALFKAGAIAESTFGDPRKID 52
Query: 61 FQRAARTDKGVSALKQIVSLK--LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ RAARTDKGVSA Q+VS + + E +N HLP+QIR+L RVT F++KN C+
Sbjct: 53 WARAARTDKGVSAAGQVVSGRFFVDPPGFVERVNSHLPKQIRVLGFTRVTGTFSAKNLCD 112
Query: 119 ARTYSYTCPTYAF------------------------ATPQDTKDD-------------- 140
R Y Y P +A T +D ++D
Sbjct: 113 RRRYEYVLPVFALDPASHRVESPTIEAANPGDNPGEAITSEDVEEDTTSTTGTTTGRFTP 172
Query: 141 ------------FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE 188
F ++ L +L+ Y GT FHNFT + KP DPS RYI S++
Sbjct: 173 TCTCTSSDLETGFTFGDEERAKLTKILQNYVGTRYFHNFTCRVKPEDPSTQRYITSYEAG 232
Query: 189 QPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMA 247
+ F G + + + GQSFMLHQIRKM+G+A+A+ RG + + E+ F D + +PMA
Sbjct: 233 EVFTIQGCKFVRCTVIGQSFMLHQIRKMIGLAVAVMRGDAPETIFERAFRRDTKIGVPMA 292
Query: 248 PGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPML 307
P LGL L++ Y YNQ++ G HE + +KE+ EF+ + I P++ TE +
Sbjct: 293 PELGLFLDECLYTAYNQRFA--GSHEEVSLKSFEKEIAEFKTEVIYPHIASTEAKDGVFA 350
Query: 308 AWLELLADHSF 318
WL L +
Sbjct: 351 RWLHGLTKERY 361
>gi|313231689|emb|CBY08802.1| unnamed protein product [Oikopleura dioica]
Length = 443
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 127/325 (39%), Positives = 187/325 (57%), Gaps = 18/325 (5%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+A++ +Y G Y GLQ N G + TIE + +AL A V + N +
Sbjct: 83 VAILISYCGKNYHGLQ----------HNPGDDKVDTIEKRVFQALVAAKVVYSNVINDRK 132
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPEEAN-KEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+Q +RTDKGVSA+ + SLK N E +N HLP+ IR+ S ++VTKGF +K
Sbjct: 133 KCAYQSCSRTDKGVSAIGNVASLKCKIPKNLCELVNAHLPDDIRLTSFEQVTKGFCAKKR 192
Query: 117 CNARTYSYTCPTYAFATPQDTK--DDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C RTYSY CPT F + +D FR++ ++ ++ LLK+Y GT ++HNFTS ++
Sbjct: 193 CTHRTYSYYCPTICFGSKEDWDRPSSFRISTEKLEGVRELLKKYIGTRSYHNFTSGKRQG 252
Query: 175 DPSCSRYIMSFDCE-QPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLI 233
D S R+I+ F + PF+ + E + L++ GQSFM+HQIRKMVG+ +A A D
Sbjct: 253 DESAKRHILDFRIQGDPFICNEWEYVELRVVGQSFMIHQIRKMVGLIIARAGNHCQDDHW 312
Query: 234 EKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFIL 293
E+ F D+P APG GL+L QVHYD+YN+ YG D +L + + ++++F K IL
Sbjct: 313 ERAFQRPFEDVPKAPGNGLVLRQVHYDVYNKDYGTD-KRRALEWTDKQNDMDDFATKNIL 371
Query: 294 PYLVKTEITEKPMLAWLELLADHSF 318
P + K + E+ M+ WL+ L H F
Sbjct: 372 PVIFKMDTEEESMVEWLKTLQVHDF 396
>gi|325190406|emb|CCA24877.1| tRNA pseudouridine synthase putative [Albugo laibachii Nc14]
Length = 463
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 139/379 (36%), Positives = 197/379 (51%), Gaps = 60/379 (15%)
Query: 6 AYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAA 65
AY G Y G+Q N+G+ TIE ++ ALF+AG +++ ++ Q I + RAA
Sbjct: 79 AYCGEKYSGMQL----------NEGVATIEAELERALFQAGGISDANYGFLQKIGWSRAA 128
Query: 66 RTDKGVSALKQIVSLKLP------EEANKE-------AINEHLPEQIRILSIKRVTKGFN 112
RTDKGV A Q+V+ KL E+ N E IN LP IR++ + VTK FN
Sbjct: 129 RTDKGVHAAGQLVTAKLSFDSKSSEDRNGEQIKGFIEKINASLPSDIRVMDMVTVTKNFN 188
Query: 113 SKNNCNARTYSYTCPTYAFATPQ--DTKDD-------------------------FRLTP 145
+K +C+ RTY Y PT+ FA Q D KD +R++
Sbjct: 189 AKLSCDYRTYEYLIPTFVFAGRQRKDHKDPVKVTQAEEIVPKTTDLHLDVNHQQAYRMST 248
Query: 146 DQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV--KDGLELITLKI 203
+Q++ L +L ++EG+H FHNFTSK P P C RYI+SF +QPFV E I L++
Sbjct: 249 EQYDDLNRILAKFEGSHTFHNFTSKLLPTSPKCQRYIVSFKADQPFVPSNSAFEWIRLRV 308
Query: 204 KGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYN 263
KGQSF+LHQIRKM+G A+ + G ++IE+ LD+ DLP AP +GL L + H++ YN
Sbjct: 309 KGQSFLLHQIRKMIGTAVDLCAGAAESNVIERVMLLDKMDLPKAPSVGLYLSEAHFEKYN 368
Query: 264 QKYGQ-----DGMHESLHFHEVDKEVN---EFRHKFILPYLVKTEITEKPMLAWLELLAD 315
K GQ + H +L D V+ F+ I P++ + E T++ WLE L
Sbjct: 369 LKLGQTSGQDNQAHPNLKLTSKDTVVDAVEAFKQTHIFPHIFEQESTQRTYGTWLETLCR 428
Query: 316 HSFETRAAKAALAAANGEE 334
F A+ EE
Sbjct: 429 MPFSYHLETYAVWKVGKEE 447
>gi|145355737|ref|XP_001422107.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582347|gb|ABP00424.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 308
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 125/317 (39%), Positives = 182/317 (57%), Gaps = 22/317 (6%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A+ FAY G GY G+Q RN G++TIEG++ A+ +AG +++ + +Q+
Sbjct: 6 AVTFAYVGAGYAGMQ----------RNPGVRTIEGELEGAIARAGGISDANAGDFAKVQW 55
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANK--EAINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
RAARTDKGVSA+ Q+V+LK+ E + E IN LPE+ + I RVT GFN+K C+
Sbjct: 56 TRAARTDKGVSAVGQVVALKMVLEPSGMVERINAALPERFEVFGIDRVTGGFNAKTMCDR 115
Query: 120 RTYSYTCPTYAF---ATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDP 176
R Y Y PT AF + + F T + + + +LK Y GTHNFHN+T K KP D
Sbjct: 116 RRYEYVIPTRAFDPNLGAEGAAEAFAFTEETRSRVDGVLKNYCGTHNFHNYTVKVKPTDA 175
Query: 177 SCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKT 236
RYI+SF+C PF +G + + ++ GQSFMLHQIRK++G +A+ RG ++D ++
Sbjct: 176 QAKRYIISFECSAPFEVEGEQFVRCQVVGQSFMLHQIRKLIGTMLAVVRGELTED--DQK 233
Query: 237 FGLDQFDL---PMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFIL 293
F L + PMAP LGL L + Y YN K+G G+HE+ + + F+ +
Sbjct: 234 FALLTHEFVPTPMAPELGLFLCECIYKAYNDKFG--GVHENFELAKYSERSESFKQTHVY 291
Query: 294 PYLVKTEITEKPMLAWL 310
P++ K E E M W+
Sbjct: 292 PHIAKQEREESTMQNWI 308
>gi|281201760|gb|EFA75968.1| tRNA pseudouridylate synthase [Polysphondylium pallidum PN500]
Length = 531
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 128/335 (38%), Positives = 189/335 (56%), Gaps = 32/335 (9%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ YSG Y G+Q +N G TIE ++ +A+FK G ++ D+ + I
Sbjct: 132 VAICVGYSGTNYRGMQ----------KNPGFPTIEDELEKAIFKVGGISPDNMYCHRKID 181
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEAN-----KEAINEHLPEQIRILSIKRVTKGFNSKN 115
+ R ARTDKGVSA++ +VS KL + K AIN LP IR+ +IKRV F++KN
Sbjct: 182 WIRCARTDKGVSAIRNMVSCKLEYDPPTLDEMKTAINAQLPNDIRVFAIKRVNNTFHAKN 241
Query: 116 NCNARTYSYTCPTYAFAT--PQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKP 173
+ R+Y Y PT+AF + ++ + L +LLK + GT +HN+TSK++
Sbjct: 242 CVDRRSYIYITPTFAFEPIFANNKPAQYKFDELERTRLNSLLKLFVGTRKYHNYTSKKES 301
Query: 174 LDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIAR-GFTS--- 229
DPS R + SF+C +PF+ +G+EL+ + I GQSFMLHQIRKM+GV M R GF +
Sbjct: 302 NDPSAVRTVNSFECSEPFMNEGVELVAINIVGQSFMLHQIRKMIGVTMQFMRKGFFADSE 361
Query: 230 ---------KDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEV 280
K L+E TF QF+LPMAPG GLLL++ YD++ QK+G +H L F+E
Sbjct: 362 SDEAALSKMKKLVEATFAHRQFNLPMAPGAGLLLDRCLYDIWTQKFG--SVHGDLMFNEQ 419
Query: 281 DKEVNEFRHKFILPYLVKTEITEKPMLAWLELLAD 315
+E+ F+ + + K E ++ W + D
Sbjct: 420 AEEIEAFKKDRVYKEIAKFESEQQLFKTWFKDCLD 454
>gi|432095058|gb|ELK26447.1| tRNA pseudouridine synthase A, mitochondrial [Myotis davidii]
Length = 214
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 108/199 (54%), Positives = 145/199 (72%), Gaps = 3/199 (1%)
Query: 59 IQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNNC 117
+ FQR ARTDKGVSA Q+VSLK+ + E IN HLP IRIL +KRVT GFNSKN C
Sbjct: 1 MSFQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRILGLKRVTGGFNSKNRC 60
Query: 118 NARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+ARTY Y PT+AFA +D +D+ +RL+ D + LL Y+GTHNFHNFTS++ P +
Sbjct: 61 DARTYVYMLPTFAFAHKDRDAQDETYRLSADTLRQVNRLLACYKGTHNFHNFTSQKGPRE 120
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
PS RY++ CE+PF +DG+E +K+KGQSFM HQIRKMVG+ +AI +G+ +D++E+
Sbjct: 121 PSAQRYVLDMFCEEPFERDGMEFAVIKVKGQSFMTHQIRKMVGLVVAIVKGYAPEDVLER 180
Query: 236 TFGLDQFDLPMAPGLGLLL 254
++G + D+P APGLGL+L
Sbjct: 181 SWGEAKVDVPKAPGLGLVL 199
>gi|348686693|gb|EGZ26507.1| hypothetical protein PHYSODRAFT_308307 [Phytophthora sojae]
Length = 497
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 133/365 (36%), Positives = 189/365 (51%), Gaps = 64/365 (17%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
+ A+ G Y G+Q N+G+KTIE ++ ALF+AG + E ++ Q I +
Sbjct: 75 LWVAFCGKNYSGMQM----------NEGVKTIEAELERALFEAGGIAESNYGFLQKIGWS 124
Query: 63 RAARTDKGVSALKQIVSLKL--PEEANKEA----INEHLPEQIRILSIKRVTKGFNSKNN 116
RAARTDKGV A Q+++ KL E+A+ A +N LPE IR++ + VTK FN+K
Sbjct: 125 RAARTDKGVHAAGQLLTAKLHVGEDADIPAFVGKVNAALPEDIRVMHMVTVTKNFNAKMT 184
Query: 117 CNARTYSYTCPTYAFAT------------------------PQDTKDD------------ 140
C+ RTY Y PT+ FA P D +D
Sbjct: 185 CDQRTYEYLAPTFIFAKRARAAAIKESEKTEEKGDAATAQWPSDLRDSEEGFDDNVVIDN 244
Query: 141 --------FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV 192
FRL+ + L A LK+Y GTHNFHNFTSK +P +P R+I+SF+ E+PFV
Sbjct: 245 TTLEAHKAFRLSDETLEKLNATLKEYVGTHNFHNFTSKMEPTNPQAKRFIISFEAERPFV 304
Query: 193 KDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGL 252
++ +E + L++ GQSF+LH IRKM+G A+ I G T IE+ L + DLP AP +GL
Sbjct: 305 QNDMEWVRLRVVGQSFLLHHIRKMIGTAVEIVSGVTDPSTIERAMQLTKMDLPKAPSVGL 364
Query: 253 LLEQVHYDLYNQKYGQD--GMHESLHFHE--VDKEVNEFRHKFILPYLVKTEITEKPMLA 308
L Q H+++YN K + H L E V V F+ FI +++K E +
Sbjct: 365 YLAQAHFEVYNLKMAESIQTSHPPLDLKEPAVAAAVELFKRDFIFDHIMKHEERTRTYAK 424
Query: 309 WLELL 313
WL +
Sbjct: 425 WLRTM 429
>gi|339248313|ref|XP_003375790.1| tRNA pseudouridine synthase A [Trichinella spiralis]
gi|316970789|gb|EFV54664.1| tRNA pseudouridine synthase A [Trichinella spiralis]
Length = 390
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 129/345 (37%), Positives = 191/345 (55%), Gaps = 23/345 (6%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
AM AY G Y G+Q N + T+E IMEAL K +T D P +F
Sbjct: 55 AMFLAYRGKNYHGMQV----------NPNVPTVEKYIMEALQKLNLITVDQVVQPSLFKF 104
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
QRAARTDKGVSA KQI SL LP KE +L + ++R TK F+SK C+ R+
Sbjct: 105 QRAARTDKGVSATKQICSLLLPTIEGKENDTVNL-----LNGLQRATKSFDSKKWCDYRS 159
Query: 122 YSYTCPTYAFATPQDT-KDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSR 180
YSYT P+Y F D +D FRL + +L QY GTHNF+NFTS + D SC R
Sbjct: 160 YSYTLPSYCFRHQSDLERDKFRLDNKDIEEINRILMQYVGTHNFYNFTSGKLHKDESCKR 219
Query: 181 YIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD 240
+I+ +C + F+ + +E +T+ IKGQSF++HQIRKM+G +++ RG L +K + +
Sbjct: 220 FIIRCECGKRFLYNNIEYLTVDIKGQSFLIHQIRKMIGFCISLIRGDLDPCLQQKVWQNE 279
Query: 241 QFDLPMAPGLGLLLEQV---HYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLV 297
+ +P AP LGL+LE+V HY+ YN+++ H+ L + ++ EF+ +I+ ++
Sbjct: 280 RIKVPKAPSLGLVLEEVRMPHYEHYNKRF--QATHQRLCWDIYQEKCEEFKQAYIIKDIL 337
Query: 298 KTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGE 342
+T+ +EK WL L + + + + +Q TDG+
Sbjct: 338 ETDESEKIFEEWLTYLTEKFWNENDVDDVSIVGHSDNVQ--TDGK 380
>gi|301091109|ref|XP_002895746.1| tRNA pseudouridine synthase [Phytophthora infestans T30-4]
gi|262096658|gb|EEY54710.1| tRNA pseudouridine synthase [Phytophthora infestans T30-4]
Length = 470
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 126/361 (34%), Positives = 187/361 (51%), Gaps = 60/361 (16%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
+ A+ G Y G+Q N+G+KTIE ++ ALF+AG + E ++ Q I +
Sbjct: 74 GLWVAFCGKNYCGMQM----------NEGVKTIEAELERALFEAGGIAESNYGYLQKIGW 123
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEA----INEHLPEQIRILSIKRVTKGFNSKNNC 117
RAARTDKGV A Q+++ KL + ++ LPE IR++ + VTK FN+K C
Sbjct: 124 SRAARTDKGVHAAGQLLTAKLHVGDDIAGFMAKVDAALPEDIRVMHMVTVTKNFNAKMTC 183
Query: 118 NARTYSYTCPTYAFAT--------------------PQDTKDD----------------- 140
+ RTY Y PT+ F P + +D
Sbjct: 184 DQRTYEYLAPTFIFGKRMRSSASKNEEKQAEGTNQWPSNLRDSEEGFDSNVVIDNTTLEA 243
Query: 141 ---FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLE 197
FRL+ + L A LKQY GTHNFHNFTSK +P +P +R+I+SF+ E+PFV++ +E
Sbjct: 244 HKAFRLSDEILEQLNATLKQYVGTHNFHNFTSKMEPTNPQANRFIISFEAERPFVQNDME 303
Query: 198 LITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQV 257
+ L++ GQSF+LH IRKM+G A+ + G + IE+ L + DLP AP +GL L Q
Sbjct: 304 WVRLRVVGQSFLLHHIRKMIGTAVEVVSGVSDPSTIERAMELTKMDLPKAPSVGLYLAQA 363
Query: 258 HYDLYNQKYGQDGM---HESLHFHE--VDKEVNEFRHKFILPYLVKTEITEKPMLAWLEL 312
H+++YN K +D + H L E V V +F+ I +++K E + WL
Sbjct: 364 HFEVYNMKM-EDTIQTSHPPLDLKEPSVAAAVEQFKRDVIYDHIMKHEERTRTYAKWLRT 422
Query: 313 L 313
+
Sbjct: 423 M 423
>gi|328876653|gb|EGG25016.1| tRNA pseudouridylate synthase [Dictyostelium fasciculatum]
Length = 542
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 120/331 (36%), Positives = 184/331 (55%), Gaps = 33/331 (9%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A YSG Y G+Q +N G TIE ++ +A FK G ++ ++F + + I
Sbjct: 118 IAFCVGYSGTNYCGMQ----------KNWGYSTIEEELEKACFKTGSISPNNFYSQRKID 167
Query: 61 FQRAARTDKGVSALKQIVSLKLPE-----EANKEAINEHLPEQIRILSIKRVTKGFNSKN 115
+ R ARTDKGVSA++ +VS KL E K AIN HLPE I++ IKRV F++KN
Sbjct: 168 WIRCARTDKGVSAVRNMVSCKLEYDPPTLEELKNAINSHLPEDIKVFGIKRVNNSFHAKN 227
Query: 116 NCNARTYSYTCPTYAFATPQDTK---DDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRK 172
+ R+Y Y PT+AF T + ++ + + + ++L + GTH FHN+TS++
Sbjct: 228 CVDGRSYLYITPTFAFEPVHATSGRPETYKFDETERSRVNSMLAMFLGTHKFHNYTSRKD 287
Query: 173 PLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIA-RGF---- 227
DPS R + F C +PFV +G+E +++ I G SFMLHQIRKM+G M++ RGF
Sbjct: 288 SGDPSAKRTMSLFQCSEPFVMEGIEFVSINIIGGSFMLHQIRKMIGFVMSVMRRGFFWEK 347
Query: 228 --------TSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHE 279
+ +I T QF+LPMAPG GL+L+ +D++ +K+ +H L F E
Sbjct: 348 NNDTESLDYVRKIITATLCHRQFNLPMAPGTGLMLDACLFDVWTKKFK--SVHGDLEFSE 405
Query: 280 VDKEVNEFRHKFILPYLVKTEITEKPMLAWL 310
+E+ +F+ + I +V E +K W+
Sbjct: 406 AKEEMEQFKKEKIFKQIVLLEKEKKEFTNWI 436
>gi|303288890|ref|XP_003063733.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454801|gb|EEH52106.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 313
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 121/322 (37%), Positives = 173/322 (53%), Gaps = 23/322 (7%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G+Q RN G TIE ++ +A+ AG +++ + +Q
Sbjct: 4 VAIFLAYVGKGYQGMQ----------RNPGAVTIEDELEKAIVAAGGISDLNAGDFAKVQ 53
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK--EAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ RAARTDKGVSA+ Q VSL++ + + +N LPE +RVT GFN+K C+
Sbjct: 54 WMRAARTDKGVSAVGQCVSLRMVIDPPGVIDRVNAALPEGFEFFGYERVTGGFNAKTMCD 113
Query: 119 ARTYSYTCPTYAFATPQDTKDD----FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
R Y Y P AF DD F + +L Y GTHNFHNFT + P
Sbjct: 114 RRRYEYVVPVKAFDPRAKNSDDASPPFEFDETMRQRVNKILGNYVGTHNFHNFTVRVSPD 173
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+PS RYI+SFDC PFV DG+ + + GQSFMLHQIRK++G+ + + RG S++ +
Sbjct: 174 EPSAMRYIISFDCSAPFVVDGVAFVRCVVVGQSFMLHQIRKLIGMMLGVIRGAWSEE--D 231
Query: 235 KTFGLD---QFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKF 291
+ F L+ ++PMAP LGL L + Y YN +Y H L +V F+
Sbjct: 232 QLFALNTKESVNVPMAPELGLFLCECIYHAYNVRYAS--THPPLSLENHRDKVETFKRVH 289
Query: 292 ILPYLVKTEITEKPMLAWLELL 313
I P++ +TE E+ M W+ +L
Sbjct: 290 IYPHMARTETEEQTMENWIRML 311
>gi|384253414|gb|EIE26889.1| pseudouridine synthase, partial [Coccomyxa subellipsoidea C-169]
Length = 314
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 119/325 (36%), Positives = 176/325 (54%), Gaps = 30/325 (9%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ A+ G GY G+Q N G KTIEG++ A+ KAG +++++ +Q
Sbjct: 5 VAVFVAFVGAGYSGMQ----------HNPGCKTIEGELGSAMNKAGAISDENAGDFSKVQ 54
Query: 61 FQRAARTDKGVSALKQIVSLKL----PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ RAARTDKGVSA +VSLK+ P+ E IN HLPEQIR+L RVT F+++ +
Sbjct: 55 WNRAARTDKGVSAAGNVVSLKMMIAFPDTV--ERINSHLPEQIRVLGFTRVTNSFDARKH 112
Query: 117 CNARTYSYTCPTY--------AFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFT 168
C+ R Y Y P + A A R + +Q L +L +EGTH+FHN+T
Sbjct: 113 CDRRRYEYILPAFITIDGAAAAAAAEAAGSRQCRFSAEQQARLNEVLGAFEGTHSFHNYT 172
Query: 169 SKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFT 228
+ DP+ RYI+SF C +G + + + + GQSFMLHQIRK+VG A+A+ RG
Sbjct: 173 VRVPASDPAAKRYILSFKCAGTMNLEGQQWVRMVVVGQSFMLHQIRKLVGTAVAVMRGVA 232
Query: 229 SKDLIEKTFGLDQFDL---PMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVN 285
+ D I T LD + PMAP LGL L++ ++ YN ++G D + +V+
Sbjct: 233 TPDAI--TLALDPARVVVTPMAPELGLFLDECVFESYNDRWGND-REACVRLAAFQDQVD 289
Query: 286 EFRHKFILPYLVKTEITEKPMLAWL 310
F+ + I P++ + AWL
Sbjct: 290 AFKRERIYPHIASYDAKNGTNAAWL 314
>gi|330793042|ref|XP_003284595.1| hypothetical protein DICPUDRAFT_45589 [Dictyostelium purpureum]
gi|325085509|gb|EGC38915.1| hypothetical protein DICPUDRAFT_45589 [Dictyostelium purpureum]
Length = 473
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 122/336 (36%), Positives = 184/336 (54%), Gaps = 36/336 (10%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ Y G Y G+Q +N G++TIE ++ A+FKAG + D+ I
Sbjct: 70 VAVLLGYLGKNYAGMQ----------KNPGLRTIEEELEMAIFKAGGILPDNLYFQHKID 119
Query: 61 FQRAARTDKGVSALKQIVSLKL---PEEANK--EAINEHLPEQIRILSIKRVTKGFNSKN 115
+ R ARTDKGVSAL+ +VSLK+ P E ++ +A+N+ LPE I + I RV F++KN
Sbjct: 120 WVRCARTDKGVSALRNVVSLKMEVGPPELDEMVKALNKLLPEDIHVFKIMRVNNSFHAKN 179
Query: 116 NCNARTYSYTCPTYAFATPQDTK---DDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRK 172
+AR+Y Y CPT AF T + F+ T + L +L Y G H FHN+TS+++
Sbjct: 180 GVDARSYVYVCPTSAFEPKFATNKLVEPFKFTEETRETLNRVLSYYLGNHRFHNYTSRKE 239
Query: 173 PLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKD- 231
D S R I+ F+C PF+ +G+E++++ + G+SFMLHQIRKM+G M+ R +D
Sbjct: 240 SNDVSVFRKIIKFECSVPFILEGVEMVSINVIGESFMLHQIRKMIGCLMSFMRKGIFQDA 299
Query: 232 ------------LIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHE 279
IE TF +LP+APG GLLL+ + ++N+KY +H L
Sbjct: 300 QDKESAFDQIRKYIEATFYHQPLNLPVAPGAGLLLDHCIFRMWNEKY--KDIHGELMVEN 357
Query: 280 VDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLAD 315
D V +FR K + + E T++ W+E D
Sbjct: 358 DD--VEQFR-KVVFGEIASLEATKREFSEWIETKLD 390
>gi|296412959|ref|XP_002836186.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629994|emb|CAZ80377.1| unnamed protein product [Tuber melanosporum]
Length = 454
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 128/364 (35%), Positives = 190/364 (52%), Gaps = 27/364 (7%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ Y G GY G+Q N K+IE D+ EA +AG +++ + + P+
Sbjct: 93 VAVLIGYCGTGYRGMQ----------LNPPHKSIESDLFEAFVQAGAISKANSDDPKKSS 142
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK--EAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A ++SLKL E E IN +LPEQIR+ I R F+S + C+
Sbjct: 143 LVRCARTDKGVHAAGNVISLKLIIEDPDITEKINSYLPEQIRVWGIVRTVGSFSSYHQCD 202
Query: 119 ARTYSYTCPTYAFATPQD----TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
+R Y Y P++ F P K +R++P + ++ + YEGTHNFHNFT ++
Sbjct: 203 SRRYEYLVPSHCFIPPHPKSYLAKKTYRISPKRLQRVREGFRSYEGTHNFHNFTIQKTFN 262
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
DPS R+I SF+ P + + E ++L++ GQSFM+HQIRKMVG+ M + R + I+
Sbjct: 263 DPSSKRFIKSFEVLDPIIINNTEWLSLRVHGQSFMMHQIRKMVGMVMMVVRTGCPLERIK 322
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+ G +P AP LGLLLE +D YN+K +D E + F + KE+ FR K I
Sbjct: 323 EACGPRVVSIPKAPSLGLLLESPVFDAYNRKAERDFQKEPIDFSKYAKEIGAFRDKMIYT 382
Query: 295 YLVKTEITEKPMLAWLELLADHS-----FETRAAKAALAAANGEE------LQEVTDGEE 343
L + E ++ + + T A AL GEE LQ + D E
Sbjct: 383 KLFEEEERAHVFTQFVHFIDSFKSPLFHYLTSAGLKALDGVGGEEGAKTVDLQLLPDNES 442
Query: 344 EEDE 347
E+++
Sbjct: 443 EDED 446
>gi|308813608|ref|XP_003084110.1| tRNA pseudouridylate synthase (ISS) [Ostreococcus tauri]
gi|116055993|emb|CAL58526.1| tRNA pseudouridylate synthase (ISS) [Ostreococcus tauri]
Length = 450
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/317 (36%), Positives = 172/317 (54%), Gaps = 30/317 (9%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A+ FAY G GY G+Q RN G++TIEG++ A+ +AG +++ + +Q+
Sbjct: 45 ALTFAYVGAGYAGMQ----------RNPGVRTIEGELEGAIARAGGISDANAGDFAKVQW 94
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANK--EAINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
RAARTDKGVSA+ Q+++LK+ E + INE LPE+ + I RVT G
Sbjct: 95 TRAARTDKGVSAVGQVIALKMVMEPDGMLARINEALPERFEVFGIDRVTGG--------- 145
Query: 120 RTYSYTCPTYAFA----TPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
Y Y PT+AF K+ F T + ++ +L Y GTHNFHN+T K KP D
Sbjct: 146 --YEYVIPTWAFDPNLFVEGAEKEKFTFTEETRRRVERVLGNYCGTHNFHNYTVKVKPTD 203
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
RYI+SF+C QPF DG E + ++ GQSFMLHQIRK++G +A+ RG +D +
Sbjct: 204 AQAKRYILSFECSQPFEVDGEEFVRCEVVGQSFMLHQIRKLIGTMLAVMRGTLDEDDQKF 263
Query: 236 TFGLDQF-DLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
QF PMAP LGL L + Y YN K+G +H++ + + F+ +
Sbjct: 264 AILSHQFVPTPMAPELGLFLCECIYKAYNDKFGS--VHDNFELEKYRDKSEAFKRAHVYT 321
Query: 295 YLVKTEITEKPMLAWLE 311
++ + E + + W++
Sbjct: 322 HIARQEREQSTLRNWIK 338
>gi|405973228|gb|EKC37952.1| tRNA pseudouridine synthase A [Crassostrea gigas]
Length = 412
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 115/327 (35%), Positives = 179/327 (54%), Gaps = 75/327 (22%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQ--- 57
+A++ AY+G GY G+Q RN +IE +I++AL + +T++ ++ P
Sbjct: 46 VAVLIAYNGKGYHGIQ----------RNPPFPSIEEEILKALLEVKAITQEQYDKPSLVS 95
Query: 58 -NIQFQRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQRAARTDK VSA + KR TKGF+ K
Sbjct: 96 TQVSFQRAARTDKHVSAAR----------------------------FKRTTKGFDCKTQ 127
Query: 117 CNARTYSYTCPTYAFATPQDT-KDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
C RTY Y PTYA A + T D++R+T F L+ +
Sbjct: 128 CTGRTYMYVLPTYALAPVEMTVTDNYRVTGPNFTKLEWM--------------------- 166
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
C +PFV++GLE +T K++GQSFMLH IRKM+G+ +A+ +G+ +D IE
Sbjct: 167 -----------CGKPFVREGLEFVTCKVRGQSFMLHHIRKMIGLMIAVVKGYCKEDAIEL 215
Query: 236 TFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPY 295
++G ++ D+P APGLGLLL+++++D YN+K+G+DG+HE + + E ++E+ +FR ++ILP
Sbjct: 216 SWGSEKVDVPKAPGLGLLLDELYFDGYNKKWGRDGLHEPIEWSEFEEELEKFREEYILPE 275
Query: 296 LVKTEITEKPMLAWLELLADHSFETRA 322
+ K E E+ M WL+ L HSF+ +
Sbjct: 276 IYKGEKNERVMWDWLKTLHMHSFDVES 302
>gi|357626173|gb|EHJ76355.1| hypothetical protein KGM_22659 [Danaus plexippus]
Length = 290
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 104/260 (40%), Positives = 150/260 (57%), Gaps = 55/260 (21%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
MAM+ Y GV Y+G+Q RN G+ TIE D+++AL++A ++TED FN QN Q
Sbjct: 78 MAMLLGYCGVDYYGMQ----------RNPGVPTIEEDLLKALYEAKYITEDDFNNQQNAQ 127
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNAR 120
FQR++RTDKGVSA +Q+V
Sbjct: 128 FQRSSRTDKGVSAARQVV------------------------------------------ 145
Query: 121 TYSYTCPTYAFAT---PQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPS 177
TYSYT PTY F + +D + +R+T + + + +L Y+GT ++HNFT K+ DPS
Sbjct: 146 TYSYTLPTYVFESNVASEDERKAYRITSQKIDQVNEVLGYYKGTKSYHNFTEKKHFQDPS 205
Query: 178 CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTF 237
RY+MSF E+ F++ +E L +KGQSFMLHQIRKM+G+ +A+ RG T +EK+F
Sbjct: 206 SLRYMMSFVLERVFMESEMEFAELLVKGQSFMLHQIRKMIGLMIAVVRGHTDISTLEKSF 265
Query: 238 GLDQFDLPMAPGLGLLLEQV 257
G ++ +P APGLGL+L++V
Sbjct: 266 GKEKVMIPTAPGLGLVLDKV 285
>gi|328771895|gb|EGF81934.1| hypothetical protein BATDEDRAFT_87010 [Batrachochytrium
dendrobatidis JAM81]
Length = 491
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 118/354 (33%), Positives = 183/354 (51%), Gaps = 62/354 (17%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ ++ +Y G GY G+Q N + +IE D+ +AL +G I
Sbjct: 101 VVLLMSYCGTGYQGMQI----------NPDVPSIELDLHKALAASG-----------AIA 139
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK--EAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F R ARTDKGV A Q+VSLK+ + + E IN LP QIR+ RV + F++K++C+
Sbjct: 140 FMRCARTDKGVHAGGQVVSLKMIIQDSDIIERINARLPPQIRVWGYARVQQQFHAKHHCD 199
Query: 119 ARTYSYTCPTYAFA--------------------------------TPQDTKDD------ 140
+R Y Y PT P+ T ++
Sbjct: 200 SRIYEYILPTSVLKKVDPTYYPLSKIGVAAGVTFENMGRAKMEPIEIPEHTDNEKETIQG 259
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELIT 200
+R + +A+L +Y GTHN+HNFT RK D S RYI+SF C +PF +D E ++
Sbjct: 260 YRTNHQELEEFRAILNEYVGTHNYHNFTIGRKFEDKSSIRYIISFICSEPFQRDNTEWVS 319
Query: 201 LKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYD 260
LK+KGQSFMLHQIRKM+G+A+ + R T K+LI TF + ++P AP LGLLLE+ ++
Sbjct: 320 LKVKGQSFMLHQIRKMIGLAVMMMRTSTPKNLIASTFSQTRINIPKAPALGLLLERPLFE 379
Query: 261 LYNQKYGQDGM-HESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELL 313
YN + G+ + + F + + +++F+ +I ++ EI++ L W ++
Sbjct: 380 NYNSQIQPKGVDRDVIDFDQYKELIDQFKEDWIYKAQIQEEISKGHFLEWTRVV 433
>gi|66803188|ref|XP_635437.1| tRNA pseudouridylate synthase [Dictyostelium discoideum AX4]
gi|60463746|gb|EAL61924.1| tRNA pseudouridylate synthase [Dictyostelium discoideum AX4]
Length = 596
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 120/346 (34%), Positives = 184/346 (53%), Gaps = 50/346 (14%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ YSG Y G+Q +N G+KT+E ++ ALF+ G ++ D+ Q +
Sbjct: 142 VAIILGYSGTNYAGMQ----------KNPGLKTVEEELEHALFRTGGISPDNMYYQQKVD 191
Query: 61 FQRAARTDKGVSALKQIVSLKL----PE-EANKEAINEHLPEQIRILSIKRVTKGFNSKN 115
+ R ARTDKGVSA++ +VSLK+ P+ E K A+N+ LP+ I + I RV F++KN
Sbjct: 192 WIRCARTDKGVSAIRNVVSLKMEMGPPDFEGMKIALNKELPKDITVFHIMRVNNSFHAKN 251
Query: 116 NCNARTYSYTCPTYAF-----------------ATPQDTKDDFRLTPDQFNFLQALLKQY 158
+AR+Y Y PT+ F +T+ ++ T D + L +L Y
Sbjct: 252 AVDARSYIYVTPTHVFEPKFSKKNKSIVEEAANGGENNTQPPWKFTSDTLSILNKVLSFY 311
Query: 159 EGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVG 218
G H FHN+TS+++ D S R I SF C +PFV +G+E++++ + G+SFMLHQIRKM+G
Sbjct: 312 LGNHRFHNYTSRKESNDVSVFRKIHSFVCSEPFVLEGVEMVSINVVGESFMLHQIRKMIG 371
Query: 219 VAMAIARGFTSKDL-------------IEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQK 265
++ R +D I TF +LPMAPG GLLL+ ++ +N+
Sbjct: 372 CLISFIRKGMFEDCETRDQAFDQIKAYINSTFEHTPLNLPMAPGAGLLLDYCIFNEWNK- 430
Query: 266 YGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLE 311
+H L E D +V EF+ K I + E T+K W+E
Sbjct: 431 -NNSSIHGELKI-ESD-QVEEFK-KTIYREIALLESTKKEFKNWIE 472
>gi|343426672|emb|CBQ70201.1| related to PUS1-pseudouridine synthase 1 [Sporisorium reilianum
SRZ2]
Length = 570
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 112/320 (35%), Positives = 161/320 (50%), Gaps = 65/320 (20%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ F Y G+GY GLQ N G+KTIEGDI +A AG V+ D+ P +
Sbjct: 96 VAVKFGYCGIGYSGLQI----------NPGVKTIEGDIFQAFCTAGAVSADNAVNPNKVG 145
Query: 61 FQRAARTDKGVSALKQIVSLKL---PE-----EANKEAINEHLPEQIRILSIKRVTKGFN 112
QRAARTD+GV A ++SLKL P+ E + +N LPE IR+ + RV GF+
Sbjct: 146 LQRAARTDRGVHAAGNLLSLKLILQPDGLQEGETLVDRVNALLPEFIRVWGVTRVQNGFS 205
Query: 113 SKNNCNARTYSYTCPTYAFATPQD----------TKDD---------------------- 140
++ +C++R Y Y PTY F P+ +DD
Sbjct: 206 ARQSCDSRMYEYLLPTYVFVPPKPGSTMHDMLVRMRDDELAKTGATTLGDVVDHAFWTQH 265
Query: 141 ---------------FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSF 185
FRL ++++ +Y G+HNFHNFT ++ D SC R++
Sbjct: 266 GTTHDFSTDMRAKTAFRLPASALARIRSIFARYLGSHNFHNFTVGKEFRDRSCQRFMKQL 325
Query: 186 DCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLP 245
P V E +++K GQSFMLHQIRKM+G+ + + R + L+++ FG + +P
Sbjct: 326 TISDPTVIGDTEWVSIKFHGQSFMLHQIRKMIGLLVLVGRTGAGEGLVDECFGPARVHIP 385
Query: 246 MAPGLGLLLEQVHYDLYNQK 265
APGLGLLLEQ +D YN +
Sbjct: 386 KAPGLGLLLEQPIFDAYNTR 405
>gi|358060585|dbj|GAA93704.1| hypothetical protein E5Q_00349 [Mixia osmundae IAM 14324]
Length = 461
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 118/368 (32%), Positives = 179/368 (48%), Gaps = 61/368 (16%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ Y G GY+G Q + ++TIEG E L KAG +++D+ + +
Sbjct: 49 VALLVGYCGTGYYGSQIQ----------SELRTIEGAFFEGLVKAGCISKDNAESASKVG 98
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK--------EAINEHLPEQIRILSIKRVTKGFN 112
R ARTD GV A + SLKL + E IN HLP+ +R+ + RVT GFN
Sbjct: 99 LARTARTDAGVHAAGNLFSLKLILQPTTLASSDNIVEHINRHLPDHLRVWACPRVTGGFN 158
Query: 113 SKNNCNARTYSYTCPTYAFATPQ----------------------------DT---KDDF 141
++NC++R Y+YT PT+ F P+ DT + +
Sbjct: 159 PRSNCDSRWYNYTLPTHVFLPPKPGTPMAARMAEKPLETFWNEQNPELIFADTLPARKLW 218
Query: 142 RLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITL 201
R+TP++ + L+ L +Y G+HNF NFT + D S R + PF+ D E I++
Sbjct: 219 RITPEKLDSLRTTLARYLGSHNFWNFTVGKDFRDRSAQRVMKQVIVSDPFLIDDAEWISI 278
Query: 202 KIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDL 261
K+ GQSFMLHQIRKM+G+A+ R T L+ + FG + +P AP LGLLLE ++
Sbjct: 279 KLHGQSFMLHQIRKMIGLAILSVRTGTPSTLVLECFGPSRIAVPKAPSLGLLLEYPEFNN 338
Query: 262 YNQKYG---------QDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLEL 312
YN + + G ++L F + + +F+ + I P + E E W+
Sbjct: 339 YNSRLDGLKANRQDEESGERQALRFSDHTAVMEKFKSEQIYPKIWSKEEEEATFATWVNF 398
Query: 313 LADHSFET 320
H F T
Sbjct: 399 ---HDFVT 403
>gi|255087382|ref|XP_002505614.1| predicted protein [Micromonas sp. RCC299]
gi|226520884|gb|ACO66872.1| predicted protein [Micromonas sp. RCC299]
Length = 294
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 115/323 (35%), Positives = 162/323 (50%), Gaps = 47/323 (14%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A AY G GY G Q RN G +TIE ++ A+ AG ++ D+ +Q
Sbjct: 7 IAAFLAYVGKGYQGFQ----------RNPGARTIEDELERAIVAAGGISADNAGDFTKVQ 56
Query: 61 FQRAARTDKGVSALKQIVSLK--LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ RAARTDKGVSA+ Q ++L+ L E IN LPE +I KRVT GFN+K C+
Sbjct: 57 WTRAARTDKGVSAVGQCIALRMVLDPPGVLERINAALPEGFKIFGYKRVTGGFNAKTMCD 116
Query: 119 ARTYSYTCPTYAF----ATPQDTKDD----FRLTPDQFNFLQALLKQYEGTHNFHNFTSK 170
R Y Y PT AF P+ D F + + +L Y GTHNFHN+T +
Sbjct: 117 RRRYEYVIPTCAFDPRRCLPRREDDKEAKAFVFDEELRARVNKILGNYCGTHNFHNYTVR 176
Query: 171 RKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSK 230
P D + RYI+SF+C +PFV DG+E + + GQSFMLHQIRK++G + + RG+ ++
Sbjct: 177 VDPNDAAAMRYIISFECGEPFVIDGVEFVRTTVVGQSFMLHQIRKLIGTMLCVVRGYLAE 236
Query: 231 DLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHK 290
+ DQ ++ K + HE L E +V F+
Sbjct: 237 E--------DQ-------------------IFALKTKESCSHEPLALDEYADDVEAFKKS 269
Query: 291 FILPYLVKTEITEKPMLAWLELL 313
I P++ TE E M AW+ +L
Sbjct: 270 HIYPHMASTEKEEGTMEAWVRML 292
>gi|443897972|dbj|GAC75310.1| pseudouridylate synthase [Pseudozyma antarctica T-34]
Length = 649
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 120/393 (30%), Positives = 184/393 (46%), Gaps = 90/393 (22%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ F Y G+GY GLQ N G+KTIEGDI +A AG V++D+ P +
Sbjct: 196 VAVKFGYCGIGYSGLQI----------NPGVKTIEGDIFDAFCTAGAVSKDNAVNPNKVG 245
Query: 61 FQRAARTDKGVSALKQIVSLKL---PE-----EANKEAINEHLPEQIRILSIKRVTKGFN 112
QRAARTD+GV A ++SLKL P+ E + +N LPE IRI + RV GFN
Sbjct: 246 LQRAARTDRGVHAAGNLLSLKLILQPDGLQEGETLVDKVNSLLPEFIRIWGVTRVQNGFN 305
Query: 113 SKNNCNAR-------TYSYTCPT------------------------------------- 128
++ +C++R TY + P
Sbjct: 306 ARQSCDSRMYEYLLPTYVFIPPKPGSTMHEMLKRLRDEELAKLKESNPDAHSTSLDEVIA 365
Query: 129 ----------YAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSC 178
+ FAT K +RL + ++ + ++ G+HNFHNFT ++ D SC
Sbjct: 366 HPFWSAHGTEHDFATDVAAKKKYRLAETELERIRTIFAKFSGSHNFHNFTVGKEFRDRSC 425
Query: 179 SRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFG 238
R++ + V E +++K+ GQSFMLHQIRKMVG+ + + R L+++ FG
Sbjct: 426 QRFMKTLTISPTKVIGDCEWVSIKLHGQSFMLHQIRKMVGLLVLVGRSGAGMGLVDECFG 485
Query: 239 LDQFDLPMAPGLGLLLEQVHYDLYNQKYG------------------QDGMHESLHFHEV 280
+ +P APGLGLLLEQ ++ YN++ G QD + E + + +
Sbjct: 486 PARVHIPKAPGLGLLLEQPIFEAYNRRIGNNNDKLTRLMKKSDNPGLQDELREGVGYKDH 545
Query: 281 DKEVNEFRHKFILPYLVKTEITEKPMLAWLELL 313
++++ +F+ +I + TE WL L
Sbjct: 546 EEQMAKFKQAWIYDRITATEADTAEFAKWLNYL 578
>gi|388856578|emb|CCF49884.1| related to PUS1-pseudouridine synthase 1 [Ustilago hordei]
Length = 615
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 111/327 (33%), Positives = 158/327 (48%), Gaps = 72/327 (22%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ F Y G+GY GLQ N G+KTIEGD+ A G V+ D+ P +
Sbjct: 113 VAVKFGYCGIGYSGLQI----------NPGVKTIEGDMFAAFCNVGAVSADNAVNPNKVG 162
Query: 61 FQRAARTDKGVSALKQIVSLKL--------PEEANKEAINEHLPEQIRILSIKRVTKGFN 112
QRAARTD+GV A +VSLKL P E + +N LP+ IRI I RV FN
Sbjct: 163 LQRAARTDRGVHAAGNLVSLKLILEPCGLKPGETLVDKVNSILPDFIRIWGITRVQNAFN 222
Query: 113 SKNNCNARTYSYTCPTYAF--------------------------ATPQ----------- 135
++ +C++R Y Y PTY F + PQ
Sbjct: 223 ARQSCDSRMYEYLLPTYVFIPPKPGSSMHDMLVRMQKEQLAKLETSDPQASTTSLDPIVN 282
Query: 136 -----------------DTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSC 178
K +RL ++++ +Y G+HNFHNFT ++ D SC
Sbjct: 283 HAFWAQHGTSHDFSTDISAKKGYRLPASHLARIRSIFARYLGSHNFHNFTVGKEFRDRSC 342
Query: 179 SRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFG 238
R++ P + +E +++K GQSFMLHQIRKM+G+ + I R ++ L+E+ FG
Sbjct: 343 QRFMKELSISDPKLIQDVEWLSIKFHGQSFMLHQIRKMIGLLVLIGRTGAAQGLVEECFG 402
Query: 239 LDQFDLPMAPGLGLLLEQVHYDLYNQK 265
+ +P APGLGLLLE+ +D YN +
Sbjct: 403 PARVHIPKAPGLGLLLERPIFDAYNSR 429
>gi|71022667|ref|XP_761563.1| hypothetical protein UM05416.1 [Ustilago maydis 521]
gi|46101432|gb|EAK86665.1| hypothetical protein UM05416.1 [Ustilago maydis 521]
Length = 615
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 111/327 (33%), Positives = 162/327 (49%), Gaps = 72/327 (22%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ F Y G+GY GLQ N G+KTIEGDI +A AG V+ D+ P +
Sbjct: 123 VAVKFGYCGIGYSGLQI----------NPGVKTIEGDIFDAFCTAGAVSSDNAVNPNKVG 172
Query: 61 FQRAARTDKGVSALKQIVSLKL--------PEEANKEAINEHLPEQIRILSIKRVTKGFN 112
QRAARTD+GV A ++SLKL P E + +NE LP IRI + RV GFN
Sbjct: 173 LQRAARTDRGVHAAGNLLSLKLILQPQGLKPGETLVDKVNELLPPFIRIWGVTRVQNGFN 232
Query: 113 SKNNCNARTYSY----------------------------------------TC------ 126
++ +C++R Y Y TC
Sbjct: 233 ARQSCDSRMYEYLLPTYVFIPPKPGSTMHDMLVRIRQQELARLSESEAHVSTTCLDEIID 292
Query: 127 --------PTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSC 178
T F+ K +RLTP ++++ ++ G+HNF+NFT ++ D SC
Sbjct: 293 HPFWKSHGTTSEFSVDMAAKKQYRLTPAHLAKIRSIFNRFLGSHNFYNFTVGKEFRDRSC 352
Query: 179 SRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFG 238
R++ +P + G+E +++K GQSFMLHQIRKM+G+ + I R ++ L+++ FG
Sbjct: 353 QRFMKKLTISEPKMIQGVEWLSIKFHGQSFMLHQIRKMIGLLVLIGRTGAAERLVDECFG 412
Query: 239 LDQFDLPMAPGLGLLLEQVHYDLYNQK 265
+ +P APGLGLLLE +D YN +
Sbjct: 413 PARVHIPKAPGLGLLLEMPIFDAYNTR 439
>gi|388583219|gb|EIM23521.1| pseudouridine synthase [Wallemia sebi CBS 633.66]
Length = 531
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 104/305 (34%), Positives = 158/305 (51%), Gaps = 42/305 (13%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ + G GY G+Q + +KTIEGDI A+ KAG ++ D+ P +
Sbjct: 73 AVIIGFCGTGYNGMQ--------IQPHGNVKTIEGDIFVAMIKAGVISPDNSTDPGKVNL 124
Query: 62 QRAARTDKGVSALKQIVSLK----LPEEAN-KEAINEHLPEQIRILSIKRVTKGFNSKNN 116
QRAARTD V A ++SLK LP+ + E INEHLP IRI R F+++ +
Sbjct: 125 QRAARTDASVHAAFNVISLKMIVDLPDTPDIVEKINEHLPNHIRIWGFVRTQNSFDARTS 184
Query: 117 CNARTYSYTCPTYAFATPQ-------------------DTKDD----------FRLTPDQ 147
C++R+Y Y P+Y F P D +D +R+ D
Sbjct: 185 CDSRSYEYLLPSYVFIPPSPWSNLGKRLKSSHPFWEGVDETEDIASMMTRKRAYRIDSDT 244
Query: 148 FNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQS 207
+ + L Q+EG+HNF ++T + D S R++ + PF+ +G E I+++ GQS
Sbjct: 245 LDRARETLAQFEGSHNFWSYTIGKGFRDRSSQRFMKKLTIQDPFLVEGNEWISVRFYGQS 304
Query: 208 FMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYG 267
FMLHQIRKM+ + + + R T LI T+ +P APGLGLLLE+ H+++YN +
Sbjct: 305 FMLHQIRKMIFMLVNVVRTGTPASLIPTTYTDLPIVVPKAPGLGLLLEKPHFNVYNSRVK 364
Query: 268 QDGMH 272
++ H
Sbjct: 365 ENNEH 369
>gi|424512964|emb|CCO66548.1| predicted protein [Bathycoccus prasinos]
Length = 620
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 117/367 (31%), Positives = 176/367 (47%), Gaps = 71/367 (19%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ F Y+G GY G+Q RN G KTIE D+ A+ KAG + E + +
Sbjct: 108 IALFFGYNGDGYQGMQ----------RNPGAKTIEDDLESAIVKAGGIAESNSGDFNKVH 157
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAI----NEHLPE-QIRILSIKRVTKGFNS 113
+ RAARTDKGVSA+ Q+VS K ++ N E I NEHLP +I RVT GF++
Sbjct: 158 WNRAARTDKGVSAVGQVVSFKCMNADDGNTETIVRLINEHLPRGKIVAFGATRVTGGFSA 217
Query: 114 KNNCNARTYSYTCPTYAF---------ATPQDTKDD------------------------ 140
KN C+ R Y Y P F P D D+
Sbjct: 218 KNQCDRRKYEYVVPVRTFDRRFPKKRKRNPVDGDDENGHDEKKNDENAPNGEGLEDEKED 277
Query: 141 -------------FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDC 187
+ T ++ + +LK + GTHNFHN+++K P R+++SF C
Sbjct: 278 DEENNDTQEEEEPYVFTEEERTKVNDILKHFVGTHNFHNYSTKVDCDTPQARRFVISFSC 337
Query: 188 EQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGL---DQFDL 244
PF G + + +I GQSF+ + IRK+VG+ +A+AR F D+ + F L + +
Sbjct: 338 SMPFKIQGEDFVKFEILGQSFLFNMIRKLVGMTVAVARDFC--DVSDLLFALRTKQRVNT 395
Query: 245 PMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE-ITE 303
PMAP LGL L + YD YN+++ + E L +V+ F+H+ + ++ E + +
Sbjct: 396 PMAPELGLFLCECQYDAYNKRFSAE--REPLRLENWRDKVDAFKHQTVYQHIYDREYVMK 453
Query: 304 KPMLAWL 310
M W+
Sbjct: 454 DNMGEWI 460
>gi|452820462|gb|EME27504.1| tRNA pseudouridine synthase A [Galdieria sulphuraria]
Length = 943
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 106/330 (32%), Positives = 171/330 (51%), Gaps = 27/330 (8%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ Y G Y G+Q RN G +IEG++ +AL G + + + I++
Sbjct: 88 AIVIGYLGAAYQGMQ----------RNPGAVSIEGELEKALVATGLIPNNLEGNLRKIEW 137
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEA-------INEHLPEQIRILSIKRVTKGFNSK 114
RAARTDKGVSA Q+VS L + + E +N+ LP IRIL + V+ GF++K
Sbjct: 138 SRAARTDKGVSAAGQVVSTYLLVDKDFEREQDILKRVNDTLPTDIRILGVYSVSGGFHAK 197
Query: 115 NNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQA-------LLKQYEGTHNFHNF 167
N C+ R YSY P++ + + D N ++A LLK + GTH+FHNF
Sbjct: 198 NACDRRRYSYMFPSWTLCRSKQEHEKMLKDSDYKNIMKAKVDDLNDLLKYFIGTHHFHNF 257
Query: 168 TSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGF 227
T + + +C RYI+ F C PF G + + + GQSF+LHQIRKM+G+A+A+++G+
Sbjct: 258 TVGQTSSNGTCQRYILEFFCSLPFFIGGESFLNVTVVGQSFLLHQIRKMIGLAIAVSKGW 317
Query: 228 TSKDLIEKTFGL-DQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESL--HFHEVDKEV 284
K+ + + + PMAP LGL L++ ++ YN++ ++ + +
Sbjct: 318 IPKEAFNVSLSKHHRLETPMAPSLGLFLDECLFERYNERILKNHSDSPAVEELARIRQRA 377
Query: 285 NEFRHKFILPYLVKTEITEKPMLAWLELLA 314
F+ + I Y+ E M W+ L++
Sbjct: 378 ELFKRQIIYEYIACQEREHHVMERWMFLVS 407
>gi|393226898|gb|EJD34606.1| pseudouridine synthase [Auricularia delicata TFB-10046 SS5]
Length = 531
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 112/366 (30%), Positives = 176/366 (48%), Gaps = 58/366 (15%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ + G G+ G+Q + R +TIEG++ AL KAG ++ED+ + P Q
Sbjct: 106 ALLLGFCGTGFNGMQRQ-------ARQLNARTIEGELFAALVKAGAISEDNADDPSKSQL 158
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANK-----EAINEHLPEQIRILSIKRVTKGFNSKNN 116
QR+ARTD GV A +VS+KL E IN+ LP IR+ SI RV F+++ +
Sbjct: 159 QRSARTDSGVHAAGNVVSIKLITEVPGVPDLVAHINDLLPPSIRLWSIVRVQNSFSARTS 218
Query: 117 CNARTYSYTCPTYAFATPQD--------------------------------------TK 138
C++R Y+Y P++ P+ K
Sbjct: 219 CDSRKYTYVFPSHILLPPKPGSPLHSHLKSSPGVSDAVVNHPFWAEVGAELSPEEERRRK 278
Query: 139 DDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLEL 198
+R+ P + +A L +Y GTHNFHNFT +++ D + SR+I + + P +DG+E
Sbjct: 279 QRWRVGPAALDAFRAALAEYHGTHNFHNFTVQKEFDDVTTSRFIKTTEVPAPLERDGIEW 338
Query: 199 ITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVH 258
I++ GQSFMLHQ RKM+ A+ +AR T L+ + +G + +P AP LGLLLE
Sbjct: 339 ISVLFHGQSFMLHQ-RKMISAALLLARTGTPPSLMNELYGPPKVHIPKAPALGLLLEYPL 397
Query: 259 YDLYNQKYG-------QDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLE 311
++ YN K + E + F + ++EF+ I + E WL
Sbjct: 398 FESYNTKIEATVHSSIESERREPIDFAPLSARMDEFKEAKIYSEIRAREAELNIFEVWLR 457
Query: 312 LLADHS 317
+ ++S
Sbjct: 458 SIDNYS 463
>gi|407039158|gb|EKE39487.1| tRNA pseudouridine synthase, putative [Entamoeba nuttalli P19]
Length = 403
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 122/369 (33%), Positives = 196/369 (53%), Gaps = 30/369 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++F+Y G GYFGL YL N KTIEG+I A++KA ++ED+ + + +
Sbjct: 45 VAVIFSYVGRGYFGLM--YL-------NNNPKTIEGEIENAMYKAKCISEDNKHDLKKVG 95
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK-EAINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
+ R ARTDKGVSA ++SLK+ + N E IN LPE IRI + +V+ FN+K ++
Sbjct: 96 WSRCARTDKGVSAANNLISLKMGLDGNYIERINSFLPETIRIQDVVKVSHSFNAKTRVDS 155
Query: 120 RTYSYTCPTYAFATPQDTKDDFRL--TPDQ--FNFLQALLKQYEGTHNFHNF---TSKRK 172
RTY Y P+YA + + P Q ++ +++ Y THNF N+ T + K
Sbjct: 156 RTYEYIFPSYAIQKIDSEHPEINVEYNPQQEDIDYFNSVISNYVKTHNFQNYTFNTKETK 215
Query: 173 PLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTS--- 229
S +RYI+S Q ++GL +IT+ I GQSFML QIR+M+G A+ +
Sbjct: 216 ADSKSNNRYIISMSA-QLVQRNGLNVITVSIHGQSFMLWQIRRMIGFAIVLTNFRLPIEQ 274
Query: 230 -KDLIEKTFGLDQFD--LPMAPGLGLLLEQVHYDLYNQKYGQDGMHES---LHFHEVDKE 283
++++ +F L + +P AP GL L+Q H+ +N++ +D + S ++ E K+
Sbjct: 275 MNEIMKTSFTLINWRSVIPTAPAHGLFLDQCHFGNHNERLQRDTSNSSKTNINSEETLKK 334
Query: 284 VNEFRHKFILPYLVKTEITEKPMLAWL--ELLADHSFETRAAKAALAAANGEELQEV-TD 340
EF+ K+I ++ E E+P ++ E+ + ++ K L N + T
Sbjct: 335 CMEFKEKYIWTDIINFEKEEQPFAKYMKEEVNYNKIYDVLTGKVTLEYYNSIHKSSIQTL 394
Query: 341 GEEEEDEED 349
EEE EE+
Sbjct: 395 SPEEEQEEN 403
>gi|50303379|ref|XP_451631.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74637053|sp|Q6CWQ8.1|PUS1_KLULA RecName: Full=tRNA pseudouridine synthase 1; AltName: Full=tRNA
pseudouridylate synthase 1; AltName: Full=tRNA-uridine
isomerase 1
gi|49640763|emb|CAH02024.1| KLLA0B02244p [Kluyveromyces lactis]
Length = 553
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 142/459 (30%), Positives = 211/459 (45%), Gaps = 115/459 (25%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M Y G GY G+Q N TIE ++ EA +AG +++ + +
Sbjct: 101 VAVMIGYCGTGYHGMQY----------NPPNDTIEKELFEAFVRAGAISKANSTDLKKNG 150
Query: 61 FQRAARTDKGVSALKQIVSLKL----PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
FQRAARTDKGV A ++SLKL PE KE IN LP+QIR+ I RV K F+ +
Sbjct: 151 FQRAARTDKGVHAGGNVISLKLIIEDPEV--KEKINNELPDQIRVWDISRVNKAFDCRKM 208
Query: 117 CNAR-------TYSYTCP---TY------------------------------------- 129
C++R TYS P TY
Sbjct: 209 CSSRWYEYLLPTYSLIGPKPSTYLYNEIEASKKEIPNVIQDDVESAQFWEAFSTEAESKF 268
Query: 130 ---------AFATPQDTKDD---------------------FRLTPDQFNFLQALLKQYE 159
AF P+D+ D+ +R++ ++ + ++ LKQYE
Sbjct: 269 TKEELEEIAAFVMPKDSFDENNETYQKSKAFKKLEAEHKRAYRISKERLDRFRSALKQYE 328
Query: 160 GTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV--KDGLELITLKIKGQSFMLHQIRKMV 217
GT NFHNFT + DPS R++ +PFV + E +++KI GQSFMLHQIRKM+
Sbjct: 329 GTFNFHNFTLGKDFNDPSAKRFMKQITVSEPFVIGEAKTEWVSIKIHGQSFMLHQIRKMI 388
Query: 218 GVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHF 277
+A I R F+ + I + +G ++ ++P AP LGLLLE YD YN + + G ++ + F
Sbjct: 389 SMATLITRCFSPLERIRQAYGQEKINIPKAPALGLLLEAPVYDGYNTRLQEFG-YDPIDF 447
Query: 278 HEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLA--DHSFETRAAKAALAAANGEEL 335
+ E++ F+ K I + E+ E A+ + + S+ + L G+EL
Sbjct: 448 SKYQSEMDTFKMKHIYDKIYLEEVNENVFNAFFSYIDTFNPSYNISQEQQQL---KGQEL 504
Query: 336 QEVTDGEE--EEDEEDRGGVRHSNGTSLAPK-PTPAVEK 371
Q+ + E ED E + AP PTP+ EK
Sbjct: 505 QQPSQAVELVTEDLEQK-----------APSDPTPSDEK 532
>gi|392574501|gb|EIW67637.1| hypothetical protein TREMEDRAFT_14084, partial [Tremella
mesenterica DSM 1558]
Length = 433
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 110/372 (29%), Positives = 173/372 (46%), Gaps = 72/372 (19%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ Y G GY G+Q + +TIEG++ +AL KAG V+ D+ N + +
Sbjct: 11 VALLIGYCGTGYSGMQ---------IQPGEAETIEGELFQALVKAGAVSSDNSNDHRKVD 61
Query: 61 FQRAARTDKGVSALKQIVSLKL-------PE-EANKEAINEHLPEQIRILSIKRVTKGFN 112
QRAARTD GV A VSLK+ PE E K +N +LP+QIR+ R K F+
Sbjct: 62 VQRAARTDAGVHAAGNCVSLKMIINPVLPPEHETLKSLVNSYLPKQIRMWGFVRCIKSFD 121
Query: 113 SKNNCNARTYSYTCPTYAFATPQ------------------------------------- 135
++ +C++R Y Y P+Y P
Sbjct: 122 ARTSCDSRIYEYLLPSYCLLPPTASSSLAKQLDSSSPGWREGLGPGTEFVNAAPPLVEVD 181
Query: 136 ---------------DTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSR 180
+ + ++R+ + L+ Y G+HNFHN+T R D + R
Sbjct: 182 ESAVTTDTPARRGEYERRRNWRVDEGTMGRFRGLMSMYLGSHNFHNYTVGRPFHDRAVKR 241
Query: 181 YIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD 240
+++ D P V +E I+++I GQSFMLHQIRKM+ +A+ R T +I +T+G
Sbjct: 242 HMIQIDVLDPKVYGEIEWISVQIHGQSFMLHQIRKMISMAVLACRTGTPAKIISETYGSK 301
Query: 241 QFDLPMAPGLGLLLEQVHYDLYNQKYGQDGM---HESLHFHEVDKEVNEFRHKFILPYLV 297
+ +P AP LGLLLE + YN++ ++ HE + + +E+ F+ K+I L
Sbjct: 302 RIHIPKAPPLGLLLEAPQFKTYNKRIRENSHQYDHEPVDYTSYAEEIMAFKVKYIYERLR 361
Query: 298 KTEITEKPMLAW 309
+ E+ W
Sbjct: 362 QEELERHVFQKW 373
>gi|67481869|ref|XP_656284.1| tRNA pseudouridine synthase [Entamoeba histolytica HM-1:IMSS]
gi|56473473|gb|EAL50898.1| tRNA pseudouridine synthase, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449702618|gb|EMD43222.1| tRNA pseudouridine synthase, putative [Entamoeba histolytica KU27]
Length = 401
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 118/368 (32%), Positives = 197/368 (53%), Gaps = 32/368 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++F+Y G GYFGL YL N KTIEG+I A++KA ++ED+ + + +
Sbjct: 43 VAVIFSYVGRGYFGLM--YL-------NNNPKTIEGEIENAMYKAKCISEDNKHDLKKVG 93
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK-EAINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
+ R ARTDKGVSA ++SLK+ + N E IN LPE IRI + +V+ FN+K ++
Sbjct: 94 WSRCARTDKGVSAANNLISLKMGLDGNYIERINSFLPETIRIQDVVKVSHSFNAKTRVDS 153
Query: 120 RTYSYTCPTYAFATPQDTKDDFRL--TPDQ--FNFLQALLKQYEGTHNFHNF---TSKRK 172
RTY Y P+YA + + P Q ++ +++ Y THNF N+ T + K
Sbjct: 154 RTYEYIFPSYAIQKIDSEHPEINVEYNPQQEDIDYFNSVISNYVKTHNFQNYTFNTKETK 213
Query: 173 PLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTS--- 229
S +RYI+S Q ++GL +I + I GQSFML QIR+M+G A+ +
Sbjct: 214 ADSKSNNRYIISMSA-QLVQRNGLNVIAVSIHGQSFMLWQIRRMIGFAIVLTNFRLPIEQ 272
Query: 230 -KDLIEKTFGLDQFD--LPMAPGLGLLLEQVHYDLYNQKYGQDGMHES---LHFHEVDKE 283
++++ +F L + +P AP GL L+Q H+ +N++ +D + S ++ E K+
Sbjct: 273 MNEIMKTSFTLINWRSVIPTAPAHGLFLDQCHFGNHNERLQRDTSNNSKTNINSEETLKK 332
Query: 284 VNEFRHKFILPYLVKTEITEKPMLAWLELLADHS--FETRAAKAALAAANG---EELQEV 338
EF+ K+I ++ E E+P +++ +++ ++ K L N +Q +
Sbjct: 333 CMEFKEKYIWNDIINFEKEEQPFAKYMKEQVNYTKIYDVLTGKVTLEYYNSIHKPSIQTL 392
Query: 339 TDGEEEED 346
+ EE+E+
Sbjct: 393 SPDEEQEE 400
>gi|167383737|ref|XP_001736651.1| tRNA pseudouridine synthase A [Entamoeba dispar SAW760]
gi|165900832|gb|EDR27064.1| tRNA pseudouridine synthase A, putative [Entamoeba dispar SAW760]
Length = 403
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 121/369 (32%), Positives = 197/369 (53%), Gaps = 33/369 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++F+Y G GYFGL YL N KTIEG+I A++KA ++ED+ + + +
Sbjct: 45 VAVIFSYVGRGYFGLM--YL-------NNNPKTIEGEIENAMYKAKCISEDNKHDLKKVG 95
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK-EAINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
+ R ARTDKGVSA ++SLK+ + N E IN LPE IRI + +V+ FN+K ++
Sbjct: 96 WSRCARTDKGVSAANNLISLKMGLDGNYIERINSFLPETIRIQDVVKVSHSFNAKTRVDS 155
Query: 120 RTYSYTCPTYAFATPQDTKDDFRL--TPDQ--FNFLQALLKQYEGTHNFHNF---TSKRK 172
RTY Y P+YA + + P Q ++ +++ Y THNF N+ T + K
Sbjct: 156 RTYEYIFPSYAIQKIDSEHPEINVEYNPQQEDVDYFNSVISNYVKTHNFQNYTFNTKETK 215
Query: 173 PLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTS--- 229
S +RYI+S Q ++GL +I + I GQSFML QIR+M+G A+ +
Sbjct: 216 ADSKSNNRYIISMSA-QLVQRNGLNVIAVSIHGQSFMLWQIRRMIGFAIVLTNFRLPIEQ 274
Query: 230 -KDLIEKTFGLDQFD--LPMAPGLGLLLEQVHYDLYNQKYGQDGMHES---LHFHEVDKE 283
++++ +F L + +P AP GL L+Q H+ +N++ +D + S ++ E K+
Sbjct: 275 MNEIMKTSFTLINWRSVIPTAPAHGLFLDQCHFGNHNERLQRDTSNTSKTNINSEETLKK 334
Query: 284 VNEFRHKFILPYLVKTEITEKPMLAWLELLADHS--FETRAAKAALAAANG---EELQEV 338
EF+ K+I ++ E E+P +++ +++ ++ K L N +Q V
Sbjct: 335 CIEFKEKYIWTDIINFEKEEQPFAKYMKEQVNYNKIYDVLTGKVTLEYYNSIHKPSMQTV 394
Query: 339 TDGEEEEDE 347
EEE+DE
Sbjct: 395 L-SEEEQDE 402
>gi|428184744|gb|EKX53598.1| hypothetical protein GUITHDRAFT_132703 [Guillardia theta CCMP2712]
Length = 355
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 107/305 (35%), Positives = 160/305 (52%), Gaps = 29/305 (9%)
Query: 27 RNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKL---P 83
RN G TIEG++ AL + F+++ +F + + + RAARTDKGV AL +V LKL P
Sbjct: 48 RNPGQSTIEGELERALHDSKFISDLNFGHQKKVHWNRAARTDKGVHALGNVVGLKLLINP 107
Query: 84 EEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFAT---------- 133
+ E +N+HLP IR+L IKRVTK F+++ N R Y Y PT+ F +
Sbjct: 108 DVDMVEEVNKHLPSDIRVLDIKRVTKSFHAQQLANGRQYHYLIPTFVFESCEAPETSELI 167
Query: 134 PQDTKDDFR--------LTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSF 185
P+ ++ + TP + +A + GTH+FHNFTS +K D RYI+SF
Sbjct: 168 PEGKTENNKNFWEGCSSYTPTEEEIAKAKDFRVTGTHSFHNFTSGKKKGDADAKRYIVSF 227
Query: 186 DCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLP 245
+ + DG E + L+++GQSF+LHQ + V M + R +L Q +P
Sbjct: 228 KVGERVIFDGYEYLELRVEGQSFLLHQCDR--DVVMEMGRTCIFDNLY---ICRVQVHIP 282
Query: 246 MAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKP 305
+ PG+GL L +V Y YN+ + H LH ++ +F+ K +LP +V E +
Sbjct: 283 LVPGVGLFLNKVLYRTYNK---SNSCHPRLHVLTRQDKIEDFKTKMMLPEIVARERDDHC 339
Query: 306 MLAWL 310
L WL
Sbjct: 340 TLKWL 344
>gi|366993178|ref|XP_003676354.1| hypothetical protein NCAS_0D04120 [Naumovozyma castellii CBS 4309]
gi|342302220|emb|CCC69993.1| hypothetical protein NCAS_0D04120 [Naumovozyma castellii CBS 4309]
Length = 391
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 112/327 (34%), Positives = 169/327 (51%), Gaps = 33/327 (10%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ ++ Y G GY+G+Q F TIE + + L G +++D+
Sbjct: 54 VGILLGYVGTGYYGMQYNTPMF---------PTIESTLFDTLVSVGCISKDNSVDFHKNG 104
Query: 61 FQRAARTDKGVSALKQIVSLKLP---EEANKEAINEHL-PEQIRILSIKRVTKGFNSKNN 116
F RA RTDKGV A+ ++S+K+ E K+ IN+ L P+ IR+ IK V K FN +
Sbjct: 105 FMRACRTDKGVHAMVNVISVKMSKYDEPHIKDMINKLLVPKGIRVWDIKMVNKRFNCRRA 164
Query: 117 CNARTYSYTCPTYAFATPQDT---------------KDDFRLTPD-QFNFLQALLKQYEG 160
++R Y Y PTY P+ +D PD + L+++L Y G
Sbjct: 165 VSSRWYEYLLPTYVLKEPRKDVLMNEGVTSIDLVYYNEDCYSVPDLRIGKLESVLNHYLG 224
Query: 161 THNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDG--LELITLKIKGQSFMLHQIRKMVG 218
T FHNFT+ ++ +D SC RY+ + PF KD E ++LKI+GQSFMLHQIRKM+
Sbjct: 225 TKRFHNFTTGKETMDSSCMRYVKNITISPPFRKDDNKTEWVSLKIQGQSFMLHQIRKMIW 284
Query: 219 VAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFH 278
+A IAR + ++K + +P AP GLLL + YN+K + G +E++ +
Sbjct: 285 LATLIARSNLQIEYVDKFLQDSRIYIPNAPATGLLLNYPEFAAYNEKLKRLG-YETIETN 343
Query: 279 EVDKEVNEFRHKFILPYLVKTEITEKP 305
+ KE+ EF+ KFI + + E TE P
Sbjct: 344 KYRKELQEFKDKFIYKRIFQQE-TETP 369
>gi|321265516|ref|XP_003197474.1| pseudouridylate synthase [Cryptococcus gattii WM276]
gi|317463954|gb|ADV25687.1| Pseudouridylate synthase, putative [Cryptococcus gattii WM276]
Length = 560
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 111/375 (29%), Positives = 178/375 (47%), Gaps = 72/375 (19%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ Y G GY G+Q ++ +TIEG+I AL KAG V+ D+ + +
Sbjct: 126 AVLIGYCGTGYQGMQ---------IQDHTDRTIEGEIFAALVKAGAVSADNAVDARKVDI 176
Query: 62 QRAARTDKGVSALKQIVSLK------LPE--EANKEAINEHLPEQIRILSIKRVTKGFNS 113
RAARTD GV A ++S+K LPE + E +N LP+QIR+ R K FN+
Sbjct: 177 ARAARTDAGVHAAGNVISIKMITEPPLPEGFKNVAEYVNTFLPDQIRMWGWVRTVKSFNA 236
Query: 114 KNNCNARTYSYTCPTYAFATPQ-------------------------------------- 135
+ ++R Y Y P+Y P
Sbjct: 237 RTAADSRIYEYLLPSYCLIPPHKDDPLAKHLDISSPDWREIVGEYPCSFADARLPMPTSD 296
Query: 136 ------------DTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIM 183
+ K +R+ N + ++ QY+GTHNF+N+T + D + R+++
Sbjct: 297 EGEVDPKVRGEYERKRKWRVDERTLNRFRDIIAQYKGTHNFYNYTVGKPFNDRAVKRFMI 356
Query: 184 SFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFD 243
+ ++P V +E I+++I GQSFMLHQIRKM+ +AM R + L+ +TFG +
Sbjct: 357 QLEVKEPKVYGEIEWISVQIHGQSFMLHQIRKMISMAMLACRTGSPPSLLPETFGPKKIH 416
Query: 244 LPMAPGLGLLLEQVHYDLYNQKYGQ--DGMHES---LHFHEVDKEVNEFRHKFILPYLVK 298
+P AP LGLLLE + +YN + Q +G+ E ++F E+ F+ K+I L K
Sbjct: 417 IPKAPPLGLLLEAPQFGVYNDRITQKLNGITEDRDPVNFGLYADEIYAFKVKWIYEMLRK 476
Query: 299 TEITEKPMLAWLELL 313
E+ + W++++
Sbjct: 477 EELEKNVFHKWIQMM 491
>gi|405123828|gb|AFR98591.1| pseudouridylate synthase [Cryptococcus neoformans var. grubii H99]
Length = 539
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 112/377 (29%), Positives = 179/377 (47%), Gaps = 76/377 (20%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ Y G GY G+Q ++ +TIEG+I AL KAG V+ D+ + +
Sbjct: 105 AVLIGYCGTGYQGMQ---------IQDHTDRTIEGEIFAALVKAGAVSADNAVDARKVDI 155
Query: 62 QRAARTDKGVSALKQIVSLK------LPE--EANKEAINEHLPEQIRILSIKRVTKGFNS 113
RAARTD GV A ++S+K LPE + E +N LP+QIR+ R K FN+
Sbjct: 156 ARAARTDAGVHAAGNVISIKMITEPPLPEGFKDVAEYVNTFLPDQIRMWGWVRTVKSFNA 215
Query: 114 KNNCNARTYSYTCPTYAFATPQDTKDD--------------------------------- 140
+ ++R Y Y P+Y P KDD
Sbjct: 216 RTAADSRIYEYLLPSYCLIPPH--KDDPLAKHLDISSPDWRDIVGEGPCSFADARLPMPT 273
Query: 141 -------------------FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRY 181
+R+ N + ++ QY+GTHNF+N+T + D + R+
Sbjct: 274 SDEGEVDPKVRGEYERKRRWRVDEKTLNRFRDIIAQYKGTHNFYNYTVGKPFNDRAVKRF 333
Query: 182 IMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQ 241
++ + ++P V +E I+++I GQSFMLHQIRKM+ +AM R + L+ +TFG +
Sbjct: 334 MIKLEVKEPKVYGEIEWISVQIHGQSFMLHQIRKMISMAMLACRTGSPPSLLPETFGPKK 393
Query: 242 FDLPMAPGLGLLLEQVHYDLYNQKYGQ--DGMHES---LHFHEVDKEVNEFRHKFILPYL 296
+P AP LGLLLE + +YN + Q +G+ E ++F ++ F+ K+I L
Sbjct: 394 IHIPKAPPLGLLLEAPQFGVYNDRITQKLNGITEDRDPVNFGLYADDIYAFKVKWIYEML 453
Query: 297 VKTEITEKPMLAWLELL 313
K E+ + W++++
Sbjct: 454 RKEELEKNVFHKWIQMM 470
>gi|395332022|gb|EJF64402.1| tRNA pseudouridine synthase [Dichomitus squalens LYAD-421 SS1]
Length = 563
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 121/385 (31%), Positives = 181/385 (47%), Gaps = 67/385 (17%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ + G GY G+Q + + ++TIEG + +AL K G V++D+ + P ++
Sbjct: 130 ALLIGFCGDGYNGMQIQP--------DPKLRTIEGVLFDALIKVGAVSKDNSDNPTKVKL 181
Query: 62 QRAARTDKGVSALKQIVSLKL-------PEEANKEAINEHLPEQIRILSIKRVTKGFNSK 114
RAARTD GV A +VS+KL P+ + INE LP +IR+ SI RV FN++
Sbjct: 182 GRAARTDAGVHAAGNVVSMKLINVIPGVPDLVAR--INEELPPEIRLWSILRVQNSFNAR 239
Query: 115 NNCNARTYSYTCPTYAF----------------------------------ATPQD---T 137
C++R Y+Y P+Y A+PQD
Sbjct: 240 TTCDSRKYTYFFPSYLMIPPKPGSGLYNTLKSQGAEPPAHPFWDRVDAEQQASPQDDLRR 299
Query: 138 KDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLE 197
K +R+ P+Q L+ ++EG+HNFHNFT R D SC R++ S + P V E
Sbjct: 300 KRAYRIAPEQLASLREAATKFEGSHNFHNFTVGRDFRDRSCQRFLRSIEILDPAVYGDTE 359
Query: 198 LITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQV 257
I + + GQSFMLHQ RKM+ + R T LIE+ +G Q +P P LGLLLE
Sbjct: 360 WIAVLLHGQSFMLHQ-RKMISALVLSCRTGTPPHLIEEMYGPRQVFIPKMPALGLLLEYP 418
Query: 258 HYDLY-------NQKYGQDG--MHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLA 308
++ Y N+K D S+ F ++++EF+ I + E
Sbjct: 419 IFESYSKRVASVNEKLRPDDPEYRPSIDFEAHREQLDEFKQNHIYSKMRSIEDQFGIFDG 478
Query: 309 WLELL---ADHSFETRAAKAALAAA 330
W+ + A H E AK + A+
Sbjct: 479 WIRSIDAYAGHDLEYLNAKGVIPAS 503
>gi|392565002|gb|EIW58179.1| tRNA pseudouridine synthase [Trametes versicolor FP-101664 SS1]
Length = 420
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 104/275 (37%), Positives = 145/275 (52%), Gaps = 41/275 (14%)
Query: 31 MKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKL----PEEA 86
++TIEG + EAL K G V+ED+ + P ++ RAARTD GV A +VS+KL P
Sbjct: 9 LRTIEGVLFEALIKVGAVSEDNSDNPTKVKLARAARTDAGVHAAGNVVSMKLINAIPGVP 68
Query: 87 NKEA-INEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAF-------------- 131
+ A INE LP +IRI SI RV FN++ C++R Y+Y P+Y
Sbjct: 69 DLVARINEELPPEIRIWSIVRVQNSFNARTTCDSRKYTYFFPSYLMIPPKPNSGLHNTLK 128
Query: 132 ------------------ATPQD---TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSK 170
ATPQD K ++R+TP+ L+ K++EG+HNFHNFT
Sbjct: 129 TQGLECASHSFWENADPTATPQDDLKRKREYRITPEPLAALREAAKKFEGSHNFHNFTVG 188
Query: 171 RKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSK 230
R D SC R++ S + P V E I + + GQSFMLHQ RKM+ + R T
Sbjct: 189 RDFRDRSCQRFLKSVEISDPAVYGDTEWIAVLLHGQSFMLHQ-RKMISALVLSCRAGTPP 247
Query: 231 DLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQK 265
LIE+ +G +P P LGLLLE ++ Y+++
Sbjct: 248 QLIEELYGPRPVFIPKMPALGLLLEYPIFESYSKR 282
>gi|410084294|ref|XP_003959724.1| hypothetical protein KAFR_0K02340 [Kazachstania africana CBS 2517]
gi|372466316|emb|CCF60589.1| hypothetical protein KAFR_0K02340 [Kazachstania africana CBS 2517]
Length = 370
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 109/316 (34%), Positives = 159/316 (50%), Gaps = 37/316 (11%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTE-DSFNTPQNI 59
+A+M Y G Y G+Q N ++TIEG + AL +AG +++ +S N +N
Sbjct: 38 VALMIGYCGDNYHGMQ----------YNADVQTIEGALFRALCQAGAISKANSTNFNKN- 86
Query: 60 QFQRAARTDKGVSALKQIVSLKLPEEAN--KEAINEHLPEQIRILSIKRVTKGFNSKNNC 117
+F R RTDKGV A+ ++SLK+ E KE +N LP I + +I+RV K FN + C
Sbjct: 87 KFMRTTRTDKGVHAVCNLISLKMIIEDPDIKERVNSFLPADITLWNIQRVNKKFNCRTAC 146
Query: 118 NARTYSYTCPTYAFATP--------------------QDTKDDFRLTPDQFNFLQALLKQ 157
+R Y Y PT+ P Q + D L+ +F + L
Sbjct: 147 ESRLYEYALPTFVLQNPPSQSILSRMLQLFGHSPIVHQYSMQDSTLSSKKFCHFEKCLSM 206
Query: 158 YEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMV 217
Y GTHNFHNFTS + + RY+ + QP++K+ LE I++K GQSFMLHQIRKMV
Sbjct: 207 YTGTHNFHNFTSNKASCADNSYRYMKAIAVSQPYLKNNLEWISIKFHGQSFMLHQIRKMV 266
Query: 218 GVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLH- 276
+A + R D K F + +P AP +GL L + YN+K G + H
Sbjct: 267 ALATIVTRYDYPCDTALKCFENKKTYIPNAPSMGLTLLSPMFSSYNRKLTSLGYNAITHE 326
Query: 277 FHEVDKEVNEFRHKFI 292
H+ ++ F++ FI
Sbjct: 327 LHQTKMKI--FKNNFI 340
>gi|58262434|ref|XP_568627.1| pseudouridylate synthase [Cryptococcus neoformans var. neoformans
JEC21]
gi|57230801|gb|AAW47110.1| pseudouridylate synthase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 560
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 109/375 (29%), Positives = 177/375 (47%), Gaps = 72/375 (19%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ Y G GY G+Q ++ +TIEG++ AL KAG V+ D+ + +
Sbjct: 126 AVLIGYCGTGYQGMQ---------IQDHTDRTIEGEVFAALVKAGAVSADNAIDARKVDI 176
Query: 62 QRAARTDKGVSALKQIVSLK------LPE--EANKEAINEHLPEQIRILSIKRVTKGFNS 113
RAARTD GV A ++S+K LPE + E +N LP+QIR+ R K FN+
Sbjct: 177 ARAARTDAGVHAAGNVISIKMITEPPLPEGFKDVAEYVNTFLPDQIRMWGWVRTVKSFNA 236
Query: 114 KNNCNARTYSYTCPTYAFATPQ-------------------------------------- 135
+ ++R Y Y P+Y P
Sbjct: 237 RTAADSRIYEYLLPSYCLIPPHKDDSLAKHLDLSSPDWREIVGEGPCSFADARLPMPTSD 296
Query: 136 ------------DTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIM 183
+ K +R+ + ++ QY+GTHNF+N+T + D + R+++
Sbjct: 297 EGEVDPKVRGEYERKRKWRVDEKTLGRFRDIIAQYKGTHNFYNYTVGKPFNDRAVKRFMI 356
Query: 184 SFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFD 243
+ ++P V +E I+++I GQSFMLHQIRKM+ +AM R + L+ +TFG +
Sbjct: 357 KLEVKEPKVYGEIEWISVQIHGQSFMLHQIRKMISMAMLACRTGSPPSLLPETFGPKKIH 416
Query: 244 LPMAPGLGLLLEQVHYDLYNQKYGQ--DGMHES---LHFHEVDKEVNEFRHKFILPYLVK 298
+P AP LGLLLE + +YN + Q +G+ E ++F E+ F+ K+I L K
Sbjct: 417 IPKAPPLGLLLEAPQFGVYNDRITQKLNGITEDRDPVNFGLYADEIYAFKVKWIYEMLRK 476
Query: 299 TEITEKPMLAWLELL 313
E+ + W++++
Sbjct: 477 EELEKNVFHKWIQMM 491
>gi|134118796|ref|XP_771901.1| hypothetical protein CNBN0810 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254505|gb|EAL17254.1| hypothetical protein CNBN0810 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 560
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 109/375 (29%), Positives = 177/375 (47%), Gaps = 72/375 (19%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ Y G GY G+Q ++ +TIEG++ AL KAG V+ D+ + +
Sbjct: 126 AVLIGYCGTGYQGMQ---------IQDHTDRTIEGEVFAALVKAGAVSADNAIDARKVDI 176
Query: 62 QRAARTDKGVSALKQIVSLK------LPE--EANKEAINEHLPEQIRILSIKRVTKGFNS 113
RAARTD GV A ++S+K LPE + E +N LP+QIR+ R K FN+
Sbjct: 177 ARAARTDAGVHAAGNVISIKMITEPPLPEGFKDVAEYVNTFLPDQIRMWGWVRTVKSFNA 236
Query: 114 KNNCNARTYSYTCPTYAFATPQ-------------------------------------- 135
+ ++R Y Y P+Y P
Sbjct: 237 RTAADSRIYEYLLPSYCLIPPHKDDSLAKHLDLSSPDWREIVGEGPCSFADARLPMPTSD 296
Query: 136 ------------DTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIM 183
+ K +R+ + ++ QY+GTHNF+N+T + D + R+++
Sbjct: 297 EGEVDPKVRGEYERKRKWRVDEKTLGRFRDIIAQYKGTHNFYNYTVGKPFNDRAVKRFMI 356
Query: 184 SFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFD 243
+ ++P V +E I+++I GQSFMLHQIRKM+ +AM R + L+ +TFG +
Sbjct: 357 KLEVKEPKVYGEIEWISVQIHGQSFMLHQIRKMISMAMLACRTGSPPSLLPETFGPKKIH 416
Query: 244 LPMAPGLGLLLEQVHYDLYNQKYGQ--DGMHES---LHFHEVDKEVNEFRHKFILPYLVK 298
+P AP LGLLLE + +YN + Q +G+ E ++F E+ F+ K+I L K
Sbjct: 417 IPKAPPLGLLLEAPQFGVYNDRITQKLNGITEDRDPVNFGLYADEIYAFKVKWIYEMLRK 476
Query: 299 TEITEKPMLAWLELL 313
E+ + W++++
Sbjct: 477 EELEKNVFHKWIQMM 491
>gi|353242840|emb|CCA74448.1| related to PUS1-pseudouridine synthase 1 [Piriformospora indica DSM
11827]
Length = 581
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 115/384 (29%), Positives = 176/384 (45%), Gaps = 84/384 (21%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
AM+ + G GY G+Q + + KTIEG + AL K G V+ED+ + +
Sbjct: 156 AMLIGFCGTGYSGMQIQ----------KDAKTIEGSLFSALVKVGAVSEDNSDDATKVNI 205
Query: 62 QRAARTDKGVSALKQIVSLKL----PEEAN-KEAINEHLPEQIRILSIKRVTKGFNSKNN 116
QRAARTD GV A + +VS+K+ P N AIN +LPE+IR+ I R FNS+
Sbjct: 206 QRAARTDAGVHAARNVVSIKIIMDVPGVPNLVAAINSNLPEEIRVWDIVRTQNSFNSRT- 264
Query: 117 CNARTYSYTCPTYAFATPQDT--------------------------------------- 137
R Y+Y PTY P+ T
Sbjct: 265 ---RKYTYFLPTYMLLPPEPTSVTATALRESSGEAYDVAEHPFWKSVANQPITPESTLFM 321
Query: 138 -KDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGL 196
+ +R+ D N +A L + GTHNF NFT R+ + + R+I + + +P +
Sbjct: 322 LRKKWRIDEDTLNRFKAALNTFIGTHNFWNFTVGREYKEAAAKRHIKTIEVSEPAIYGET 381
Query: 197 ELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQ 256
E ++++I GQSFMLHQ RKM+ +A + R L++ + + +P AP LGLLLE+
Sbjct: 382 EWVSVQIHGQSFMLHQ-RKMIALATFLTRSQGDASLVQNLYTSSRARIPKAPALGLLLEE 440
Query: 257 VHYDLYNQKY------------------GQDGMH------ESLHFHEVDKEVNEFRHKFI 292
++ YN+K +DG H E + F + E+ EF+ K+I
Sbjct: 441 PVFESYNKKIETANSKWKDAAASGSKEPDEDGEHAANFIREPVDFGKHRDEIEEFKKKYI 500
Query: 293 LPYLVKTEITEKPMLAWLELLADH 316
+ +TE + +WL + +H
Sbjct: 501 YAEMQRTEDEQGVFDSWLSSIDNH 524
>gi|440301846|gb|ELP94232.1| tRNA pseudouridine synthase A, putative [Entamoeba invadens IP1]
Length = 406
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 123/369 (33%), Positives = 190/369 (51%), Gaps = 33/369 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ +Y G GY G S YL G KTIEGD+ A++ AG ++ED+ + + +
Sbjct: 50 VALIVSYVGRGYQG--SMYL-------KNGEKTIEGDVENAIYLAGCISEDNKHDFKKVS 100
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEAN-KEAINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
+ R ARTDKGVSA I SLK+ + N E IN HLPE IR++ RV + F++ +
Sbjct: 101 WSRCARTDKGVSAANNIFSLKMGTDGNFIERINSHLPETIRVMDCVRVRRLFDAHTRVDN 160
Query: 120 RTYSYTCPTYAFAT--PQDTKDD--FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
R Y Y P+YA P D D ++ T + + ++ Y +HNF N+T K
Sbjct: 161 RNYEYVFPSYALQQLHPNDLNIDLNYKATEEDIQYFNFVIGHYIRSHNFQNYTYNTKETT 220
Query: 176 P---SCSRYIMSFDCEQPFV-KDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKD 231
P S R I+S E V ++GL+L+ + +KGQSFM++QIRKMVG A+ + SK+
Sbjct: 221 PESQSNIRNILSI--EATLVQRNGLDLVVVALKGQSFMIYQIRKMVGFALMLTNMRYSKE 278
Query: 232 LI----EKTFGLDQFD--LPMAPGLGLLLEQVHYDLYNQKYGQDGMHESL---HFHEVDK 282
++ E +F L ++ +P AP GL LE+ ++D+YN + ++L + E K
Sbjct: 279 MVDSIMETSFTLVKWRSLVPTAPPYGLFLERCNFDVYNNDIQNNIQTQNLPIINSEETIK 338
Query: 283 EVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF--ETRAAKAALAAANGEELQEVTD 340
+ EF+ K I + E P + + +S + KA L N E Q V
Sbjct: 339 KCEEFKEKSIWTDITNYEKENHPFAQYFQNEVHYSKIDAVLSGKATLETFN--EAQSVKT 396
Query: 341 GEEEEDEED 349
+ +D+ D
Sbjct: 397 LPKADDKSD 405
>gi|302686228|ref|XP_003032794.1| hypothetical protein SCHCODRAFT_82025 [Schizophyllum commune H4-8]
gi|300106488|gb|EFI97891.1| hypothetical protein SCHCODRAFT_82025 [Schizophyllum commune H4-8]
Length = 561
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 112/362 (30%), Positives = 168/362 (46%), Gaps = 64/362 (17%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ + G GY G+Q + KTIE ++ +A + G V+ D+ + P +
Sbjct: 133 AVLIGFCGSGYNGMQ---------IQKPPAKTIENELFDAFVRVGAVSRDNSDDPVKVGL 183
Query: 62 QRAARTDKGVSALKQIVSLKL-------PEEANKEAINEHLPEQIRILSIKRVTKGFNSK 114
+RAARTD GV A +VSLKL P+ + +NE LP QIR+ RVT F ++
Sbjct: 184 KRAARTDAGVHAAGNLVSLKLITAIPGVPDLVAR--VNEELPPQIRMWGFTRVTNSFEAR 241
Query: 115 NNCNARTYSYTCPTYAFATPQD----------------------------TKDD------ 140
C++R Y+Y P+Y P+ T+DD
Sbjct: 242 QMCDSRKYTYFFPSYMLIPPKPGTGNHTNLQQFCEDAPVPALDHPFWQGHTEDDPETEMQ 301
Query: 141 ----FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGL 196
+RL D+ L+ +++EGTHNFHNFT R D SC RY+ + P V
Sbjct: 302 RKRLWRLPSDKLEALRRTAEKFEGTHNFHNFTVGRTFQDRSCMRYMKKIEIADPVVYGDT 361
Query: 197 ELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQ 256
E I + + GQSFMLHQIRKM+ + R T ++++ +G +P P LGLLLE
Sbjct: 362 EWIAVTLHGQSFMLHQIRKMMSALVLSVRNDTPASVMDELYGARTSFIPKMPSLGLLLEH 421
Query: 257 VHYDLYNQKY-----GQDGMHE---SLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLA 308
+D YN+K G G E + F + + + F+ +FI + E + A
Sbjct: 422 PIFDSYNRKAKAESKGAPGDAEYRAPIDFDQYAEAIRAFKEEFIYMNMRAVEDRDGLFDA 481
Query: 309 WL 310
W+
Sbjct: 482 WI 483
>gi|449548175|gb|EMD39142.1| hypothetical protein CERSUDRAFT_81905 [Ceriporiopsis subvermispora
B]
Length = 427
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 108/362 (29%), Positives = 165/362 (45%), Gaps = 57/362 (15%)
Query: 5 FAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRA 64
+ G GY G+Q + G+KTIEG + AL K G V++D+ + P + RA
Sbjct: 1 MGFCGAGYNGMQIQT--------EPGIKTIEGTLFNALVKVGAVSKDNADNPTKVNLGRA 52
Query: 65 ARTDKGVSALKQIVSLKLPEEANK-----EAINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
ARTD GV A +VS+K+ +NE LP +IR+ + RV K FN++ +C++
Sbjct: 53 ARTDAGVHAAGNLVSMKVITAIPGVDDFVGRVNEELPPEIRLWGVVRVQKSFNARTSCDS 112
Query: 120 RTYSYTCPTYAFATPQD-----------------------------------TKDDFRLT 144
R Y+Y P+Y P+ K FR +
Sbjct: 113 RKYTYYFPSYLLIPPKPESGLFEALRRTGSEVPSHPFWTKLEANSTLENDLAAKRAFRAS 172
Query: 145 PDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIK 204
P+Q L+ K++EGTHNFHNFT R D S R++ + P V E I++
Sbjct: 173 PEQVQALRETAKKFEGTHNFHNFTVGRDFSDRSTQRHMKLIEIADPVVYGSTEWISVLFH 232
Query: 205 GQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQ 264
GQSFMLHQ+RKM+ + R T +IE+ +G +P P LGLLLE +D YN+
Sbjct: 233 GQSFMLHQLRKMMSALVLTCRTGTPPQIIEELYGPRMVFIPKMPALGLLLEYPIFDTYNR 292
Query: 265 KY---------GQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLAD 315
+ + + F + +++F+ + I + E E AW+ +
Sbjct: 293 RIVTVNEKLQPNDEEYRPPIDFEIHREAIDQFKQEHIYTRMRAIEDREAVFDAWIRSIDA 352
Query: 316 HS 317
+S
Sbjct: 353 YS 354
>gi|313223412|emb|CBY40401.1| unnamed protein product [Oikopleura dioica]
Length = 307
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/231 (39%), Positives = 135/231 (58%), Gaps = 17/231 (7%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+A++ +Y G Y GLQ N G + TIE + +AL A V + N +
Sbjct: 83 VAILISYCGKNYHGLQ----------HNPGDDKVDTIEKRVFQALVAAKVVYSNVINDRK 132
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPEEAN-KEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+Q +RTDKGVSA+ + SLK N E +N HLP+ IR+ S ++VTKGF +K
Sbjct: 133 KCAYQSCSRTDKGVSAIGNVASLKCKIPKNLCELVNAHLPDDIRLTSFEQVTKGFCAKKR 192
Query: 117 CNARTYSYTCPTYAFATPQDTK--DDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C RTYSY CPT F + +D FR++ ++ ++ LLK+Y GT ++HNFTS ++
Sbjct: 193 CTHRTYSYYCPTICFGSKEDWDRPSSFRISAEKLEGVRELLKKYIGTRSYHNFTSGKRQG 252
Query: 175 DPSCSRYIMSFDCE-QPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIA 224
D S R+I+ F + PF+ + E + L++ GQSFM+HQIRKMVG+ +A A
Sbjct: 253 DESAKRHILDFRIQGDPFICNEWEYVELRVVGQSFMIHQIRKMVGLIIARA 303
>gi|393243262|gb|EJD50777.1| pseudouridine synthase, partial [Auricularia delicata TFB-10046
SS5]
Length = 470
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 99/295 (33%), Positives = 148/295 (50%), Gaps = 39/295 (13%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++FAYSG G+ GLQ G T+E I +AL K G ++ D+ + P +++
Sbjct: 13 AVLFAYSGTGWNGLQ-------YHPPESGAVTVENTIFDALVKVGAISTDNADDPYKLKW 65
Query: 62 QRAARTDKGVSALKQIVSLKLPEEAN-KEAINEHLPEQIRILSIKRVTKGFNSKNNCNAR 120
QRAARTD GV AL ++S +L N E +N LP IR+ I RV FNS C +R
Sbjct: 66 QRAARTDAGVHALANVLSAQLCIVPNLVENLNAALPPNIRVWDIIRVQNSFNSHTFCESR 125
Query: 121 TYSYTCPTYAFATP--------------------------QDTKDDFRLTPDQFNFLQAL 154
YSYT PTY P D + +FR++P+ ++ L
Sbjct: 126 YYSYTLPTYLLRPPVPGSPLHAQIHKFPPPSVTEPVSYAANDERFEFRVSPEVLEKMREL 185
Query: 155 LKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIR 214
+ G H +HNFT+ P DP R + + + PFV+ GLE + + + GQSF++HQIR
Sbjct: 186 TSPFIGKHFYHNFTAAALPGDPDSRRTLHTITIDDPFVRGGLEWVKVNLHGQSFIMHQIR 245
Query: 215 KMVGVAMAIAR----GFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQK 265
KM + R G + L+++ + +P AP GL+LE+ +D Y ++
Sbjct: 246 KMAAALVLCTRTDTPGAVLRALMDRR-APGRTHVPRAPAPGLVLERPVFDGYYRR 299
>gi|409040526|gb|EKM50013.1| hypothetical protein PHACADRAFT_153289 [Phanerochaete carnosa
HHB-10118-sp]
Length = 555
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 115/365 (31%), Positives = 174/365 (47%), Gaps = 64/365 (17%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRN-QGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
A++ + G GY G+Q RN + +KTIEG + +AL + G V++D+ + P +
Sbjct: 121 ALLIGFCGSGYNGMQ--------LQRNHENIKTIEGTLFDALVRVGAVSKDNADNPAKVN 172
Query: 61 FQRAARTDKGVSALKQIVSLKL----PEEANKEA-INEHLPEQIRILSIKRVTKGFNSKN 115
F RAARTD GV A +VS+K+ P N A INE LP++IR+ RV FN++
Sbjct: 173 FNRAARTDAGVHAAGNLVSMKMITSIPGVDNLIARINEELPQEIRLWDTVRVQNAFNART 232
Query: 116 NCNARTYSYTCPTY---------------------------------AFATPQD---TKD 139
CNAR Y+Y P+Y A ++P D K
Sbjct: 233 TCNARKYTYFFPSYLLIPPKPGSGLHKTVFEQNSASSPLLDFWQGVPAESSPNDDLARKR 292
Query: 140 DFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELI 199
+R + L+ K++EG+H FHNFT ++ DP+ R + + P V E I
Sbjct: 293 TWRAPKEVVEMLRETAKKFEGSHKFHNFTVGQEYKDPTSQRIMKKIEVADPVVYGDTEWI 352
Query: 200 TLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHY 259
++ + GQSFMLHQ RKM+ + + R T ++E+ +G +P P LGLLLE +
Sbjct: 353 SVLLHGQSFMLHQ-RKMISLLVLACRTGTPPTVVEELYGPRSAFIPKMPALGLLLEYPIF 411
Query: 260 DLYNQKYGQDGMHESLHFH----------EVDKE-VNEFRHKFILPYLVKTEITEKPMLA 308
D YN+K +G + SL E+ +E + +F+ FI + E A
Sbjct: 412 DSYNKKI--EGTNASLKLDDPEYRLPIDFEIHREKIEKFKQGFIYSRMHSIESQSGLFDA 469
Query: 309 WLELL 313
W+ L
Sbjct: 470 WIRSL 474
>gi|224000315|ref|XP_002289830.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220975038|gb|EED93367.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 323
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 102/322 (31%), Positives = 160/322 (49%), Gaps = 69/322 (21%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
++ ++ G Y G Q N T++ I LFKAG ++ +F P +
Sbjct: 1 ILVSFLGTNYSGFQI----------NSTQHTLQAAIELGLFKAGLISPSNFGWPSKYSWS 50
Query: 63 RAARTDKGVSALKQIVSLK-----------LPEEAN--KEAINEHLPEQIRILSIKRVTK 109
+ARTDKGV A Q+VS+K + ++ N +E +NEHLP IR+L I+RVT+
Sbjct: 51 NSARTDKGVHAAAQVVSMKGEMIFHSDTVSIEDQLNAMREKVNEHLPNDIRVLDIERVTR 110
Query: 110 GFNSKNNCNARTYSYTCPTYAFA--------------------------TP-------QD 136
F ++ N + Y Y P++ F+ TP QD
Sbjct: 111 AFCARTNRDKVRYQYMVPSFMFSSREEICCAFGNIGETAIEDAKSRAKITPMEASNIVQD 170
Query: 137 TKDD------------FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMS 184
D +R+ DQ L++ LK +EGTH FHN+T + + S SRYI+S
Sbjct: 171 AVTDEVMQQARGKLIGYRVNDDQMERLRSGLKVFEGTHTFHNYTRRLGSDNASASRYIIS 230
Query: 185 FDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGL-DQFD 243
F P V DG E I ++I GQSF+L+QIRKM+ A+ +ARG + + I+++ +
Sbjct: 231 FAPLDPIVVDGTEWIPVQIVGQSFLLNQIRKMISAAVDLARGTVTHEQIQQSLKKGSRMK 290
Query: 244 LPMAPGLGLLLEQVHYDLYNQK 265
+ +AP GL L++ +++LYN++
Sbjct: 291 VNVAPAQGLFLDRSYFELYNKQ 312
>gi|384496829|gb|EIE87320.1| hypothetical protein RO3G_12031 [Rhizopus delemar RA 99-880]
Length = 442
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 113/357 (31%), Positives = 167/357 (46%), Gaps = 72/357 (20%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ ++G GY G+Q N KTIEG I EAL KAG V++D+ + P+ +Q
Sbjct: 83 VALLVGFNGTGYQGMQ----------LNPNSKTIEGAIFEALCKAGGVSKDNASDPKKMQ 132
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK-EAINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
+P + + E N LPEQIRI V F++K C++
Sbjct: 133 ---------------------IPGDYDVIERANSFLPEQIRIWGYVPVIGSFHAKTLCDS 171
Query: 120 RTYSYTCPTYAFATP------------QD---TKDD----------------------FR 142
R Y Y PT A P D T +D FR
Sbjct: 172 RIYEYLLPTCALMEPIVAELTDEQLFPNDLILTNNDRENPIVKYARRSTPEVIAKRHAFR 231
Query: 143 LTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLK 202
+ +Q +K +EG+HNFHN+T + D S RYI +P E I++K
Sbjct: 232 ASKEQLQKFTEAMKAFEGSHNFHNYTLGKGYKDKSARRYIKGITVGEPIYIHDTEWISIK 291
Query: 203 IKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLY 262
+ GQSFMLHQIRKM+ + M IAR T LI++TFG + ++P AP LGLLLE+ +D+Y
Sbjct: 292 LHGQSFMLHQIRKMISMGMLIARTHTPISLIQETFGEKRINIPKAPALGLLLERPVFDVY 351
Query: 263 NQKYGQDGMHES---LHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADH 316
N+K + E + F + +++ F+ ++I + TE+ E +L L H
Sbjct: 352 NEKLLKKSNKEDRIKIDFDQHKSKMDAFKQEWIYNKIFDTELEEHVFDGYLTSLDAH 408
>gi|392589992|gb|EIW79322.1| pseudouridine synthase [Coniophora puteana RWD-64-598 SS2]
Length = 569
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 107/376 (28%), Positives = 173/376 (46%), Gaps = 68/376 (18%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ + G G+ G+Q + ++TIEG + +AL + G V++D+ + P +
Sbjct: 138 ALLLGFCGRGFNGMQIQ----------PDVRTIEGVLFDALVRVGAVSQDNADDPVKVSL 187
Query: 62 QRAARTDKGVSALKQIVSLKL----PEEAN-KEAINEHLPEQIRILSIKRVTKGFNSKNN 116
RAARTD GV A +VS+KL P + E +N LP +IR+ S RV FN++
Sbjct: 188 GRAARTDAGVHAAGNLVSMKLITAIPGVPDFIERLNTELPPEIRVWSEVRVQNSFNARTA 247
Query: 117 CNARTYSYTCPTYA--------------------------------FATPQDT------- 137
C++R Y+Y P+Y +A+P D
Sbjct: 248 CDSRKYTYLFPSYLLVPPKPGSGLHAVLDAHAKSTSETITLPEPDFWASPADVASGAGED 307
Query: 138 ---KDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKD 194
K +R +P N L+ + +EGTHNFHNFT R + + R++ + P +
Sbjct: 308 LVRKRQYRASPTAINRLREAARAFEGTHNFHNFTVGRIFSERASQRHMKCIEVGDPEIHG 367
Query: 195 GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLL 254
G E I++ GQSFMLHQ+RKM+ + +R T +I++ +G +P P LGLLL
Sbjct: 368 GTEWISVMFHGQSFMLHQVRKMMSALVLSSRIGTPARVIDEMYGPRVVFVPKMPALGLLL 427
Query: 255 EQVHYDLYNQKYGQDGMHESLHFHEVD-----------KEVNEFRHKFILPYLVKTEITE 303
E +D YN + SL + D +++ F+ +FI + + E E
Sbjct: 428 EYPIFDSYNARIQGANFKASLSPDDPDFRAQIDFEKHRSDIDAFKQRFIYDAMREVEDRE 487
Query: 304 KPMLAWLELLADHSFE 319
AW+ + ++ E
Sbjct: 488 GIFDAWIRSVDSYTGE 503
>gi|239735631|gb|ACS12725.1| MIP10620p [Drosophila melanogaster]
Length = 341
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 80/163 (49%), Positives = 108/163 (66%), Gaps = 14/163 (8%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ +Y G Y+G+Q RN GM+TIE ++ +A+ K ++TEDSF Q F
Sbjct: 130 AILLSYCGANYYGMQ----------RNPGMQTIEEELFKAMLKHKWITEDSFEQIQISCF 179
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
QRAARTDKGVSA +Q+ S+KLPEE + EA N LP+QIR+ ++RVTKGFN+K+ CNART
Sbjct: 180 QRAARTDKGVSAARQVCSVKLPEELDLEAFNADLPQQIRLFGVERVTKGFNAKDQCNART 239
Query: 122 YSYTCPTYAFA----TPQDTKDDFRLTPDQFNFLQALLKQYEG 160
Y+YT PT AFA D D FR++P+ ++ LK YEG
Sbjct: 240 YTYTLPTVAFAPFEEKVDDVHDTFRISPELLQKVKETLKLYEG 282
>gi|409081331|gb|EKM81690.1| hypothetical protein AGABI1DRAFT_118781 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 550
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 107/371 (28%), Positives = 174/371 (46%), Gaps = 66/371 (17%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ + G GY G+Q +KTIEG + +AL +AG V++D+ N P +
Sbjct: 107 ALLIGFCGSGYNGMQ---------MYPPPLKTIEGTLFKALVEAGAVSQDNANDPVKVAL 157
Query: 62 QRAARTDKGVSALKQIVSLKL-------PEEANKEAINEHLPEQIRILSIKRVTKGFNSK 114
RAARTD GV A IVSLK+ P+ + +NE LP +IR+ R FN++
Sbjct: 158 ARAARTDAGVHAAGNIVSLKMIMHVPGIPDLVGR--VNELLPPEIRLWGYVRAQNSFNAR 215
Query: 115 NNCNARTYSYTCPTYA--------------------------------FATPQDTKDD-- 140
C++R Y+Y P+Y + P +K+D
Sbjct: 216 LACDSRKYTYYFPSYLLIPPKPGSNLHRVLAQHAESLGHNGSILSHSFWDNPNSSKEDDM 275
Query: 141 -----FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDG 195
+R+T D+ L+ +++ GTHNFHNFT R D S R++ S + P
Sbjct: 276 RRKRAWRVTQDRIADLRTAAQKFIGTHNFHNFTVGRDASDKSNMRHMKSIEIADPVTHGD 335
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
E +++ GQSFMLHQ+RKM+ + R TS +++ + + +P P LGLLLE
Sbjct: 336 TEWVSVLFHGQSFMLHQVRKMMSSLVLSCRTNTSPNIVTELYKNPDAFIPKMPSLGLLLE 395
Query: 256 QVHYDLY-------NQKYGQDG--MHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPM 306
+ + Y N+K+ D + F ++NEF+ +FI + + E +
Sbjct: 396 EPIFASYNSRMNTVNEKHKPDSPDYRPMIDFEPYRSQINEFKDQFIYKNMREIEDRDGLF 455
Query: 307 LAWLELLADHS 317
AW+ ++ +++
Sbjct: 456 DAWIRMVDNYA 466
>gi|363749077|ref|XP_003644756.1| hypothetical protein Ecym_2190 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888389|gb|AET37939.1| Hypothetical protein Ecym_2190 [Eremothecium cymbalariae
DBVPG#7215]
Length = 571
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 117/395 (29%), Positives = 175/395 (44%), Gaps = 93/395 (23%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M Y G GY G+Q N TIE + +A KAG +++ + +
Sbjct: 112 VAVMVGYCGTGYHGMQ----------YNPPNPTIEAALFDAFVKAGAISKANSTDLKKNG 161
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F RAARTDKGV A ++SLKL + + +E IN+ LP IR+ SI RV K F+S+ C+
Sbjct: 162 FMRAARTDKGVHAGGNVISLKLIIEDSSIREKINDILPPSIRVWSINRVNKAFDSRKLCS 221
Query: 119 ARTYSYTCPTYAFATP-------------------------------------------- 134
+R Y Y PTY+ P
Sbjct: 222 SRWYEYLLPTYSLIGPKPGSYLYQEVEQSKEELPNVLDDDEESVQFWKSFEKTVKATFTE 281
Query: 135 QDTKDDFRLTP------DQFNFLQALLKQYEGTHNFH----------------------- 165
Q+ ++ TP D+ N L +KQY+ N H
Sbjct: 282 QELQEIVEYTPPSREAFDESNDLYQKVKQYKKIENSHRRAYRVSESKLNKFRSSLEQYLG 341
Query: 166 -----NFTSKRKPLDPSCSRYIMSFDCEQPFVKDGL--ELITLKIKGQSFMLHQIRKMVG 218
NFT + DPS R+I +PFV + E +++KI GQSFMLHQIRKM+
Sbjct: 342 HHNFHNFTLGKDFKDPSACRFIKEVTVSEPFVIGDMKTEWVSIKIHGQSFMLHQIRKMIS 401
Query: 219 VAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFH 278
+A I R I + +G + ++P AP LGLLLE YD YN++ + G +E ++F
Sbjct: 402 MATLITRCGCPISRISQAYGPQKINIPKAPALGLLLEFPVYDGYNKRLEEFG-YEPINFS 460
Query: 279 EVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELL 313
+ ++++ F+ I + K E+ E A+ +
Sbjct: 461 KYQRDIDSFKMVHIYDKIYKEEVDENVFNAFFSYI 495
>gi|444314537|ref|XP_004177926.1| hypothetical protein TBLA_0A06150 [Tetrapisispora blattae CBS 6284]
gi|387510965|emb|CCH58407.1| hypothetical protein TBLA_0A06150 [Tetrapisispora blattae CBS 6284]
Length = 496
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 117/385 (30%), Positives = 172/385 (44%), Gaps = 93/385 (24%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M Y G GY GLQ N TIE + +A +G +++ + +
Sbjct: 84 VAVMIGYCGAGYCGLQY----------NPPNPTIESTLFKAFCDSGAISKANSTDLKKNG 133
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEAN--KEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F R ARTDKGV A ++SLK+ E K+ IN+ LPE IR+ IKRV K F+ + C
Sbjct: 134 FARTARTDKGVHAGGNLISLKMIIEDPDIKQKINDALPEGIRVWDIKRVNKAFDCRKMCG 193
Query: 119 ARTYSYTCPTYAFATPQ-DT------------------------------KDDF--RLTP 145
+R Y Y PTY+ P+ DT KDD + TP
Sbjct: 194 SRWYEYLLPTYSLIGPKPDTTLYNEVEQSKLEYPNVLDDDSESREFWKNLKDDVKEKFTP 253
Query: 146 DQFNFLQALL--------------------KQYEGTH----------------------- 162
++ ++A + KQ E H
Sbjct: 254 EEIAAIKAYVPPPKEEFVDSDGLYQKVKQYKQLENAHRRKHRISKEKLEKFRVVMKQYLG 313
Query: 163 --NFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDG--LELITLKIKGQSFMLHQIRKMVG 218
NFHNFT ++ DPS R++ PFV E I++KI GQSFMLHQIRKM+
Sbjct: 314 AHNFHNFTLGKEYKDPSAIRFMKDITISDPFVIGAAETEWISIKIHGQSFMLHQIRKMIS 373
Query: 219 VAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFH 278
+A + R D I + +G + ++P AP LGLLLE ++ YN++ + G ++ + F
Sbjct: 374 MATLVTRCGCPADRITEAYGTQRLNIPKAPALGLLLEAPVFEGYNKRLTEFG-YDPIDFS 432
Query: 279 EVDKEVNEFRHKFILPYLVKTEITE 303
+ E++ F+ K I + K E+ E
Sbjct: 433 KYQTEMDAFKMKHIYDKIYKEEVDE 457
>gi|302810046|ref|XP_002986715.1| hypothetical protein SELMODRAFT_124462 [Selaginella moellendorffii]
gi|300145603|gb|EFJ12278.1| hypothetical protein SELMODRAFT_124462 [Selaginella moellendorffii]
Length = 318
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 106/319 (33%), Positives = 161/319 (50%), Gaps = 23/319 (7%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A+ Y G GY G+Q RN G TIEG + EAL +AG + + + + +
Sbjct: 5 ALFVVYCGAGYKGMQ----------RNPGAATIEGVLEEALVRAGAIGSNGCSR-NWLDW 53
Query: 62 QRAARTDKGVSALKQIVSLKL---PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+RAARTDK VSAL Q+VS +L P+ ++ NE LP IR+L KRV F++K C
Sbjct: 54 KRAARTDKEVSALGQVVSARLYLTPDLVHR--TNEFLPGSIRLLGFKRVPDDFSAKKMCA 111
Query: 119 ARTYSYTCPTYAF--ATPQDTKDDFRLTPDQFNFLQALLKQYEGT-HNFHNFTSKRKPLD 175
+R Y Y P +AF T D +++F ++FN +L ++ GT H+FHNF+ + +P D
Sbjct: 112 SRRYEYVLPIFAFDPRTGDDLEEEFLFDFERFN---QILGRFLGTDHSFHNFSWRVRPGD 168
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
R ++ F G E + + + +SFM +QIRKMVG+A+A+ R I +
Sbjct: 169 REARRTVVEFRAADKIWIGGSEFVRIIVLARSFMAYQIRKMVGLAVAVMRDIAPVTTINR 228
Query: 236 TFGLD-QFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+ +P AP +GLLL++ Y YN E + + EF+ K I
Sbjct: 229 ALRSEVDVIVPTAPEVGLLLDESFYHDYNAAASTPEESRIALGLEFGEAMQEFKSKVIYA 288
Query: 295 YLVKTEITEKPMLAWLELL 313
++ E + + WL L
Sbjct: 289 HIAHREREQGIVAKWLPSL 307
>gi|403176397|ref|XP_003335055.2| hypothetical protein PGTG_16662 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375172233|gb|EFP90636.2| hypothetical protein PGTG_16662 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 551
Score = 157 bits (397), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 104/346 (30%), Positives = 153/346 (44%), Gaps = 91/346 (26%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M Y G GY G Q N G KTIEG + A +AG +T+D+ P +
Sbjct: 44 VAIMIGYYGRGYQGSQI----------NPGTKTIEGTLFNAFVRAGCITQDNSTHPNKVG 93
Query: 61 FQRAARTDKGVSALKQIVSLKL---PEEANKEA-----INEHLPEQIRILSIKRVTKGFN 112
QRAARTD VSA ++SLKL P E ++ IN LP ++I I RV FN
Sbjct: 94 LQRAARTDANVSACCNLISLKLILNPPEIGQDKRMDQHINRFLPSDMKIWEIIRVQNSFN 153
Query: 113 SKNNCNARTYSYTCPTYAFATPQD------------------------------------ 136
++ C++R Y Y+ PT+ F P+
Sbjct: 154 PRSFCDSRVYEYSLPTWLFLPPKPGSPLHQRLMKLNQNRIKKTGEEEEDAEKEEDPEANW 213
Query: 137 TKDDFRLTPDQFNFLQA------------------LLKQYEGTHNFHNFTSKRKPLDPSC 178
D L F +QA +L Q+ GTHNFHN T + + +
Sbjct: 214 WNDHSNLLEKDFKSIQAERRGSYRISQMMIARIKSVLDQFRGTHNFHNLTVGKAFTERNA 273
Query: 179 SRYIMSFDCEQPFVKDG-------------------LELITLKIKGQSFMLHQIRKMVGV 219
R + F +PF+ G E I++ GQSFMLHQIRKM+G+
Sbjct: 274 VRIMKDFTVSEPFLVGGSDPTNPKDDDDHQPLENPPTEWISITFHGQSFMLHQIRKMIGL 333
Query: 220 AMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQK 265
+ + R T +I++ +G + +P APG+GL+L ++++ YN+K
Sbjct: 334 LVLVCRTRTPVSIIKQLYGPRKVSIPKAPGIGLILRKLNFHGYNKK 379
>gi|302818082|ref|XP_002990715.1| hypothetical protein SELMODRAFT_132245 [Selaginella moellendorffii]
gi|300141453|gb|EFJ08164.1| hypothetical protein SELMODRAFT_132245 [Selaginella moellendorffii]
Length = 318
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 105/319 (32%), Positives = 162/319 (50%), Gaps = 23/319 (7%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A+ Y G GY G+Q RN G TIEG + EAL +AG + + + + +
Sbjct: 5 ALFVVYCGAGYKGMQ----------RNPGALTIEGVLEEALGRAGAIGSNGCSR-NWLDW 53
Query: 62 QRAARTDKGVSALKQIVSLKL---PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+RAARTDK VSAL Q+VS +L P+ ++ NE LP I++L KRV F++K C+
Sbjct: 54 KRAARTDKEVSALGQVVSARLYLTPDLVHR--TNEFLPGSIQLLGFKRVPDDFSAKKMCD 111
Query: 119 ARTYSYTCPTYAF--ATPQDTKDDFRLTPDQFNFLQALLKQYEGT-HNFHNFTSKRKPLD 175
+R Y Y P +AF T D +++F ++FN +L ++ GT H+FHNF+ + +P D
Sbjct: 112 SRRYEYVLPVFAFDPRTGDDLEEEFLFDFERFN---QILGRFLGTDHSFHNFSWRVRPGD 168
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
R ++ F G E + + + +SFM +QIRKMVG+A+A+ R I +
Sbjct: 169 REARRTVVEFRAADKIWIGGSEFVRIIVLARSFMAYQIRKMVGLAVAVMRDIAPVTTINR 228
Query: 236 TFGLD-QFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+ +P AP +GLLL++ Y YN E + + EF+ K I
Sbjct: 229 ALRSEVDVIVPTAPEVGLLLDESFYHDYNAAASTPEESRIALGLEFGEAMQEFKSKVIYA 288
Query: 295 YLVKTEITEKPMLAWLELL 313
++ E + + WL L
Sbjct: 289 HIAHREREQGIVAKWLPSL 307
>gi|336381199|gb|EGO22351.1| hypothetical protein SERLADRAFT_473077 [Serpula lacrymans var.
lacrymans S7.9]
Length = 421
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 103/338 (30%), Positives = 161/338 (47%), Gaps = 60/338 (17%)
Query: 31 MKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKL----PEEA 86
++TIEG + AL +AG V++D+ + P + RAARTD GV A +VS+KL P
Sbjct: 7 VRTIEGVLFGALVRAGAVSQDNADDPVKVSLGRAARTDAGVHAAGNLVSMKLITTIPGVN 66
Query: 87 NKEA-INEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQ---------- 135
+ A INE LP +IR+ RV FN++ +C++R Y+Y P+Y P+
Sbjct: 67 DIVARINEELPPEIRLWGHVRVQNSFNARMSCDSRKYTYFFPSYLLIPPKPGSGLHRTLG 126
Query: 136 -------------------------DTKDD-------FRLTPDQFNFLQALLKQYEGTHN 163
T++D +R++ D L+ + +YEGTHN
Sbjct: 127 QHADSTKAPSDAIKPSHPFWGTGDTSTREDDLERKRKWRISADSIERLRLTVHKYEGTHN 186
Query: 164 FHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAI 223
FHNFT R+ D S R++ + +P V G E I++ GQSFMLHQ+RKM+ +
Sbjct: 187 FHNFTVGREFGDRSNQRHMKKIEISEPAVYGGTEWISVLFHGQSFMLHQVRKMMAALVLS 246
Query: 224 ARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVD-- 281
R T +I++ +G +P P LGLLLE ++ YN+K ++ L D
Sbjct: 247 CRTDTPDQVIDELYGPRTVFIPKMPALGLLLEYPIFESYNRKVS--AINNKLELTHPDYR 304
Query: 282 ---------KEVNEFRHKFILPYLVKTEITEKPMLAWL 310
++++F+ K+I + E AW+
Sbjct: 305 PLIDFEMHRDDIDKFKQKYIYDNMRSIEDHSGIFDAWI 342
>gi|119618937|gb|EAW98531.1| pseudouridylate synthase 1, isoform CRA_b [Homo sapiens]
Length = 162
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 111/163 (68%), Gaps = 3/163 (1%)
Query: 187 CEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPM 246
CE+PFV++GLE +++KGQSFM+HQIRKMVG+ +AI +G+ + ++E+++G ++ D+P
Sbjct: 3 CEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGTEKVDVPK 62
Query: 247 APGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPM 306
APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V F+ + I P ++ TE E+ M
Sbjct: 63 APGLGLVLERVHFEKYNQRFGNDGLHEPLDWAQEEGKVAAFKEEHIYPTIIGTERDERSM 122
Query: 307 LAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEEDEED 349
WL L H+F +A A A G ++ +G E + + D
Sbjct: 123 AQWLSTLPIHNF---SATALTAGGTGAKVPSPLEGSEGDGDTD 162
>gi|242223970|ref|XP_002477524.1| predicted protein [Postia placenta Mad-698-R]
gi|220722803|gb|EED77277.1| predicted protein [Postia placenta Mad-698-R]
Length = 407
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/338 (31%), Positives = 163/338 (48%), Gaps = 58/338 (17%)
Query: 31 MKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKL----PEEA 86
++TIEG + AL K G V++D+ + P + RAARTD GV A +VS+KL P
Sbjct: 6 LRTIEGVLFNALVKVGAVSQDNADDPIKVNLGRAARTDAGVHAAGNVVSMKLITAIPGVG 65
Query: 87 N-KEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAF-------------- 131
+ +NE LP +IR+ ++ RV FN++ R Y+Y P+Y
Sbjct: 66 DLISRVNEELPPEIRLWNVLRVQNSFNAR----TRKYTYFFPSYLMIPPKPGSGLFQIAQ 121
Query: 132 ------------------ATPQD---TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSK 170
AT QD K +R+ P+Q L+A +++EG+HNFHNFT
Sbjct: 122 QNDGNELKHIFWNSPAPEATWQDDLRRKRQYRMPPEQVEALRAASRKFEGSHNFHNFTVG 181
Query: 171 RKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSK 230
R D SC R+I S + P V G E +++ GQSFMLHQ RKM+ + R +
Sbjct: 182 RDFGDRSCMRHIKSVEIADPVVYGGTEWVSVLFHGQSFMLHQ-RKMMSALVLACRTGSPP 240
Query: 231 DLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESL------HFHEVDKEV 284
IE+ +G +P P LGLLLE +D Y ++ ++E+L + +D EV
Sbjct: 241 QTIEEMYGPRTVFIPKMPALGLLLEYPIFDTYTRRIA--SVNENLQPSDPEYRQPIDFEV 298
Query: 285 -----NEFRHKFILPYLVKTEITEKPMLAWLELLADHS 317
++F+ + I + E TE AW+ + +S
Sbjct: 299 HRGAIDQFKQEHIYSRMRSIEDTEGVFDAWVRFIDSYS 336
>gi|320164169|gb|EFW41068.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 311
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 125/254 (49%), Gaps = 28/254 (11%)
Query: 89 EAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQF 148
E INE LP IR RV FN++ C +R YSYT PT+AFA + D+R+
Sbjct: 9 ERINEQLPHDIRAHGYARVAGSFNARTACTSRVYSYTLPTFAFAPYKSMTWDYRIDAATL 68
Query: 149 NFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVK--------------- 193
++ +Y G+H FHN+T K + D R + S P +
Sbjct: 69 QKVRDTFAKYTGSHRFHNYTIKVRINDAQAMRVMQSCTVNDPLLTPIDREWLAANPEPVS 128
Query: 194 -------------DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD 240
LE++T+ I+GQSFM +QIRKMVG+ +AI RG + I +F L
Sbjct: 129 ADQPAPEGCPDHLTHLEMVTMVIEGQSFMYNQIRKMVGMVIAIVRGQSETFSIPNSFTLP 188
Query: 241 QFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
Q +P APGLGL LE+V + Y +K+G+ H S+HF + + +F+ + +V E
Sbjct: 189 QMAVPRAPGLGLALERVKFRDYERKFGKSDGHGSVHFDSANAALAQFKFDLVDREVVLKE 248
Query: 301 ITEKPMLAWLELLA 314
E M WLE L+
Sbjct: 249 AREGVMYHWLEELS 262
>gi|365990127|ref|XP_003671893.1| hypothetical protein NDAI_0I00810 [Naumovozyma dairenensis CBS 421]
gi|343770667|emb|CCD26650.1| hypothetical protein NDAI_0I00810 [Naumovozyma dairenensis CBS 421]
Length = 328
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 155/308 (50%), Gaps = 30/308 (9%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTE-DSFNTPQNI 59
+A+M Y G GY+G+Q N +TIE + AL ++E +S + +N
Sbjct: 33 VAIMLGYRGTGYYGMQ----------YNPPRETIESTLFNALVSVDAISEKNSLDISKN- 81
Query: 60 QFQRAARTDKGVSALKQIVSLKL----PEEAN--KEAINEHLPEQ---IRILSIKRVTKG 110
R ARTDKGV A ++SLK+ P N K +N L E ++I I+R+ K
Sbjct: 82 GLMRTARTDKGVHAAGNLISLKVLMKDPNTLNELKTKLNGVLSESGSGLKIWDIRRINKS 141
Query: 111 FNSKNNCNARTYSYTCPTYAFATPQ-------DTKDDFRLTPDQFNFLQALLKQYEGTHN 163
FN + C++R Y Y P D +R++ N Q + QY G+HN
Sbjct: 142 FNCRKVCSSRWYEYLLPACVLDNTVTRGPLNLDILKKYRVSDTILNKFQNVSNQYIGSHN 201
Query: 164 FHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAI 223
FHNFT K+ D SC RY+ + +E I++++ GQSFM++QIRKM+ +A+ +
Sbjct: 202 FHNFTVKKTSTDLSCKRYVKKIIIAPLVDMNNIEWISVRLHGQSFMMNQIRKMLSLAIYL 261
Query: 224 ARGFTSKDLIEKTFGLD-QFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDK 282
R + F D + +P AP GLLL+ +D YN+K + G + + F++ K
Sbjct: 262 TRYDYPSSTVNSLFATDIKVYIPNAPASGLLLDFPIFDAYNEKLIKLG-YSPIEFNQYRK 320
Query: 283 EVNEFRHK 290
++N+F+ K
Sbjct: 321 KMNDFKKK 328
>gi|323449394|gb|EGB05282.1| hypothetical protein AURANDRAFT_12283 [Aureococcus anophagefferens]
Length = 239
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 123/239 (51%), Gaps = 27/239 (11%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ Y G Y+GLQ + + + TIE + EAL +AG V E + I
Sbjct: 8 LALLLGYRGANYYGLQKQ-------SKESDLPTIELALQEALNRAGAVHEGNQGDLSKIG 60
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK-----EAINEHLPEQIRILSIKRVTKGFNSKN 115
+ RAARTDK VSA +Q+VS KL E + E +N LP+ I++ RV KGFN K
Sbjct: 61 WSRAARTDKRVSAARQVVSAKLEVENDDVPALLERLNGELPDDIKVFDAVRVIKGFNCKQ 120
Query: 116 NCNARTYSYTCPTYAFATPQDTKDDF----------RLTPDQFNFLQALLKQYEGTHNFH 165
+C+ R Y+Y PT+ A + F R P L+ L Y GT +H
Sbjct: 121 SCDRRHYTYLLPTFLLAPDEAIDAAFDAVAQRLAPHRAAPTLLERLRGFLAAYVGTRKYH 180
Query: 166 NFTSKRKPLDPSCSRYIMSFDCEQPF-----VKDGLELITLKIKGQSFMLHQIRKMVGV 219
NFT+K KP D + R+I+SF + P DG E + L + GQSF++H IRKMV V
Sbjct: 181 NFTNKLKPTDMAAQRFIVSFTADDPTYPSGDAADGAEWVKLDVVGQSFLMHMIRKMVAV 239
>gi|290987319|ref|XP_002676370.1| predicted protein [Naegleria gruberi]
gi|284089972|gb|EFC43626.1| predicted protein [Naegleria gruberi]
Length = 477
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 115/375 (30%), Positives = 185/375 (49%), Gaps = 42/375 (11%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ Y G Y G Q+ N +KT+E + +AL +AG V+ D+ +
Sbjct: 118 VAIFIGYLGTNYNGSQTSNF------TNPNVKTVEETVFKALCQAGGVSGDNSTDMNKVH 171
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEAN-KEAINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
F R++RTDKGV A ++ +KL + +E + + LPE I K+V+K FN+K +C A
Sbjct: 172 FHRSSRTDKGVHAASNVLEMKLLMKPGLEEEMRKLLPEDIVFYGYKKVSKSFNAKEHCTA 231
Query: 120 RTYSYTCPTYAFA-----------------TPQDTKD-------DFRLTPDQFNFLQALL 155
RTY Y P +A + T +D + ++ T +Q +L
Sbjct: 232 RTYEYLLPAFALSPDPKAATWFGQINIDKITKEDVESENLNDIYNYDPTDEQIEKANRVL 291
Query: 156 KQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRK 215
K + GT++FHN+T K S +R+I F+C + F DG++++ L + G SF+ +QIRK
Sbjct: 292 KNFVGTNSFHNYTQLTKAKPNSFNRHITKFECSKAFEIDGMKVVKLTVTGSSFIYNQIRK 351
Query: 216 MVGVAMAIARG-FTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHES 274
MVG +A+ RG D ++P+AP GLLL + + YN K G ++
Sbjct: 352 MVGFMIAVMRGSLNESDFSTSVDKEVTANVPLAPANGLLLCEQEFKRYNAKQGAK-VNGH 410
Query: 275 LHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEE 334
+ + KE+ EF+ K I +++K E E+ ++A L HS R +K + GE
Sbjct: 411 VTPSDYYKEMEEFK-KRIYSHMLKLE-KEEGIIAKFLL---HSRGWRLSK----GSKGEP 461
Query: 335 LQEVTDGEEEEDEED 349
+ V + E EED
Sbjct: 462 INNVEEPVLESIEED 476
>gi|336368400|gb|EGN96743.1| hypothetical protein SERLA73DRAFT_140490 [Serpula lacrymans var.
lacrymans S7.3]
Length = 521
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 108/370 (29%), Positives = 171/370 (46%), Gaps = 71/370 (19%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ + G G G+Q + ++TIEG + AL +AG V++D+ + P +
Sbjct: 89 ALLIGFCGTGCNGMQIQ----------PDVRTIEGVLFGALVRAGAVSQDNADDPVKVSL 138
Query: 62 QRAARTDKGVSALKQIVSLKL----PEEANKEA-INEHLPEQIRILSIKRVTKGFNSKNN 116
RAARTD GV A +VS+KL P + A INE LP +IR+ RV FN++ +
Sbjct: 139 GRAARTDAGVHAAGNLVSMKLITTIPGVNDIVARINEELPPEIRLWGHVRVQNSFNARMS 198
Query: 117 CNARTYSYTCPTYAFATPQ-----------------------------------DTKDD- 140
C++R Y+Y P+Y P+ T++D
Sbjct: 199 CDSRKYTYFFPSYLLIPPKPGSGLHRTLGQHADSTKAPSDAIKPSHPFWGTGDTSTREDD 258
Query: 141 ------FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKD 194
+R++ D L+ + +YEGTHNFHNFT R+ D S R++ + +P V
Sbjct: 259 LERKRKWRISADSIERLRLTVHKYEGTHNFHNFTVGREFGDRSNQRHMKKIEISEPAVYG 318
Query: 195 GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLL 254
G E I++ GQSFMLHQ RKM+ + R T +I++ +G +P P LGLLL
Sbjct: 319 GTEWISVLFHGQSFMLHQ-RKMMAALVLSCRTDTPDQVIDELYGPRTVFIPKMPALGLLL 377
Query: 255 EQVHYDLYNQKYGQDGMHESLHFHEVD-----------KEVNEFRHKFILPYLVKTEITE 303
E ++ YN+K ++ L D ++++F+ K+I + E
Sbjct: 378 EYPIFESYNRKVS--AINNKLELTHPDYRPLIDFEMHRDDIDKFKQKYIYDNMRSIEDHS 435
Query: 304 KPMLAWLELL 313
AW+ +
Sbjct: 436 GIFDAWIRSI 445
>gi|403216363|emb|CCK70860.1| hypothetical protein KNAG_0F01920 [Kazachstania naganishii CBS
8797]
Length = 372
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 102/343 (29%), Positives = 164/343 (47%), Gaps = 40/343 (11%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++F YSG +G+Q T+E + +A+ G + + +
Sbjct: 14 VAVLFGYSGSQLYGMQ-------YIADASRFPTVESRLFDAIRGTGAIMAHNSDDIYKNG 66
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEAN-KEAINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
+ RA RTDKGV AL +VSLKL A+ +N LPE IR+ +I+ V K F+ K C
Sbjct: 67 WNRACRTDKGVHALGNVVSLKLNLTADLVPRLNAQLPEGIRVWAIQSVNKQFSGKTACGG 126
Query: 120 RTYSYTCPTY--------------------------AFA-TPQDTKDDFRLTPDQFNFLQ 152
R Y Y P++ A+A + Q +R+ D + L+
Sbjct: 127 RWYEYIFPSFILMGHSKFHRIRLNQSQKFDEDTNYEAYAKSLQVPLSQYRVDQDTVSSLR 186
Query: 153 ALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVK----DGLELITLKIKGQSF 208
+++Y GTHNFHNFT+K++ D RYI QPF + D EL++++I+GQSF
Sbjct: 187 QYMQEYLGTHNFHNFTTKKQFTDRDVKRYISDVVVSQPFQRAAHPDEPELMSIRIRGQSF 246
Query: 209 MLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQ 268
M+HQIRKM+ +A+ + + G + +P P GL L+ +D YN+K +
Sbjct: 247 MIHQIRKMIAMAVIFHHYGIPPEQLNDILGETKQYIPKVPSSGLFLDFPLFDSYNRKLVE 306
Query: 269 DGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLE 311
G H + F + E+ + + +LP +V+ T +L+
Sbjct: 307 CG-HSPIDFQDYSSEMFQLKQALLLPEIVRAVQTRHEYAKFLD 348
>gi|170086730|ref|XP_001874588.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164649788|gb|EDR14029.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 525
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 109/362 (30%), Positives = 171/362 (47%), Gaps = 56/362 (15%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ + G GY G+Q ++ +TIEG + AL K G V++D+ + P +
Sbjct: 101 ALLVGFCGSGYSGMQ-------MYGHT---RTIEGALFGALVKVGAVSQDNADDPVKVAL 150
Query: 62 QRAARTDKGVSALKQIVSLKL----PEEANKEA-INEHLPEQIRILSIKRVTKGFNSKNN 116
RAARTD GV A +VSLK+ P + A INE LP +IR+ R FN++
Sbjct: 151 ARAARTDAGVHAAGNLVSLKMIITVPGIKDLVARINEELPPEIRLWGYVRTQNSFNARLV 210
Query: 117 CNARTYSYTCPTYAFATPQDT-------------------------KDD------FRLTP 145
C++R Y+Y PTY P+ +DD +R
Sbjct: 211 CDSRKYTYFFPTYLMIPPKPGTGLHRVLQLPSQPHSFWEGAISDSFQDDLRRKRCWRTGQ 270
Query: 146 DQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKG 205
+Q L+ L K YEGTHNFHNFT R+ + S R++ + P V E I++ G
Sbjct: 271 EQVQKLRELAKGYEGTHNFHNFTVGREFKERSNHRFMKQIEVSDPVVYGDTEWISVMFHG 330
Query: 206 QSFMLHQIRK-MVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQ 264
QSFMLHQ+R+ M+ + + R TS +I++ +G +P P LGLLLE + YN
Sbjct: 331 QSFMLHQVRRLMMSMLVMTCRTETSPQIIDELYGPRNVFVPKMPSLGLLLEHPLFHSYNG 390
Query: 265 KYG--------QDGMHESLHFHEVDKE-VNEFRHKFILPYLVKTEITEKPMLAWLELLAD 315
+ D + L E+ +E ++ F+ ++I + + E + AW+ +
Sbjct: 391 RMAVINEKLQPSDAEYRPLIDFELHREKIDAFKEEYIYKNMREVEGRDGLFDAWIRAVDS 450
Query: 316 HS 317
++
Sbjct: 451 YA 452
>gi|401837317|gb|EJT41261.1| PUS2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 389
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 102/329 (31%), Positives = 151/329 (45%), Gaps = 81/329 (24%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
M+ Y G GY+G+Q N +TIEG+I+ L + G ++E + + P+ F
Sbjct: 20 MLLGYRGSGYYGMQY----------NPPHRTIEGEILAKLLEVGAISEKNSSAPKKNSFM 69
Query: 63 RAARTDKGVSALKQIVSLKLP-EEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
AARTDKGV A+ ++SLK+ +E +N LP +IR+ I+ K FN+++ C +R
Sbjct: 70 AAARTDKGVHAMLNLLSLKISLQEDTVAKLNAALPPEIRVWGIQPANKNFNARSACGSRW 129
Query: 122 YSYTCPTYAFATP-------------------QDTKDDF------RLTPDQFNFLQ---- 152
Y Y P +A P Q+ D F R + D+ LQ
Sbjct: 130 YEYLVPDFALIGPPRSSSLYQIVGGCYREDGSQEVWDAFLEQARRRFSGDELYRLQDTAQ 189
Query: 153 ----------------------------------ALLKQYEGTHNFHNFTSKRKPLDPSC 178
A +K+Y GTHNF+NFT+ + DPS
Sbjct: 190 KPCEDDPLMQDYVGLLSAALNNYRLPSSKLHALEAAMKEYVGTHNFYNFTTGKLSGDPSA 249
Query: 179 SRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTF- 237
R+I E + I+++I GQSFMLHQIR+MV +A+ + R L+ F
Sbjct: 250 QRHIK----EVVVTQTSSRWISVRIHGQSFMLHQIRRMVALAVIVVRCQLPPSLVRNHFA 305
Query: 238 -GLDQFDLPMAPGLGLLLEQVHYDLYNQK 265
G+ ++ +P AP GLLLE +D YN K
Sbjct: 306 AGVRKY-IPRAPAQGLLLEGPVFDQYNTK 333
>gi|393221799|gb|EJD07283.1| pseudouridine synthase [Fomitiporia mediterranea MF3/22]
Length = 502
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 100/320 (31%), Positives = 148/320 (46%), Gaps = 72/320 (22%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ + G GY G+Q + KTIEG + +AL AG V++D+ + P +
Sbjct: 61 ALLIGFCGSGYKGMQIQ----------PSEKTIEGVLFKALVNAGAVSKDNADDPVKVGL 110
Query: 62 QRAARTDKGVSALKQIVSLKL-------PEEANKEAINEHLPEQIRILSIKRVTKGFNSK 114
QRAARTD GV A +VS+K+ P+ + INE LP +IR+ S +RV FN++
Sbjct: 111 QRAARTDAGVHAAGNVVSMKIITHVPGIPDLVQR--INEELPPEIRLWSFQRVQNSFNAR 168
Query: 115 NNCNARTYSYTCPTYAFATPQDT------------------------------------- 137
R Y+Y P+Y P+ T
Sbjct: 169 ----IRRYTYFFPSYLLIPPKPTSAFYQSFIRQSSSTSSPSASSSTIQVDPFWENAPPEV 224
Query: 138 --------KDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQ 189
K +R+ ++ L+ K +EGTHNFHNFT R D SC R++ +
Sbjct: 225 TREEEMVRKKSWRVGKEKIEALREAAKHFEGTHNFHNFTVGRDTKDRSCFRHMKKIEVAD 284
Query: 190 PFVKDGLELITLKIKGQSFMLHQI----RKMVGVAMAIARGFTSKDLIEKTFGLDQFDLP 245
P V E I++ + GQSFMLHQ+ RKM+ V + R T ++I FG +P
Sbjct: 285 PVVYGETEWISVMLHGQSFMLHQVGGLQRKMMCVLVMSVRTGTPSNIINALFGPLNVVIP 344
Query: 246 MAPGLGLLLEQVHYDLYNQK 265
P LGLLLE ++ Y+++
Sbjct: 345 KMPSLGLLLENPIFESYSKR 364
>gi|426196564|gb|EKV46492.1| hypothetical protein AGABI2DRAFT_205761 [Agaricus bisporus var.
bisporus H97]
Length = 435
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 101/346 (29%), Positives = 164/346 (47%), Gaps = 61/346 (17%)
Query: 31 MKTIEGDIMEALFKAGFVTEDSFNTPQN----IQFQRAARTDKGVSALKQIVSLKL---- 82
+KTIEG + +AL +AG V++D+ N P + RAARTD GV A IVSLK+
Sbjct: 8 LKTIEGTLFKALVEAGAVSQDNANDPVKAKSFVALARAARTDAGVHAAGNIVSLKMIMHV 67
Query: 83 ---PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYA--------- 130
P+ + +NE LP +IR+ R FN++ C++R Y+Y P+Y
Sbjct: 68 PGIPDLVGR--VNELLPPEIRLWGYVRAQNSFNARLACDSRKYTYYFPSYLLIPPKPGSN 125
Query: 131 -----------------------FATPQDTKDD-------FRLTPDQFNFLQALLKQYEG 160
+ P +K+D +R+T D+ L+ +++ G
Sbjct: 126 LHRVLAQHAESLGHNGSILSHSFWDNPNSSKEDDMRRKRTWRVTQDRIADLRTAAQKFIG 185
Query: 161 THNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVA 220
THNFHNFT R D S R++ S + P E +++ GQSFMLHQ+RKM+
Sbjct: 186 THNFHNFTVGRDASDKSNMRHMKSIEIADPVTHGDTEWVSVLFHGQSFMLHQVRKMMSSL 245
Query: 221 MAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLY-------NQKYGQDG--M 271
+ R TS +++ + + +P P LGLLLE+ + Y N+K+ D
Sbjct: 246 VLSCRTNTSPNIVTELYKNPDAFIPKMPSLGLLLEEPIFASYNSRMNTVNEKHKPDSPDY 305
Query: 272 HESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHS 317
+ F ++NEF+ +FI + + E + AW+ ++ +++
Sbjct: 306 RPMIDFEPYRSQINEFKDQFIYKNMREIEDRDGLFDAWIRMVDNYA 351
>gi|397605213|gb|EJK58925.1| hypothetical protein THAOC_20915 [Thalassiosira oceanica]
Length = 551
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 106/392 (27%), Positives = 184/392 (46%), Gaps = 85/392 (21%)
Query: 10 VGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDK 69
+G+ G SKY F + N +T++ +I ALF++G ++ +F P + +ARTDK
Sbjct: 147 IGFLG--SKYSGFQV---NPAKRTLQAEIELALFRSGILSATNFGHPSKCGWSNSARTDK 201
Query: 70 GVSALKQIVSLK---------LPEEANKEA----INEHLPEQIRILSIKRVTKGFNSKNN 116
GV A Q+ S K + ++ E +N +LP I++L IKR T+ F S+
Sbjct: 202 GVHAASQVCSFKGEMICWNDQISQDEQLEKMRLIVNSNLPSDIQVLDIKRTTRSFCSRTA 261
Query: 117 CNARTYSYTCPTYAFATPQDTKD------------------------------------D 140
+ Y Y P++ P + K D
Sbjct: 262 RDKVRYQYMVPSFLLMPPDEVKRAFVDVKVEEFDRNDPEKNLNDVVKLEMLQNTRGFLAD 321
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGL---- 196
+R++ +Q L+ L +EGT +FHN+T K D S SR+IM F P + GL
Sbjct: 322 YRVSNEQVENLRKSLAIFEGTKSFHNYTRKLSSSDASTSRFIMKFASLDPVIMPGLTNED 381
Query: 197 -------ELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQF-DLPMAP 248
+ + ++I GQSF+L+QIRKMV A+ +ARG + + IE++F + +AP
Sbjct: 382 GSKSPDSQWVPVQITGQSFLLNQIRKMVSAAVDLARGAVTHEQIEQSFSRQNLMKVDVAP 441
Query: 249 GLGLLLEQVHYDLYNQ-------KYGQDGM-HESLHFHEVD--------KEVNEFRHKFI 292
GL L++ +++YN+ K G + + ++L + E + K + ++ I
Sbjct: 442 AQGLFLDRSSFEMYNEHKVKNAAKNGGESVDRDTLDWFEAEGKELSPAVKRTEKLKNNTI 501
Query: 293 LPYLVKTEITEKPMLAWL---ELLADHSFETR 321
+P++VK E E + +L ++L + +++ R
Sbjct: 502 IPHIVKEETEEGNFVKYLYTHDVLFNDTYQIR 533
>gi|169849317|ref|XP_001831362.1| pseudouridylate synthase [Coprinopsis cinerea okayama7#130]
gi|116507630|gb|EAU90525.1| pseudouridylate synthase [Coprinopsis cinerea okayama7#130]
Length = 568
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 108/368 (29%), Positives = 167/368 (45%), Gaps = 75/368 (20%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ + G GY G+Q + + +KTIEG + +AL K G V++D+ + P +
Sbjct: 137 ALLIGFCGSGYSGMQIQPM--------DSVKTIEGVLFQALVKVGAVSQDNADDPVKVAL 188
Query: 62 QRAARTDKGVSALKQIVSLKL-------PEEANKEAINEHLPEQIRILSIKRVTKGFNSK 114
RAARTD GV A +VS+K+ P+ A+NE LP +IR R FN++
Sbjct: 189 ARAARTDAGVHAAGNVVSMKMISTIPGVPDLV--AAVNEQLPPEIRFWGFVRTQNSFNAR 246
Query: 115 NNCNARTYSYTCPTYAFATPQ-----------------DT-------------------- 137
R Y+Y P+Y P+ DT
Sbjct: 247 ----FRKYTYFFPSYLLIPPKPGSGLDERLKAFNESLGDTVPRPIHPFWADAPGNSTKEE 302
Query: 138 ----KDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVK 193
K +R+ L+ ++YEGTHNFHNFT R D S R++ S E P V
Sbjct: 303 DLIRKRRWRVDSGPIERLRETARRYEGTHNFHNFTVGRDFKDRSNFRFMKSITIEDPVVY 362
Query: 194 DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLL 253
E I++ GQSFMLHQIRKM+ + R ++I++ + +Q +P P LGLL
Sbjct: 363 GETEWISVLFHGQSFMLHQIRKMMSGLVLSCRTGAPPEVIDQLYNEEQVFVPKMPSLGLL 422
Query: 254 LEQVHYDLYNQKYGQDGMHESLHFHEVD-----------KEVNEFRHKFILPYLVKTEIT 302
LE+ + YN + + ++ +L + D +++ EF+ KFI + + E
Sbjct: 423 LEEPLFTSYNSRVAK--INTNLKPEDADYRPPIDFDLHREKMAEFKEKFIYKNMREIEDR 480
Query: 303 EKPMLAWL 310
+ AW+
Sbjct: 481 DGLFDAWI 488
>gi|389745603|gb|EIM86784.1| pseudouridine synthase [Stereum hirsutum FP-91666 SS1]
Length = 613
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 95/322 (29%), Positives = 149/322 (46%), Gaps = 70/322 (21%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ + G G G+Q + ++TIEG + +AL +AG V++D+ + P +
Sbjct: 169 ALLIGFCGTGCNGMQIQ----------PNVRTIEGVLFDALVRAGAVSKDNADDPVKVNL 218
Query: 62 QRAARTDKGVSALKQIVSLKL-------PEEANKEAINEHLPEQIRILSIKRVTKGFNSK 114
RAARTD GV A +VS+K+ P+ K +NE LP +IR+ RV FN++
Sbjct: 219 GRAARTDAGVHAAGNVVSIKIITQIPGVPDVVAK--VNELLPPEIRLWGYVRVQNSFNAR 276
Query: 115 NNCNARTYSYTCPTYAFATPQ--------------------------------------- 135
+C++R Y+Y P+Y P+
Sbjct: 277 LSCDSRKYTYFFPSYLLIPPKPGSGLHKTLSAQASSPSTSPTPTSLFAHPFWSEQSSDEG 336
Query: 136 --DTKDD----------FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIM 183
KD+ +R+ D L+ +++E THNFHNFT R+ D S R++
Sbjct: 337 NPSIKDEKEQDLKRKRTWRVGADMMEKLRETARKFEATHNFHNFTVGREFGDRSTQRHMK 396
Query: 184 SFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFD 243
+ P V E +++ GQSFMLHQ+RKM+ + R T +I++ +G
Sbjct: 397 KIEIADPAVYGETEWVSVMFHGQSFMLHQVRKMMAALVLSVRTGTPAHVIDELYGPRDVF 456
Query: 244 LPMAPGLGLLLEQVHYDLYNQK 265
+P P LGLLLE +D YN+K
Sbjct: 457 IPKMPSLGLLLEHPIFDSYNRK 478
>gi|349578160|dbj|GAA23326.1| K7_Pus2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 370
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 150/329 (45%), Gaps = 81/329 (24%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
M+ Y G GY+G+Q N KTIEG+I+ LF G ++E++ P+ F
Sbjct: 1 MLLGYCGSGYYGMQY----------NPPHKTIEGEILTKLFDVGAISEENSLAPKKNSFM 50
Query: 63 RAARTDKGVSALKQIVSLKLP-EEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
AARTDKGV A+ ++SLK+ E +N LP +IR+ I+ V K FN+++ C++R
Sbjct: 51 AAARTDKGVHAMLNLLSLKITLREDTVAKLNAALPPEIRVWGIQPVNKKFNARSACDSRW 110
Query: 122 YSYTCPTYAFATP-------------------QDTKDDF------RLTPDQFNFLQ---- 152
Y Y P + P Q+ D F R + D+ LQ
Sbjct: 111 YQYLIPEFILIGPPRSSLLHRNVGGCYREDGSQEVWDTFLEQTRGRFSGDELCRLQDTAQ 170
Query: 153 ----------------------------------ALLKQYEGTHNFHNFTSKRKPLDPSC 178
A +++Y GTHNFHNFT+ + DPS
Sbjct: 171 KLSESDPLVQEYVGLLSGTLSGYCLPPSKLDAFEAAMQEYVGTHNFHNFTTGKLWGDPSA 230
Query: 179 SRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTF- 237
R+I Q G I ++I GQSFMLHQIR+MV +A+ AR +++ F
Sbjct: 231 QRHIKKVVVSQ--ASPG--WICVRIHGQSFMLHQIRRMVALAVLAARCQLPPNIVRNYFN 286
Query: 238 -GLDQFDLPMAPGLGLLLEQVHYDLYNQK 265
G ++ +P AP GLLLE +D YN K
Sbjct: 287 AGPRKY-IPRAPAQGLLLEGPVFDGYNTK 314
>gi|1322568|emb|CAA96766.1| PUS2 [Saccharomyces cerevisiae]
Length = 370
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 150/329 (45%), Gaps = 81/329 (24%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
M+ Y G GY+G+Q N KTIEG+I+ LF G ++E++ P+ F
Sbjct: 1 MLLGYCGSGYYGMQY----------NPPHKTIEGEILTKLFDVGAISEENSLAPKKNSFM 50
Query: 63 RAARTDKGVSALKQIVSLKLP-EEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
AARTDKGV A+ ++SLK+ E +N LP +IR+ I+ V K FN+++ C++R
Sbjct: 51 AAARTDKGVHAMLNLLSLKITLREDTVAKLNAALPPEIRVWGIQPVNKKFNARSACDSRW 110
Query: 122 YSYTCPTYAFATP-------------------QDTKDDF------RLTPDQFNFLQ---- 152
Y Y P + P Q+ D F R + D+ LQ
Sbjct: 111 YQYLIPEFILIGPPRSSLLHRNVGGSYREDGSQEVWDTFLEQTRGRFSGDELCRLQDTAQ 170
Query: 153 ----------------------------------ALLKQYEGTHNFHNFTSKRKPLDPSC 178
A +++Y GTHNFHNFT+ + DPS
Sbjct: 171 KLSESDPLVQDYVGLLSGTLSGYCLSPSKLDAFEAAMQEYVGTHNFHNFTTGKLWGDPSA 230
Query: 179 SRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTF- 237
R+I Q G I ++I GQSFMLHQIR+MV +A+ AR +++ F
Sbjct: 231 QRHIKKVVVSQ--ASPG--WICVRIHGQSFMLHQIRRMVALAVLAARCQLPPNIVRNYFN 286
Query: 238 -GLDQFDLPMAPGLGLLLEQVHYDLYNQK 265
G ++ +P AP GLLLE +D YN K
Sbjct: 287 AGPRKY-IPRAPAQGLLLEGPVFDGYNTK 314
>gi|151943741|gb|EDN62051.1| pseudouridine synthase [Saccharomyces cerevisiae YJM789]
gi|190407023|gb|EDV10290.1| pseudouridine synthase [Saccharomyces cerevisiae RM11-1a]
gi|256269708|gb|EEU04978.1| Pus2p [Saccharomyces cerevisiae JAY291]
gi|259146442|emb|CAY79699.1| Pus2p [Saccharomyces cerevisiae EC1118]
gi|323333685|gb|EGA75078.1| Pus2p [Saccharomyces cerevisiae AWRI796]
gi|323348667|gb|EGA82910.1| Pus2p [Saccharomyces cerevisiae Lalvin QA23]
gi|323354937|gb|EGA86768.1| Pus2p [Saccharomyces cerevisiae VL3]
gi|365765568|gb|EHN07075.1| Pus2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 370
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 150/329 (45%), Gaps = 81/329 (24%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
M+ Y G GY+G+Q N KTIEG+I+ LF G ++E++ P+ F
Sbjct: 1 MLLGYCGSGYYGMQY----------NPPHKTIEGEILTKLFDVGAISEENSLAPKKNSFM 50
Query: 63 RAARTDKGVSALKQIVSLKLP-EEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
AARTDKGV A+ ++SLK+ E +N LP +IR+ I+ V K FN+++ C++R
Sbjct: 51 AAARTDKGVHAMLNLLSLKITLREDTVAKLNAALPPEIRVWGIQPVNKKFNARSACDSRW 110
Query: 122 YSYTCPTYAFATP-------------------QDTKDDF------RLTPDQFNFLQ---- 152
Y Y P + P Q+ D F R + D+ LQ
Sbjct: 111 YQYLIPEFILIGPPRSSLLHRNVGGCYREDGSQEVWDTFLEQTRGRFSGDELCRLQDTAQ 170
Query: 153 ----------------------------------ALLKQYEGTHNFHNFTSKRKPLDPSC 178
A +++Y GTHNFHNFT+ + DPS
Sbjct: 171 KLSESDPLVQDYVGLLSGTLSGYCLPPSKLDAFEAAMQEYVGTHNFHNFTTGKLWGDPSA 230
Query: 179 SRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTF- 237
R+I Q G I ++I GQSFMLHQIR+MV +A+ AR +++ F
Sbjct: 231 QRHIKKVVVSQ--ASPG--WICVRIHGQSFMLHQIRRMVALAVLAARCQLPPNIVRNYFN 286
Query: 238 -GLDQFDLPMAPGLGLLLEQVHYDLYNQK 265
G ++ +P AP GLLLE +D YN K
Sbjct: 287 AGPRKY-IPRAPAQGLLLEGPVFDGYNTK 314
>gi|207345339|gb|EDZ72195.1| YGL063Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 330
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 150/329 (45%), Gaps = 81/329 (24%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
M+ Y G GY+G+Q N KTIEG+I+ LF G ++E++ P+ F
Sbjct: 1 MLLGYCGSGYYGMQY----------NPPHKTIEGEILTKLFDVGAISEENSLAPKKNSFM 50
Query: 63 RAARTDKGVSALKQIVSLKLP-EEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
AARTDKGV A+ ++SLK+ E +N LP +IR+ I+ V K FN+++ C++R
Sbjct: 51 AAARTDKGVHAMLNLLSLKITLREDTVAKLNAALPPEIRVWGIQPVNKKFNARSACDSRW 110
Query: 122 YSYTCPTYAFATP-------------------QDTKDDF------RLTPDQFNFLQ---- 152
Y Y P + P Q+ D F R + D+ LQ
Sbjct: 111 YQYLIPEFILIGPPRSSLLHRNVGGCYREDGSQEVWDTFLEQTRGRFSGDELCRLQDTAQ 170
Query: 153 ----------------------------------ALLKQYEGTHNFHNFTSKRKPLDPSC 178
A +++Y GTHNFHNFT+ + DPS
Sbjct: 171 KLSESDPLVQDYVGLLSGTLSGYCLPPSKLDAFEAAMQEYVGTHNFHNFTTGKLWGDPSA 230
Query: 179 SRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTF- 237
R+I Q G I ++I GQSFMLHQIR+MV +A+ AR +++ F
Sbjct: 231 QRHIKKVVVSQ--ASPG--WICVRIHGQSFMLHQIRRMVALAVLAARCQLPPNIVRNYFN 286
Query: 238 -GLDQFDLPMAPGLGLLLEQVHYDLYNQK 265
G ++ +P AP GLLLE +D YN K
Sbjct: 287 AGPRKY-IPRAPAQGLLLEGPVFDGYNTK 314
>gi|398364673|ref|NP_011452.4| pseudouridine synthase PUS2 [Saccharomyces cerevisiae S288c]
gi|347595823|sp|P53167.4|PUS2_YEAST RecName: Full=tRNA pseudouridine(27/28) synthase; AltName:
Full=tRNA pseudouridine synthase 2; AltName: Full=tRNA
pseudouridylate synthase 2; AltName: Full=tRNA-uridine
isomerase 2
gi|1403093|emb|CAA56699.1| pseudouridine synthase 2 [Saccharomyces cerevisiae]
gi|329138894|tpg|DAA08039.2| TPA: pseudouridine synthase PUS2 [Saccharomyces cerevisiae S288c]
gi|392299198|gb|EIW10292.1| Pus2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 370
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 150/329 (45%), Gaps = 81/329 (24%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
M+ Y G GY+G+Q N KTIEG+I+ LF G ++E++ P+ F
Sbjct: 1 MLLGYCGSGYYGMQY----------NPPHKTIEGEILTKLFDVGAISEENSLAPKKNSFM 50
Query: 63 RAARTDKGVSALKQIVSLKLP-EEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
AARTDKGV A+ ++SLK+ E +N LP +IR+ I+ V K FN+++ C++R
Sbjct: 51 AAARTDKGVHAMLNLLSLKITLREDTVAKLNAALPPEIRVWGIQPVNKKFNARSACDSRW 110
Query: 122 YSYTCPTYAFATP-------------------QDTKDDF------RLTPDQFNFLQ---- 152
Y Y P + P Q+ D F R + D+ LQ
Sbjct: 111 YQYLIPEFILIGPPRSSLLHRNVGGCYREDGSQEVWDTFLEQTRGRFSGDELCRLQDTAQ 170
Query: 153 ----------------------------------ALLKQYEGTHNFHNFTSKRKPLDPSC 178
A +++Y GTHNFHNFT+ + DPS
Sbjct: 171 KLSESDPLVQDYVGLLSGTLSGYCLSPSKLDAFEAAMQEYVGTHNFHNFTTGKLWGDPSA 230
Query: 179 SRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTF- 237
R+I Q G I ++I GQSFMLHQIR+MV +A+ AR +++ F
Sbjct: 231 QRHIKKVVVSQ--ASPG--WICVRIHGQSFMLHQIRRMVALAVLAARCQLPPNIVRNYFN 286
Query: 238 -GLDQFDLPMAPGLGLLLEQVHYDLYNQK 265
G ++ +P AP GLLLE +D YN K
Sbjct: 287 AGPRKY-IPRAPAQGLLLEGPVFDGYNTK 314
>gi|323337610|gb|EGA78855.1| Pus2p [Saccharomyces cerevisiae Vin13]
Length = 406
Score = 147 bits (371), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 150/329 (45%), Gaps = 81/329 (24%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
M+ Y G GY+G+Q N KTIEG+I+ LF G ++E++ P+ F
Sbjct: 1 MLLGYCGSGYYGMQY----------NPPHKTIEGEILTKLFDVGAISEENSLAPKKNSFM 50
Query: 63 RAARTDKGVSALKQIVSLKLP-EEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
AARTDKGV A+ ++SLK+ E +N LP +IR+ I+ V K FN+++ C++R
Sbjct: 51 AAARTDKGVHAMLNLLSLKITLREDTVAKLNAALPPEIRVWGIQPVNKKFNARSACDSRW 110
Query: 122 YSYTCPTYAFATP-------------------QDTKDDF------RLTPDQFNFLQ---- 152
Y Y P + P Q+ D F R + D+ LQ
Sbjct: 111 YQYLIPEFILIGPPRSSLLHRNVGGCYREDGSQEVWDTFLEQTRGRFSGDELCRLQDTAQ 170
Query: 153 ----------------------------------ALLKQYEGTHNFHNFTSKRKPLDPSC 178
A +++Y GTHNFHNFT+ + DPS
Sbjct: 171 KLSESDPLVQDYVGLLSGTLSGYCLPPSKLDAFEAAMQEYVGTHNFHNFTTGKLWGDPSA 230
Query: 179 SRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTF- 237
R+I Q G I ++I GQSFMLHQIR+MV +A+ AR +++ F
Sbjct: 231 QRHIKKVVVSQ--ASPG--WICVRIHGQSFMLHQIRRMVALAVLAARCQLPPNIVRNYFN 286
Query: 238 -GLDQFDLPMAPGLGLLLEQVHYDLYNQK 265
G ++ +P AP GLLLE +D YN K
Sbjct: 287 AGPRKY-IPRAPAQGLLLEGPVFDGYNTK 314
>gi|323305032|gb|EGA58786.1| Pus2p [Saccharomyces cerevisiae FostersB]
Length = 370
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 149/329 (45%), Gaps = 81/329 (24%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
M+ Y G GY+G+Q N KTIEG+I+ LF G ++E++ P+ F
Sbjct: 1 MLLGYCGSGYYGMQY----------NPPHKTIEGEILTKLFDVGAISEENSLAPKKNSFM 50
Query: 63 RAARTDKGVSALKQIVSLKLP-EEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
AARTDKGV A+ ++SLK+ E +N LP +IR+ I+ V K FN+++ C++R
Sbjct: 51 AAARTDKGVHAMLNLLSLKITLREDTVAKLNAALPPEIRVWGIQPVNKKFNARSACDSRW 110
Query: 122 YSYTCPTYAFATP-------------------QDTKDDF------RLTPDQFNFLQ---- 152
Y Y P + P Q+ D F R + D+ LQ
Sbjct: 111 YQYLIPEFILIGPPRSSLLHRNVGGCYREDGSQEVWDTFLEQTRGRFSGDELCRLQDTAQ 170
Query: 153 ----------------------------------ALLKQYEGTHNFHNFTSKRKPLDPSC 178
A ++ Y GTHNFHNFT+ + DPS
Sbjct: 171 KLSESDPLVQDYVGLLSGTLSGYCLPPSKLDAFEAAMQDYVGTHNFHNFTTGKLWGDPSA 230
Query: 179 SRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTF- 237
R+I Q G I ++I GQSFMLHQIR+MV +A+ AR +++ F
Sbjct: 231 QRHIKKVVVSQ--ASPG--WICVRIHGQSFMLHQIRRMVALAVLAARCQLPPNIVRNYFN 286
Query: 238 -GLDQFDLPMAPGLGLLLEQVHYDLYNQK 265
G ++ +P AP GLLLE +D YN K
Sbjct: 287 AGPRKY-IPRAPAQGLLLEGPVFDGYNTK 314
>gi|365760751|gb|EHN02448.1| Pus2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 336
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 98/319 (30%), Positives = 146/319 (45%), Gaps = 81/319 (25%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
M+ Y G GY+G+Q N +TIEG+I+ L + G ++E + + P+ F
Sbjct: 20 MLLGYRGSGYYGMQY----------NPPHRTIEGEILAKLLEVGAISEKNSSAPKKNSFM 69
Query: 63 RAARTDKGVSALKQIVSLKLP-EEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
AARTDKGV A+ ++SLK+ +E +N LP +IR+ I+ K FN+++ C +R
Sbjct: 70 AAARTDKGVHAMLNLLSLKISLQEDTVAKLNAALPPEIRVWGIQPANKNFNARSACGSRW 129
Query: 122 YSYTCPTYAFATP-------------------QDTKDDF------RLTPDQFNFLQ---- 152
Y Y P +A P Q+ D F R + D+ LQ
Sbjct: 130 YEYLVPDFALIGPPRSSSLYQIVGECYREDGSQEVWDAFLEQARGRFSGDELYRLQDTAQ 189
Query: 153 ----------------------------------ALLKQYEGTHNFHNFTSKRKPLDPSC 178
A +K+Y GTHNF+NFT+ + DPS
Sbjct: 190 KPCEDDPLMQDYVGLLSAALNNYRLPSSKLHALEAAMKEYVGTHNFYNFTTGKLSGDPSA 249
Query: 179 SRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTF- 237
R+I Q + I+++I GQSFMLHQIR+MV +A+ + R L+ F
Sbjct: 250 QRHIKEVVVTQTSSR----WISVRIHGQSFMLHQIRRMVALAVIVVRCQLPPSLVRNHFA 305
Query: 238 -GLDQFDLPMAPGLGLLLE 255
G+ ++ +P AP GLLLE
Sbjct: 306 AGVRKY-IPRAPAQGLLLE 323
>gi|357480141|ref|XP_003610356.1| tRNA pseudouridine synthase [Medicago truncatula]
gi|355511411|gb|AES92553.1| tRNA pseudouridine synthase [Medicago truncatula]
Length = 530
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 71/166 (42%), Positives = 101/166 (60%), Gaps = 3/166 (1%)
Query: 154 LLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQI 213
+LK Y GTHNFHNFT++ KP DPS R+I+SFD V +G+E + +I GQSFMLHQI
Sbjct: 334 ILKCYVGTHNFHNFTTRIKPEDPSAKRFIISFDASTTVVVEGMEFVKCEIVGQSFMLHQI 393
Query: 214 RKMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMH 272
RKM+G+A+AI R + LIEK D +P AP +GL L++ + YNQK+ H
Sbjct: 394 RKMMGLAVAIMRNCAPESLIEKALQKDVSITVPTAPEVGLYLDECFFTSYNQKWKD--TH 451
Query: 273 ESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF 318
E + +KE +F+ ++I P++ TE E + WL L ++
Sbjct: 452 EEVSMKAYEKEAEDFKMQYIYPHIASTEYKEGTVGLWLHSLNHRNY 497
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 77/133 (57%), Gaps = 12/133 (9%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ FAY GVGY G+Q +N G KTIEG++ EAL+ +G V E +
Sbjct: 56 VAIFFAYCGVGYQGMQ----------KNPGAKTIEGELEEALYVSGAVPEQDRGLSKRYD 105
Query: 61 FQRAARTDKGVSALKQIVSLK--LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ R+ARTDKGVSA+ Q+VS + + + +N +LP QIRI KRVT F++K C+
Sbjct: 106 WARSARTDKGVSAVGQVVSGRFYIDPPGFVDRLNSNLPSQIRIFGFKRVTASFSAKKFCD 165
Query: 119 ARTYSYTCPTYAF 131
R Y Y P +A
Sbjct: 166 RRRYVYLIPVFAL 178
>gi|357480149|ref|XP_003610360.1| tRNA pseudouridine synthase [Medicago truncatula]
gi|355511415|gb|AES92557.1| tRNA pseudouridine synthase [Medicago truncatula]
gi|388510220|gb|AFK43176.1| unknown [Medicago truncatula]
Length = 530
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 71/166 (42%), Positives = 101/166 (60%), Gaps = 3/166 (1%)
Query: 154 LLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQI 213
+LK Y GTHNFHNFT++ KP DPS R+I+SFD V +G+E + +I GQSFMLHQI
Sbjct: 334 ILKCYVGTHNFHNFTTRIKPEDPSAKRFIISFDASTTVVVEGMEFVKCEIVGQSFMLHQI 393
Query: 214 RKMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMH 272
RKM+G+A+AI R + LIEK D +P AP +GL L++ + YNQK+ H
Sbjct: 394 RKMMGLAVAIMRNCAPESLIEKALQKDVSITVPTAPEVGLYLDECFFTSYNQKWKD--TH 451
Query: 273 ESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF 318
E + +KE +F+ ++I P++ TE E + WL L ++
Sbjct: 452 EEVSMKAYEKEAEDFKMQYIYPHIASTEYKEGTVGLWLHSLNHRNY 497
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 77/133 (57%), Gaps = 12/133 (9%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ FAY GVGY G+Q +N G KTIEG++ EAL+ +G V E +
Sbjct: 56 VAIFFAYCGVGYQGMQ----------KNPGAKTIEGELEEALYVSGAVPEQDRGLSKRYD 105
Query: 61 FQRAARTDKGVSALKQIVSLK--LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ R+ARTDKGVSA+ Q+VS + + + +N +LP QIRI KRVT F++K C+
Sbjct: 106 WARSARTDKGVSAVGQVVSGRFYIDPPGFVDRLNSNLPSQIRIFGFKRVTASFSAKKFCD 165
Query: 119 ARTYSYTCPTYAF 131
R Y Y P +A
Sbjct: 166 RRRYVYLIPVFAL 178
>gi|217074404|gb|ACJ85562.1| unknown [Medicago truncatula]
gi|388491044|gb|AFK33588.1| unknown [Medicago truncatula]
Length = 530
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 71/166 (42%), Positives = 101/166 (60%), Gaps = 3/166 (1%)
Query: 154 LLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQI 213
+LK Y GTHNFHNFT++ KP DPS R+I+SFD V +G+E + +I GQSFMLHQI
Sbjct: 334 ILKCYVGTHNFHNFTTRIKPEDPSAKRFIISFDASTTVVVEGMEFVKCEIVGQSFMLHQI 393
Query: 214 RKMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMH 272
RKM+G+A+AI R + LIEK D +P AP +GL L++ + YNQK+ H
Sbjct: 394 RKMMGLAVAIMRNCAPESLIEKALQKDVSITVPTAPEVGLYLDECFFTSYNQKWKD--TH 451
Query: 273 ESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF 318
E + +KE +F+ ++I P++ TE E + WL L ++
Sbjct: 452 EEVSMKAYEKEAEDFKMQYIYPHIASTEYKEGTVGLWLHSLNHRNY 497
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 77/133 (57%), Gaps = 12/133 (9%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ FAY GVGY G+Q +N G KTIEG++ EAL+ +G V E +
Sbjct: 56 VAIFFAYCGVGYQGMQ----------KNPGAKTIEGELEEALYVSGAVPEQDRGLSKRYD 105
Query: 61 FQRAARTDKGVSALKQIVSLK--LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ R+ARTDKGVSA+ Q+VS + + + +N +LP QIRI KRVT F++K C+
Sbjct: 106 WARSARTDKGVSAVGQVVSGRFYIDPPGFVDRLNSNLPSQIRIFGFKRVTASFSAKKFCD 165
Query: 119 ARTYSYTCPTYAF 131
R Y Y P +A
Sbjct: 166 RRRYVYLIPVFAL 178
>gi|145545961|ref|XP_001458664.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124426485|emb|CAK91267.1| unnamed protein product [Paramecium tetraurelia]
Length = 351
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 103/344 (29%), Positives = 164/344 (47%), Gaps = 54/344 (15%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ + F Y+G Y GLQ + + +T+E + +AL + + E + N
Sbjct: 10 VLLTFGYNGANYHGLQIQ--------KGVEFETVESKLFQALKDSNLIMEQNANDLSKSG 61
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKE------------------------------A 90
+ R ARTDKGV AL +++KL NKE
Sbjct: 62 WSRGARTDKGVHALCNSIAVKLC--INKEFFKDEIQQNEEEIVSKLRDKQKVDYSKVLNV 119
Query: 91 INEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNF 150
IN +LP I++ SIK VT+GF+ + N R Y Y P ++ D K + L
Sbjct: 120 INSNLPNDIKVHSIKLVTQGFDVRKNARYRFYEYIAPVSIYS---DKKGEEILEK----- 171
Query: 151 LQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFML 210
+ L+K++ GTHNFHN++ K DP RYI+S E +D E I GQSF+
Sbjct: 172 VSNLVKKFVGTHNFHNYSRGMKYTDPQSMRYILSIQVELFKCQDR-EFFKFLIHGQSFIY 230
Query: 211 HQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDG 270
HQIRKM+G+ + I + I+ TF +Q + +AP GL L ++ ++ YN K+
Sbjct: 231 HQIRKMMGIVIQIFQEELPDTFIDNTFFKNQLRIILAPAEGLFLNRISFEGYNTKF---D 287
Query: 271 MHESLHFHEVDK-EVNEFRHKFILPYLVKTEITEKPMLAWLELL 313
+ + L E D+ ++++FR I+ ++ + EI + WL++L
Sbjct: 288 IPQRLEIEEEDQIKIDQFRPT-IVDFICEQEIKNQTFTNWLKIL 330
>gi|357480137|ref|XP_003610354.1| tRNA pseudouridine synthase [Medicago truncatula]
gi|355511409|gb|AES92551.1| tRNA pseudouridine synthase [Medicago truncatula]
Length = 361
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/166 (42%), Positives = 101/166 (60%), Gaps = 3/166 (1%)
Query: 154 LLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQI 213
+LK Y GTHNFHNFT++ KP DPS R+I+SFD V +G+E + +I GQSFMLHQI
Sbjct: 165 ILKCYVGTHNFHNFTTRIKPEDPSAKRFIISFDASTTVVVEGMEFVKCEIVGQSFMLHQI 224
Query: 214 RKMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMH 272
RKM+G+A+AI R + LIEK D +P AP +GL L++ + YNQK+ H
Sbjct: 225 RKMMGLAVAIMRNCAPESLIEKALQKDVSITVPTAPEVGLYLDECFFTSYNQKWKD--TH 282
Query: 273 ESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF 318
E + +KE +F+ ++I P++ TE E + WL L ++
Sbjct: 283 EEVSMKAYEKEAEDFKMQYIYPHIASTEYKEGTVGLWLHSLNHRNY 328
>gi|219120809|ref|XP_002185636.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209582485|gb|ACI65106.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 293
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 94/302 (31%), Positives = 140/302 (46%), Gaps = 50/302 (16%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ AY G Y G Q N G +T + + A+ + + +F +P +
Sbjct: 2 LLAYVGTNYGGFQI----------NDGQRTPQAEFELAMLRTRLLLPCNFGSPHKYSWST 51
Query: 64 AARTDKGVSALKQIVSLK---LPEEANKEA---INEHLPEQIRILSIKRVTKGFNSKNNC 117
+ RTDKGV A Q+VS K LP++ E +N LP+ +R+L + R T+ F +K
Sbjct: 52 SGRTDKGVHACAQVVSAKVELLPDQTMAEVRDEMNTVLPDDVRVLDVVRTTRNFCAKTQR 111
Query: 118 NARTYSYTCPTYAFA--------------------------TPQDTKD------DFRLTP 145
+ Y Y P++ FA P++ K DFR P
Sbjct: 112 DRVRYQYMIPSFVFADADTLRVLFKDVVGHSNRGQSKAELLLPEELKSIQSALKDFRANP 171
Query: 146 DQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV-KDGLELITLKIK 204
LQ L+ YEGTH FHNF+ K + +RYI F E+P V +G+E I ++
Sbjct: 172 MHIAKLQEALQVYEGTHAFHNFSRGVKANEARAARYIERFHVEEPIVFPNGVEWIPTQVL 231
Query: 205 GQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQ-FDLPMAPGLGLLLEQVHYDLYN 263
GQSF+L+QIRKMV +AM +ARG + + + +AP GL LE +Y YN
Sbjct: 232 GQSFLLNQIRKMVCMAMDVARGVVPLTNVSRALERQSDVRINVAPAQGLFLEMSYYGGYN 291
Query: 264 QK 265
++
Sbjct: 292 RR 293
>gi|378755904|gb|EHY65929.1| hypothetical protein NERG_00625 [Nematocida sp. 1 ERTm2]
Length = 316
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 98/330 (29%), Positives = 167/330 (50%), Gaps = 35/330 (10%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ Y+G+GY G Q N+ KTIE + + ++ ++++ + +
Sbjct: 6 VALIIGYNGIGYKGSQI----------NKDEKTIEKTVCDEIYGLKYISDRNAEDYSKVG 55
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEAN-----KEAINEHLPEQ-IRILSIKRVTKGFNSK 114
QR++RTDKGV A ++SL++ + + + E LP I + I TK F++K
Sbjct: 56 LQRSSRTDKGVHAAMLVLSLRIETDNRSISDLERELKEILPRHNITLHRIVETTKNFDAK 115
Query: 115 NNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
N C +R Y Y P A+ D +D D F LK+ +GTHNFHNFT+ +
Sbjct: 116 NRCESRVYEYFVPLSAYTQESDAPEDITRKKDIF---MESLKKMQGTHNFHNFTATNQEK 172
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVA-MAIARGFTSKDL- 232
P R+I + E+ ++ DG++ + + GQSFM+HQIRKM+G A +A R T D+
Sbjct: 173 GP--KRFIKKIEVEE-YLSDGIKWCRVLLHGQSFMIHQIRKMIGFATLAAQRIQTVGDVQ 229
Query: 233 --IEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQD-GMHESLHFHEVDKEVNEFRH 289
++K ++ ++P PG LLL ++ YN+ +G G+ + + +E++
Sbjct: 230 EALDKVMSPEKVNIPKVPGELLLLSHSYFTNYNKNFGASRGVID-------NAGCDEYKL 282
Query: 290 KFILPYLVKTEITEKPMLAWLELLADHSFE 319
+ + P V T+ K W E++ HS E
Sbjct: 283 EHLYP-AVCTQENAKLFSDWQEVIDKHSEE 311
>gi|56758144|gb|AAW27212.1| unknown [Schistosoma japonicum]
Length = 223
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 119/207 (57%), Gaps = 16/207 (7%)
Query: 160 GTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGV 219
T +++FTS R P D SC R+I S +C F+ E ++I GQSFMLHQ+RKM+G+
Sbjct: 5 STQIYYHFTSGRLPTDKSCYRHIKSVECIPTFLLGEHEYTVIRIIGQSFMLHQVRKMIGL 64
Query: 220 AMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHE 279
+ I RG+ ++D+ + F ++ D+P APGLGL+L QV + YN+KY DG+H+ L + +
Sbjct: 65 VLGILRGYATEDVFDIVFCKERVDIPKAPGLGLMLNQVDFSYYNKKYQNDGIHQPLDWSK 124
Query: 280 VDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSFETRAAKAALA----AANGEEL 335
+ + NEF +++ ++ + E +K ML WL L H++ R + + + ++L
Sbjct: 125 YEDQRNEFMMQYVYQHIDQIETEDKSMLQWLATLNCHTYSFRDSSSPTIVDDKVSETDDL 184
Query: 336 QEV------------TDGEEEEDEEDR 350
Q V T+G+ + D+ D+
Sbjct: 185 QIVAIEETTLHTQSNTNGKRDYDDSDK 211
>gi|170586438|ref|XP_001897986.1| tRNA pseudouridine synthase family protein [Brugia malayi]
gi|158594381|gb|EDP32965.1| tRNA pseudouridine synthase family protein [Brugia malayi]
Length = 225
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 108/182 (59%), Gaps = 18/182 (9%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ AY G Y G+Q + + TIEG++ +A+ K G++ E+ +P F
Sbjct: 30 ALLLAYQGKKYNGMQVQ----------KDFPTIEGELFKAMAKCGYICENDVFSPVRFAF 79
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANK-------EAINEHLPEQIRILSIKRVTKGFNSK 114
QRAARTD+ VSA +Q+ S++L E ++ + +N HLPE+IR+L ++R T+ F +
Sbjct: 80 QRAARTDRSVSAARQMCSMRLAPENHEYFLKTATDKLNTHLPEEIRVLGVRRATRSFKAH 139
Query: 115 NNCNARTYSYTCPTYAFATPQD-TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKP 173
NC+ RTYSYT PTYAFA + T FR++ L LL Y+GTHNF N+TS R+
Sbjct: 140 KNCDKRTYSYTLPTYAFARADELTTSGFRMSETSIAELNDLLALYKGTHNFFNYTSGRRV 199
Query: 174 LD 175
D
Sbjct: 200 FD 201
>gi|399217632|emb|CCF74519.1| unnamed protein product [Babesia microti strain RI]
Length = 455
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 112/403 (27%), Positives = 182/403 (45%), Gaps = 77/403 (19%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
AM Y G GY+G Q + F + ++TIEG + AL + + + + Q + +
Sbjct: 52 AMYLGYLGTGYYGFQKQIAFGDRV--EETVETIEGTLERALIASNAIYPEFKHRLQKLGW 109
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAI-NEHLPEQIRILSIKRVTKGFNSKNNCNAR 120
+AARTDKGV A +V ++ + I NE+LP I + RVTKGF+++ C+ R
Sbjct: 110 SKAARTDKGVHAACMVVGCRMNIADDFLKIFNENLPGNIICYDVLRVTKGFDARALCSYR 169
Query: 121 TYSYTCPTY-----------------------------------------AFATP---QD 136
Y Y P Y F+ P
Sbjct: 170 NYEYIFPGYLLGKFEIPPQHLTFYQSCCEMVDRCAKCPKTSCYNRSQDNFVFSNPDKISS 229
Query: 137 TKD-DFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSF-----DCEQP 190
T D ++++T L+ + Y G+HNFHNF+S+ PL+P+ RYI S +C +
Sbjct: 230 TSDTNYQVTEQDIVSLETIFGDYVGSHNFHNFSSRINPLNPASYRYINSIKVSRVECMEN 289
Query: 191 FVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFG-LDQFDLPMAPG 249
FV+ + I+GQSF+ +QIRKM+ VA+ + RG K+ I+ L ++ AP
Sbjct: 290 FVR-------VSIQGQSFLFNQIRKMIAVAIEVFRGSAPKNAIKYCLNKLHSVNVNTAPA 342
Query: 250 LGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAW 309
GL L ++D YN + + F +V ++ +F + I P ++K + + W
Sbjct: 343 QGLFLHHPNFDTYNFHRASPPQTKHILFEDVKEQAMQFIKQRIYPEILKYDKWHE----W 398
Query: 310 LELLADHSF--ETRAAKAALAAANGEELQEVTDGEEEEDEEDR 350
LE + ++ F E A K L +V++ + E D D+
Sbjct: 399 LETINEYPFYWENHAHK----------LVKVSNSDGEIDTNDQ 431
>gi|212532769|ref|XP_002146541.1| tRNA pseudouridine synthase, putative [Talaromyces marneffei ATCC
18224]
gi|210071905|gb|EEA25994.1| tRNA pseudouridine synthase, putative [Talaromyces marneffei ATCC
18224]
Length = 571
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 126/235 (53%), Gaps = 13/235 (5%)
Query: 132 ATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDC-EQP 190
A Q+ K +R+ ++ +Q L +Y GT NFHN+T ++ DPS R I SF ++P
Sbjct: 334 AAYQNAKRAYRIPQNRLQRVQDALDKYIGTRNFHNYTIQKTFRDPSSKRIIKSFVANKEP 393
Query: 191 FVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGL 250
+ +G E ++LK+ GQSFM+HQIRKMV + I R +IE+++G + +P APGL
Sbjct: 394 IIINGTEWVSLKVHGQSFMMHQIRKMVAMVALIVRCGCDPKIIEESYGPTKLSIPKAPGL 453
Query: 251 GLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE---------- 300
GLLLE +D YN++ ++ E++ F + +KE+NEF+ + I + + E
Sbjct: 454 GLLLEHPIFDSYNKRAAKEFNRETIDFGKYEKEMNEFKQREIYDRIFREEEESNAFGVFF 513
Query: 301 --ITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEEDEEDRGGV 353
+ P +L L + ++A + GE +EV G E E EED G
Sbjct: 514 NHVDHYPANTFLYLTSAGIVASQAPDGPTKSQKGERAEEVLAGIESEPEEDASGA 568
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 88/172 (51%), Gaps = 21/172 (12%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M YSG GY G+Q + KTIEGD+ A AG +++ + P+
Sbjct: 77 VAVMIGYSGTGYHGMQL----------SPTEKTIEGDLFAAFVAAGAISKANAADPKKSS 126
Query: 61 FQRAARTDKGVSALKQIVSLKL----PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
R ARTD+GV A +VSLKL P+ K IN++L QIR+ + VTKGF+
Sbjct: 127 LVRCARTDRGVHAAGNVVSLKLIVEDPDIVQK--INDNLSPQIRVWGYETVTKGFSCYQL 184
Query: 117 CNARTYSYTCPTYAFATPQDT----KDDFRLTPDQFNFLQALLKQYEGTHNF 164
C++R Y Y PT+ F P + K +L + + ++ L + EG +F
Sbjct: 185 CDSRMYEYLIPTHCFLPPHPSTHLGKKTVQLAEENED-MEGFLARQEGVLDF 235
>gi|401625765|gb|EJS43758.1| pus2p [Saccharomyces arboricola H-6]
Length = 371
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 102/329 (31%), Positives = 150/329 (45%), Gaps = 80/329 (24%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
M+ Y G GY+G+Q N KTIEG+I+ LF+ G ++E + P+ F
Sbjct: 1 MLIGYRGTGYYGMQY----------NPPHKTIEGEILGKLFEVGAISEKNSLAPKKNSFM 50
Query: 63 RAARTDKGVSALKQIVSLKLP-EEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
AARTDKGV A+ ++SLK+ +E +N LP +IR+ I+ K FN+++ C++R
Sbjct: 51 AAARTDKGVHAMLNLLSLKISLQEDTVAKLNAALPPEIRVWGIQSANKKFNARSACDSRW 110
Query: 122 YSYTCPTYAF-ATPQDT-----------KDD--------------FRLTPDQFNFLQ--- 152
Y Y P + F PQD+ KDD R + ++ + LQ
Sbjct: 111 YEYLVPDFVFIGPPQDSALYQNVGALYNKDDDSQEVWDAFQGQARGRFSGEELSRLQDTA 170
Query: 153 -------ALLKQYEG----------------------------THNFHNFTSKRKPLDPS 177
L+ Y G THNFHNFT+ + DPS
Sbjct: 171 AKLAEDDLLMHDYVGLLSNALGGYRPQLSKLRAFEAAMQAYVGTHNFHNFTTGKLATDPS 230
Query: 178 CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTF 237
R+I Q + +++I GQSFMLHQIR+MV +A+ +AR + F
Sbjct: 231 AQRHIKEVVVRQVSPR----WTSVRIHGQSFMLHQIRRMVALAVLVARCQLPPTRVLNYF 286
Query: 238 GL-DQFDLPMAPGLGLLLEQVHYDLYNQK 265
+ + +P AP GLLLE ++ YN K
Sbjct: 287 VVGTRKHIPRAPAHGLLLEGPVFEHYNVK 315
>gi|50548607|ref|XP_501773.1| YALI0C12749p [Yarrowia lipolytica]
gi|74635069|sp|Q6CC39.1|PUS1_YARLI RecName: Full=tRNA pseudouridine synthase 1; AltName: Full=tRNA
pseudouridylate synthase 1; AltName: Full=tRNA-uridine
isomerase 1
gi|49647640|emb|CAG82083.1| YALI0C12749p [Yarrowia lipolytica CLIB122]
Length = 528
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 103/162 (63%), Gaps = 1/162 (0%)
Query: 132 ATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPF 191
A + +++FR++ ++ ++ +LK YEGTHNFHNFT + DPS R + S C PF
Sbjct: 292 AVERRHREEFRISGERLAKIREILKIYEGTHNFHNFTLGKAFKDPSAMRTMKSLTCSDPF 351
Query: 192 VKDGLELITLKIKGQSFMLHQIRKMVG-VAMAIARGFTSKDLIEKTFGLDQFDLPMAPGL 250
+ DG E +++KI GQSFMLHQIRKM+ VA+++ + LI +TF + ++P AP L
Sbjct: 352 LIDGTEWVSIKIHGQSFMLHQIRKMISMVALSVRCNADPQKLIPQTFEKARINIPKAPAL 411
Query: 251 GLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFI 292
GLLLE+ YD YN+K + E +HF + ++ F+HKFI
Sbjct: 412 GLLLERPVYDSYNKKLQGEFGREGVHFDNWNDQIEAFKHKFI 453
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 79/137 (57%), Gaps = 12/137 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A M Y G GY G+Q N KTIEGDI +A KAG +++++ + P+
Sbjct: 87 VACMIGYCGTGYHGMQL----------NPPQKTIEGDIFQAFVKAGAISQNNADDPKKSA 136
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F RAARTDKGV A ++SLK+ +E E IN HLPEQ+R+ + R K F + C+
Sbjct: 137 FMRAARTDKGVHAAGNVISLKMIIEDENIVEKINSHLPEQLRVWGVSRTNKAFECRKLCS 196
Query: 119 ARTYSYTCPTYAFATPQ 135
+R Y Y PTY+F P+
Sbjct: 197 SRVYEYLMPTYSFLNPR 213
>gi|356500639|ref|XP_003519139.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Glycine max]
Length = 548
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 101/166 (60%), Gaps = 4/166 (2%)
Query: 154 LLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQI 213
+LK + GTHNFHNFT++ K DP+ RYI+SF+ V +G+E + ++ GQSFMLHQI
Sbjct: 326 ILKCFVGTHNFHNFTTRTKAEDPAARRYIISFNANTTLVVEGVEFVKCEVVGQSFMLHQI 385
Query: 214 RKMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMH 272
RKM+G+A+AI R + LI++ D ++P AP +GL L++ + YNQK+ H
Sbjct: 386 RKMIGLAVAIMRNCAPESLIDEALQQDVNINVPTAPEVGLYLDECFFTSYNQKWKD---H 442
Query: 273 ESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF 318
E L +KE +EF+ K+I ++ TE E + WL L ++
Sbjct: 443 EELSMKAYEKEADEFKMKYIYSHIASTEQKEGTVALWLHSLNHRNY 488
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 78/133 (58%), Gaps = 12/133 (9%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ FAY GVGY G+Q +N G KTIEGD+ EAL+ +G V E P+
Sbjct: 52 VAIFFAYCGVGYQGMQ----------KNPGAKTIEGDLEEALYVSGAVPEQDRGVPKRYD 101
Query: 61 FQRAARTDKGVSALKQIVSLK--LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ R+ARTDKGVSA+ Q+VS + + + +N +LP QIRI KRVT FN+K C+
Sbjct: 102 WARSARTDKGVSAVGQVVSGRFYIDPPGLVDRLNSNLPSQIRIFGYKRVTASFNAKKFCD 161
Query: 119 ARTYSYTCPTYAF 131
R Y Y P +A
Sbjct: 162 RRRYVYLIPVFAL 174
>gi|294949997|ref|XP_002786409.1| tRNA pseudouridine synthase A, putative [Perkinsus marinus ATCC
50983]
gi|239900701|gb|EER18205.1| tRNA pseudouridine synthase A, putative [Perkinsus marinus ATCC
50983]
Length = 427
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 102/329 (31%), Positives = 161/329 (48%), Gaps = 51/329 (15%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMK---TIEGDIMEALFKAGFVTEDSFNTPQNI 59
+ YSG G G+Q I +G + TIEG +AL TE+ + +
Sbjct: 77 VALGYSGEGLKGMQ-------IQTNEKGEEIHSTIEGIFQKALLATNLSTEEILADKKKL 129
Query: 60 QFQRAARTDKGVSALKQIVSLKLP----------------------EEANKEAINEHL-P 96
+F RAARTDKGV A I++L LP E+ N +A+N+ L P
Sbjct: 130 KFSRAARTDKGVHAALNILALALPVTLDKTLPQGEGDATRNVWTFDEKKNVKALNDFLEP 189
Query: 97 EQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLK 156
+++ I+RV+ F+++ C R Y Y P +A D L+ ++
Sbjct: 190 LNMQVFGIQRVSNKFDARKQCERRRYEYLLPEFALDGKADAAK-----------LEEVMS 238
Query: 157 QYEGTH-NFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRK 215
QY G + NF NFT+K DPS R+I+S C QP D I +++ GQSF+LHQIRK
Sbjct: 239 QYVGKNKNFFNFTAKIPAEDPSAKRHIISITC-QPTEIDANTFIRIQLVGQSFLLHQIRK 297
Query: 216 MVGVAMAIARGFTSKDLIEKTFGL-DQFDLPMAPGLGLLLEQVHYDLYN--QKYGQDGMH 272
M+G+A+ + RG + IE+ ++ + +AP GL L++V++D YN + G D +
Sbjct: 298 MIGLAVEVCRGSAPEGAIEECLAAKERKHIHLAPAEGLFLDRVYFDCYNTGKTNGVDTVP 357
Query: 273 ESLHFHEVDKEVNEFRHKFILPYLVKTEI 301
E D + +F+ + + P + K+ +
Sbjct: 358 IEPQVWEED--IEDFKRRVLYPIVSKSVV 384
>gi|384498317|gb|EIE88808.1| hypothetical protein RO3G_13519 [Rhizopus delemar RA 99-880]
Length = 560
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 86/255 (33%), Positives = 126/255 (49%), Gaps = 37/255 (14%)
Query: 80 LKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAF-------- 131
+K P+ NK IN+ LP+ IR+ +GF++KN C++R Y Y PTY
Sbjct: 3 IKDPQLINK--INDLLPKDIRVWGFVETPRGFHAKNQCDSRIYEYLLPTYTLRAREKPIL 60
Query: 132 --ATPQDTKDDFRLTPDQ----------------FNFLQALLKQYE-------GTHNFHN 166
TP KD LT D + Q LK+++ GTH+FHN
Sbjct: 61 LKETPDSDKDIKILTKDSSLVRYVTPTDPSILLDYRVDQERLKKFKQAFSFFIGTHDFHN 120
Query: 167 FTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARG 226
+T + P + S R+I D P + +G+E I++K+ G SFMLHQIRKM+ +AM
Sbjct: 121 YTISKNP-EKSTQRHIKQIDVSDPKLIEGMEWISVKLHGSSFMLHQIRKMISIAMLCVHT 179
Query: 227 FTSKDLIEKTFGLD-QFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVN 285
S +I T + ++P AP GLLL++ YD YN+K G +S+ F +E+
Sbjct: 180 NASLSMIPMTLNKEISLNIPKAPATGLLLDRPVYDYYNEKVKSLGNKDSIEFDFYSQEIE 239
Query: 286 EFRHKFILPYLVKTE 300
F+ FI +L K E
Sbjct: 240 TFKQDFIYSHLFKQE 254
>gi|440794131|gb|ELR15302.1| tRNA pseudouridine synthase A, putative [Acanthamoeba castellanii
str. Neff]
Length = 324
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 133/269 (49%), Gaps = 53/269 (19%)
Query: 89 EAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKD--------- 139
+ IN +LP+ IR+ +I+R T GF+SKN+ ++R Y Y P Y A P++ K
Sbjct: 10 DRINANLPDDIRVFAIRRTTGGFDSKNSVDSRIYEYLLPGYILA-PEEPKPQPAEEGEAA 68
Query: 140 -------DFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV 192
D+++TP+ + L L+ ++GT+NF N+T + D S RYI+ F C PF
Sbjct: 69 AAELQIPDYQVTPELIDKLNEYLEVFKGTNNFFNYTIRMDKNDASAKRYIIGFKCSGPFT 128
Query: 193 KDGLELITLKIKGQSFMLHQIRKMVGVAMA------------------------------ 222
DG++ + +I+GQSFMLHQIR+M+G+A
Sbjct: 129 VDGVDFVRFEIQGQSFMLHQIRRMIGIATIRDHCTALLRHVLDIQSSQLCAHVWYLGMIV 188
Query: 223 --IARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEV 280
I R K+++ TF + + +P AP GLLL+Q Y +YN+ G+ +E + + +
Sbjct: 189 FLIKRNL-PKEVLNATF-VRKAPVPTAPSEGLLLQQCVYKVYNEGKGRS--YEPITWEGI 244
Query: 281 DKEVNEFRHKFILPYLVKTEITEKPMLAW 309
+V FR + I ++ E K W
Sbjct: 245 KDQVEAFRSEQIYTHIAAIEKETKVFAEW 273
>gi|84997902|ref|XP_953672.1| tRNA pseudouridine synthase [Theileria annulata]
gi|65304669|emb|CAI72994.1| tRNA pseudouridine synthase, putative [Theileria annulata]
Length = 478
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 170/398 (42%), Gaps = 85/398 (21%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
+ F Y G GY G Q + + +KT+EG + LF+ G + E N +Q
Sbjct: 72 VIAFGYLGTGYHGYQKQVEYKT--GEMDKVKTVEGTLENCLFRIGAINEAFRNMTHKLQM 129
Query: 62 QRAARTDKGVSA------------LKQIVSLKLPEEANKEAINEH--------------- 94
+ +RTDKGV A ++ + +P+ N IN
Sbjct: 130 SKCSRTDKGVHAACTYLGGRFNIEMEDVPEDHVPQVNNHSEINNSSKPDTSDNVELQSDG 189
Query: 95 ---------------LPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTY----AFATPQ 135
LPE IR I+RVTKGF++++ C+ R Y Y P + F P
Sbjct: 190 KLSKEEKFVQRLNAALPEDIRCFKIQRVTKGFDARSLCSKRKYEYIIPEWLLSKKFVLPN 249
Query: 136 D------------------TKDDFRL----------------TPDQFNFLQALLKQYEGT 161
+ TKD +L T + + L +LK Y+GT
Sbjct: 250 EEHEKHFRNLEVIFEENTKTKDIIKLSKLNDTLYEVKGGFEETEIEHSRLYEILKLYQGT 309
Query: 162 HNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAM 221
HNFHNFT K+K + SR+I + +++ LE++ + I GQSF+ +QIRKM+ +A+
Sbjct: 310 HNFHNFTVKQKEEINNTSRFIHKISIKSHKIQE-LEVVKILIVGQSFLYNQIRKMISLAL 368
Query: 222 AIARGFTSKDLIEKTFGLDQF-DLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEV 280
+ G K+ +E + F ++ + P GL+L ++D YN + + +V
Sbjct: 369 QVYLGIAPKNSVEFSLNKSHFLNINLVPSEGLILHHPYFDSYNMNRCNPPEVPYIEYKDV 428
Query: 281 DKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF 318
+V F++K+I P VK + WLE + + F
Sbjct: 429 KTKVEGFKNKYIYPE-VKKSMESDLWEGWLENILKYPF 465
>gi|224085970|ref|XP_002307759.1| predicted protein [Populus trichocarpa]
gi|222857208|gb|EEE94755.1| predicted protein [Populus trichocarpa]
Length = 426
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 103/181 (56%), Gaps = 8/181 (4%)
Query: 154 LLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQI 213
+L Y G+HNFHNFT++ K DPS RYI+SFD + +G+E + ++ GQSFMLHQI
Sbjct: 252 ILNYYLGSHNFHNFTTRTKAEDPSAQRYIISFDAKTTVAVEGIEFVKCEVVGQSFMLHQI 311
Query: 214 RKMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMH 272
RKM+GVA+AI R S+ LI+ + ++P AP +GL L++ + YNQK+ H
Sbjct: 312 RKMIGVAVAIMRNCASESLIQTALQKNVNINVPTAPEVGLYLDECFFTSYNQKWKDS--H 369
Query: 273 ESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANG 332
E L + ++E EF+ K I ++ TE E + WL HS R A NG
Sbjct: 370 EELSMKDYEEEAEEFKMKHIYSHIATTEHKEGSVALWL-----HSLNHRNYPDLRACDNG 424
Query: 333 E 333
+
Sbjct: 425 D 425
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 75/133 (56%), Gaps = 12/133 (9%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ Y GVGY G+Q +N G KTIEGD+ EALF AG V E P+
Sbjct: 3 IAIFLTYCGVGYQGMQ----------KNPGAKTIEGDLEEALFHAGAVPEHDRGIPKRYD 52
Query: 61 FQRAARTDKGVSALKQIVSLK--LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ R+ARTDKGVSA+ Q+VS + + E ++ +L QIRI KRVT FN+K C+
Sbjct: 53 WARSARTDKGVSAVGQVVSGRFYIDPPGLVERLHSNLSPQIRIFGYKRVTGSFNAKKFCD 112
Query: 119 ARTYSYTCPTYAF 131
R Y Y P +A
Sbjct: 113 RRRYVYLIPVFAL 125
>gi|123483294|ref|XP_001323995.1| tRNA pseudouridine synthase family protein [Trichomonas vaginalis
G3]
gi|121906870|gb|EAY11772.1| tRNA pseudouridine synthase family protein [Trichomonas vaginalis
G3]
Length = 346
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/308 (28%), Positives = 145/308 (47%), Gaps = 28/308 (9%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ + F Y G GY GLQ N+ ++TI+ D+ E L K+G + E S+ I
Sbjct: 33 VVIYFRYIGTGYHGLQ----------YNEKVRTIDSDLFEGLEKSGILPEGSYKRRGKIA 82
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKEA------INEHLPEQ--IRILSIKRVTKGFN 112
+ A+RTD GV A Q++ K E + E IN++LP I+I+S F
Sbjct: 83 WNEASRTDAGVHACGQLICFKSYEICDMECSQIPELINKNLPSDSTIKIMSCLCTNSPFP 142
Query: 113 SKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFL-QALLKQYEGTHNFHNFTSKR 171
K+ R Y+Y P + F++ PD ++L Q + + G HNFHN+T+
Sbjct: 143 VKDFATHRKYNYLLPLHVFSSTD---------PDHLDYLRQKICPLFIGQHNFHNYTNGT 193
Query: 172 KPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKD 231
R+I F F +G E + I+G SFML+QIRKM+ + A + + +
Sbjct: 194 PKTYKGAQRFITDFTFGDVFTINGEEYVLFYIRGISFMLNQIRKMISMVTAASFNQVTPE 253
Query: 232 LIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKF 291
+ ++ + + + PG GL L+Q+ Y+ Y K + + F + E++ K
Sbjct: 254 EVSRSLTEETCRIQLLPGDGLFLDQIEYEEYMSKLKHPNPNNDIEFRAWRPVIEEWKQKV 313
Query: 292 ILPYLVKT 299
+ P++ +T
Sbjct: 314 LFPHIAQT 321
>gi|384251305|gb|EIE24783.1| pseudouridine synthase [Coccomyxa subellipsoidea C-169]
Length = 391
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 131/274 (47%), Gaps = 51/274 (18%)
Query: 31 MKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLPE-----E 85
+ T+E + EA+FKAG + E + I + R++RTDKGV + ++ LK+ E
Sbjct: 17 ITTVEAALEEAIFKAGGILESNRGALHKIDWSRSSRTDKGVHSCSTVIGLKMECVVESFE 76
Query: 86 ANKEA------INEHLP-EQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTK 138
++ E IN+HLP +Q+R+LS++R T+ F+++ C R YSY PT D
Sbjct: 77 SDPEGLGIAGEINKHLPGQQVRVLSVQRTTQKFDARQICEGRVYSYFLPTSIIGLELDGS 136
Query: 139 DDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKR--------------------------- 171
++ R ++ L+ L YEG H FHNFT +R
Sbjct: 137 EEDR---ERLRLLRECLALYEGVHAFHNFTKRRLYRTSQRKQGRGAKRKGGGRVTAGAWN 193
Query: 172 ------KPLDPSCSRYIMSF--DCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAI 223
P+ S R+I S D P V G I + GQSFMLHQIR M+G A+A+
Sbjct: 194 EERDEADPITRSHFRHIFSATADDPTPLVPGGTPCIKVVFSGQSFMLHQIRHMIGAAVAV 253
Query: 224 ARGFTSKDLIEKTF-GLDQFDLPMAPGLGLLLEQ 256
ARG D +E + +P+AP L+L +
Sbjct: 254 ARGTIPLDYVEGCLRSPSRAIMPLAPPHVLVLSE 287
>gi|402594751|gb|EJW88677.1| RNA recognition domain-containing protein [Wuchereria bancrofti]
Length = 537
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 115/208 (55%), Gaps = 27/208 (12%)
Query: 2 AMMFAYSGVGYFGLQ--------SKYLFFLI-----------FCRNQGMKTIEGDIMEAL 42
A++ AY G Y G+Q + LF+ + + + TIEG++ +A+
Sbjct: 329 ALLLAYQGKKYNGMQLCIGLNQCMRPLFYELGVCDVNVQYWQYLVQKDFPTIEGELFKAM 388
Query: 43 FKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLPEEANK-------EAINEHL 95
K G++ E+ +P FQRAARTD+ VSA +Q+ S++L E ++ + +N HL
Sbjct: 389 AKCGYICENDVFSPVRFAFQRAARTDRSVSAARQMCSMRLAPENHEYFLKTATDKLNAHL 448
Query: 96 PEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQD-TKDDFRLTPDQFNFLQAL 154
PE+IR+L ++R + F + NC+ RTYSYT PTYAFA + T FR++ L L
Sbjct: 449 PEEIRVLGVRRAIRSFKAHKNCDKRTYSYTLPTYAFARANELTNSGFRMSETSMAELNDL 508
Query: 155 LKQYEGTHNFHNFTSKRKPLDPSCSRYI 182
L Y+GTHNF N+TS R+ + + + I
Sbjct: 509 LALYKGTHNFFNYTSGRRVFNSAVNNII 536
>gi|387594163|gb|EIJ89187.1| hypothetical protein NEQG_01006 [Nematocida parisii ERTm3]
gi|387595640|gb|EIJ93263.1| hypothetical protein NEPG_01605 [Nematocida parisii ERTm1]
Length = 325
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 139/278 (50%), Gaps = 27/278 (9%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ Y+G+GY G Q N+ KTIE + + + +++E + +
Sbjct: 6 VALIIGYNGIGYKGSQI----------NKEEKTIEKTVCDEIHALHYISERNAEDYSKVA 55
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKEA------INEHLPEQ-IRILSIKRVTKGFNS 113
QR++RTDKGV A ++SL++ + + E LP I + + TK F++
Sbjct: 56 LQRSSRTDKGVHAAMLVLSLRIEISEGRSCKDLENKLKESLPAHGIVLHRLVETTKNFDA 115
Query: 114 KNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKP 173
K+ C +R Y Y P A+ T DT +D F L++ EGTHNFHNFT +
Sbjct: 116 KHRCESRVYEYFVPQSAYVTESDTSEDISRKTKIFT---ETLQKMEGTHNFHNFTILTQE 172
Query: 174 LDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTS---- 229
P R+I E+ + +GL+ + + GQSFM+HQIRKM+G ++ A+
Sbjct: 173 KGP--VRFIKKITVEE-YTAEGLKWNKVVLHGQSFMIHQIRKMIGFSVLAAQRLAGPLDV 229
Query: 230 KDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYG 267
+E F ++ ++P PG LLL ++ YN+K+G
Sbjct: 230 PKALELVFSTEKRNIPKVPGELLLLSHSYFSNYNEKFG 267
>gi|396479511|ref|XP_003840772.1| similar to tRNA pseudouridine synthase [Leptosphaeria maculans JN3]
gi|312217345|emb|CBX97293.1| similar to tRNA pseudouridine synthase [Leptosphaeria maculans JN3]
Length = 615
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 102/166 (61%), Gaps = 1/166 (0%)
Query: 136 DTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE-QPFVKD 194
D K +R++P + +QA L Y GTH +HN+T ++K D S RYI SF +P + +
Sbjct: 389 DVKKAYRISPIRQERVQAALNNYLGTHKYHNYTVQKKFSDKSAQRYIKSFKVAPKPIIIN 448
Query: 195 GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLL 254
E ++LK+ GQSFM+HQIRKMVG+A R T +I+++FG +P APGLGLLL
Sbjct: 449 DTEWLSLKVHGQSFMMHQIRKMVGMAALSVRCGTDPKIIQESFGNTVVRIPKAPGLGLLL 508
Query: 255 EQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
E+ +D YN+K + ES+ F + +KE+ EF+ + I + + E
Sbjct: 509 ERPVFDSYNEKQARAAGRESIDFTKYEKEIEEFKEREIYQRIFREE 554
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 73/136 (53%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M YSG GY G+Q Y KTIEGD+ A AG +++ + +
Sbjct: 110 VAVMIGYSGTGYKGMQIDYK----------QKTIEGDLFNAFVAAGAISKANATDHKKSS 159
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A +VSLKL +E + IN++L +QIR+ I+R F+ C+
Sbjct: 160 LVRCARTDKGVHAAGNVVSLKLIIEDEDIVQKINDNLSDQIRVWGIQRTVGSFSCYQACD 219
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y PT++F P
Sbjct: 220 SRWYEYLIPTHSFLPP 235
>gi|242776451|ref|XP_002478840.1| tRNA pseudouridine synthase, putative [Talaromyces stipitatus ATCC
10500]
gi|218722459|gb|EED21877.1| tRNA pseudouridine synthase, putative [Talaromyces stipitatus ATCC
10500]
Length = 580
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 122/235 (51%), Gaps = 13/235 (5%)
Query: 132 ATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDC-EQP 190
A Q+ K +R+ + +Q L +Y GT NFHN+T ++ DPS R I SF ++P
Sbjct: 343 AAYQNAKRAYRIPQSRLQRVQDALDKYVGTRNFHNYTIQKNFRDPSSKRVIKSFVANKEP 402
Query: 191 FVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGL 250
+ +G E ++LK+ GQSFM+HQIRKMV + I R +IE+++G + +P APGL
Sbjct: 403 IIINGTEWVSLKVHGQSFMMHQIRKMVAMVALIVRCGCDPKIIEESYGPTRLSIPKAPGL 462
Query: 251 GLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE---------- 300
GLLLE +D YN + +D E++ F + +KE+NEF+ + I + + E
Sbjct: 463 GLLLEHPIFDSYNNRAAKDFNKETIDFAKYEKEMNEFKQREIYDRIFREEEESNAFGIFF 522
Query: 301 --ITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEEDEEDRGGV 353
+ P +L L + +R + A + +E G E E EE+ G
Sbjct: 523 NHVDHYPANTFLYLTSGGIAASREGDVSATAEKVKTGEEALAGIESEPEENASGA 577
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 74/138 (53%), Gaps = 16/138 (11%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M YSG GY G+Q + KTIEGD+ A AG +++ + P+
Sbjct: 76 VAVMIGYSGTGYHGMQ----------LSPTEKTIEGDLFAAFVAAGAISKANAADPKKSS 125
Query: 61 FQRAARTDKGVSALKQIVSLKL----PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
R ARTD+GV A +VSLKL P+ K IN++L QIR+ + VTKGF+
Sbjct: 126 LVRCARTDRGVHAAGNVVSLKLIVEDPDIVKK--INDNLSPQIRVWGYEIVTKGFSCYQL 183
Query: 117 CNARTYSYTCPTYAFATP 134
C++R Y Y PT+ F P
Sbjct: 184 CDSRMYEYLIPTHCFLPP 201
>gi|168058399|ref|XP_001781196.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667349|gb|EDQ53981.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 499
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 100/171 (58%), Gaps = 7/171 (4%)
Query: 151 LQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFML 210
L +L +Y GT N+HNFT++ KP DPS RYI+SF + G++ + + GQSFML
Sbjct: 321 LNEILGKYVGTRNYHNFTARIKPEDPSAKRYIISFTAGKVIEVQGMQFVPCTVVGQSFML 380
Query: 211 HQIRKMVGVAMAIARGFTSKDLIEKTFGL---DQFDLPMAPGLGLLLEQVHYDLYNQKYG 267
HQIRKM+G A+AI RG +I+ F L + + PMAP LGL L++ Y YN+K+
Sbjct: 381 HQIRKMIGTAIAIMRGCVPDSIID--FALQSKNDVNTPMAPELGLFLDECFYSAYNKKFS 438
Query: 268 QDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF 318
HE L ++++ +F+H+ I P++ TE + M WL L D +
Sbjct: 439 NS--HEKLSQEGYEEQILKFKHEVIYPHIATTEAKDGTMALWLHGLNDRHY 487
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 79/133 (59%), Gaps = 12/133 (9%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ AY G Y G+Q RN G TIEG++ +ALF+A + E +F + +
Sbjct: 59 VALILAYCGAAYQGMQ----------RNPGAITIEGELEQALFRADAIAECNFGDMRKVD 108
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK--EAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ RAARTDKGVSA+ QIVS +L + E +N+HLP+ IR+ RVT FN+K C+
Sbjct: 109 WMRAARTDKGVSAIGQIVSARLVIDPPGLVERVNQHLPKDIRVFGYTRVTSNFNAKQMCD 168
Query: 119 ARTYSYTCPTYAF 131
R Y Y P +AF
Sbjct: 169 KRRYEYLVPVFAF 181
>gi|255727174|ref|XP_002548513.1| tRNA pseudouridine synthase 1 [Candida tropicalis MYA-3404]
gi|240134437|gb|EER33992.1| tRNA pseudouridine synthase 1 [Candida tropicalis MYA-3404]
Length = 427
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 116/205 (56%), Gaps = 13/205 (6%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGL 196
++ ++R++ + + + ++KQYEGTHNFHNFT + D S SRY++S PFV +G
Sbjct: 214 SRREYRVSKHKLDHFRDVMKQYEGTHNFHNFTIGKPFKDTSASRYMISTKMSDPFVIEGT 273
Query: 197 ELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQ 256
E +++KI GQSFMLHQIRKM+ +A + R +I F D+ ++P AP LGLLLE
Sbjct: 274 EWVSIKIHGQSFMLHQIRKMIAMATMVVRLSLPSKIINNFFKEDKINIPKAPALGLLLEN 333
Query: 257 VHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADH 316
YD YN K + ++ + F + DKE+ +F+ K+I + E E A+ +
Sbjct: 334 PVYDGYNTKLKKTD-YDEIDFIKFDKEMEDFKMKYIYDKIYAEESKENTFYAFFGFI--D 390
Query: 317 SFETRAAKAALAAANGEELQEVTDG 341
SF+ +N +E EVT G
Sbjct: 391 SFK----------SNRDEDGEVTKG 405
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 84/136 (61%), Gaps = 14/136 (10%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
M Y G GY G+Q + + +KTIE D+ EA+ KAG +++++ + QFQR
Sbjct: 1 MLGYCGTGYNGMQVQ--------NDPNVKTIEKDVYEAMVKAGAISKENSTDLKKSQFQR 52
Query: 64 AARTDKGVSALKQIVSLKL----PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
AARTDKGV A ++SLK+ PE NK IN++LPEQIR+ I+R TKGF+ + C++
Sbjct: 53 AARTDKGVHAAGNVISLKMIIEDPEILNK--INDNLPEQIRLWGIQRTTKGFDCRKCCSS 110
Query: 120 RTYSYTCPTYAFATPQ 135
R Y Y PTY+ P+
Sbjct: 111 RIYEYLLPTYSLLPPK 126
>gi|154418432|ref|XP_001582234.1| tRNA pseudouridine synthase family protein [Trichomonas vaginalis
G3]
gi|121916468|gb|EAY21248.1| tRNA pseudouridine synthase family protein [Trichomonas vaginalis
G3]
Length = 345
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 158/315 (50%), Gaps = 32/315 (10%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ +++ Y G Y GLQ +N T+E ++ +AL AGF+++ + I+
Sbjct: 29 IILLYRYIGTQYHGLQ----------QNIDTHTVEKELFQALISAGFLSDQANCNLNRIK 78
Query: 61 FQRAARTDKGVSALKQIVSLK------LPEEANKEAINEHLPE--QIRILSIKRVTKGFN 112
+ A+RTD GV A Q++S K + + IN+ LP I I++ + + F
Sbjct: 79 WSEASRTDAGVHACAQVLSFKASGLKGICIADIPDLINKQLPRTSDIEIITCITLRRQFY 138
Query: 113 SKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQ-ALLKQYEGTHNFHNFTSKR 171
++ +R Y++ PT AF++ + + N+L+ ++L + G N+HNFTS +
Sbjct: 139 AQKFAESRNYNFLLPTNAFSSN---------SIEHLNYLRTSILPLFIGWLNYHNFTSNK 189
Query: 172 KPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKD 231
+PS R I F PF +G+E + I G+SFML+QIRKM+ ++ + + +
Sbjct: 190 SASNPSSMRKIDVFTFTDPFEVEGVEFVLFTIHGESFMLNQIRKMIATVISASHNYIGAE 249
Query: 232 LIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGM--HESLHFHEVDKEVNEFRH 289
+++ + + + M PG GL+L+ V Y N+ ++ + L F E E+ ++
Sbjct: 250 EVKRCLSEEGWSIKMCPGDGLMLDHVDYIKCNKPSKKNPITFENDLQFTEFQPEIQRWKK 309
Query: 290 KFILPYLVKTEITEK 304
+ + P++ EI +K
Sbjct: 310 EVLFPHI--AEIIKK 322
>gi|18394855|ref|NP_564112.1| pseudouridine synthase-like protein [Arabidopsis thaliana]
gi|9558589|gb|AAF88152.1|AC026234_3 Contains similarity to a pseudouridine synthase 1 from Homo sapiens
gi|4455035 and contains tRNA pseudoridine synthase
PF|01416 domain. ESTs gb|T76494, gb|W43440 come from
this gene [Arabidopsis thaliana]
gi|14334544|gb|AAK59680.1| unknown protein [Arabidopsis thaliana]
gi|16323470|gb|AAL15229.1| unknown protein [Arabidopsis thaliana]
gi|332191845|gb|AEE29966.1| pseudouridine synthase-like protein [Arabidopsis thaliana]
Length = 549
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 101/166 (60%), Gaps = 3/166 (1%)
Query: 154 LLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQI 213
+L Y G+HNFHNFT++ K DP+ +RYI+SF+ DG + + ++ GQSFMLHQI
Sbjct: 324 ILSYYVGSHNFHNFTTRTKAADPAANRYILSFNANTVINLDGKDFVKCEVVGQSFMLHQI 383
Query: 214 RKMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMH 272
RKM+G+A+AI R + + LIE +F D + ++PMAP +GL L++ + YN+++ G H
Sbjct: 384 RKMIGLAVAIMRNYAPESLIEASFKKDVRINVPMAPEVGLYLDECFFTSYNKRF--KGSH 441
Query: 273 ESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF 318
E + E + EF+ K++ ++ E + + WL L ++
Sbjct: 442 EEVSMEEYKEVAEEFKWKYVYSHIGSAEEKDGAVAIWLHSLNQRNY 487
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 81/133 (60%), Gaps = 12/133 (9%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++FA+ GVGY G+Q +N G KTIEG++ EALF AG V + N P+N +
Sbjct: 60 VAIVFAFCGVGYQGMQ----------KNPGAKTIEGELEEALFHAGAVPDADRNKPRNYE 109
Query: 61 FQRAARTDKGVSALKQIVSLK--LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ R+ARTDKGVSA+ Q+VS + + E +N LP+QIR+ KRV F+SK C+
Sbjct: 110 WARSARTDKGVSAVGQVVSGRFYVDPPGFVERLNSKLPDQIRVFGYKRVAPSFSSKKFCD 169
Query: 119 ARTYSYTCPTYAF 131
R Y Y P +A
Sbjct: 170 RRRYVYLIPVFAL 182
>gi|407917586|gb|EKG10890.1| Pseudouridine synthase I TruA [Macrophomina phaseolina MS6]
Length = 706
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 99/166 (59%), Gaps = 1/166 (0%)
Query: 136 DTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDC-EQPFVKD 194
D K +R+ P + + L+A L YEGT N+HN+T + DPS R I SF E+P + +
Sbjct: 476 DAKKAYRVPPKRIDRLRAALNAYEGTRNYHNYTVHKTFKDPSAKRLIKSFKAAEKPIIIN 535
Query: 195 GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLL 254
G E I+LK+ GQSFM+HQIRKMVG+A + R + I +TFG +P PGLGLLL
Sbjct: 536 GTEWISLKVHGQSFMMHQIRKMVGMAALVVRCGCPIERIGETFGNVDVAIPKVPGLGLLL 595
Query: 255 EQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
E+ +D YN K + E + F + ++ ++EF+ + I + + E
Sbjct: 596 ERPVFDSYNAKAAEKFNREKVEFTKYEQAMDEFKQREIYERIFREE 641
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 73/136 (53%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ +M YSG GY G+Q N +TIEGD+ A KAG +++ + + P+
Sbjct: 130 VVVMIGYSGSGYKGMQ--------IMPNH--RTIEGDLFTAFVKAGAISKANADDPKKSA 179
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK--EAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A ++SLKL E E IN HL QIR+ I+R T F++ +
Sbjct: 180 LVRCARTDKGVHAAGNVISLKLIIEDPDIVEKINSHLSPQIRVWGIERTTGSFSAYQAVD 239
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y PTY+F P
Sbjct: 240 SRWYEYLIPTYSFLPP 255
>gi|255539108|ref|XP_002510619.1| pseudouridylate synthase, putative [Ricinus communis]
gi|223551320|gb|EEF52806.1| pseudouridylate synthase, putative [Ricinus communis]
Length = 584
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 109/195 (55%), Gaps = 4/195 (2%)
Query: 154 LLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQI 213
+LK Y G+HNFHNFT++ K DPS RYI+SFD +G+E + ++ GQSFMLHQI
Sbjct: 361 ILKYYVGSHNFHNFTTRTKAEDPSAQRYIISFDARTTVTVEGIEFVKCEVIGQSFMLHQI 420
Query: 214 RKMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMH 272
RKM+G+A+AI R + LI D + ++P AP +GL L++ + YNQK+ H
Sbjct: 421 RKMIGLAVAIMRNCAPESLISTALQKDVKINVPTAPEVGLYLDECFFTSYNQKWKD---H 477
Query: 273 ESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANG 332
E L + ++ +F+ K+I ++ TE E + WL L ++ L A N
Sbjct: 478 EELCMKDYEEVAEDFKMKYIYSHIASTEQKEGVVGLWLHSLNYRNYPDLRFCYTLDANNE 537
Query: 333 EELQEVTDGEEEEDE 347
+ + V +G+ +E
Sbjct: 538 KSTEVVNNGDANSEE 552
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 78/135 (57%), Gaps = 16/135 (11%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
MA+ FAY GVGY G+Q +N G KTIEGD+ EALF +G V E P+
Sbjct: 56 MAIFFAYCGVGYQGMQ----------KNPGAKTIEGDLEEALFHSGAVPEQDRGCPKRYD 105
Query: 61 FQRAARTDKGVSALKQIVSLKL----PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ R+ARTDKGVSA+ Q++S + P ++ +N LP QIRI KRVT FN+K
Sbjct: 106 WARSARTDKGVSAVGQVISGRFYVDPPGLVDR--LNSILPSQIRIFGYKRVTASFNAKKF 163
Query: 117 CNARTYSYTCPTYAF 131
C+ R Y Y P +A
Sbjct: 164 CDRRRYVYLIPVFAL 178
>gi|19075416|ref|NP_587916.1| tRNA pseudouridine synthase (predicted) [Schizosaccharomyces pombe
972h-]
gi|74676082|sp|O74451.2|YCG6_SCHPO RecName: Full=Putative tRNA pseudouridine synthase C16C4.06c
gi|6855456|emb|CAA20745.2| tRNA pseudouridine synthase (predicted) [Schizosaccharomyces pombe]
Length = 413
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/334 (27%), Positives = 155/334 (46%), Gaps = 58/334 (17%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G G+ GLQ N +KTI+ + +A + G V + + ++P+ I+
Sbjct: 42 VVSYRGTGFAGLQY----------NANVKTIQDTLFQAFARVGAVVQVNADSPKKIRMCS 91
Query: 64 AARTDKGVSALKQIVSLK------LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNC 117
AARTDKGV A+ ++ LK LP N +N+ LP IR+ + R F+ C
Sbjct: 92 AARTDKGVHAIVNVLGLKVLDNQPLPHVVN--LVNDILPPCIRVWKMARTFNSFSPHTVC 149
Query: 118 NARTYSYTCPTYAFATPQD----------------------------TKDD--------- 140
++R Y Y P + TP+ +K D
Sbjct: 150 DSRVYEYWLPVSSLLTPRPCTLEAYVIAKASEKAFPINETLSHLANLSKQDCVANSLSEP 209
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV-KDGLELI 199
FRL+ + +FL+ + GTH FH++T+++ D S R+++ + + K + +
Sbjct: 210 FRLSKPKLDFLKHACTMFRGTHRFHSYTTEKGFSDASSRRFLLDVRVDNLHIDKLNRQWV 269
Query: 200 TLKIKGQSFMLHQIRKMVGVAMAIAR-GFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVH 258
L GQSFM HQIRKMVG+ + + R G+ ++ L+ + +P AP LLL Q
Sbjct: 270 KLIFHGQSFMKHQIRKMVGILIHLTRTGWNAQVLLNTFNNSYRIRIPRAPAEFLLLNQPI 329
Query: 259 YDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFI 292
+ +N+K + HE + + K +++F H F+
Sbjct: 330 FQAFNKKCSRFD-HEPVEWSCAQKGIDQFAHSFL 362
>gi|115447813|ref|NP_001047686.1| Os02g0668400 [Oryza sativa Japonica Group]
gi|50251324|dbj|BAD28300.1| putative pseudouridine synthase 1 [Oryza sativa Japonica Group]
gi|50252138|dbj|BAD28134.1| putative pseudouridine synthase 1 [Oryza sativa Japonica Group]
gi|113537217|dbj|BAF09600.1| Os02g0668400 [Oryza sativa Japonica Group]
Length = 581
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 108/184 (58%), Gaps = 9/184 (4%)
Query: 154 LLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQI 213
+LK+Y GTHNFHNFT++ K DP+ R+I+SF ++ DG++ I ++ GQSFMLHQI
Sbjct: 384 ILKKYVGTHNFHNFTTRTKAEDPAAKRFIISFAADRVVNLDGIDFIRCEVVGQSFMLHQI 443
Query: 214 RKMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMH 272
RKM+G+A+A+ R + + + F D ++P AP +GL L++ + YN+K+ H
Sbjct: 444 RKMIGLAVAVMRNCAPESIYDVAFRKDVNLNVPTAPEVGLYLDECMFTSYNKKWKDS--H 501
Query: 273 ESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF------ETRAAKAA 326
E++ +E EF+ K+I P++ E E + WL L ++ + +A+
Sbjct: 502 EAVSMEPYSEEAEEFKLKYIFPHIAAMEHKEGAVALWLHSLNSRNYPDFRYMDNAGTEAS 561
Query: 327 LAAA 330
+AAA
Sbjct: 562 IAAA 565
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 72/133 (54%), Gaps = 12/133 (9%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ Y G GY G+Q +N G +TIEGD+ EAL++AG V E P+
Sbjct: 51 VAILLGYCGAGYQGMQ----------KNPGARTIEGDLEEALYRAGAVPEADRAAPRRYD 100
Query: 61 FQRAARTDKGVSALKQIVSLK--LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ RAARTDKGVSA Q+VS + + + +N L QIR RVT FN+K C+
Sbjct: 101 WARAARTDKGVSAAAQVVSGRFYVDPPVFTDRLNAQLAPQIRAFGYVRVTNSFNAKKFCD 160
Query: 119 ARTYSYTCPTYAF 131
R Y Y P +A
Sbjct: 161 RRRYVYLLPVFAL 173
>gi|218191324|gb|EEC73751.1| hypothetical protein OsI_08404 [Oryza sativa Indica Group]
Length = 581
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 108/184 (58%), Gaps = 9/184 (4%)
Query: 154 LLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQI 213
+LK+Y GTHNFHNFT++ K DP+ R+I+SF ++ DG++ I ++ GQSFMLHQI
Sbjct: 384 ILKKYVGTHNFHNFTTRTKAEDPAAKRFIISFAADRVVNLDGIDFIRCEVVGQSFMLHQI 443
Query: 214 RKMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMH 272
RKM+G+A+A+ R + + + F D ++P AP +GL L++ + YN+K+ H
Sbjct: 444 RKMIGLAVAVMRNCAPESIYDVAFRKDVNLNVPTAPEVGLYLDECMFTSYNKKWKDS--H 501
Query: 273 ESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF------ETRAAKAA 326
E++ +E EF+ K+I P++ E E + WL L ++ + +A+
Sbjct: 502 EAVSMEPYSEEAEEFKLKYIFPHIAAMEHKEGAVALWLHSLNSRNYPDFRYMDNAGTEAS 561
Query: 327 LAAA 330
+AAA
Sbjct: 562 IAAA 565
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 72/133 (54%), Gaps = 12/133 (9%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ Y G GY G+Q +N G +TIEGD+ EAL++AG V E P+
Sbjct: 51 VAILLGYCGAGYQGMQ----------KNPGARTIEGDLEEALYRAGAVPEADRAAPRRYD 100
Query: 61 FQRAARTDKGVSALKQIVSLK--LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ RAARTDKGVSA Q+VS + + + +N L QIR RVT FN+K C+
Sbjct: 101 WARAARTDKGVSAAAQVVSGRFYVDPPVFTDRLNAQLAPQIRAFGYVRVTNSFNAKKFCD 160
Query: 119 ARTYSYTCPTYAF 131
R Y Y P +A
Sbjct: 161 RRRYVYLLPVFAL 173
>gi|125583196|gb|EAZ24127.1| hypothetical protein OsJ_07867 [Oryza sativa Japonica Group]
Length = 518
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 108/184 (58%), Gaps = 9/184 (4%)
Query: 154 LLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQI 213
+LK+Y GTHNFHNFT++ K DP+ R+I+SF ++ DG++ I ++ GQSFMLHQI
Sbjct: 321 ILKKYVGTHNFHNFTTRTKAEDPAAKRFIISFAADRVVNLDGIDFIRCEVVGQSFMLHQI 380
Query: 214 RKMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMH 272
RKM+G+A+A+ R + + + F D ++P AP +GL L++ + YN+K+ H
Sbjct: 381 RKMIGLAVAVMRNCAPESIYDVAFRKDVNLNVPTAPEVGLYLDECMFTSYNKKWKDS--H 438
Query: 273 ESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF------ETRAAKAA 326
E++ +E EF+ K+I P++ E E + WL L ++ + +A+
Sbjct: 439 EAVSMEPYSEEAEEFKLKYIFPHIAAMEHKEGAVALWLHSLNSRNYPDFRYMDNAGTEAS 498
Query: 327 LAAA 330
+AAA
Sbjct: 499 IAAA 502
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
Query: 27 RNQGMKTIEGDIME-ALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLK--LP 83
+N G +TIEGD AL + P RAARTDKGVSA Q+VS + +
Sbjct: 3 KNPGARTIEGDPGGGALPGRRPGPRPNAPGPAATTGARAARTDKGVSAAAQVVSGRFYVD 62
Query: 84 EEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAF 131
+ +N L QIR RVT FN+K C+ R Y Y P +A
Sbjct: 63 PPVFTDRLNAQLAPQIRAFGYVRVTNSFNAKKFCDRRRYVYLLPVFAL 110
>gi|402223576|gb|EJU03640.1| tRNA pseudouridine synthase [Dacryopinax sp. DJM-731 SS1]
Length = 357
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 120/258 (46%), Gaps = 55/258 (21%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ + G G G+Q N +TIEG + +AL KAG V+ D+ + P +
Sbjct: 93 VALLIGFCGTGCHGMQY----------NPPHRTIEGILFDALVKAGCVSADNADDPTKVA 142
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK-----EAINEHLPEQIRILSIKRVTKGFNSKN 115
RAARTD GV A +VS+K+ E A+N HLP ++R+ I R F ++
Sbjct: 143 LSRAARTDTGVHAAGNLVSMKIIREPEGVADVMRAVNVHLPPEVRLWGIVRTANNFMART 202
Query: 116 NCNARTYSYTCPTYAFATPQ---------------------------------------- 135
+C++R Y Y P+Y P+
Sbjct: 203 SCDSRVYEYLFPSYMLLPPKPGTKMAAQVRSDRALSDETFAQVEPGEAHPFWATEEGDEL 262
Query: 136 DTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDG 195
K +R+ ++ L L+K +EGTHNF N+T ++ + + RY+MS + P V
Sbjct: 263 QRKRAWRVGLEEMTRLGELIKVFEGTHNFWNYTVGKEFKEKTVKRYMMSLEVRDPQVVGD 322
Query: 196 LELITLKIKGQSFMLHQI 213
+E I++K GQSFMLHQI
Sbjct: 323 MEWISVKFHGQSFMLHQI 340
>gi|297850446|ref|XP_002893104.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338946|gb|EFH69363.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 557
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 100/166 (60%), Gaps = 3/166 (1%)
Query: 154 LLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQI 213
+L Y G+HNFHNFT++ K DP+ +RYI+SF+ DG + + ++ GQSFMLHQI
Sbjct: 322 ILSYYVGSHNFHNFTTRTKAADPAANRYILSFNANTVINLDGKDFVKCEVVGQSFMLHQI 381
Query: 214 RKMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMH 272
RKM+G+A+A+ R + + LIE F D + ++PMAP +GL L++ + YN+++ G H
Sbjct: 382 RKMIGLAVAVMRNYAPESLIETAFKKDVRINVPMAPEVGLYLDECFFTSYNKRF--KGSH 439
Query: 273 ESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF 318
E + E + EF+ K++ ++ E + + WL L ++
Sbjct: 440 EEVSMEEFKEVAEEFKWKYVYSHIGSAEEKDGAVAIWLHSLNQRNY 485
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 81/133 (60%), Gaps = 12/133 (9%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++FA+ GVGY G+Q +N G KTIEG++ EALF AG V + N P+N +
Sbjct: 60 VAIVFAFCGVGYQGMQ----------KNPGAKTIEGELEEALFHAGAVPDADRNKPRNYE 109
Query: 61 FQRAARTDKGVSALKQIVSLK--LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ R+ARTDKGVSA+ Q+VS + + E +N LP+QIR+ KRV F+SK C+
Sbjct: 110 WARSARTDKGVSAVGQVVSGRFYVDPPGFVERLNSKLPDQIRVFGYKRVAPSFSSKKLCD 169
Query: 119 ARTYSYTCPTYAF 131
R Y Y P +A
Sbjct: 170 RRRYVYLIPVFAL 182
>gi|344230875|gb|EGV62760.1| hypothetical protein CANTEDRAFT_115504 [Candida tenuis ATCC 10573]
Length = 508
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 98/167 (58%), Gaps = 7/167 (4%)
Query: 140 DFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELI 199
D++++ D+ + LKQYEG+HNFHN+T + DPS RY+ S +PF+ E +
Sbjct: 287 DYKVSNDKLELFRDALKQYEGSHNFHNYTVGKNYKDPSARRYMKSTKVSEPFIIGDTEWV 346
Query: 200 TLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHY 259
++KI GQSFMLHQIRKM+ +A+ + R I +TF + ++P AP LGLLLE Y
Sbjct: 347 SIKIHGQSFMLHQIRKMIAMAVMLVRTGCPATRINETFSSTRVNIPKAPALGLLLENPVY 406
Query: 260 DLYN---QKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITE 303
+ YN +KYG + + F KE+++F+ KFI + E E
Sbjct: 407 ETYNSMLEKYG----YNKIDFSRYQKEMDDFKMKFIYDKIYNEERRE 449
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 80/137 (58%), Gaps = 10/137 (7%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A M Y G GY G+Q + N +KTIEG++ +A AG +++++ N +
Sbjct: 71 VACMIGYCGTGYNGMQIQ--------NNPDVKTIEGELFQAFINAGAISQENSNDLKKNG 122
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F RAARTDKGV A ++S KL +E + IN+ LPEQIRI I+R + F+ + C+
Sbjct: 123 FMRAARTDKGVHAAGNVISCKLIIEDEDILQKINKALPEQIRIWGIERTNRSFDCRKMCS 182
Query: 119 ARTYSYTCPTYAFATPQ 135
+R Y Y PT++F P+
Sbjct: 183 SRVYEYLLPTHSFLPPR 199
>gi|449485147|ref|XP_004157082.1| PREDICTED: LOW QUALITY PROTEIN: tRNA pseudouridine synthase A,
mitochondrial-like [Cucumis sativus]
Length = 519
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 98/166 (59%), Gaps = 3/166 (1%)
Query: 154 LLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQI 213
+LK Y GTHNFHNFT++ K DP+ R+I+SFD V +G+E + ++ GQSFMLHQI
Sbjct: 330 ILKHYVGTHNFHNFTTRTKAEDPAARRFIVSFDASAIVVVEGIEFVKCEVVGQSFMLHQI 389
Query: 214 RKMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMH 272
RKM+G+A+AI R + LIEK D ++P AP +GL L++ + YNQK+ H
Sbjct: 390 RKMMGLAVAIMRNCAPESLIEKALQKDVNINVPTAPEVGLYLDECLFTSYNQKWKD--TH 447
Query: 273 ESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF 318
E + ++ +F+ K I ++ TE + + WL L ++
Sbjct: 448 EEVSMKAYEEAAEDFKMKQIYSHIASTEHKDGAVALWLHSLNHRNY 493
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 74/133 (55%), Gaps = 12/133 (9%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A FAY GVGY G+Q +N G KTIE D+ EAL+ AG V E +
Sbjct: 57 VAXFFAYCGVGYQGMQ----------KNPGAKTIEADLEEALYLAGAVPEQDRGLSKRYD 106
Query: 61 FQRAARTDKGVSALKQIVSLK--LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ R+ARTDKGVSA+ Q+VS + + + +N +L QIRI KRVT FN+K C+
Sbjct: 107 WARSARTDKGVSAVGQVVSGRFYIDPPGFVDRLNSNLSPQIRIFGYKRVTASFNAKKFCD 166
Query: 119 ARTYSYTCPTYAF 131
R Y Y P +A
Sbjct: 167 RRRYVYLIPVFAL 179
>gi|449455575|ref|XP_004145528.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Cucumis sativus]
Length = 519
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 98/166 (59%), Gaps = 3/166 (1%)
Query: 154 LLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQI 213
+LK Y GTHNFHNFT++ K DP+ R+I+SFD V +G+E + ++ GQSFMLHQI
Sbjct: 330 ILKHYVGTHNFHNFTTRTKAEDPAARRFIVSFDASAIVVVEGIEFVKCEVVGQSFMLHQI 389
Query: 214 RKMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMH 272
RKM+G+A+AI R + LIEK D ++P AP +GL L++ + YNQK+ H
Sbjct: 390 RKMMGLAVAIMRNCAPESLIEKALQKDVNINVPTAPEVGLYLDECLFTSYNQKWKD--TH 447
Query: 273 ESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF 318
E + ++ +F+ K I ++ TE + + WL L ++
Sbjct: 448 EEVSMKAYEEAAEDFKMKQIYSHIASTEHKDGAVALWLHSLNHRNY 493
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 75/133 (56%), Gaps = 12/133 (9%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ FAY GVGY G+Q +N G KTIE D+ EAL+ AG V E +
Sbjct: 57 VAIFFAYCGVGYQGMQ----------KNPGAKTIEADLEEALYLAGAVPEQDRGLSKRYD 106
Query: 61 FQRAARTDKGVSALKQIVSLK--LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ R+ARTDKGVSA+ Q+VS + + + +N +L QIRI KRVT FN+K C+
Sbjct: 107 WARSARTDKGVSAVGQVVSGRFYIDPPGFVDRLNSNLSPQIRIFGYKRVTASFNAKKFCD 166
Query: 119 ARTYSYTCPTYAF 131
R Y Y P +A
Sbjct: 167 RRRYVYLIPVFAL 179
>gi|307136307|gb|ADN34131.1| tRNA pseudouridine synthase family protein [Cucumis melo subsp.
melo]
Length = 519
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 98/166 (59%), Gaps = 3/166 (1%)
Query: 154 LLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQI 213
+LK Y GTHNFHNFT++ K DP+ R+I+SFD V +G+E + ++ GQSFMLHQI
Sbjct: 330 ILKHYVGTHNFHNFTTRTKAEDPAARRFIVSFDASTTVVVEGIEFVKCEVVGQSFMLHQI 389
Query: 214 RKMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMH 272
RKM+G+A+AI R + LIEK D ++P AP +GL L++ + YNQK+ H
Sbjct: 390 RKMMGLAVAIMRNCAPESLIEKALQKDVNINVPTAPEVGLYLDECLFTSYNQKWKD--TH 447
Query: 273 ESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF 318
E + ++ +F+ K I ++ TE + + WL L ++
Sbjct: 448 EEVSMKAYEEVAEDFKMKQIYSHIASTEHKDGAVALWLHSLNHRNY 493
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 75/133 (56%), Gaps = 12/133 (9%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ FAY GVGY G+Q +N G KTIE D+ EAL+ AG V E +
Sbjct: 57 VAIFFAYCGVGYQGMQ----------KNPGAKTIEADLEEALYLAGAVPEQDRGLSKRYD 106
Query: 61 FQRAARTDKGVSALKQIVSLK--LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ R+ARTDKGVSA+ Q+VS + + + +N +L QIRI KRVT FN+K C+
Sbjct: 107 WARSARTDKGVSAVGQVVSGRFYIDPPGFVDRLNSNLSPQIRIFGYKRVTASFNAKKFCD 166
Query: 119 ARTYSYTCPTYAF 131
R Y Y P +A
Sbjct: 167 RRRYVYLIPVFAL 179
>gi|402465320|gb|EJW01196.1| tRNA pseudouridine synthase A [Edhazardia aedis USNM 41457]
Length = 326
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 84/294 (28%), Positives = 150/294 (51%), Gaps = 26/294 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ Y+G Y G Q N+ T+E +++ + + E + P+ I
Sbjct: 5 IAVIIGYNGKDYHGSQ----------LNKDFPTVEYQLVKGFLEISAIKEINSLDPKKIG 54
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKEAINEHL----PEQIRILSIKRVTKGFNSKNN 116
QR +RTDKGV A+ +++LK+ ++ + + + I + I RV+K F K+
Sbjct: 55 LQRGSRTDKGVHAVMAVITLKIEKDITSCDLKKLKFFLETKNIYLYKIVRVSKSFMPKHQ 114
Query: 117 CNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDP 176
C++R Y Y P++ F++ KD ++++ + + L+ L +Y GTHNF NFTSK P
Sbjct: 115 CDSRIYEYLLPSFIFSSDLSDKD-YKISEETHSLLRDLFVKYIGTHNFINFTSKNNTKGP 173
Query: 177 SCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKT 236
R+I + + + FV +G E I ++I G SF+ +QIRKM+G +++ KD
Sbjct: 174 I--RFIKNVEANEKFVYNGFEFIKIRITGNSFLFNQIRKMIGYVISLV--IYKKDEAISD 229
Query: 237 FG-------LDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKE 283
F L + ++P PG L L+ +D +N+K + + S +E+ K+
Sbjct: 230 FKMAFENDYLGKMNIPRVPGCFLYLDSPVFDFFNKKTAYEPIEISNEEYELVKD 283
>gi|357136941|ref|XP_003570061.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Brachypodium distachyon]
Length = 553
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 105/186 (56%), Gaps = 8/186 (4%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGL 196
TK+ F T + +LK Y GTHNFHNFT++ K DP+ R+I+SF + DG+
Sbjct: 339 TKNTFAYTDEVKEKFNRILKYYVGTHNFHNFTTRTKAEDPAAKRFIISFTANRVVRLDGI 398
Query: 197 ELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMAPGLGLLLE 255
+ + ++ GQSFMLHQIRKMVG+A+A+ R + + + F D + ++P AP +GL L+
Sbjct: 399 DFVRCEVVGQSFMLHQIRKMVGLAVAVMRNCAPESIYDVAFRKDIRLNVPTAPEVGLHLD 458
Query: 256 QVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLAD 315
+ + YN K+ HE++ +E EF+ K+I P++ E E + WL
Sbjct: 459 ECMFTSYNAKWKD--THEAVSIEPYAEEAEEFKVKYIFPHIAAMEHKEGAVALWL----- 511
Query: 316 HSFETR 321
HS +R
Sbjct: 512 HSLNSR 517
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 73/133 (54%), Gaps = 12/133 (9%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ AY G GY G+Q +N G +TIEGD+ EAL++AG V E P+ +
Sbjct: 50 VAILLAYCGAGYQGMQ----------KNPGARTIEGDLEEALYQAGAVPEADRAAPRRYE 99
Query: 61 FQRAARTDKGVSALKQIVSLK--LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ RAARTDKGVSA Q+VS + + + +N L QIR RVT F++K C+
Sbjct: 100 WARAARTDKGVSAAAQVVSGRFYVDPPGFVDRLNAQLAPQIRAFGYVRVTNSFSAKKFCD 159
Query: 119 ARTYSYTCPTYAF 131
R Y Y P A
Sbjct: 160 RRRYVYLLPVLAL 172
>gi|189209550|ref|XP_001941107.1| tRNA pseudouridine synthase 1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187977200|gb|EDU43826.1| tRNA pseudouridine synthase 1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 595
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 104/166 (62%), Gaps = 1/166 (0%)
Query: 136 DTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFD-CEQPFVKD 194
D K +R++P++ +QA L Y GTH +HN+T +K D S RYI SF +P + +
Sbjct: 398 DIKKAYRISPERQARVQAALNNYLGTHRYHNYTVHKKYNDKSAQRYIKSFQVAPKPIIIN 457
Query: 195 GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLL 254
E ++LK+ GQSFM+HQIRKMVG+A R T+ +++E++FG + +P APGLGLLL
Sbjct: 458 DTEWLSLKVHGQSFMMHQIRKMVGMAALTVRCGTNPEIMEESFGNNVVRIPKAPGLGLLL 517
Query: 255 EQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
E+ +D YN K + + ++F++ + ++ EF+ + I + + E
Sbjct: 518 ERPVFDSYNAKLAKQHDRDPINFNKFNDKIEEFKEREIYQRIFREE 563
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 74/136 (54%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M YSG GY G+Q + KTIEGD+ A AG +++ + P+ +
Sbjct: 100 VAVMIGYSGTGYKGMQI----------DNKQKTIEGDLFNAFVAAGAISKANAVDPKKVS 149
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A +VSLKL +E + IN HL +QIR+ I+R F+ C+
Sbjct: 150 LVRCARTDKGVHAAGNVVSLKLIIEDEDIVDKINSHLTDQIRVWGIQRTVGSFSCYQACD 209
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y PT++F P
Sbjct: 210 SRWYEYLIPTHSFLPP 225
>gi|425766523|gb|EKV05132.1| TRNA pseudouridine synthase, putative [Penicillium digitatum Pd1]
gi|425775167|gb|EKV13449.1| TRNA pseudouridine synthase, putative [Penicillium digitatum PHI26]
Length = 583
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 98/165 (59%), Gaps = 2/165 (1%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQ-PFVKDG 195
K +R + LQ L +YEGT NFHN+T ++ DPS R+I SF P + DG
Sbjct: 336 AKRAYRAPASRIARLQECLDRYEGTRNFHNYTIQKTYKDPSAKRHIKSFKVNTTPIIIDG 395
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
E ++LK+ GQSFM+HQIRKMV +A + R D I +T+G ++ +P APGLGLLLE
Sbjct: 396 TEWLSLKVHGQSFMMHQIRKMVAMATMVVRSGCHPDRITETYGPERIAIPKAPGLGLLLE 455
Query: 256 QVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
+ +D YN K Q + ++F + + E+NEF+ + I + + E
Sbjct: 456 RPIFDAYNNK-AQGLDRQPINFQKFEAEMNEFKQREIYDRIFREE 499
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 71/136 (52%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ YSG GY G+Q N+ +TIEGD+ AL G V++ + P+
Sbjct: 78 VALLMGYSGTGYSGMQ----------LNEQQRTIEGDLFTALVNVGAVSKANAADPKKSS 127
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F R ARTDKGV A +VSLK+ +E + IN L QIR+ + +K F+ C+
Sbjct: 128 FVRCARTDKGVHAAGNVVSLKMIVEDEDIIQKINAELSPQIRVWGYEVTSKSFSCYQMCD 187
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y P++ P
Sbjct: 188 SRVYEYLMPSHCLLPP 203
>gi|344300120|gb|EGW30460.1| hypothetical protein SPAPADRAFT_157524 [Spathaspora passalidarum
NRRL Y-27907]
Length = 525
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 100/161 (62%), Gaps = 1/161 (0%)
Query: 132 ATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPF 191
A ++ F+++ ++ N + +KQYEGTHNFHNFT + DPS SR++ + PF
Sbjct: 304 AIENQSRRSFKISTERLNQFREAMKQYEGTHNFHNFTIGKHFKDPSASRFMKTTTVSDPF 363
Query: 192 VKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLG 251
V +G E +++KI GQSFMLHQIRKM+ +A + R ++I+ FG + ++P AP LG
Sbjct: 364 VIEGTEWVSIKIHGQSFMLHQIRKMIAMATMVVRIGCPVNIIQDFFGNKKINIPKAPALG 423
Query: 252 LLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFI 292
LLLE Y+ YNQ Q ++ + F + D+E+ F+ K+I
Sbjct: 424 LLLENPVYEAYNQTL-QKLDYDPIDFTKFDEEMEAFKMKYI 463
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 93/172 (54%), Gaps = 21/172 (12%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A+M Y G GY G+Q + +KTIE D+ +A KAG ++ ++ + F
Sbjct: 89 AVMIGYCGTGYNGMQ--------LQNDPTIKTIERDLYDAFGKAGAISRENAEDMKKSGF 140
Query: 62 QRAARTDKGVSALKQIVSLKL----PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNC 117
RAARTDKGV A +VSLKL P+ K INEHLP+QIR+ I+R TKGF+ + C
Sbjct: 141 MRAARTDKGVHAAGNVVSLKLIIEDPDIVKK--INEHLPDQIRVWGIQRTTKGFDCRKLC 198
Query: 118 NARTYSYTCPTYAFATPQ------DTKDDFRL-TPDQFNFLQALLKQYEGTH 162
++R Y Y PTY+ P+ D ++ R PD F+ K +E TH
Sbjct: 199 SSRIYEYLLPTYSLLPPKKNTVLSDLLEEKRAKCPDLFHDDPEGAKWWEETH 250
>gi|403411896|emb|CCL98596.1| predicted protein [Fibroporia radiculosa]
Length = 357
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 111/222 (50%), Gaps = 39/222 (17%)
Query: 31 MKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKL----PEEA 86
++TIEG + AL K G V++D+ + P + RAARTD GV A VS+KL P
Sbjct: 116 LRTIEGVLFNALVKVGAVSQDNADDPVKVNLGRAARTDAGVHAAGNAVSMKLITPVPGVP 175
Query: 87 NKEA-INEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQ---------- 135
+ A +NE LP +IR+ SI RV GFN++ C++R Y+Y P+Y P+
Sbjct: 176 DLVARMNEELPPEIRLWSILRVQNGFNARTTCDSRKYTYFFPSYLMIPPKPGSGLHHTLQ 235
Query: 136 ----DTKDD--------------------FRLTPDQFNFLQALLKQYEGTHNFHNFTSKR 171
DT+ D +R+ Q L+ + + + G+HNFHNFT R
Sbjct: 236 DHGTDTQPDPFWSDDHPESILDDLRRKRTYRINSKQVEALRLIAQAFNGSHNFHNFTIGR 295
Query: 172 KPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQI 213
D SC R+I S P V E I++ GQSFMLHQI
Sbjct: 296 DFGDRSCVRHIKSITIADPVVYGETEWISVLFHGQSFMLHQI 337
>gi|344230876|gb|EGV62761.1| hypothetical protein CANTEDRAFT_115504 [Candida tenuis ATCC 10573]
Length = 559
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 99/169 (58%), Gaps = 7/169 (4%)
Query: 138 KDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLE 197
+ D++++ D+ + LKQYEG+HNFHN+T + DPS RY+ S +PF+ E
Sbjct: 285 RRDYKVSNDKLELFRDALKQYEGSHNFHNYTVGKNYKDPSARRYMKSTKVSEPFIIGDTE 344
Query: 198 LITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQV 257
+++KI GQSFMLHQIRKM+ +A+ + R I +TF + ++P AP LGLLLE
Sbjct: 345 WVSIKIHGQSFMLHQIRKMIAMAVMLVRTGCPATRINETFSSTRVNIPKAPALGLLLENP 404
Query: 258 HYDLYN---QKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITE 303
Y+ YN +KYG + + F KE+++F+ KFI + E E
Sbjct: 405 VYETYNSMLEKYG----YNKIDFSRYQKEMDDFKMKFIYDKIYNEERRE 449
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 80/137 (58%), Gaps = 10/137 (7%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A M Y G GY G+Q + N +KTIEG++ +A AG +++++ N +
Sbjct: 71 VACMIGYCGTGYNGMQIQ--------NNPDVKTIEGELFQAFINAGAISQENSNDLKKNG 122
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F RAARTDKGV A ++S KL +E + IN+ LPEQIRI I+R + F+ + C+
Sbjct: 123 FMRAARTDKGVHAAGNVISCKLIIEDEDILQKINKALPEQIRIWGIERTNRSFDCRKMCS 182
Query: 119 ARTYSYTCPTYAFATPQ 135
+R Y Y PT++F P+
Sbjct: 183 SRVYEYLLPTHSFLPPR 199
>gi|297850452|ref|XP_002893107.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338949|gb|EFH69366.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 571
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 99/166 (59%), Gaps = 3/166 (1%)
Query: 154 LLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQI 213
+L Y G+HNFHNFT++ K DP+ +RYI+SF+ DG + I ++ GQSFMLHQI
Sbjct: 336 ILSYYVGSHNFHNFTTRTKAADPAANRYILSFNANTVINLDGKDFIKCEVVGQSFMLHQI 395
Query: 214 RKMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMH 272
RKM+G+A+A+ R + + LIE F D + ++PMAP +GL L++ + YN+++ G H
Sbjct: 396 RKMIGLAVAVMRNYAPESLIETAFKKDVRINVPMAPEVGLYLDECFFTSYNKRF--KGSH 453
Query: 273 ESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF 318
E + E + EF+ K + ++ E + + WL L ++
Sbjct: 454 EEVSMEEYKEVAEEFKWKHVYSHIGSAEEKDGAVAIWLHSLNQRNY 499
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/133 (44%), Positives = 81/133 (60%), Gaps = 12/133 (9%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++FA+ GVGY G+Q +N G KTIEG++ EALF AG V E N P+N +
Sbjct: 60 VAIVFAFCGVGYQGMQ----------KNPGAKTIEGELEEALFHAGAVPEADRNKPRNYE 109
Query: 61 FQRAARTDKGVSALKQIVSLK--LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ R+ARTDKGVSA+ Q+VS + + E +N LP+QIR+ KRV F+SK C+
Sbjct: 110 WARSARTDKGVSAVGQVVSGRFYVDPPGFVERLNSKLPDQIRVFGYKRVAPSFSSKKLCD 169
Query: 119 ARTYSYTCPTYAF 131
R Y Y P +A
Sbjct: 170 RRRYVYLIPVFAL 182
>gi|242066426|ref|XP_002454502.1| hypothetical protein SORBIDRAFT_04g032290 [Sorghum bicolor]
gi|241934333|gb|EES07478.1| hypothetical protein SORBIDRAFT_04g032290 [Sorghum bicolor]
Length = 567
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 102/178 (57%), Gaps = 3/178 (1%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGL 196
TK F T + +LK Y GTHNFHNFT++ K DP+ R+I+SF ++ DG+
Sbjct: 340 TKSAFSYTDEVKERFNRILKYYVGTHNFHNFTTRTKAEDPAAKRFIISFGADRVVSLDGI 399
Query: 197 ELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMAPGLGLLLE 255
+ + ++ GQSFMLHQIRKM+G+A+A+ R + + + F D ++P AP +GL L+
Sbjct: 400 DFVRCEVVGQSFMLHQIRKMIGLAVAVMRNCAPETIYDVAFRKDVNLNVPTAPEVGLYLD 459
Query: 256 QVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELL 313
+ + YN+K+ HE++ +E EF+ K+I P++ E E + WL L
Sbjct: 460 ECMFTSYNKKWKDS--HEAVSMEPYYEEAEEFKVKYIFPHIAAMEHKEGAVALWLHSL 515
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 72/133 (54%), Gaps = 12/133 (9%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ Y G GY G+Q +N G +TIEGD+ EAL++AG V E P+
Sbjct: 54 VAILLGYCGAGYQGMQ----------KNPGARTIEGDLEEALYQAGAVPEADRAAPRRYD 103
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK--EAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ RAARTDKGVSA Q+VS + + + +N L QIR RVT F++K C+
Sbjct: 104 WARAARTDKGVSAAAQVVSGRFYVDPPGFIDRLNAQLASQIRAYGYVRVTNSFSAKKFCD 163
Query: 119 ARTYSYTCPTYAF 131
R Y Y P +A
Sbjct: 164 RRRYLYLLPVFAL 176
>gi|401887159|gb|EJT51163.1| pseudouridylate synthase [Trichosporon asahii var. asahii CBS 2479]
gi|406694962|gb|EKC98277.1| pseudouridylate synthase [Trichosporon asahii var. asahii CBS 8904]
Length = 358
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 127/284 (44%), Gaps = 57/284 (20%)
Query: 77 IVSLKLPE--EANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATP 134
I+ LPE + E +N LP QIR+ R K F ++ C++R Y Y P+Y P
Sbjct: 2 ILDPPLPEGFSSLTEYVNSFLPAQIRMWGFVRAMKSFQARTACDSRVYEYLLPSYCLLPP 61
Query: 135 QDT--------------------------------------------------KDDFRLT 144
T + +R+
Sbjct: 62 AKTDPLAEQLDKVSPGWREVVKVPAEFVDAAPAIPEPKEGDPADPKSRGEFERRRGWRID 121
Query: 145 PDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIK 204
PD + ++ +Y+GTHNFHN+T + D + RY+ + D P V +E I+++I
Sbjct: 122 PDTLQRFRNMIAEYQGTHNFHNYTVGKPFKDATVKRYMKTLDVRDPAVYGDIEWISVRIH 181
Query: 205 GQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQ 264
GQSFMLHQIRKM+ +A+ R T +I TF + +P AP LGLLLEQ + YN
Sbjct: 182 GQSFMLHQIRKMMSLAILATRTGTPPKIIPATFENKRVHIPKAPPLGLLLEQPQFKTYND 241
Query: 265 KYGQDGMH-----ESLHFHEVDKEVNEFRHKFILPYLVKTEITE 303
K + H E + F + + +++F+ ++I L + E+ +
Sbjct: 242 KAQKLPNHGAEPRELVDFSKYEDVMHKFKVEWIYERLRELELEQ 285
>gi|255935685|ref|XP_002558869.1| Pc13g04330 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583489|emb|CAP91502.1| Pc13g04330 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 548
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 98/165 (59%), Gaps = 2/165 (1%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQ-PFVKDG 195
K +R + LQ L +YEGT NFHN+T ++ DPS R+I SF P + +G
Sbjct: 302 AKRAYRAPASRIARLQECLNRYEGTKNFHNYTIQKTHKDPSAKRHIKSFKVNTTPIIING 361
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
E ++LK+ GQSFM+HQIRKMV +A + R D I +T+G ++ +P APGLGLLLE
Sbjct: 362 TEWLSLKVHGQSFMMHQIRKMVAMATMVVRSGCHPDRITETYGPERIAIPKAPGLGLLLE 421
Query: 256 QVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
+ +D YN K Q + ++F + + E+NEF+ + I + + E
Sbjct: 422 RPIFDAYNNK-AQGLDRQPINFQKFEAEMNEFKQREIYDRIFREE 465
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 71/136 (52%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ YSG GY G+Q N+ +TIEGD+ AL G V++ + P+
Sbjct: 85 VALLMGYSGTGYSGMQL----------NEQQRTIEGDLFTALVNVGAVSKANAADPKKSS 134
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F R ARTDKGV A +VSLK+ +E + IN L QIR+ + +K F+ C+
Sbjct: 135 FVRCARTDKGVHAAGNVVSLKMIVEDEDIIQKINAELSPQIRVWGYEVTSKSFSCYQMCD 194
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y P++ P
Sbjct: 195 SRVYEYLMPSHCLVPP 210
>gi|380481090|emb|CCF42047.1| tRNA pseudouridine synthase A [Colletotrichum higginsianum]
Length = 622
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 104/168 (61%), Gaps = 1/168 (0%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE-QPFVKDG 195
K +R+TP++ + LQA L +Y GT NFHN+T ++ DPS R+I SF QP
Sbjct: 396 AKRRYRVTPERLSQLQAALNEYCGTINFHNYTVQKSFKDPSAKRHIKSFQVNTQPIQIRD 455
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
E ++LK+ GQSFM+HQIRKMVG+A + R T + I++++G + +P APGLGLLLE
Sbjct: 456 TEWVSLKVHGQSFMMHQIRKMVGMAALVVRCATPLERIKQSYGPTRIAIPKAPGLGLLLE 515
Query: 256 QVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITE 303
+ +D YN++ + E++ F + D+++ F+ K I + + E E
Sbjct: 516 RPVFDAYNRRAKDNFGKETIDFGKYDEKLQAFKDKQIYQRIFEVEEQE 563
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 73/136 (53%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M YSG GY G+Q N KTIEGD+ +A AG +++ + + +
Sbjct: 126 VAVMVGYSGTGYKGMQI----------NNEEKTIEGDLFKAFVAAGAISKANADDHKKSS 175
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A ++SLKL +E + IN +LP+QIR+ I+R F+ C+
Sbjct: 176 LVRCARTDKGVHAAGNVISLKLIIEDEEIVDKINANLPDQIRVWGIQRTNNSFSCYQTCD 235
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y PTY P
Sbjct: 236 SRWYEYLLPTYCLLPP 251
>gi|448533280|ref|XP_003870598.1| Pus1 protein [Candida orthopsilosis Co 90-125]
gi|380354953|emb|CCG24469.1| Pus1 protein [Candida orthopsilosis]
Length = 554
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 101/167 (60%), Gaps = 1/167 (0%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGL 196
T+ +R++P++ ++ ++QY+GTHNFHNFT + D S RYI+ PFV +
Sbjct: 323 TRRAYRISPERLERFRSTMQQYKGTHNFHNFTIGKSYKDTSSKRYIIDTTVSDPFVINNT 382
Query: 197 ELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQ 256
E I++KI GQSFMLHQIRKM+ +A + R LI+ F + ++P AP LGLLLE
Sbjct: 383 EWISIKIHGQSFMLHQIRKMICMATLVIRCDLPIGLIDDCFEPTKINIPKAPALGLLLEN 442
Query: 257 VHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITE 303
+D YN K +D +++++F KE+ +F+ KFI + E+ E
Sbjct: 443 PVFDAYNYKL-RDHAYDAINFDAFKKEMLDFKMKFIYDKIYDEEVKE 488
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 86/137 (62%), Gaps = 12/137 (8%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVT-EDSFNTPQNIQ 60
A+M Y G GY GLQ + G+KTIE D+ EA +KAG ++ E+S + ++
Sbjct: 94 AVMLGYCGTGYNGLQIQ--------NEPGVKTIEKDLYEAFYKAGAISLENSLDLKKS-G 144
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEAN--KEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
FQR ARTDKGV A +VSLK+ E K+ IN+HLP+QIRI I+R TKGF+ + C+
Sbjct: 145 FQRTARTDKGVHAAGNVVSLKMIIEDPDLKDKINQHLPDQIRIWGIQRTTKGFDCRKMCS 204
Query: 119 ARTYSYTCPTYAFATPQ 135
+R Y Y PTY+ +P+
Sbjct: 205 SRVYEYLLPTYSLISPK 221
>gi|310791388|gb|EFQ26915.1| tRNA pseudouridine synthase A [Glomerella graminicola M1.001]
Length = 614
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 102/167 (61%), Gaps = 1/167 (0%)
Query: 138 KDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE-QPFVKDGL 196
K +R+TP++ + LQA L +Y GT NFHN+T ++ DPS R+I SF QP
Sbjct: 389 KRRYRVTPERLSQLQAALSEYCGTINFHNYTVQKSFKDPSAKRHIKSFQVNTQPIQIRDT 448
Query: 197 ELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQ 256
E ++LK+ GQSFM+HQIRKMVG+A + R T + I +++G + +P APGLGLLLE+
Sbjct: 449 EWVSLKVHGQSFMMHQIRKMVGMASLVVRCATPLERIRQSYGPTRIAIPKAPGLGLLLER 508
Query: 257 VHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITE 303
+D YN++ + E++ F + D ++ F+ K I + + E E
Sbjct: 509 PVFDAYNRRAKDNFGKETIDFSKYDDKLQAFKDKQIYQRIFEVEEQE 555
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 73/136 (53%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M YSG GY G+Q N KTIEGD+ +A AG +++ + + +
Sbjct: 126 VAVMVGYSGTGYKGMQI----------NNEEKTIEGDLFKAFVAAGAISKANADDHKKSS 175
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A ++SLKL +E + IN +LPEQIR+ I+R F+ C+
Sbjct: 176 LVRCARTDKGVHAAGNVISLKLIIEDEDIVDKINANLPEQIRVWGIQRTNNSFSCYQTCD 235
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y PTY P
Sbjct: 236 SRWYEYLLPTYCLLPP 251
>gi|330924858|ref|XP_003300809.1| hypothetical protein PTT_12161 [Pyrenophora teres f. teres 0-1]
gi|311324870|gb|EFQ91095.1| hypothetical protein PTT_12161 [Pyrenophora teres f. teres 0-1]
Length = 631
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 102/166 (61%), Gaps = 1/166 (0%)
Query: 136 DTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFD-CEQPFVKD 194
D K +R++P++ +QA L Y GTH +HN+T +K D S RYI SF +P + +
Sbjct: 407 DIKKAYRISPERQARVQAALDNYLGTHRYHNYTVHKKYNDKSAQRYIKSFQVAPKPIIIN 466
Query: 195 GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLL 254
E ++LK+ GQSFM+HQIRKMVG+A R T+ ++E +FG + +P APGLGLLL
Sbjct: 467 DTEWLSLKVHGQSFMMHQIRKMVGMAALTVRCGTNPKIMEDSFGNNVVRIPKAPGLGLLL 526
Query: 255 EQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
E+ +D YN K + + ++F++ + ++ EF+ + I + + E
Sbjct: 527 ERPVFDSYNAKLAKQHDRDPINFNKFNDKIEEFKEREIYQRIFREE 572
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 74/136 (54%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M YSG GY G+Q + KTIEGD+ A AG +++ + P+ +
Sbjct: 109 VAVMIGYSGTGYKGMQI----------DNKQKTIEGDLFNAFVAAGAISKANAVDPKKVS 158
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A +VSLKL +E + IN HL +QIR+ I+R F+ C+
Sbjct: 159 LVRCARTDKGVHAAGNVVSLKLIIEDEDIVDKINSHLTDQIRVWGIQRTVGSFSCYQACD 218
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y PT++F P
Sbjct: 219 SRWYEYLIPTHSFLPP 234
>gi|451850213|gb|EMD63515.1| hypothetical protein COCSADRAFT_90927 [Cochliobolus sativus ND90Pr]
Length = 625
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 102/166 (61%), Gaps = 1/166 (0%)
Query: 136 DTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFD-CEQPFVKD 194
D K +R++P++ +QA L +Y GTH +HN+T +K D S RYI SF +P + +
Sbjct: 401 DIKKAYRISPERQARVQAALDKYLGTHKYHNYTVHKKFNDKSAQRYIKSFKVAPKPIIIN 460
Query: 195 GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLL 254
E ++LK+ GQSFM+HQIRKMVG+A R T +++K+FG + +P APGLGLLL
Sbjct: 461 DTEWLSLKVHGQSFMMHQIRKMVGMAALTVRCGTDPAIMDKSFGNEVVRIPKAPGLGLLL 520
Query: 255 EQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
E+ +D YN K + + + F++ + ++ EF+ + I + + E
Sbjct: 521 ERPVFDSYNAKLAKQHARDPIDFNKYNDKIEEFKEREIYQRIFREE 566
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 75/136 (55%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M YSG GY G+Q + KTIEGD+ A AG +++ + + P+
Sbjct: 110 VAVMIGYSGTGYKGMQI----------DNKQKTIEGDLFNAFVAAGAISKANASDPKKSS 159
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK--EAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A +VSLKL E + E IN HLP+QIR+ I+R F+ C+
Sbjct: 160 LVRCARTDKGVHAAGNVVSLKLIIEDDDILEKINSHLPDQIRVWGIQRTIGSFSCYQACD 219
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y PT++F P
Sbjct: 220 SRWYEYLIPTHSFLPP 235
>gi|224061937|ref|XP_002300673.1| predicted protein [Populus trichocarpa]
gi|222842399|gb|EEE79946.1| predicted protein [Populus trichocarpa]
Length = 429
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 98/166 (59%), Gaps = 3/166 (1%)
Query: 154 LLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQI 213
+L Y G+HNFHNFT++ K DPS RYI+SF+ + +G+E + ++ GQSFMLHQI
Sbjct: 246 ILGYYVGSHNFHNFTTRTKAEDPSARRYIVSFEAKTTVNVEGIEFVKCEVVGQSFMLHQI 305
Query: 214 RKMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMH 272
RKM+GVA+AI R + LI+ D ++P AP +GL L++ + YNQK+ H
Sbjct: 306 RKMIGVAVAIMRNCAPESLIQTALQKDVNINVPTAPEVGLYLDECFFTSYNQKWKDS--H 363
Query: 273 ESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF 318
E + + ++E +F+ K I ++ TE E + WL L ++
Sbjct: 364 EEISMKDYEEEAEDFKMKHIYSHIATTEHKEGSVALWLHSLNHRNY 409
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 76/133 (57%), Gaps = 12/133 (9%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ FAY GVGY G+Q +N G KTIEGD+ EALF AG V E P+
Sbjct: 19 IAIFFAYCGVGYQGMQ----------KNPGAKTIEGDLEEALFHAGAVPEQDRGIPKRYD 68
Query: 61 FQRAARTDKGVSALKQIVSLK--LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ R+ARTDKGVSA+ Q+VS + + E ++ +L Q RI KRVT FN+K C+
Sbjct: 69 WARSARTDKGVSAVGQVVSGRFYIDPPGLVERLHSNLSPQFRIFGYKRVTGSFNAKKFCD 128
Query: 119 ARTYSYTCPTYAF 131
R Y Y P +A
Sbjct: 129 RRRYVYLIPVFAL 141
>gi|451993346|gb|EMD85820.1| hypothetical protein COCHEDRAFT_1118028 [Cochliobolus
heterostrophus C5]
Length = 582
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 102/166 (61%), Gaps = 1/166 (0%)
Query: 136 DTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFD-CEQPFVKD 194
D K +R++P++ +QA L +Y GTH +HN+T +K D S RYI SF +P + +
Sbjct: 358 DIKKAYRISPERQARVQAALDKYLGTHKYHNYTVHKKFNDKSAQRYIKSFKVAPKPIIIN 417
Query: 195 GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLL 254
E ++LK+ GQSFM+HQIRKMVG+A R T +++K+FG + +P APGLGLLL
Sbjct: 418 DTEWLSLKVHGQSFMMHQIRKMVGMAALTVRCGTDPAIMDKSFGNEVVRIPKAPGLGLLL 477
Query: 255 EQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
E+ +D YN K + + + F++ + ++ EF+ + I + + E
Sbjct: 478 ERPVFDSYNAKLAKQHARDPIDFNKYNDKIEEFKEREIYQRIFREE 523
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 75/136 (55%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M YSG GY G+Q + KTIEGD+ A AG +++ + + P+
Sbjct: 110 VAVMIGYSGTGYKGMQI----------DNKQKTIEGDLFNAFVAAGAISKANASDPKKSS 159
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK--EAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A +VSLKL E + E IN HLP+QIR+ I+R F+ C+
Sbjct: 160 LVRCARTDKGVHAAGNVVSLKLIIEDDDILEKINSHLPDQIRVWGIQRTIGSFSCYQACD 219
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y PT++F P
Sbjct: 220 SRWYEYLIPTHSFLPP 235
>gi|326527051|dbj|BAK04467.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 572
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 102/185 (55%), Gaps = 8/185 (4%)
Query: 138 KDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLE 197
K+ F T + +LK Y GT NFHNFT++ K DP+ RYI+SF DG++
Sbjct: 359 KNTFAYTDEVKEKFNRILKHYVGTRNFHNFTTRTKAEDPAAKRYIISFTANSVVSLDGID 418
Query: 198 LITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMAPGLGLLLEQ 256
+ ++ GQSFMLHQIRKMVG+A+A+ R + + + F D + ++P AP +GL L++
Sbjct: 419 FVRCEVVGQSFMLHQIRKMVGLAVAVMRNCAPESIYDVAFRKDIRLNVPTAPEVGLHLDE 478
Query: 257 VHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADH 316
+ YN K+ HE++ +E EF+ K+I P++ E E + WL H
Sbjct: 479 CMFASYNSKWMD--THEAVSIEPYAEEAEEFKIKYIFPHIAAMEHKEGAVALWL-----H 531
Query: 317 SFETR 321
S +R
Sbjct: 532 SLNSR 536
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 72/133 (54%), Gaps = 12/133 (9%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ AY G GY G+Q +N G +TIEGD+ EAL++AG V E P +
Sbjct: 50 VAIILAYCGAGYQGMQ----------KNPGARTIEGDLEEALYQAGAVPEADRAAPARYE 99
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK--EAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ RAARTDKGVSA Q+VS + + + +N L QIR RVT F++K C+
Sbjct: 100 WARAARTDKGVSAAAQVVSGRFYVDPPGFIDRLNAKLAPQIRAFGYVRVTNSFSAKKFCD 159
Query: 119 ARTYSYTCPTYAF 131
R Y Y P A
Sbjct: 160 RRRYVYLLPVLAL 172
>gi|147780612|emb|CAN69118.1| hypothetical protein VITISV_031845 [Vitis vinifera]
Length = 559
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 104/187 (55%), Gaps = 3/187 (1%)
Query: 154 LLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQI 213
+L Y GTHNFHNFT++ K DPS R+I+SFD +G+E + ++ GQSFMLHQI
Sbjct: 372 ILGHYVGTHNFHNFTTRIKAEDPSAQRFIVSFDGNTIVTVEGIEFVKCEVVGQSFMLHQI 431
Query: 214 RKMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMH 272
RKM+G+A+AI R + L+E D ++P AP +GL L++ + YN+K+ H
Sbjct: 432 RKMIGLAVAIMRNVAPESLLETALLKDVNINVPTAPEVGLYLDECFFSSYNKKWRDS--H 489
Query: 273 ESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANG 332
E + +E EF+ K + ++ TE E + WL L ++ AA++G
Sbjct: 490 EEVSMKAYAEEAEEFKMKHVYSHIAATEHKEGVVALWLHSLNHRNYPDLCIGDNGAASDG 549
Query: 333 EELQEVT 339
+ +E T
Sbjct: 550 KNGEEET 556
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/133 (45%), Positives = 78/133 (58%), Gaps = 12/133 (9%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ FAY GVGY G+Q +N G KTIEGD+ EALF +G V E P+
Sbjct: 29 IAIFFAYCGVGYQGMQ----------KNPGAKTIEGDLEEALFFSGAVPEQDRGHPKRFD 78
Query: 61 FQRAARTDKGVSALKQIVSLK--LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ R+ARTDKGVSA+ Q+VS + + E +N +LP QIRI KRVT FN+K C+
Sbjct: 79 WARSARTDKGVSAVGQVVSGRFYIDPPGLVERLNSNLPPQIRIFGFKRVTASFNAKKFCD 138
Query: 119 ARTYSYTCPTYAF 131
R Y Y P +A
Sbjct: 139 RRRYVYLIPVFAL 151
>gi|429856152|gb|ELA31077.1| tRNA pseudouridine synthase [Colletotrichum gloeosporioides Nara
gc5]
Length = 473
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 1/169 (0%)
Query: 136 DTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE-QPFVKD 194
+ K +R+TP++ N LQA L +Y GT NFHN+T ++ DPS R+I SF P
Sbjct: 303 NAKRRYRVTPERLNQLQAALNEYCGTINFHNYTVQKTFKDPSAKRHIKSFKVNMSPIQIR 362
Query: 195 GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLL 254
E ++LK+ GQSFM+HQIRKMVG+A + R T + + +++G + +P APGLGLLL
Sbjct: 363 DTEWVSLKVHGQSFMMHQIRKMVGMASLVVRCGTPLERVRQSYGPTRIAIPKAPGLGLLL 422
Query: 255 EQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITE 303
E+ +D YN++ + E++ F + D ++ F+ K I + + E E
Sbjct: 423 ERPVFDAYNRRAQDNFGKETIDFTKYDDKLQAFKDKQIYQRIFEVEEQE 471
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 85/172 (49%), Gaps = 22/172 (12%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M YSG GY G+Q N KTIEGD+ +A AG +++ + + +
Sbjct: 102 VAVMVGYSGTGYKGMQI----------NNEEKTIEGDLFKAFVAAGAISKANADDHKKSS 151
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A ++SLKL +E E IN LPEQIR+ I+R F+ C+
Sbjct: 152 LVRCARTDKGVHAAGNVISLKLIIEDEDVVEKINAALPEQIRVWGIQRTNNSFSCYQTCD 211
Query: 119 ARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSK 170
+R Y Y PTY P PD F + Q + K E H + F SK
Sbjct: 212 SRWYEYLMPTYCLLPPH---------PDSFLWKQLVEKAKEHGH-YEEFQSK 253
>gi|359492954|ref|XP_002284797.2| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Vitis
vinifera]
Length = 503
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 104/187 (55%), Gaps = 3/187 (1%)
Query: 154 LLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQI 213
+L Y GTHNFHNFT++ K DPS R+I+SFD +G+E + ++ GQSFMLHQI
Sbjct: 316 ILGHYVGTHNFHNFTTRIKAEDPSAQRFIVSFDGNTIVTVEGIEFVKCEVVGQSFMLHQI 375
Query: 214 RKMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMH 272
RKM+G+A+AI R + L+E D ++P AP +GL L++ + YN+K+ H
Sbjct: 376 RKMIGLAVAIMRNVAPESLLETALLKDVNINVPTAPEVGLYLDECFFSSYNKKWRDS--H 433
Query: 273 ESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANG 332
E + +E EF+ K + ++ TE E + WL L ++ AA++G
Sbjct: 434 EEVSMKAYAEEAEEFKMKHVYSHIAATEHKEGVVALWLHSLNHRNYPDLCIGDNGAASDG 493
Query: 333 EELQEVT 339
+ +E T
Sbjct: 494 KNGEEET 500
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/133 (45%), Positives = 78/133 (58%), Gaps = 12/133 (9%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ FAY GVGY G+Q +N G KTIEGD+ EALF +G V E P+
Sbjct: 41 IAIFFAYCGVGYQGMQ----------KNPGAKTIEGDLEEALFFSGAVPEQDRGHPKRFD 90
Query: 61 FQRAARTDKGVSALKQIVSLK--LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ R+ARTDKGVSA+ Q+VS + + E +N +LP QIRI KRVT FN+K C+
Sbjct: 91 WARSARTDKGVSAVGQVVSGRFYIDPPGLVERLNSNLPPQIRIFGFKRVTASFNAKKFCD 150
Query: 119 ARTYSYTCPTYAF 131
R Y Y P +A
Sbjct: 151 RRRYVYLIPVFAL 163
>gi|413938173|gb|AFW72724.1| hypothetical protein ZEAMMB73_421497 [Zea mays]
Length = 565
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 101/178 (56%), Gaps = 3/178 (1%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGL 196
TK F T + +LK Y GTHNFHNFT++ K DP+ R+I+SF ++ DG+
Sbjct: 338 TKSTFSYTDEVKERFNRILKYYIGTHNFHNFTTRTKAEDPAAKRFIISFAADRVVSLDGI 397
Query: 197 ELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMAPGLGLLLE 255
+ + ++ GQSFMLHQIRKM+G+A+A+ R + + + F D ++P AP +GL L+
Sbjct: 398 DFVRCEVVGQSFMLHQIRKMIGLAVAVMRNCAPESIYDVAFRKDVNLNVPTAPEVGLYLD 457
Query: 256 QVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELL 313
+ + YN+K+ HE++ +E EF+ K+I ++ E E + WL L
Sbjct: 458 ECMFTSYNKKWKDS--HEAVSMEPYSEEAEEFKVKYIFTHIAAMEHKEGAVALWLHSL 513
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 73/133 (54%), Gaps = 12/133 (9%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ Y G GY G+Q +N G +TIEGD+ EAL++AG V E + P+
Sbjct: 54 VAILLGYCGAGYQGMQ----------KNPGARTIEGDLEEALYQAGAVPEADRSAPRRYD 103
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK--EAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ RAARTDKGVSA Q+VS + + + +N L QIR RVT FN+K C+
Sbjct: 104 WARAARTDKGVSAAAQVVSGRFYVDPPGFIDRLNAQLAPQIRAYGYVRVTNSFNAKKFCD 163
Query: 119 ARTYSYTCPTYAF 131
R Y Y P +A
Sbjct: 164 RRRYLYLLPVFAL 176
>gi|223948195|gb|ACN28181.1| unknown [Zea mays]
gi|413938174|gb|AFW72725.1| tRNA pseudouridine synthase family protein [Zea mays]
Length = 562
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 101/178 (56%), Gaps = 3/178 (1%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGL 196
TK F T + +LK Y GTHNFHNFT++ K DP+ R+I+SF ++ DG+
Sbjct: 335 TKSTFSYTDEVKERFNRILKYYIGTHNFHNFTTRTKAEDPAAKRFIISFAADRVVSLDGI 394
Query: 197 ELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMAPGLGLLLE 255
+ + ++ GQSFMLHQIRKM+G+A+A+ R + + + F D ++P AP +GL L+
Sbjct: 395 DFVRCEVVGQSFMLHQIRKMIGLAVAVMRNCAPESIYDVAFRKDVNLNVPTAPEVGLYLD 454
Query: 256 QVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELL 313
+ + YN+K+ HE++ +E EF+ K+I ++ E E + WL L
Sbjct: 455 ECMFTSYNKKWKDS--HEAVSMEPYSEEAEEFKVKYIFTHIAAMEHKEGAVALWLHSL 510
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 73/133 (54%), Gaps = 12/133 (9%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ Y G GY G+Q +N G +TIEGD+ EAL++AG V E + P+
Sbjct: 54 VAILLGYCGAGYQGMQ----------KNPGARTIEGDLEEALYQAGAVPEADRSAPRRYD 103
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK--EAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ RAARTDKGVSA Q+VS + + + +N L QIR RVT FN+K C+
Sbjct: 104 WARAARTDKGVSAAAQVVSGRFYVDPPGFIDRLNAQLAPQIRAYGYVRVTNSFNAKKFCD 163
Query: 119 ARTYSYTCPTYAF 131
R Y Y P +A
Sbjct: 164 RRRYLYLLPVFAL 176
>gi|322705939|gb|EFY97522.1| tRNA pseudouridine synthase [Metarhizium anisopliae ARSEF 23]
Length = 612
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 103/168 (61%), Gaps = 1/168 (0%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE-QPFVKDG 195
K +R++P++ LQ++L +Y GT+NFHNFT ++ DPS R+I SF +P + G
Sbjct: 380 AKRRYRVSPERLQRLQSVLDKYTGTYNFHNFTIQKTFSDPSARRHIKSFTVNPKPVIIGG 439
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
E ++LK+ GQSFM+HQIRKMVG+A + R T+ D + ++ + +P APGLGLLLE
Sbjct: 440 TEWLSLKVHGQSFMMHQIRKMVGLASLMVRCGTALDRVADSYQEQKMAIPKAPGLGLLLE 499
Query: 256 QVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITE 303
+ +D YN++ E++ F + ++ + F+ K I + + E E
Sbjct: 500 RPVFDNYNRRAKDTLGKETIDFGKYEERLEAFKQKHIYSRIFEVEEKE 547
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 70/136 (51%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M YSG GY G+Q N TIE D+ A A +++ + + P+
Sbjct: 117 VAVMIGYSGTGYKGMQV----------NGDEPTIERDLFRAFIDAKAISKANADDPRKSS 166
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A ++SLKL +E E IN HLPEQIRI I+R FN C+
Sbjct: 167 LARCARTDKGVHAAGNVISLKLIIEDEDIVEKINAHLPEQIRIWGIQRTNNSFNCYQYCD 226
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y P+Y P
Sbjct: 227 SRFYEYLLPSYCLLPP 242
>gi|302141694|emb|CBI18897.3| unnamed protein product [Vitis vinifera]
Length = 419
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 104/187 (55%), Gaps = 3/187 (1%)
Query: 154 LLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQI 213
+L Y GTHNFHNFT++ K DPS R+I+SFD +G+E + ++ GQSFMLHQI
Sbjct: 232 ILGHYVGTHNFHNFTTRIKAEDPSAQRFIVSFDGNTIVTVEGIEFVKCEVVGQSFMLHQI 291
Query: 214 RKMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMH 272
RKM+G+A+AI R + L+E D ++P AP +GL L++ + YN+K+ H
Sbjct: 292 RKMIGLAVAIMRNVAPESLLETALLKDVNINVPTAPEVGLYLDECFFSSYNKKWRDS--H 349
Query: 273 ESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANG 332
E + +E EF+ K + ++ TE E + WL L ++ AA++G
Sbjct: 350 EEVSMKAYAEEAEEFKMKHVYSHIAATEHKEGVVALWLHSLNHRNYPDLCIGDNGAASDG 409
Query: 333 EELQEVT 339
+ +E T
Sbjct: 410 KNGEEET 416
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 27 RNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLK--LPE 84
+N G KTIEGD+ EALF +G V E P+ + R+ARTDKGVSA+ Q+VS + +
Sbjct: 3 KNPGAKTIEGDLEEALFFSGAVPEQDRGHPKRFDWARSARTDKGVSAVGQVVSGRFYIDP 62
Query: 85 EANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAF 131
E +N +LP QIRI KRVT FN+K C+ R Y Y P +A
Sbjct: 63 PGLVERLNSNLPPQIRIFGFKRVTASFNAKKFCDRRRYVYLIPVFAL 109
>gi|448091329|ref|XP_004197304.1| Piso0_004551 [Millerozyma farinosa CBS 7064]
gi|448095890|ref|XP_004198335.1| Piso0_004551 [Millerozyma farinosa CBS 7064]
gi|359378726|emb|CCE84985.1| Piso0_004551 [Millerozyma farinosa CBS 7064]
gi|359379757|emb|CCE83954.1| Piso0_004551 [Millerozyma farinosa CBS 7064]
Length = 549
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 95/163 (58%), Gaps = 1/163 (0%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELIT 200
+ ++ ++ N + L QYEG HNFHNFT + DPS RY+ PFV +G E ++
Sbjct: 302 YNISTERLNIFREALNQYEGAHNFHNFTLGKTFKDPSSVRYMKKLTVSDPFVIEGTEWVS 361
Query: 201 LKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYD 260
+KI GQSFMLHQIRKM+ +A + R + I FG + ++P AP LGLLLE YD
Sbjct: 362 IKIHGQSFMLHQIRKMIAMAALVIRTGCPLERISDCFGPIKVNIPKAPALGLLLENPVYD 421
Query: 261 LYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITE 303
YN + G + ++ F + +E+++F+ K+I + E+ E
Sbjct: 422 GYNTTLEKHG-YNAIDFSKYQEEMDKFKMKYIYDKIYAEEVKE 463
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 77/137 (56%), Gaps = 10/137 (7%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A M Y G GY G+Q + N ++TIEGD+ +A AG ++ ++ + +
Sbjct: 71 VACMIGYCGTGYNGMQIQ--------NNPNIETIEGDLFKAFVAAGAISPENADDLKKNG 122
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F RAARTDKGV A ++S KL +E E IN LP+QIR+ I+R K F+ + C+
Sbjct: 123 FMRAARTDKGVHAAGNVISCKLIIEDEDIIEKINAQLPDQIRVWGIERTNKSFDCRKMCS 182
Query: 119 ARTYSYTCPTYAFATPQ 135
+R Y Y PTY+ P+
Sbjct: 183 SRVYEYLLPTYSLLPPK 199
>gi|241956578|ref|XP_002421009.1| tNA-uridine isomerase, putative; tRNA pseudouridine synthase,
putative; tRNA pseudouridylate synthase, putative
[Candida dubliniensis CD36]
gi|223644352|emb|CAX41165.1| tNA-uridine isomerase, putative [Candida dubliniensis CD36]
Length = 488
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 110/381 (28%), Positives = 169/381 (44%), Gaps = 98/381 (25%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEA--------------LFKAG 46
+A+M Y G GY G+Q + + +KTIE DI +A L K+G
Sbjct: 41 VAVMLGYCGSGYNGMQVQ--------NDPNVKTIEKDIYDAMTKAGAISLENSVDLKKSG 92
Query: 47 F---------------------VTED-----SFNT--PQNIQFQRAARTDKGV------- 71
F + ED N P+ I+ RT KG
Sbjct: 93 FQRAARTDKGVHAAGNVISLKMIIEDPNIINKINDLLPKQIRIWGIQRTTKGFDCRKCCS 152
Query: 72 -------------------SALKQIVS---LKLPE--EANKEAINEHLPEQIRILS---- 103
S L +++ LK PE E ++E I+ +++IL
Sbjct: 153 SRIYEYLLPTFSLLPPKPKSILSELIKEKKLKNPELFEDDQEGIDWWENVKMKILQSGIT 212
Query: 104 ---IKRVTKGFNSKNNCNA--------RTYSYTCPTYAFATPQD-TKDDFRLTPDQFNFL 151
I +T +N + R S+T T ++ ++ +R++ + N
Sbjct: 213 QEQIDSITSSYNDNDEQQVTGDEKDGERELSFTKLIKQIKTIENQSRRSYRISSIRLNQF 272
Query: 152 QALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLH 211
+ ++KQYEGTHNFHNFT + D S +R+I+ PFV +G E I++KI GQSFMLH
Sbjct: 273 REVMKQYEGTHNFHNFTIGKPFKDTSANRFIIKTLISDPFVIEGTEWISIKIHGQSFMLH 332
Query: 212 QIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGM 271
QIRKM+ +A I R ++I F + ++P AP LGLLLE +D YN K +
Sbjct: 333 QIRKMIAMATLIIRLNLPSNIINNFFQSKKINIPKAPALGLLLENPVFDGYNIKLTKSD- 391
Query: 272 HESLHFHEVDKEVNEFRHKFI 292
++ + F + KE+N+F+ K+I
Sbjct: 392 YQPIDFTKFSKEMNDFKMKYI 412
>gi|226506356|ref|NP_001150144.1| LOC100283773 [Zea mays]
gi|195637102|gb|ACG38019.1| tRNA pseudouridine synthase family protein [Zea mays]
Length = 561
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 101/178 (56%), Gaps = 3/178 (1%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGL 196
TK F T + +LK Y GTHNFHNFT++ K DP+ R+I+SF ++ DG+
Sbjct: 334 TKTTFSYTDEVKERFNRILKYYIGTHNFHNFTTRTKAEDPAAKRFIISFAADRVVSLDGI 393
Query: 197 ELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMAPGLGLLLE 255
+ + ++ GQSFMLHQIRKM+G+A+A+ R + + + F D ++P AP +GL L+
Sbjct: 394 DFVRCEVVGQSFMLHQIRKMIGLAVAVIRNCAPESIYDVAFRKDVNLNVPTAPEVGLYLD 453
Query: 256 QVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELL 313
+ + YN+K+ HE++ +E EF+ K+I ++ E E + WL L
Sbjct: 454 ECMFTSYNKKWKDS--HEAVFMEPYSEEAEEFKVKYIFTHIAAMEHKEGAVALWLHSL 509
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 73/133 (54%), Gaps = 12/133 (9%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ Y G GY G+Q +N G +TIEGD+ EAL++AG V E + P+
Sbjct: 54 VAILLGYCGAGYQGMQ----------KNPGARTIEGDLEEALYQAGAVPEADRSAPRRYD 103
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK--EAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ RAARTDKGVSA Q+VS + + + +N L QIR RVT FN+K C+
Sbjct: 104 WARAARTDKGVSAAAQVVSGRFYVDPPGFIDRLNAQLAPQIRAYGYVRVTNSFNAKKFCD 163
Query: 119 ARTYSYTCPTYAF 131
R Y Y P +A
Sbjct: 164 RRRYLYLLPVFAL 176
>gi|145529301|ref|XP_001450439.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124418050|emb|CAK83042.1| unnamed protein product [Paramecium tetraurelia]
Length = 297
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 120/248 (48%), Gaps = 38/248 (15%)
Query: 39 MEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLPEEA--------NK-- 88
M L K V+E + ++ + I R ARTD+GV AL +VSLKL + NK
Sbjct: 17 MMHLLKQNLVSELNADSIKKIGVSRGARTDRGVHALCNVVSLKLQIDQKYCSSMTNNKLV 76
Query: 89 -----------EAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDT 137
+ +N LP I++ +IK VT+ FN K+ + R Y+Y P+++
Sbjct: 77 DKWNIDWDLLIQELNSQLPSDIKVNAIKHVTQSFNVKHQADQRMYNYISPSFSTV----- 131
Query: 138 KDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLE 197
+++Q + QY GTHNFHN+TSK++ DPS R+I F + +
Sbjct: 132 -----------DYVQNICNQYLGTHNFHNYTSKKEYNDPSSKRFIQDFRVQNLNFHNE-N 179
Query: 198 LITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQV 257
+ I G SFM HQIRK++G I + I+ TF Q L +AP GL L ++
Sbjct: 180 YLKFTILGNSFMYHQIRKIIGTIYQIVQEKKDLSFIQDTFSQQQHSLYIAPQQGLYLREI 239
Query: 258 HYDLYNQK 265
+ YN K
Sbjct: 240 KFTGYNMK 247
>gi|429962506|gb|ELA42050.1| tRNA pseudouridine synthase A [Vittaforma corneae ATCC 50505]
Length = 365
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 99/359 (27%), Positives = 153/359 (42%), Gaps = 65/359 (18%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ ++ Y+G GY GLQ N +KTIE +I++ L + +TE + PQ I
Sbjct: 5 VGLIIGYNGEGYHGLQY----------NNDLKTIEKEIIDILLRNECITEINSKDPQKID 54
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKEAI----NEHLPEQIRILSIKRVTKGFNSKNN 116
+ +RTDKGV A +VS+K+ +E E E L + + + + ++ K F
Sbjct: 55 LKSCSRTDKGVHASFNVVSVKIIQEPTLELFEILKREFLDKGMILYKLIKLPKRFLGHKC 114
Query: 117 CNARTYSYTCPTYAF----------------------------------ATPQDTKDDFR 142
+R Y Y PTY A P T
Sbjct: 115 ARSRIYKYVLPTYVLQDSNFEEECKNLEIKDKAANDNNEESSDDCSEEKAKPARTYSKSE 174
Query: 143 L------TPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGL 196
L D + ++ Y GT N+HNFT KR + S R+I +PF+ +
Sbjct: 175 LDKVRGCKSDSIDLFTKMMNCYVGTKNYHNFTLKR--TEGSAQRFIKQITVSEPFLDSDV 232
Query: 197 ELITLKIKGQSFMLHQIRKMVGVAMAIARGFTS--KDLIEKTFGLDQFDLPMAPGLGLLL 254
E I +KI GQSF+LHQIRKM+ A+ R + + EK + +P P L L
Sbjct: 233 EYIEIKIHGQSFLLHQIRKMISFAVLNCRYARNNYQANFEKALSKEDVHIPKCPSQYLFL 292
Query: 255 EQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELL 313
+ ++ +N K + G E + +E DKEV F + I P +++ E + W + L
Sbjct: 293 NHIFFEDFNTKRSEQGA-EKIEINESDKEV--FEKEKIYPSVLRLE----NIYEWFKYL 344
>gi|336258196|ref|XP_003343916.1| hypothetical protein SMAC_09382 [Sordaria macrospora k-hell]
gi|380087004|emb|CCC14503.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 634
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 100/164 (60%), Gaps = 2/164 (1%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE-QPFVKDGLELI 199
+R+TP + LQ L QY GTHNFHN+T + DPS R+I SF P + E +
Sbjct: 410 YRVTPARLEKLQEALNQYLGTHNFHNYTILKSHTDPSARRHIKSFQVNPTPIRINDTEWL 469
Query: 200 TLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHY 259
+LK+ GQSFM+HQIRKMV +A+ I R LI +++G + +P APGLGL+LE+ +
Sbjct: 470 SLKVHGQSFMMHQIRKMVAMAVLIVRCGAPMSLINESYGPRRISIPKAPGLGLMLERPVF 529
Query: 260 DLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITE 303
D+ N+K+ + G E + F + D+++ +F+ + I + + E E
Sbjct: 530 DVSNKKFKELG-REPIDFGKWDEQIQKFKDEHIYKRMFELEEKE 572
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 79/137 (57%), Gaps = 12/137 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ Y+G GY G+Q N KTIEGD+ A KAG +++ + + P+
Sbjct: 128 VAVLIGYAGTGYHGIQI----------NHKEKTIEGDLFAAFVKAGAISKANADDPKKSS 177
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A ++SLKL +E E IN HLP+QI++ I+RVT GF+ C+
Sbjct: 178 LVRCARTDKGVHAAANVLSLKLIVEDEDIVEKINSHLPDQIKVWGIQRVTNGFSCYQACD 237
Query: 119 ARTYSYTCPTYAFATPQ 135
+R Y Y P+YA PQ
Sbjct: 238 SRWYEYLMPSYALLPPQ 254
>gi|119480651|ref|XP_001260354.1| tRNA pseudouridine synthase, putative [Neosartorya fischeri NRRL
181]
gi|119408508|gb|EAW18457.1| tRNA pseudouridine synthase, putative [Neosartorya fischeri NRRL
181]
Length = 577
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 100/166 (60%), Gaps = 1/166 (0%)
Query: 136 DTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQ-PFVKD 194
+ K +R+ + + LQA L +Y GT+NF+N+T ++ DPS R+I SF ++ P + +
Sbjct: 333 EAKRAYRIPAARLDRLQATLDKYVGTNNFYNYTIQKTYTDPSAKRFIKSFKVDRNPIIIN 392
Query: 195 GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLL 254
G E ++LK+ GQSFM+HQIRKMV +A + R I ++G + +P APGLGLLL
Sbjct: 393 GTEWLSLKVHGQSFMMHQIRKMVAMATMLVRAGCDPQRIVDSYGPTKIAIPKAPGLGLLL 452
Query: 255 EQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
E+ +D YN+K E + F + KE++EF+ + I + + E
Sbjct: 453 ERPIFDGYNKKATTTLGKEPIDFSKYQKEIDEFKQREIYDRIFREE 498
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 72/138 (52%), Gaps = 16/138 (11%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ Y+G GY G+Q + KTIEGD+ A AG +++ + P+
Sbjct: 81 VAVLIGYAGTGYHGMQL----------SDKEKTIEGDLFTAFVAAGAISKANAADPKKSS 130
Query: 61 FQRAARTDKGVSALKQIVSLKL----PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
R ARTDKGV A +VSLKL P+ K INE L QIR+ I+ KGF+
Sbjct: 131 LVRCARTDKGVHAAGNVVSLKLIVEDPDLIKK--INEKLCPQIRVWDIQVTNKGFSCYQM 188
Query: 117 CNARTYSYTCPTYAFATP 134
C++R Y Y P+Y F P
Sbjct: 189 CDSRVYEYLIPSYCFLPP 206
>gi|121698285|ref|XP_001267772.1| tRNA pseudouridine synthase, putative [Aspergillus clavatus NRRL 1]
gi|119395914|gb|EAW06346.1| tRNA pseudouridine synthase, putative [Aspergillus clavatus NRRL 1]
Length = 568
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 127/240 (52%), Gaps = 6/240 (2%)
Query: 136 DTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQ-PFVKD 194
+ K +R+ + + LQA L +Y GT+NF+N+T ++ DPS RYI +F ++ + +
Sbjct: 322 EAKRAYRIPSIRLDRLQATLDKYIGTNNFYNYTIQKTHGDPSAKRYIKTFQVDRNSILIN 381
Query: 195 GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLL 254
G E ++LK+ GQSFM+HQIRKMV +A + R I +++G + +P APGLGLLL
Sbjct: 382 GTEWLSLKVHGQSFMMHQIRKMVAMATMLVRAGGDPARIVESYGPTKIAVPKAPGLGLLL 441
Query: 255 EQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLA 314
E+ +D YN+K + + F + +KE+NEF+ + I + + E + +
Sbjct: 442 ERPIFDGYNKKATTTLGKDPIDFSKYEKEINEFKQREIYDRIFREEEQANAFSVFFNHID 501
Query: 315 DHSFETRAAKAALAAANGEELQEVTDGEEEEDEEDRGGVRHSNGTSLAPKPTPAVEKETN 374
S ET + A + TDG E E +E G S +LA AVE E++
Sbjct: 502 HFSQETFLYVTSGGVAASAQPNPPTDGTEAEQKEVGQGTTKSRKEALA-----AVEAESD 556
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 72/138 (52%), Gaps = 16/138 (11%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ Y+G GY G+Q + KTIEGD+ A AG +++ + P+
Sbjct: 81 VAVLIGYAGTGYHGMQL----------SDKEKTIEGDLFAAFVAAGAISKANAADPKKSS 130
Query: 61 FQRAARTDKGVSALKQIVSLKL----PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
R ARTDKGV A +VSLKL P+ K INE L QIR+ ++ KGF+
Sbjct: 131 LVRCARTDKGVHAAGNVVSLKLIVEDPDIVKK--INEQLCPQIRVWDVQVTNKGFSCYQM 188
Query: 117 CNARTYSYTCPTYAFATP 134
C++R Y Y P+Y F P
Sbjct: 189 CDSRVYEYLIPSYCFLPP 206
>gi|50294374|ref|XP_449598.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528912|emb|CAG62574.1| unnamed protein product [Candida glabrata]
Length = 317
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 140/289 (48%), Gaps = 40/289 (13%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
MA++ Y G GY G+Q N TI+ ++ +AL +++ + +
Sbjct: 1 MALVLGYLGTGYQGIQ----------YNPPAHTIDNELFKALVATNCISQSNSDDFSKSS 50
Query: 61 FQRAARTDKGVSALKQIVSLKL-----PEEANKEAINEHLPEQIRILSIKRVTKGFNSKN 115
F RA RTDKGV AL +V+LK+ P++ E +NE LP+ IRI + V K FN++
Sbjct: 51 FSRATRTDKGVHALTNLVALKMQRYEVPQQVKAE-LNEILPDDIRIWDVVPVKKKFNARV 109
Query: 116 NCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
R Y Y PT+ + L+ Q + + + GTHN++NFT +RK +
Sbjct: 110 MAGTRHYRYVIPTFLLQCGPHSD----LSTSQLARFKNIWNMFLGTHNYYNFTPRRKDTN 165
Query: 176 ---PSCSRYIMSFDCEQPFVKDG-LELITLKIKGQSFMLHQIRKMVGVAMA----IARGF 227
P R++ S PF G + +++ I GQSF+LHQIRKMV A++ +
Sbjct: 166 ADSPQNMRHMYSIQVSDPFTIAGSTQWLSIAIHGQSFLLHQIRKMVHYALSEYHRSSSDT 225
Query: 228 TSKDLIE-------KTFGLD----QFDLPMAPGLGLLLEQVHYDLYNQK 265
S +L+E LD Q+ +P+AP GL L ++ YN +
Sbjct: 226 KSMELLETVDPDLTSATALDTPTEQY-IPLAPAAGLYLHHPTFEGYNNQ 273
>gi|213401227|ref|XP_002171386.1| tRNA pseudouridine synthase [Schizosaccharomyces japonicus yFS275]
gi|211999433|gb|EEB05093.1| tRNA pseudouridine synthase [Schizosaccharomyces japonicus yFS275]
Length = 503
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 121/243 (49%), Gaps = 21/243 (8%)
Query: 131 FATPQDTK-------------DDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPS 177
+ PQDTK +R+TP++ + K++EG HNFHNFT + D S
Sbjct: 254 YDIPQDTKLSRVLKHAEIHELRKYRITPERLRVAREAFKRFEGVHNFHNFTVGQSFHDRS 313
Query: 178 CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTF 237
+R I SF P + +G E ++LK+ GQSFMLHQIRKMV + M + R I +TF
Sbjct: 314 SNRVIKSFTVSDPIIIEGTEWLSLKVHGQSFMLHQIRKMVALIMLVVRTGCPLGRIGETF 373
Query: 238 GLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLV 297
+ ++P PGLGLLLE + YN+ + + F + D+ + F+ ++I ++
Sbjct: 374 RKPRVNIPRGPGLGLLLESPFFQGYNEHKAAENNRPPIDFTKYDETIEAFKKEYIYSHIF 433
Query: 298 KTEITEKPMLAWLELLADHSFETRA--AKAALAAANGEELQEV------TDGEEEEDEED 349
K E + +L + + +T A + + A+ E +E+ E+E+DE+
Sbjct: 434 KEEAASQVFHGFLTFIDSYIGDTFAYLSDRGIETADKTEAEELPKLPKEISSEDEDDEQA 493
Query: 350 RGG 352
G
Sbjct: 494 AAG 496
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 79/149 (53%), Gaps = 12/149 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A + Y G GY G+Q N KTIEGD+ EA K G V+ + + P+ +
Sbjct: 46 VACLVGYCGTGYHGMQL----------NPPNKTIEGDLFEAFVKVGAVSSYNADDPKKVA 95
Query: 61 FQRAARTDKGVSALKQIVSLK--LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
RAARTDKGV A +++LK L +E + +NE LP IR+ + R FN + C
Sbjct: 96 LARAARTDKGVHAAGNVITLKLILEDENLIQKVNEVLPPTIRVWDVIRTINSFNPRTYCE 155
Query: 119 ARTYSYTCPTYAFATPQDTKDDFRLTPDQ 147
+R Y Y P+YAFA P+ T + +L D
Sbjct: 156 SRIYEYLLPSYAFAPPKPTSNLGKLIIDN 184
>gi|71033963|ref|XP_766623.1| tRNA pseudouridine synthase [Theileria parva strain Muguga]
gi|68353580|gb|EAN34340.1| tRNA pseudouridine synthase, putative [Theileria parva]
Length = 475
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 105/397 (26%), Positives = 167/397 (42%), Gaps = 86/397 (21%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
+ F Y G Y G Q + + +KT+EG + LF+ G + E N +Q
Sbjct: 72 VISFGYVGTAYHGYQKQVEYKT--GEMDKVKTVEGTLENCLFRIGAINEAFRNMTHKLQM 129
Query: 62 QRAARTDKGVSAL----------------KQIVSL--KLPEEANKE-------------- 89
+ +RTDKGV A +VS P E+N E
Sbjct: 130 SKCSRTDKGVHAACTYLGGRFNIDVEDLSDDVVSQAKNHPSESNGELSNNLESTKDQKLS 189
Query: 90 -------AINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTY----AFATPQD-- 136
+N LPE IR I+RVTKGF+++ C+ R Y Y P + F P +
Sbjct: 190 NEDKFVLRLNSVLPEDIRCFKIQRVTKGFDARTLCSKRKYEYIIPEWILSKKFVVPNEDH 249
Query: 137 ----------------TKDDFRL----------------TPDQFNFLQALLKQYEGTHNF 164
T+D +L T L+ +L Y+GTH+F
Sbjct: 250 ENLFRNLELFFEENLKTRDTIKLSKLNESLYEVKGEYEKTEIDHKRLEEILNFYQGTHSF 309
Query: 165 HNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIA 224
HNFT K+K + SR+I + +++ L+++ + I GQSF+ +QIRKM+ +A+ +
Sbjct: 310 HNFTVKQKEDINNSSRFIHKIYIKSDKLQE-LDVVKILIVGQSFLYNQIRKMISLALQVY 368
Query: 225 RGFTSKDLIEKTFGLDQ---FDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVD 281
K+ +E F L++ ++ + P GL+L ++D YN + + +V
Sbjct: 369 LKIAPKNSLE--FSLNKSHILNINLVPSEGLILHHPYFDHYNTNRCNPPEVPYIEYKDVK 426
Query: 282 KEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF 318
+V EF+ + I P VK I WLE + + F
Sbjct: 427 PKVEEFKREHIYPE-VKRSIDSDLWEGWLETILKYPF 462
>gi|119192942|ref|XP_001247077.1| tRNA pseudouridine synthase 1, putative [Coccidioides immitis RS]
gi|392863687|gb|EAS35543.2| tRNA pseudouridine(38-40) synthase [Coccidioides immitis RS]
Length = 597
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 98/164 (59%), Gaps = 1/164 (0%)
Query: 138 KDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQ-PFVKDGL 196
K +R+ P + +Q +L Y GT NFHN+T ++ D S R I SF+ + P + DG
Sbjct: 365 KKAYRIHPARLARVQEVLDLYIGTRNFHNYTIQKTFRDASARRVIKSFNISKDPIIIDGT 424
Query: 197 ELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQ 256
E ++LK+ GQSFM+HQIRKMV +A + R T I +++G + +P APGLGLLLE+
Sbjct: 425 EWLSLKVHGQSFMMHQIRKMVAMAALVVRCGTDPQRITQSYGPQKIPIPKAPGLGLLLER 484
Query: 257 VHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
+D YN+K + + F + +KE+ EF+++ I + + E
Sbjct: 485 PIFDTYNKKATNELDKNPIEFGKYEKEIEEFKNREIYQRIFREE 528
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 74/138 (53%), Gaps = 16/138 (11%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ YSG GY G+Q + KTIEG+I AL AG +++ + P+
Sbjct: 116 VAVLLGYSGTGYHGMQM----------SAKEKTIEGEIFPALVAAGAISKANAMDPKKSS 165
Query: 61 FQRAARTDKGVSALKQIVSLKL----PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
F R ARTDKGV A ++SLKL P+ NK +N L QIRI I+ KGF+
Sbjct: 166 FVRCARTDKGVHAAGNVISLKLIIEDPDLVNK--VNNILSPQIRIWGIEPTNKGFSCYQF 223
Query: 117 CNARTYSYTCPTYAFATP 134
C++R Y Y PT+ F P
Sbjct: 224 CDSRIYEYLIPTHCFLPP 241
>gi|303312455|ref|XP_003066239.1| tRNA pseudouridine synthase, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240105901|gb|EER24094.1| tRNA pseudouridine synthase, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 597
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 98/164 (59%), Gaps = 1/164 (0%)
Query: 138 KDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQ-PFVKDGL 196
K +R+ P + +Q +L Y GT NFHN+T ++ D S R I SF+ + P + DG
Sbjct: 365 KKAYRIHPARLARVQEVLDLYIGTRNFHNYTIQKTFRDASARRVIKSFNISKDPIIIDGT 424
Query: 197 ELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQ 256
E ++LK+ GQSFM+HQIRKMV +A + R T I +++G + +P APGLGLLLE+
Sbjct: 425 EWLSLKVHGQSFMMHQIRKMVAMAALVVRCGTDPQRITQSYGPQKIPIPKAPGLGLLLER 484
Query: 257 VHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
+D YN+K + + F + +KE+ EF+++ I + + E
Sbjct: 485 PIFDTYNKKATNELDKNPIEFGKYEKEIEEFKNREIYQRIFREE 528
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 74/138 (53%), Gaps = 16/138 (11%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ YSG GY G+Q + KTIEG+I AL AG +++ + P+
Sbjct: 116 VAVLLGYSGTGYHGMQM----------SAKEKTIEGEIFPALVAAGAISKANAMDPKKSS 165
Query: 61 FQRAARTDKGVSALKQIVSLKL----PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
F R ARTDKGV A ++SLKL P+ NK +N L QIRI I+ KGF+
Sbjct: 166 FVRCARTDKGVHAAGNVISLKLIIEDPDLVNK--VNNILSPQIRIWGIEPTNKGFSCYQF 223
Query: 117 CNARTYSYTCPTYAFATP 134
C++R Y Y PT+ F P
Sbjct: 224 CDSRIYEYLIPTHCFLPP 241
>gi|320033682|gb|EFW15629.1| tRNA pseudouridine synthase [Coccidioides posadasii str. Silveira]
Length = 597
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 98/164 (59%), Gaps = 1/164 (0%)
Query: 138 KDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQ-PFVKDGL 196
K +R+ P + +Q +L Y GT NFHN+T ++ D S R I SF+ + P + DG
Sbjct: 365 KKAYRIHPARLARVQEVLDLYIGTRNFHNYTIQKTFRDASARRVIKSFNISKDPIIIDGT 424
Query: 197 ELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQ 256
E ++LK+ GQSFM+HQIRKMV +A + R T I +++G + +P APGLGLLLE+
Sbjct: 425 EWLSLKVHGQSFMMHQIRKMVAMAALVVRCGTDPQRITQSYGPQKIPIPKAPGLGLLLER 484
Query: 257 VHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
+D YN+K + + F + +KE+ EF+++ I + + E
Sbjct: 485 PIFDTYNKKATNELDKNPIEFGKYEKEIEEFKNREIYQRIFREE 528
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 74/138 (53%), Gaps = 16/138 (11%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ YSG GY G+Q + KTIEG+I AL AG +++ + P+
Sbjct: 116 VAVLLGYSGTGYHGMQM----------SAKEKTIEGEIFPALVAAGAISKANAMDPKKSS 165
Query: 61 FQRAARTDKGVSALKQIVSLKL----PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
F R ARTDKGV A ++SLKL P+ NK +N L QIRI I+ KGF+
Sbjct: 166 FVRCARTDKGVHAAGNVISLKLIIEDPDLVNK--VNNILSPQIRIWGIEPTNKGFSCYQF 223
Query: 117 CNARTYSYTCPTYAFATP 134
C++R Y Y PT+ F P
Sbjct: 224 CDSRIYEYLIPTHCFLPP 241
>gi|71000998|ref|XP_755180.1| tRNA pseudouridine synthase [Aspergillus fumigatus Af293]
gi|66852818|gb|EAL93142.1| tRNA pseudouridine synthase, putative [Aspergillus fumigatus Af293]
gi|159129271|gb|EDP54385.1| tRNA pseudouridine synthase, putative [Aspergillus fumigatus A1163]
Length = 577
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 100/166 (60%), Gaps = 1/166 (0%)
Query: 136 DTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQ-PFVKD 194
+ K +R+ + + LQA L +Y GT+NF+N+T ++ DPS R+I SF ++ P + +
Sbjct: 333 EAKRAYRIPVARLDRLQATLDKYVGTNNFYNYTIQKTYTDPSAKRFIKSFKVDRNPIIIN 392
Query: 195 GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLL 254
G E ++LK+ GQSFM+HQIRKMV +A + R I ++G + +P APGLGLLL
Sbjct: 393 GTEWLSLKVHGQSFMMHQIRKMVAMATMLVRAGCDPQRIVDSYGPTKIAIPKAPGLGLLL 452
Query: 255 EQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
E+ +D YN++ E + F + KE++EF+ + I + + E
Sbjct: 453 ERPIFDGYNKRATTTLGKEPIDFSKYQKEIDEFKQREIYDRIFREE 498
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 72/138 (52%), Gaps = 16/138 (11%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ Y+G GY G+Q + KTIEGD+ A AG +++ + P+
Sbjct: 81 VAVLIGYAGTGYHGMQL----------SDKEKTIEGDLFTAFVAAGAISKANAADPKKSS 130
Query: 61 FQRAARTDKGVSALKQIVSLKL----PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
R ARTDKGV A +VSLKL P+ K INE L QIR+ I+ KGF+
Sbjct: 131 LVRCARTDKGVHAAGNVVSLKLIIEDPDLIKK--INEKLCPQIRVWDIQVTNKGFSCYQM 188
Query: 117 CNARTYSYTCPTYAFATP 134
C++R Y Y P+Y F P
Sbjct: 189 CDSRVYEYLIPSYCFLPP 206
>gi|85091723|ref|XP_959041.1| hypothetical protein NCU07528 [Neurospora crassa OR74A]
gi|28920438|gb|EAA29805.1| hypothetical protein NCU07528 [Neurospora crassa OR74A]
Length = 625
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 98/164 (59%), Gaps = 2/164 (1%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE-QPFVKDGLELI 199
+R+T + LQ L QY GTHNFHN+T + DPS R+I SF P + E +
Sbjct: 401 YRVTAPRLEKLQEALNQYLGTHNFHNYTILKSHTDPSARRHIKSFQVNPTPIRINDTEWL 460
Query: 200 TLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHY 259
+LK+ GQSFM+HQIRKMV +A+ I R L+ +++G + +P APGLGL+LE+ +
Sbjct: 461 SLKVHGQSFMMHQIRKMVAMAVLIVRCGAPMSLVNESYGPRRISIPKAPGLGLMLERPVF 520
Query: 260 DLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITE 303
D+ N+K+ + G E + F + DKE+ F+ + I + + E E
Sbjct: 521 DVSNKKFKELG-KEPIDFGKWDKEIQAFKDEHIYKRMFELEEKE 563
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 79/137 (57%), Gaps = 12/137 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ Y+G GY G+Q N KTIEGD+ A KAG +++ + + P+
Sbjct: 123 VAVLIGYAGTGYHGIQI----------NHKEKTIEGDLFAAFVKAGAISKANADDPKKSS 172
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A ++SLKL +E + IN HLP+QI++ I+RVT GF+ C+
Sbjct: 173 LVRCARTDKGVHAAANVLSLKLIVEDEDIVDKINSHLPDQIKVWGIQRVTNGFSCYQACD 232
Query: 119 ARTYSYTCPTYAFATPQ 135
+R Y Y P+YA PQ
Sbjct: 233 SRWYEYLMPSYALLPPQ 249
>gi|169619633|ref|XP_001803229.1| hypothetical protein SNOG_13015 [Phaeosphaeria nodorum SN15]
gi|111058695|gb|EAT79815.1| hypothetical protein SNOG_13015 [Phaeosphaeria nodorum SN15]
Length = 621
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 6/222 (2%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFD-CEQPFVKDG 195
K +R++P++ +QA L Y GT +HN+T ++K D S RYI SF +P + +
Sbjct: 398 AKKSYRISPERQARVQAALNNYLGTRKYHNYTVQKKFSDKSAQRYIKSFKVAPKPIIIND 457
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
E ++LK+ GQSFM+HQIRKMVG+ R ++ D++ ++FG +P APGLGLLLE
Sbjct: 458 TEWLSLKVHGQSFMMHQIRKMVGMVALTVRCGSNPDIMIESFGNTIVRIPKAPGLGLLLE 517
Query: 256 QVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLAD 315
+ +D YN+K + E + F++ + ++ EF+ + I + + E A+ L +
Sbjct: 518 RPVFDSYNEKSAKQAGREKVDFNKYNDKIEEFKEREIYQRIFREEAQGNQFNAFFTHLDN 577
Query: 316 HS-----FETRAAKAALAAANGEELQEVTDGEEEEDEEDRGG 352
+ + T A + G + + E+ EDE GG
Sbjct: 578 YKDPQFLYLTSGGVEATKKSLGNKSAQAKYEEDSEDENASGG 619
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 75/136 (55%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M YSG GY G+Q + KTIEGD+ A AG +++ + + P+
Sbjct: 107 VAVMIGYSGTGYKGMQI----------DNKQKTIEGDLFTAFVAAGAISKANADDPKKSS 156
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A ++SLKL EE E IN HL EQIR+ I+R T F+ C+
Sbjct: 157 LVRCARTDKGVHAAGNVISLKLIIEEEDIVEKINSHLSEQIRVWGIQRTTGSFSCYQACD 216
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y PT+AF P
Sbjct: 217 SRWYEYLIPTHAFLPP 232
>gi|336470149|gb|EGO58311.1| hypothetical protein NEUTE1DRAFT_64057 [Neurospora tetrasperma FGSC
2508]
gi|350290158|gb|EGZ71372.1| pseudouridine synthase [Neurospora tetrasperma FGSC 2509]
Length = 629
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 98/164 (59%), Gaps = 2/164 (1%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE-QPFVKDGLELI 199
+R+T + LQ L QY GTHNFHN+T + DPS R+I SF P + E +
Sbjct: 405 YRVTAPRLEKLQEALNQYLGTHNFHNYTILKSHTDPSARRHIKSFQVNPTPIRINDTEWL 464
Query: 200 TLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHY 259
+LK+ GQSFM+HQIRKMV +A+ I R L+ +++G + +P APGLGL+LE+ +
Sbjct: 465 SLKVHGQSFMMHQIRKMVAMAVLIVRCGAPMSLVNESYGPRRISIPKAPGLGLMLERPVF 524
Query: 260 DLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITE 303
D+ N+K+ + G E + F + DKE+ F+ + I + + E E
Sbjct: 525 DVSNKKFKELG-KEPIDFGKWDKEIQAFKDEHIYKRMFELEEKE 567
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 79/137 (57%), Gaps = 12/137 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ Y+G GY G+Q N KTIEGD+ A KAG +++ + + P+
Sbjct: 123 VAVLIGYAGTGYHGIQI----------NHKEKTIEGDLFAAFVKAGAISKANADDPKKSS 172
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A ++SLKL +E + IN HLP+QI++ I+RVT GF+ C+
Sbjct: 173 LVRCARTDKGVHAAANVLSLKLIVEDEDIVDKINSHLPDQIKVWGIQRVTNGFSCYQACD 232
Query: 119 ARTYSYTCPTYAFATPQ 135
+R Y Y P+YA PQ
Sbjct: 233 SRWYEYLMPSYALLPPQ 249
>gi|401826036|ref|XP_003887112.1| pseudouridine synthase [Encephalitozoon hellem ATCC 50504]
gi|392998270|gb|AFM98131.1| pseudouridine synthase [Encephalitozoon hellem ATCC 50504]
Length = 345
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 89/332 (26%), Positives = 153/332 (46%), Gaps = 56/332 (16%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
++ Y G GY GLQ N+ + TIE +++ L G ++E + P+ I
Sbjct: 6 GLLVGYDGSGYHGLQF----------NKELDTIEKKVVDCLLSVGAISERNAEDPKKIHI 55
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLP----EQIRILSIKRVTKGFNSKNNC 117
+ ++RTDKGV A ++S+K+ E ++ E I + I ++TK
Sbjct: 56 KSSSRTDKGVHAAFNLISVKIEVCITPELVSRLRTLLSQEGIHLYDIVKLTKSTVPSKQA 115
Query: 118 NARTYSYTCPTY----------------------AFATPQDTKDD-------FRLTPDQF 148
+RTY Y PT+ A +D +D +R +PD
Sbjct: 116 ISRTYEYVVPTFFLTEGNFSEEAEALKQKDGEHRAGGIKRDYPEDVVESVTGYRSSPDDI 175
Query: 149 NFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSF 208
+++L++Y GT +FHNFT + RYI S P+V + +E + + I GQSF
Sbjct: 176 KAFESILQKYIGTKDFHNFTKLNN--EKGTKRYIKSITITDPYVSEDVEYVRISITGQSF 233
Query: 209 MLHQIRKMVGVAMAIARGFTSKDLIEKTFGL----DQFDLPMAPGLGLLLEQVHYDLYNQ 264
+LHQIRKMV A+ + + S++ +++ F + +P P LLL++ ++++
Sbjct: 234 LLHQIRKMVLFAVLLCK--YSRNSVDQKFSIAFNKQNVHVPKGPSEYLLLDK---PVFHK 288
Query: 265 KYGQDGMHESLHFHEVDKEVNEFRHKFILPYL 296
DG E + + D+E E++ FI P +
Sbjct: 289 LRRGDGSTEDIDVSDSDRE--EYKRSFIYPRI 318
>gi|294655697|ref|XP_002770167.1| DEHA2C04312p [Debaryomyces hansenii CBS767]
gi|199430534|emb|CAG85917.4| DEHA2C04312p [Debaryomyces hansenii CBS767]
Length = 528
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 97/166 (58%), Gaps = 7/166 (4%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELIT 200
+ ++ ++ + +KQYEG+HNFHNFT + DPS RY+ PFV +G E ++
Sbjct: 303 YSVSKERLELFREAMKQYEGSHNFHNFTLGKLYKDPSARRYMKLTTVSDPFVIEGTEWVS 362
Query: 201 LKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYD 260
+KI GQSFMLHQIRKM+ +A+ + R I+ FG + ++P AP LGLLLE Y+
Sbjct: 363 IKIHGQSFMLHQIRKMISMAVLVIRTGCPISRIQDCFGPTKINIPKAPALGLLLENPVYE 422
Query: 261 LYN---QKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITE 303
YN +K+G + + F +E+++F+ KFI + E+ E
Sbjct: 423 GYNGMLEKFG----YNKIEFEPYKEEIDKFKMKFIYDKIYGEEVKE 464
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 81/137 (59%), Gaps = 10/137 (7%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A M Y G GY G+Q + N +KTIEGD+ +A KAG ++ ++ + +
Sbjct: 73 VACMIGYCGTGYNGMQIQ--------NNLDVKTIEGDLFQAFVKAGAISPENADDLKKNG 124
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F RAARTDKGV A ++S KL +E E IN+ LP+QIR+ I+R K F+ + C+
Sbjct: 125 FMRAARTDKGVHAAGNVISCKLIIEDEDILEKINKELPDQIRVWGIERTNKSFDCRKMCS 184
Query: 119 ARTYSYTCPTYAFATPQ 135
+R Y Y PTY+F +P+
Sbjct: 185 SRVYEYLLPTYSFLSPK 201
>gi|385304790|gb|EIF48795.1| trna pseudouridine synthase [Dekkera bruxellensis AWRI1499]
Length = 379
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 86/130 (66%)
Query: 136 DTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDG 195
+ ++ +R+ ++ + + +K YEG+HNFHNFT+ + DPS RY+ + +PFV
Sbjct: 238 EAREKYRIKKEKLDVFRDTMKLYEGSHNFHNFTNGKDFRDPSAKRYMKNITVSEPFVIGN 297
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
LE +++KI GQSFMLHQIRKM+G+A I R D I ++F + + ++P AP LGLLLE
Sbjct: 298 LEWVSIKIHGQSFMLHQIRKMIGLASLIVRTGCPIDKIRESFRMPKVNIPKAPALGLLLE 357
Query: 256 QVHYDLYNQK 265
+ YD +N+K
Sbjct: 358 RPVYDGFNEK 367
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 81/137 (59%), Gaps = 12/137 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A + Y G GY G+Q N KTIEGD+ +A+ +AG +++++ N +
Sbjct: 35 VACLIGYCGAGYHGMQI----------NPPNKTIEGDLFKAMVEAGAISKNNSNDLKKSG 84
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F RAARTDKGV A ++SLK+ +E E IN+ LPEQIR+ +RV K F+ + C+
Sbjct: 85 FMRAARTDKGVHAAGNVISLKMIVEDEDVVEKINQALPEQIRVWGYQRVNKSFDCRKMCS 144
Query: 119 ARTYSYTCPTYAFATPQ 135
+R Y Y PTY+F P+
Sbjct: 145 SRIYEYLMPTYSFLPPR 161
>gi|238883128|gb|EEQ46766.1| tRNA pseudouridine synthase 1 [Candida albicans WO-1]
Length = 461
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 63/142 (44%), Positives = 89/142 (62%), Gaps = 1/142 (0%)
Query: 151 LQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFML 210
+ ++KQYEGTHNFHNFT + D S +R+++ PFV +G E I++KI GQSFML
Sbjct: 237 FREVMKQYEGTHNFHNFTVGKPFKDTSANRFMIKTIVSDPFVIEGTEWISIKIHGQSFML 296
Query: 211 HQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDG 270
HQIRKM+ +A + R +I F + ++P AP LGLLLE +D YN K +
Sbjct: 297 HQIRKMIAMAALVVRLSLPCGIINNFFQSTKINIPKAPALGLLLENPVFDGYNIKLTKSD 356
Query: 271 MHESLHFHEVDKEVNEFRHKFI 292
+E + F + DKE+NEF+ K+I
Sbjct: 357 -YEPIDFTKFDKEMNEFKMKYI 377
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 80/136 (58%), Gaps = 14/136 (10%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
M Y G GY G+Q + + +KTIE DI +A+ AG ++ ++ + FQR
Sbjct: 1 MLGYCGTGYNGMQVQ--------NDPNVKTIEKDIYDAMATAGAISAENAVDLKKSGFQR 52
Query: 64 AARTDKGVSALKQIVSLKL----PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
AARTDKGV A ++SLK+ PE NK IN+ LP+QIRI I+R TKGF+ + C++
Sbjct: 53 AARTDKGVHAAGNVISLKMIIEDPEIINK--INDLLPKQIRIWGIQRTTKGFDCRKCCSS 110
Query: 120 RTYSYTCPTYAFATPQ 135
R Y Y PT++ P+
Sbjct: 111 RIYEYLLPTFSLLPPK 126
>gi|302656568|ref|XP_003020036.1| hypothetical protein TRV_05897 [Trichophyton verrucosum HKI 0517]
gi|291183816|gb|EFE39412.1| hypothetical protein TRV_05897 [Trichophyton verrucosum HKI 0517]
Length = 570
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 98/157 (62%), Gaps = 2/157 (1%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQ-PFVKDG 195
TK+++R+ P++ + A L Y GT NFHN+T ++ DPS R I SF + P V +G
Sbjct: 343 TKNEYRIPPERLARINAALALYVGTKNFHNYTIQKTFRDPSARRLIKSFKISRDPVVING 402
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
E ++LK+ GQSFM+HQIRKMV + + R IE+++ + +P APGLGLLLE
Sbjct: 403 TEWLSLKVHGQSFMMHQIRKMVAMVALLVRCGADIKRIEESYQNSRIPIPKAPGLGLLLE 462
Query: 256 QVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFI 292
+ +D YN+K +D E L F + +KE++EF+ K I
Sbjct: 463 RPIFDGYNKK-AKDLGRELLDFDKYEKEMDEFKLKEI 498
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 72/136 (52%), Gaps = 16/136 (11%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
+M YSG GY G+Q C + KTIEGD+ A A +++ + P+ F
Sbjct: 103 VMLGYSGTGYHGMQ--------LCPTE--KTIEGDLFAAFVAANAISKANAVDPKKSSFV 152
Query: 63 RAARTDKGVSALKQIVSLKL----PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A +VSLKL P+ K INE L QIR+ I TKGF++ C+
Sbjct: 153 RCARTDKGVHAAGNVVSLKLIIEDPDIVQK--INEKLNPQIRVWGIIPATKGFSAYQFCD 210
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y P++ F P
Sbjct: 211 SRMYEYLIPSHCFLPP 226
>gi|320583409|gb|EFW97622.1| tRNA pseudouridine synthase [Ogataea parapolymorpha DL-1]
Length = 491
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 93/152 (61%), Gaps = 1/152 (0%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELIT 200
++++ ++ N L+ LK Y G HNFHNFT+ + DPS R++ + P V + E ++
Sbjct: 289 YKISTEKLNLLRDALKIYLGPHNFHNFTNGKDYKDPSAIRFMKNITVSDPIVVNDQEWVS 348
Query: 201 LKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYD 260
+KI GQSFMLHQIRKM+ +A + R IE+ FG ++ ++P AP LGLLLEQ Y+
Sbjct: 349 IKIHGQSFMLHQIRKMIAMATLVVRTGCPLARIEEAFGPEKVNIPKAPALGLLLEQPVYE 408
Query: 261 LYNQKYGQDGMHESLHFHEVDKEVNEFRHKFI 292
YN K + G + L F + E++EF+ K I
Sbjct: 409 SYNAKLEKFG-YNPLSFDKFAAEIDEFKRKHI 439
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 78/137 (56%), Gaps = 12/137 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A +Y G GY G+Q N KTIEGD+ +A KAG +++++ N +
Sbjct: 81 VACYLSYCGTGYHGMQM----------NPPAKTIEGDLFDAFVKAGAISKNNSNDLKKSS 130
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK--EAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F RAARTDKGV A ++SLKL E E IN +LP+QIR +RV K F+ + C+
Sbjct: 131 FMRAARTDKGVHAAGNVISLKLIIEDPDLVEKINSYLPDQIRFWGYERVNKSFDCRKVCS 190
Query: 119 ARTYSYTCPTYAFATPQ 135
+R Y Y PTY+F P+
Sbjct: 191 SRIYEYLMPTYSFLPPK 207
>gi|68487205|ref|XP_712546.1| hypothetical protein CaO19.10981 [Candida albicans SC5314]
gi|68487266|ref|XP_712516.1| hypothetical protein CaO19.3477 [Candida albicans SC5314]
gi|74679680|sp|Q59S63.1|PUS1_CANAL RecName: Full=tRNA pseudouridine synthase 1; AltName: Full=tRNA
pseudouridylate synthase 1; AltName: Full=tRNA-uridine
isomerase 1
gi|46433909|gb|EAK93335.1| hypothetical protein CaO19.3477 [Candida albicans SC5314]
gi|46433941|gb|EAK93366.1| hypothetical protein CaO19.10981 [Candida albicans SC5314]
Length = 450
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/142 (44%), Positives = 89/142 (62%), Gaps = 1/142 (0%)
Query: 151 LQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFML 210
+ ++KQYEGTHNFHNFT + D S +R+++ PFV +G E I++KI GQSFML
Sbjct: 226 FREVMKQYEGTHNFHNFTVGKPFKDTSANRFMIKTIVSDPFVIEGTEWISIKIHGQSFML 285
Query: 211 HQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDG 270
HQIRKM+ +A + R +I F + ++P AP LGLLLE +D YN K +
Sbjct: 286 HQIRKMIAMAALVVRLSLPCGIINNFFQSTKINIPKAPALGLLLENPVFDGYNIKLTKSD 345
Query: 271 MHESLHFHEVDKEVNEFRHKFI 292
+E + F + DKE+NEF+ K+I
Sbjct: 346 -YEPIDFTKFDKEMNEFKMKYI 366
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 53/79 (67%), Gaps = 6/79 (7%)
Query: 61 FQRAARTDKGVSALKQIVSLKL----PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
FQRAARTDKGV A ++SLK+ PE NK IN+ LP+QIRI I+R TKGF+ +
Sbjct: 41 FQRAARTDKGVHAAGNVISLKMIIEDPEIINK--INDLLPKQIRIWGIQRATKGFDCRKC 98
Query: 117 CNARTYSYTCPTYAFATPQ 135
C++R Y Y PT++ P+
Sbjct: 99 CSSRIYEYLLPTFSLLPPK 117
>gi|149236317|ref|XP_001524036.1| tRNA pseudouridine synthase 1 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452412|gb|EDK46668.1| tRNA pseudouridine synthase 1 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 445
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 103/178 (57%), Gaps = 9/178 (5%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKD------ 194
+R++P + + ++QYEGTHNFHNFT + P SRYI+S +PFV D
Sbjct: 227 YRISPTKLAHFRQAMQQYEGTHNFHNFTVGKTYKSPDSSRYIISAKVSEPFVIDDSENSS 286
Query: 195 -GLELITLKIKGQSFMLHQIRKMVGVAMAIAR-GFTSKDLIEKTFGLDQFDLPMAPGLGL 252
E +++KI GQSFMLHQIRKM+ +A R ++ L+ F ++ ++P AP LGL
Sbjct: 287 HATEWVSVKIHGQSFMLHQIRKMICMAALTVRCKLPAEKLLAMCFKPEKLNIPKAPALGL 346
Query: 253 LLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWL 310
LLE +D YN K Q+ +E ++F + +KE+ +F+ K I + E+ E +++
Sbjct: 347 LLENPVFDAYN-KILQENSYEPINFEQYEKEMLDFKMKNIYDKIYNDEVKENTFVSFF 403
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 82/135 (60%), Gaps = 12/135 (8%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVT-EDSFNTPQNIQFQ 62
M Y G GY GLQ + + +KTIE D+ AL KAG ++ E+S + ++ FQ
Sbjct: 1 MLGYCGTGYNGLQIQ--------NDPNVKTIERDLYTALHKAGAISLENSLDLKKS-GFQ 51
Query: 63 RAARTDKGVSALKQIVSLKLPEEAN--KEAINEHLPEQIRILSIKRVTKGFNSKNNCNAR 120
R ARTDKGV A +VSLK+ E KE INEHLP+QIRI I+R TKGF+ + C++R
Sbjct: 52 RCARTDKGVHAAGNVVSLKMIIEDPEIKEKINEHLPQQIRIWGIQRTTKGFDCRKMCSSR 111
Query: 121 TYSYTCPTYAFATPQ 135
Y Y PTY+ P+
Sbjct: 112 VYEYLLPTYSLLNPK 126
>gi|150865014|ref|XP_001384060.2| hypothetical protein PICST_58964 [Scheffersomyces stipitis CBS
6054]
gi|149386270|gb|ABN66031.2| predicted protein, partial [Scheffersomyces stipitis CBS 6054]
Length = 476
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 91/152 (59%), Gaps = 1/152 (0%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELIT 200
+ ++ ++ + +KQYEGTHNFHNFT + DPS R++ PF+ +G E ++
Sbjct: 302 YTVSTERLELFRQAMKQYEGTHNFHNFTIGKAFKDPSSKRFMKETTVSDPFIIEGTEWVS 361
Query: 201 LKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYD 260
+KI GQSFMLHQIRKM+ +A+ + R I F + ++P AP LGLLLE Y+
Sbjct: 362 IKIHGQSFMLHQIRKMIAMAVLVIRTGCPISRIHDCFSSTKINIPKAPALGLLLENPVYE 421
Query: 261 LYNQKYGQDGMHESLHFHEVDKEVNEFRHKFI 292
YNQ Q +E + F + + E+++F+ K+I
Sbjct: 422 AYNQTL-QKNDYEPIDFDKYEAEMDKFKMKYI 452
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 78/139 (56%), Gaps = 14/139 (10%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M Y G GY G+Q + + TIE D+ EA AG V+ ++ +
Sbjct: 82 VAVMIGYCGTGYNGMQ--------LQNDPKIPTIERDLYEAFAAAGAVSPENAMDIKKSG 133
Query: 61 FQRAARTDKGVSALKQIVSLKL----PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
F RAARTDKGV A ++SLKL PE K INE LP+QIRI I+RVTK F+ +
Sbjct: 134 FMRAARTDKGVHAAGNVISLKLIIEDPEILAK--INEKLPDQIRIWGIQRVTKSFDCRKM 191
Query: 117 CNARTYSYTCPTYAFATPQ 135
C++R Y Y PTY+ P+
Sbjct: 192 CSSRVYEYLLPTYSLLPPK 210
>gi|322695818|gb|EFY87620.1| tRNA pseudouridine synthase [Metarhizium acridum CQMa 102]
Length = 592
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 120/222 (54%), Gaps = 6/222 (2%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE-QPFVKDG 195
K +R++P++ LQ +L +Y GT+NFHNFT ++ DPS R+I SF +P +
Sbjct: 369 AKRRYRVSPERLRRLQQVLDKYTGTYNFHNFTIQKTFSDPSARRHIKSFTVNPKPIIIGD 428
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
E ++LK+ GQSFM+HQIRKMVG+A + R T+ D + ++ + +P APGLGLLLE
Sbjct: 429 TEWLSLKVHGQSFMMHQIRKMVGLASLMVRCGTTLDRVGDSYQEQKMAIPKAPGLGLLLE 488
Query: 256 QVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELL-- 313
+ ++ YN++ E++ F + ++ + F+ K I + + E E + +
Sbjct: 489 RPVFENYNRRARDSLGKETIDFGKYEERLEAFKQKHIYSRIFEVEEKENTFHGFYNQIDQ 548
Query: 314 --ADHSFETRAAKAALAAANGE-ELQEVTDGEEEEDEEDRGG 352
A+H A +A + E + EV +EDE GG
Sbjct: 549 FKANHFLWLSAGGTKVAELHKESDKTEVDKALGDEDENPEGG 590
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 70/137 (51%), Gaps = 12/137 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M YSG GY G+Q N TIE D+ A A +++ + + P+
Sbjct: 117 VAVMIGYSGTGYKGMQV----------NGDEPTIERDLFRAFIDAKAISKANADDPRKSS 166
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A ++SLKL +E + IN HLPEQIRI I+R FN C+
Sbjct: 167 LARCARTDKGVHAAGNVISLKLIIEDEDIVDKINAHLPEQIRIWGIQRTNNSFNCYQYCD 226
Query: 119 ARTYSYTCPTYAFATPQ 135
+R Y Y P+Y P
Sbjct: 227 SRFYEYLLPSYCLLPPH 243
>gi|358392098|gb|EHK41502.1| hypothetical protein TRIATDRAFT_228328 [Trichoderma atroviride IMI
206040]
Length = 566
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 101/168 (60%), Gaps = 1/168 (0%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE-QPFVKDG 195
K +R++P++ LQ L QY GT+NFHN+T ++ DPS R+I SF +P +
Sbjct: 341 AKRAYRVSPERIQRLQEALNQYVGTNNFHNYTVQKSHGDPSSKRHIRSFVVNPKPIIIGD 400
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
E ++LK+ GQSFM+HQIRKMVG+A + R T+ D I++++G + +P PGLGLLLE
Sbjct: 401 TEWLSLKVHGQSFMMHQIRKMVGLATLMVRCGTTLDRIKESYGPQKMAIPKMPGLGLLLE 460
Query: 256 QVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITE 303
+ ++ YN++ + E + F ++++ F+ + I + E E
Sbjct: 461 RPVFENYNKRATETLGREDIDFDRYEEKLEAFKQEQIYSRIFGVEEKE 508
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 73/136 (53%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M Y+G GY G+Q N +TIE D+ +A KAG +++ + + P+
Sbjct: 77 VAVMIGYAGTGYKGMQL----------NGDEETIERDLFQAFVKAGAISKANADDPRKSS 126
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A ++SLKL +E + INE LP QIR+ I+R +N C+
Sbjct: 127 LARCARTDKGVHAAGNVISLKLIIEDEDIVDKINEALPPQIRVWGIQRTNNSYNCYQYCD 186
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y P+Y P
Sbjct: 187 SRWYEYLMPSYCLLPP 202
>gi|302509324|ref|XP_003016622.1| hypothetical protein ARB_04913 [Arthroderma benhamiae CBS 112371]
gi|291180192|gb|EFE35977.1| hypothetical protein ARB_04913 [Arthroderma benhamiae CBS 112371]
Length = 573
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 97/157 (61%), Gaps = 2/157 (1%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQ-PFVKDG 195
K+++R+ P++ + A L Y GT NFHN+T ++ DPS R I SF + P V +G
Sbjct: 346 AKNEYRIPPERLARINAALALYVGTKNFHNYTIQKTFRDPSARRLIKSFKISRDPVVING 405
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
E ++LK+ GQSFM+HQIRKMV + + R IE+++ + +P APGLGLLLE
Sbjct: 406 TEWLSLKVHGQSFMMHQIRKMVAMVALLVRCGADIKRIEESYQNSRIPIPKAPGLGLLLE 465
Query: 256 QVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFI 292
+ +D YN+K +D E L F + +KE++EF+ K I
Sbjct: 466 RPIFDGYNKK-AKDLGRELLDFDKYEKEMDEFKLKEI 501
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 72/136 (52%), Gaps = 16/136 (11%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
+M YSG GY G+Q C + KTIEGD+ A A +++ + P+ F
Sbjct: 103 VMLGYSGTGYHGMQ--------LCPTE--KTIEGDLFAAFVAANAISKANAVDPKKSSFV 152
Query: 63 RAARTDKGVSALKQIVSLKL----PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A +VSLKL P+ K INE L QIR+ I TKGF++ C+
Sbjct: 153 RCARTDKGVHAAGNVVSLKLIIEDPDIVQK--INEKLNPQIRVWGIIPATKGFSAYQFCD 210
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y P++ F P
Sbjct: 211 SRMYEYLIPSHCFLPP 226
>gi|358377645|gb|EHK15328.1| hypothetical protein TRIVIDRAFT_13584, partial [Trichoderma virens
Gv29-8]
Length = 505
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 101/168 (60%), Gaps = 1/168 (0%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE-QPFVKDG 195
K +R++P++ LQ L +YEGT+NFHN+T ++ DPS R+I SF +P +
Sbjct: 312 AKRAYRVSPERIQRLQEALNKYEGTNNFHNYTVQKSHGDPSSKRHIRSFVVNPKPIIIGD 371
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
E ++LK+ GQSFM+HQIRKMVG+ + R TS D I +++G + +P PGLGLLLE
Sbjct: 372 TEWLSLKVHGQSFMMHQIRKMVGLVTLMVRCGTSLDRITESYGPKKMAIPKMPGLGLLLE 431
Query: 256 QVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITE 303
+ ++ YN++ + E + F + ++++ F+ + I + E E
Sbjct: 432 RPVFENYNKRAKETLGREDIDFDKYNEKLEAFKQEQIYSRIFGVEEKE 479
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 73/136 (53%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M Y+G GY G+Q N +TIE D+ +A KAG +++ + + P+
Sbjct: 61 VAVMIGYAGTGYKGMQL----------NGDEETIERDLFQAFIKAGAISKANADDPRKSS 110
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK--EAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A ++SLKL E + + INE LP QIR+ I+R +N C+
Sbjct: 111 LARCARTDKGVHAAGNVISLKLIIEEDDIVDKINEALPAQIRVWGIQRTNNSYNCYQYCD 170
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y P+Y P
Sbjct: 171 SRWYEYLMPSYCLLPP 186
>gi|134080163|emb|CAK46143.1| unnamed protein product [Aspergillus niger]
Length = 567
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 98/165 (59%), Gaps = 2/165 (1%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFD-CEQPFVKDG 195
K +R+ + +Q L +Y GT+NF N+T ++ DPS R+I SF EQP + +G
Sbjct: 330 AKRAYRIPAQRLARVQEALDKYVGTNNFFNYTIQKTHADPSSKRHIKSFKMAEQPIIING 389
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
E ++LK+ GQSFM+HQIRKMV +A + R I +T+G ++ +P APGLGLLLE
Sbjct: 390 TEWLSLKVHGQSFMMHQIRKMVAMAAMVVRCGCDPQRIVETYGANKIAIPKAPGLGLLLE 449
Query: 256 QVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
+ +D YN+K + G + + F + +NEF+ + I + + E
Sbjct: 450 RPVFDSYNRKTHETG-KDPIDFDKHADTINEFKQREIYDRIFREE 493
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 72/139 (51%), Gaps = 13/139 (9%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ YSG GY G+Q ++ KTIEG++ A AG +++ + P+
Sbjct: 121 VAVLLGYSGTGYKGMQL----------SETEKTIEGELFAAFVAAGAISKANATDPKKSS 170
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK--EAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A IVSLKL E + + INE L QIR+ I K F+S C+
Sbjct: 171 LVRCARTDKGVHAAGNIVSLKLIVEDDDIIQKINEKLSSQIRVWDILVTNKSFSSYQLCD 230
Query: 119 ARTYSYTCPTYAFATPQDT 137
+R Y Y T+ F P +
Sbjct: 231 SRIYEYLI-THCFLPPHPS 248
>gi|326469581|gb|EGD93590.1| tRNA pseudouridine synthase [Trichophyton tonsurans CBS 112818]
Length = 582
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 97/157 (61%), Gaps = 2/157 (1%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQ-PFVKDG 195
K+++R+ P++ + A L Y GT NFHN+T ++ DPS R I SF + P V +G
Sbjct: 345 AKNEYRIPPERLARINAALALYVGTKNFHNYTIQKTFRDPSARRLIKSFKISRDPVVING 404
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
E ++LK+ GQSFM+HQIRKMV + + R IE+++ + +P APGLGLLLE
Sbjct: 405 TEWLSLKVHGQSFMMHQIRKMVAMVALLVRCGADIKRIEESYQNSRIPIPKAPGLGLLLE 464
Query: 256 QVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFI 292
+ +D YN+K +D E L F + +KE++EF+ K I
Sbjct: 465 RPIFDGYNKK-AKDLGRELLDFDKYEKEMDEFKLKEI 500
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 72/136 (52%), Gaps = 16/136 (11%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
+M YSG GY G+Q C + KTIEGD+ A A +++ + P+ F
Sbjct: 103 VMLGYSGTGYHGMQ--------LCPTE--KTIEGDLFAAFVAANAISKANAVDPKKSSFV 152
Query: 63 RAARTDKGVSALKQIVSLKL----PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A +VSLKL P+ K INE L QIR+ I TKGF++ C+
Sbjct: 153 RCARTDKGVHAAGNVVSLKLIIEDPDIVQK--INEKLNPQIRVWGIIPATKGFSAYQFCD 210
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y P++ F P
Sbjct: 211 SRMYEYLIPSHCFLPP 226
>gi|326478893|gb|EGE02903.1| tRNA pseudouridine synthase [Trichophyton equinum CBS 127.97]
Length = 582
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 97/157 (61%), Gaps = 2/157 (1%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQ-PFVKDG 195
K+++R+ P++ + A L Y GT NFHN+T ++ DPS R I SF + P V +G
Sbjct: 345 AKNEYRIPPERLARINAALALYVGTKNFHNYTIQKTFRDPSARRLIKSFKISRDPVVING 404
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
E ++LK+ GQSFM+HQIRKMV + + R IE+++ + +P APGLGLLLE
Sbjct: 405 TEWLSLKVHGQSFMMHQIRKMVAMVALLVRCGADIKRIEESYQNSRIPIPKAPGLGLLLE 464
Query: 256 QVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFI 292
+ +D YN+K +D E L F + +KE++EF+ K I
Sbjct: 465 RPIFDGYNKK-AKDLGRELLDFDKYEKEMDEFKLKEI 500
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 72/136 (52%), Gaps = 16/136 (11%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
+M YSG GY G+Q C + KTIEGD+ A A +++ + P+ F
Sbjct: 103 VMLGYSGTGYHGMQ--------LCPTE--KTIEGDLFAAFVAANAISKANAVDPKKSSFV 152
Query: 63 RAARTDKGVSALKQIVSLKL----PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A +VSLKL P+ K INE L QIR+ I TKGF++ C+
Sbjct: 153 RCARTDKGVHAAGNVVSLKLIIEDPDIVQK--INEKLNPQIRVWGIIPATKGFSAYQFCD 210
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y P++ F P
Sbjct: 211 SRMYEYLIPSHCFLPP 226
>gi|317033787|ref|XP_001395447.2| tRNA pseudouridine synthase [Aspergillus niger CBS 513.88]
Length = 517
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 98/165 (59%), Gaps = 2/165 (1%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFD-CEQPFVKDG 195
K +R+ + +Q L +Y GT+NF N+T ++ DPS R+I SF EQP + +G
Sbjct: 280 AKRAYRIPAQRLARVQEALDKYVGTNNFFNYTIQKTHADPSSKRHIKSFKMAEQPIIING 339
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
E ++LK+ GQSFM+HQIRKMV +A + R I +T+G ++ +P APGLGLLLE
Sbjct: 340 TEWLSLKVHGQSFMMHQIRKMVAMAAMVVRCGCDPQRIVETYGANKIAIPKAPGLGLLLE 399
Query: 256 QVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
+ +D YN+K + G + + F + +NEF+ + I + + E
Sbjct: 400 RPVFDSYNRKTHETG-KDPIDFDKHADTINEFKQREIYDRIFREE 443
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 61/115 (53%), Gaps = 12/115 (10%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ YSG GY G+Q ++ KTIEG++ A AG +++ + P+
Sbjct: 50 VAVLLGYSGTGYKGMQ----------LSETEKTIEGELFAAFVAAGAISKANATDPKKSS 99
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK--EAINEHLPEQIRILSIKRVTKGFNS 113
R ARTDKGV A IVSLKL E + + INE L QIR+ I K F+S
Sbjct: 100 LVRCARTDKGVHAAGNIVSLKLIVEDDDIIQKINEKLSSQIRVWDILVTNKSFSS 154
>gi|342877067|gb|EGU78579.1| hypothetical protein FOXB_10899 [Fusarium oxysporum Fo5176]
Length = 847
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 99/165 (60%), Gaps = 1/165 (0%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE-QPFVKDG 195
K +R++ ++ N LQ L +Y GT NFHN+T ++ DPS R+I SF +P + +
Sbjct: 376 AKRRYRVSTERLNRLQEALNKYNGTKNFHNYTVQKSFFDPSAKRHIKSFVVNPKPIIIND 435
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
E ++LK+ GQSFM+HQIRKMVG+A I R T + I +++ + +P APGLGLLLE
Sbjct: 436 TEWLSLKVHGQSFMMHQIRKMVGLASLIVRCGTPMERINESYQNQKMAIPKAPGLGLLLE 495
Query: 256 QVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
+ + YN+K + E++ F + ++++ F+ K I + E
Sbjct: 496 RPVFHNYNRKATESLGKEAIDFDKYEEKIQAFKDKQIYTRIFSVE 540
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 71/136 (52%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M Y+G GY G+Q N KTIE D+ +A A +++ + + P+
Sbjct: 110 VAVMIGYAGTGYKGMQV----------NGNEKTIEADLFKAFVAASAISKANADDPKKSS 159
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A ++SLKL +E + IN LPEQIRI I+R F+ C+
Sbjct: 160 LVRCARTDKGVHAAGNVISLKLIIEDEDIVDKINAELPEQIRIWGIQRTNNAFSCYQTCD 219
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y P+Y P
Sbjct: 220 SRWYEYLMPSYCLLPP 235
>gi|327303396|ref|XP_003236390.1| tRNA pseudouridine synthase [Trichophyton rubrum CBS 118892]
gi|326461732|gb|EGD87185.1| tRNA pseudouridine synthase [Trichophyton rubrum CBS 118892]
Length = 580
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 97/157 (61%), Gaps = 2/157 (1%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQ-PFVKDG 195
K+++R+ P++ + A L Y GT NFHN+T ++ DPS R I SF + P V +G
Sbjct: 343 AKNEYRIPPERLARINAALALYVGTKNFHNYTIQKTFRDPSARRLIKSFKISRDPVVING 402
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
E ++LK+ GQSFM+HQIRKMV + + R IE+++ + +P APGLGLLLE
Sbjct: 403 TEWLSLKVHGQSFMMHQIRKMVAMVALLVRCGADIKRIEESYQNSRIPIPKAPGLGLLLE 462
Query: 256 QVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFI 292
+ +D YN+K +D E L F + +KE++EF+ K I
Sbjct: 463 RPIFDGYNKK-AKDLGRELLDFDKYEKEMDEFKLKEI 498
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 72/136 (52%), Gaps = 16/136 (11%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
+M YSG GY G+Q C + KTIEGD+ A A +++ + P+ F
Sbjct: 103 VMLGYSGTGYHGMQ--------LCPTE--KTIEGDLFAAFVAANAISKANAVDPKKSSFV 152
Query: 63 RAARTDKGVSALKQIVSLKL----PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A +VSLKL P+ K INE L QIR+ I TKGF++ C+
Sbjct: 153 RCARTDKGVHAAGNVVSLKLIIEDPDIVQK--INEKLSPQIRVWGIIPATKGFSAYQFCD 210
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y P++ F P
Sbjct: 211 SRMYEYLIPSHCFLPP 226
>gi|358369797|dbj|GAA86410.1| tRNA pseudouridine synthase [Aspergillus kawachii IFO 4308]
Length = 617
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 98/165 (59%), Gaps = 2/165 (1%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFD-CEQPFVKDG 195
K +R+ + +Q L +Y GT+NF N+T ++ DPS R+I SF EQP + +G
Sbjct: 380 AKRAYRIPAQRLARVQEALDKYVGTNNFFNYTIQKTHADPSSKRHIKSFKMAEQPIIING 439
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
E ++LK+ GQSFM+HQIRKMV +A + R I +T+G ++ +P APGLGLLLE
Sbjct: 440 TEWLSLKVHGQSFMMHQIRKMVAMAAMVVRCGCDPQRIVETYGANKIAIPKAPGLGLLLE 499
Query: 256 QVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
+ +D YN+K + G + + F + +NEF+ + I + + E
Sbjct: 500 RPVFDSYNRKTHETG-KDPIDFDKHADTINEFKQREIYDRIFREE 543
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 72/136 (52%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ YSG GY G+Q ++ KTIEG++ A AG +++ + P+
Sbjct: 129 VAVLLGYSGTGYKGMQL----------SETEKTIEGELFAAFVAAGAISKANATDPKKSS 178
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A IVSLKL +E + INE L QIR+ I K F+S C+
Sbjct: 179 LVRCARTDKGVHAAGNIVSLKLIVEDEDIIQKINEKLSSQIRVWDILVTNKSFSSYQLCD 238
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y PT+ F P
Sbjct: 239 SRIYEYLIPTHCFLPP 254
>gi|159478785|ref|XP_001697481.1| predicted protein [Chlamydomonas reinhardtii]
gi|158274360|gb|EDP00143.1| predicted protein [Chlamydomonas reinhardtii]
Length = 446
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 95/328 (28%), Positives = 147/328 (44%), Gaps = 70/328 (21%)
Query: 33 TIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKL---------- 82
TIE + +ALF AG ++E +F + I++ RA+RTDKGV +L ++ L++
Sbjct: 63 TIEQVLEKALFAAGCISEANFGSFSKIRWSRASRTDKGVHSLGTVMGLRMLVDDAKYVAG 122
Query: 83 PEE-----ANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDT 137
P+ A EA+N HLP QIR+ + K F++++ C R Y Y P D
Sbjct: 123 PDGDCEGLALAEAVNTHLPPQIRVFT---TNKKFSARHMCEGRVYQYYLPVSMIDLKCDG 179
Query: 138 KDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKR-----------KPLDPSCSRY----- 181
++ + + LK YEG+H FHNFT + +P D RY
Sbjct: 180 SEE---DAQRLAKFRDALKCYEGSHPFHNFTKRVTYQPGGSNVQFRPGDGVVGRYGPYGR 236
Query: 182 -----------------------IMSFDCE--QPFVKDGLELITLKIKGQSFMLHQIRKM 216
I SF +P V+ G + L++ GQSFMLH IR M
Sbjct: 237 VLLLRWQTEVDPRDRITQTFYRRIYSFTAADPKPMVEGGEPCLLLEVSGQSFMLHHIRHM 296
Query: 217 VGVAMAIARGFTSKDLIEKTFGLD-QFDLPMAPGLGLLLEQVHYDLYNQKYG------QD 269
+G A+A+ G SK+++ + + LP AP LLL + + + G ++
Sbjct: 297 IGAAVAVTLGLISKEVLLGSLTPPARVTLPRAPPHTLLLSDCSFGRFPAQQGPGDNDLRN 356
Query: 270 GMHESLHFHEVDKEVNE-FRHKFILPYL 296
E L E ++ E FR++ +LP L
Sbjct: 357 ITGERLSLREGGQQRKEAFRNEVLLPAL 384
>gi|350636807|gb|EHA25165.1| hypothetical protein ASPNIDRAFT_186794 [Aspergillus niger ATCC
1015]
Length = 538
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 98/165 (59%), Gaps = 2/165 (1%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFD-CEQPFVKDG 195
K +R+ + +Q L +Y GT+NF N+T ++ DPS R+I SF EQP + +G
Sbjct: 301 AKRAYRIPAQRLARVQEALDKYVGTNNFFNYTIQKTHADPSSKRHIKSFKMAEQPIIING 360
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
E ++LK+ GQSFM+HQIRKMV +A + R I +T+G ++ +P APGLGLLLE
Sbjct: 361 TEWLSLKVHGQSFMMHQIRKMVAMAAMVVRCGCDPQRIVETYGANKIAIPKAPGLGLLLE 420
Query: 256 QVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
+ +D YN+K + G + + F + +NEF+ + I + + E
Sbjct: 421 RPVFDSYNRKTHETG-KDPIDFDKHADTINEFKQREIYDRIFREE 464
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 72/136 (52%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ YSG GY G+Q ++ KTIEG++ A AG +++ + P+
Sbjct: 50 VAVLLGYSGTGYKGMQ----------LSETEKTIEGELFAAFVAAGAISKANATDPKKSS 99
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK--EAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A IVSLKL E + + INE L QIR+ I K F+S C+
Sbjct: 100 LVRCARTDKGVHAAGNIVSLKLIVEDDDIIQKINEKLSSQIRVWDILVTNKSFSSYQLCD 159
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y PT+ F P
Sbjct: 160 SRIYEYLIPTHCFLPP 175
>gi|328350723|emb|CCA37123.1| tRNA pseudouridine synthase A [Komagataella pastoris CBS 7435]
Length = 516
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 97/171 (56%), Gaps = 1/171 (0%)
Query: 133 TPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV 192
T + ++R++ ++ + ++ Y G HNFHNFT + D S +RY+ +PFV
Sbjct: 299 TENQARREYRISKERLELVNKAMQMYIGHHNFHNFTLGKHFKDASANRYMKEITVSEPFV 358
Query: 193 KDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGL 252
+G E +++KI GQSFMLHQIRKM+ +A + R I + F + ++P AP LGL
Sbjct: 359 IEGTEWVSIKIHGQSFMLHQIRKMIAMAALVVRTGCPLGRITEAFQSSRINIPKAPALGL 418
Query: 253 LLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITE 303
LLEQ Y+ YN + G +E L F +KE+NEF+ K I + E+ +
Sbjct: 419 LLEQPVYEGYNTRLKAFGYNE-LTFTPFEKEMNEFKMKHIYDKIYAEEVKD 468
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 75/137 (54%), Gaps = 12/137 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A + Y G GY G+Q N KTIEGD+ EA ++G ++ D+ N +
Sbjct: 92 VACLIGYCGTGYHGMQL----------NPPQKTIEGDLFEAFVESGAISRDNSNDLKKSS 141
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F RAARTDKGV A ++SLK+ +E E IN LP IR+ +R K F+ + C+
Sbjct: 142 FMRAARTDKGVHAAGNVISLKMIIEDEDILEKINSKLPPTIRVWGYERTNKNFDCRKMCS 201
Query: 119 ARTYSYTCPTYAFATPQ 135
+R Y Y PT++F P+
Sbjct: 202 SRIYEYLMPTFSFLPPK 218
>gi|254566437|ref|XP_002490329.1| tRNA:pseudouridine synthase, introduces pseudouridines at positions
26-28, 34-36, 65, and 67 of tRNA [Komagataella pastoris
GS115]
gi|238030125|emb|CAY68048.1| tRNA:pseudouridine synthase, introduces pseudouridines at positions
26-28, 34-36, 65, and 67 of tRNA [Komagataella pastoris
GS115]
Length = 509
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 97/171 (56%), Gaps = 1/171 (0%)
Query: 133 TPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV 192
T + ++R++ ++ + ++ Y G HNFHNFT + D S +RY+ +PFV
Sbjct: 292 TENQARREYRISKERLELVNKAMQMYIGHHNFHNFTLGKHFKDASANRYMKEITVSEPFV 351
Query: 193 KDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGL 252
+G E +++KI GQSFMLHQIRKM+ +A + R I + F + ++P AP LGL
Sbjct: 352 IEGTEWVSIKIHGQSFMLHQIRKMIAMAALVVRTGCPLGRITEAFQSSRINIPKAPALGL 411
Query: 253 LLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITE 303
LLEQ Y+ YN + G +E L F +KE+NEF+ K I + E+ +
Sbjct: 412 LLEQPVYEGYNTRLKAFGYNE-LTFTPFEKEMNEFKMKHIYDKIYAEEVKD 461
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 75/137 (54%), Gaps = 12/137 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A + Y G GY G+Q N KTIEGD+ EA ++G ++ D+ N +
Sbjct: 85 VACLIGYCGTGYHGMQL----------NPPQKTIEGDLFEAFVESGAISRDNSNDLKKSS 134
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F RAARTDKGV A ++SLK+ +E E IN LP IR+ +R K F+ + C+
Sbjct: 135 FMRAARTDKGVHAAGNVISLKMIIEDEDILEKINSKLPPTIRVWGYERTNKNFDCRKMCS 194
Query: 119 ARTYSYTCPTYAFATPQ 135
+R Y Y PT++F P+
Sbjct: 195 SRIYEYLMPTFSFLPPK 211
>gi|354543006|emb|CCE39724.1| hypothetical protein CPAR2_601440 [Candida parapsilosis]
Length = 554
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 96/167 (57%), Gaps = 1/167 (0%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGL 196
T+ +R++ + + ++QY+GTHNFHNFT + D S RYI+ PFV +
Sbjct: 325 TRRAYRISQHRLKRFTSTMQQYKGTHNFHNFTIGKSYKDTSSKRYIIDTTVSSPFVINNT 384
Query: 197 ELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQ 256
E I++K+ GQSFMLHQIRKM+ +A R D+I F + ++P AP LGLLLE
Sbjct: 385 EWISIKLHGQSFMLHQIRKMICMATLAIRCDLPSDMIADCFQPTKINIPKAPALGLLLEN 444
Query: 257 VHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITE 303
+D YN K +D ++++ F + E+ +F+ KFI + E+ E
Sbjct: 445 PVFDAYNFKL-RDHAYDAIDFDKFKNEMLDFKMKFIYDKIYDEEVKE 490
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 84/137 (61%), Gaps = 12/137 (8%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVT-EDSFNTPQNIQ 60
A+M Y G GY GLQ + G+KTIE D+ EA +KAG ++ E+S + ++
Sbjct: 93 AVMLGYCGTGYNGLQIQ--------NEPGVKTIEKDLYEAFYKAGAISLENSLDLKKS-G 143
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEAN--KEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
FQR ARTDKGV A +VSLKL E K+ IN +LP+QIRI I+R TKGF+ + C+
Sbjct: 144 FQRTARTDKGVHAAGNVVSLKLIIEDPQLKDKINSYLPDQIRIWGIQRTTKGFDCRKMCS 203
Query: 119 ARTYSYTCPTYAFATPQ 135
+R Y Y PTY +P+
Sbjct: 204 SRVYEYLLPTYCLISPK 220
>gi|340518448|gb|EGR48689.1| Hypothetical protein TRIREDRAFT_27492 [Trichoderma reesei QM6a]
Length = 507
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 99/165 (60%), Gaps = 1/165 (0%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE-QPFVKDG 195
K +R++P++ LQ L +YEGT+NFHN+T ++ DPS R+I SF +P +
Sbjct: 314 AKRAYRVSPERIQRLQEALNKYEGTNNFHNYTVQKSHGDPSSKRHIRSFVVNPKPIIIGD 373
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
E ++LK+ GQSFM+HQIRKMVG+ + R T+ D I +++G + +P PGLGLLLE
Sbjct: 374 TEWLSLKVHGQSFMMHQIRKMVGLVTLLVRCGTTLDRITESYGPKKMAIPKMPGLGLLLE 433
Query: 256 QVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
+ ++ YN++ + E + F + + ++ F+ + I + E
Sbjct: 434 RPVFENYNKRAKETLGREEIDFDKYNDKIEAFKQEQIYSRIFSVE 478
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 73/136 (53%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M Y+G GY G+Q N +TIE D+ +A KAG +++ + + P+
Sbjct: 61 VAVMIGYAGTGYKGMQL----------NGDEETIERDLFQAFIKAGAISKANADDPRKSS 110
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A ++SLKL +E + INE LP QIR+ I+R FN C+
Sbjct: 111 LARCARTDKGVHAAGNVISLKLIIEDEDIVDKINEALPAQIRVWGIQRTNNSFNCYQYCD 170
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y P+Y P
Sbjct: 171 SRWYEYLMPSYCLLPP 186
>gi|296812761|ref|XP_002846718.1| tRNA pseudouridylate synthase Lsp1 [Arthroderma otae CBS 113480]
gi|238841974|gb|EEQ31636.1| tRNA pseudouridylate synthase Lsp1 [Arthroderma otae CBS 113480]
Length = 576
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 95/157 (60%), Gaps = 2/157 (1%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQ-PFVKDG 195
K+++R+ P++ + L Y GT NFHN+T ++ DPS R I SF + P V +G
Sbjct: 349 AKNEYRIPPERLARINEALSLYVGTRNFHNYTIQKTFRDPSAKRLIKSFKISRDPVVING 408
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
E ++LK+ GQSFM+HQIRKMV + + R IE+++ + +P APGLGLLLE
Sbjct: 409 TEWLSLKVHGQSFMMHQIRKMVAMVALLVRCGADIHRIEESYQRPRIPIPKAPGLGLLLE 468
Query: 256 QVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFI 292
+ +D YN+K D E L F + +KE++EF+ K I
Sbjct: 469 RPIFDGYNRK-ATDLGREPLDFSKYEKEMDEFKLKEI 504
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 73/139 (52%), Gaps = 16/139 (11%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
+M YSG GY G+Q C + KTIEGD+ A A +++ + P+ F
Sbjct: 103 VMLGYSGTGYHGMQ--------LCATE--KTIEGDLFAAFVAANAISKANAMDPKKSSFV 152
Query: 63 RAARTDKGVSALKQIVSLKL----PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A +VSLKL P+ K INE L QIR+ I TKGF++ C+
Sbjct: 153 RCARTDKGVHAAGNVVSLKLIIEDPDIVQK--INEKLNPQIRVWGIIPATKGFSAYQFCD 210
Query: 119 ARTYSYTCPTYAFATPQDT 137
+R Y Y P++ F P +
Sbjct: 211 SRMYEYLIPSHCFLPPHPS 229
>gi|346975818|gb|EGY19270.1| tRNA pseudouridine synthase [Verticillium dahliae VdLs.17]
Length = 626
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 100/164 (60%), Gaps = 1/164 (0%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQ-PFVKDGLELI 199
+++TP++ + LQA L QY GT+NFHN+T ++ DPS R+I SF + P + +
Sbjct: 402 YQVTPERLDQLQAALDQYVGTYNFHNYTIQKSFKDPSAKRHIKSFQVNKTPIQIRDTQWV 461
Query: 200 TLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHY 259
++K+ GQSFM+HQIRKM+ +A + R T I++++G D+ +P APGLGLLLE+ +
Sbjct: 462 SIKVHGQSFMMHQIRKMISMATLVVRCATPLTRIKESYGEDRIAIPKAPGLGLLLERPVF 521
Query: 260 DLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITE 303
+ Y++K E + F + D ++ F+ K I + + E E
Sbjct: 522 EGYSRKAVDSLGREPIDFTKHDDKIQAFKDKEIYQRIFEVEEKE 565
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 91/177 (51%), Gaps = 22/177 (12%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M YSG GY+GLQ N KTIEGD+ +A AG +++ + + P+
Sbjct: 144 VAVMVGYSGTGYYGLQI----------NWDEKTIEGDLFKAFITAGAISKANADDPKKSS 193
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK--EAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A ++SLKL E + + IN HLP+QIR+ ++R + F++ C+
Sbjct: 194 LSRCARTDKGVHAAGNLISLKLIIEDDDIVDKINAHLPDQIRVWGLQRTSNSFSAYQACD 253
Query: 119 ARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+R Y Y PTY PD F + L++ + + +F SK +D
Sbjct: 254 SRWYEYLLPTYCLLPSH---------PDSF-LWKKLVESAQEKGYYDDFQSKLADMD 300
>gi|325088485|gb|EGC41795.1| tRNA pseudouridine synthase [Ajellomyces capsulatus H88]
Length = 612
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 97/166 (58%), Gaps = 1/166 (0%)
Query: 136 DTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFD-CEQPFVKD 194
D K +R+ ++ + + L Y GT NFHN+T ++ D S R+I SF +P + +
Sbjct: 379 DAKKAYRIPRERMDRINDALGMYVGTRNFHNYTIQKSFRDASAKRHIKSFKISREPLIIN 438
Query: 195 GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLL 254
G E ++LK+ GQSFM+HQIRKMV +A I R L+ +T+G + +P APGLGLLL
Sbjct: 439 GTEWLSLKVHGQSFMMHQIRKMVAMAALIVRCGCDIKLVPETYGDQKIAIPKAPGLGLLL 498
Query: 255 EQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
E+ +D YN++ + + F + +KE+ EF+ + I + + E
Sbjct: 499 ERPIFDSYNKRTVVEYGKNPIDFSKYEKEIEEFKQREIYERIFREE 544
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 75/136 (55%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M YSG GY G+Q ++ KTIEGD+ A AG +++ + P+
Sbjct: 123 VAVMLGYSGSGYKGMQ----------LSETEKTIEGDLFTAFVAAGAISKANATDPKKSS 172
Query: 61 FQRAARTDKGVSALKQIVSLKL-PEEAN-KEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A +VSLKL E+ N + IN HL QIR+ I+ K F+S + C+
Sbjct: 173 LVRCARTDKGVHAAGNVVSLKLIVEDPNVVQKINGHLSPQIRVWGIEITNKSFSSYHLCD 232
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y P++ F P
Sbjct: 233 SRIYEYLIPSHCFLPP 248
>gi|240282351|gb|EER45854.1| tRNA pseudouridine synthase [Ajellomyces capsulatus H143]
Length = 612
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 97/166 (58%), Gaps = 1/166 (0%)
Query: 136 DTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFD-CEQPFVKD 194
D K +R+ ++ + + L Y GT NFHN+T ++ D S R+I SF +P + +
Sbjct: 379 DAKKAYRIPRERMDRINDALGMYVGTRNFHNYTIQKSFRDASAKRHIKSFKISREPLIIN 438
Query: 195 GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLL 254
G E ++LK+ GQSFM+HQIRKMV +A I R L+ +T+G + +P APGLGLLL
Sbjct: 439 GTEWLSLKVHGQSFMMHQIRKMVAMAALIVRCGCDIKLVPETYGDQKIAIPKAPGLGLLL 498
Query: 255 EQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
E+ +D YN++ + + F + +KE+ EF+ + I + + E
Sbjct: 499 ERPIFDSYNKRTVVEYGKNPIDFSKYEKEIEEFKQREIYERIFREE 544
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 75/136 (55%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M YSG GY G+Q ++ KTIEGD+ A AG +++ + P+
Sbjct: 123 VAVMLGYSGSGYKGMQ----------LSETEKTIEGDLFTAFVAAGAISKANATDPKKSS 172
Query: 61 FQRAARTDKGVSALKQIVSLKL-PEEAN-KEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A +VSLKL E+ N + IN HL QIR+ I+ K F+S + C+
Sbjct: 173 LVRCARTDKGVHAAGNVVSLKLIVEDPNVVQKINGHLSPQIRVWGIEITNKSFSSYHLCD 232
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y P++ F P
Sbjct: 233 SRIYEYLIPSHCFLPP 248
>gi|67539990|ref|XP_663769.1| hypothetical protein AN6165.2 [Aspergillus nidulans FGSC A4]
gi|40738761|gb|EAA57951.1| hypothetical protein AN6165.2 [Aspergillus nidulans FGSC A4]
gi|259479643|tpe|CBF70055.1| TPA: tRNA pseudouridine synthase, putative (AFU_orthologue;
AFUA_2G08460) [Aspergillus nidulans FGSC A4]
Length = 574
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 99/165 (60%), Gaps = 2/165 (1%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE-QPFVKDG 195
+ ++R+ + +Q L +Y GT NF+N+T +++ DPS R+I SF +P + DG
Sbjct: 333 ARREYRIPATRLARIQQALDKYVGTKNFYNYTIQKQYRDPSAKRHIKSFKLNPEPIIIDG 392
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
E ++LK+ GQSFM+HQIRKMV +A + R I ++G + +P APGLGLLLE
Sbjct: 393 TEWLSLKVHGQSFMMHQIRKMVAMATMVVRCGCDPARINDSYGEFKMAIPKAPGLGLLLE 452
Query: 256 QVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
+ +D YN+K D E + F + ++E++EF+ + I + + E
Sbjct: 453 RPVFDGYNKK-AADLKKEPIDFGKYEEEISEFKQREIYDRIFREE 496
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 72/138 (52%), Gaps = 16/138 (11%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ YSG GY G+Q + KTIEG++ A AG +++ + P+
Sbjct: 81 VAVLIGYSGTGYKGMQL----------STTEKTIEGELFTAFVAAGAISKANAADPKKSS 130
Query: 61 FQRAARTDKGVSALKQIVSLKL----PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
R ARTDKGV A IVSLKL P+ K IN+HL QIR+ I K F+S
Sbjct: 131 LVRCARTDKGVHAAGNIVSLKLIVEDPDIVQK--INDHLSPQIRVWGILVANKSFSSYQM 188
Query: 117 CNARTYSYTCPTYAFATP 134
C++R Y Y P++ F P
Sbjct: 189 CDSRIYEYLIPSHCFLPP 206
>gi|302893420|ref|XP_003045591.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256726517|gb|EEU39878.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 616
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 121/224 (54%), Gaps = 12/224 (5%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE-QPFVKDG 195
K +R++ + LQ L +Y GT NFHN+T ++ D S R+I SF +P + +
Sbjct: 389 AKRRYRISTGRLERLQEALNKYNGTRNFHNYTVQKSYFDASAKRHIKSFVVNPKPIIINN 448
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
E ++LK+ GQSFM+HQIRKMVG+A I R T +++++ + +P APGLGLLLE
Sbjct: 449 TEWLSLKVHGQSFMMHQIRKMVGLASLIVRCGTPLKRMDESYQNQKMAIPKAPGLGLLLE 508
Query: 256 QVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELL-- 313
+ + YN+K + E++ F ++++ EF+ K I + E E + +
Sbjct: 509 RPVFHNYNRKATESLGREAIDFGNYEEKIQEFKDKQIYTRIFSVEEKENSFHMFFNQIDQ 568
Query: 314 --ADHSFETRAA--KAALAAAN--GEELQEVTD---GEEEEDEE 348
+H A KAA A N GE++Q+ D G+E+ED E
Sbjct: 569 FKTNHFLWLTAGGMKAAEIARNTTGEKVQQDVDKQLGDEDEDPE 612
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 72/136 (52%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M Y+G GY G+Q N KTIE D+ +A AG +++ + + P+
Sbjct: 116 VAVMIGYAGTGYKGMQV----------NGNEKTIEADLFKAFVAAGAISKANADDPKKSS 165
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A ++SLKL +E + IN LPEQIRI I+R F+ C+
Sbjct: 166 LVRCARTDKGVHAAGNVISLKLIIEDEDIIDKINAELPEQIRIWGIQRTNNAFSCYQTCD 225
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y P+Y P
Sbjct: 226 SRWYEYLMPSYCLLPP 241
>gi|406868239|gb|EKD21276.1| tRNA pseudouridine synthase A [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 688
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 118/219 (53%), Gaps = 6/219 (2%)
Query: 138 KDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDC-EQPFVKDGL 196
K +R++ + +Q L Y GT NFHN+T ++ DPS R I SF +P + +
Sbjct: 469 KKAYRISATRRARVQEALNSYLGTCNFHNYTIQKTFSDPSAKRVIRSFKVGPEPIIINDT 528
Query: 197 ELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQ 256
E ++LK+ GQSFM+HQIRKMV + + R + +I++++G +P APGLGLLLE+
Sbjct: 529 EWLSLKVHGQSFMMHQIRKMVAMVALVVRCGSPLSIIQESYGPQNISIPKAPGLGLLLER 588
Query: 257 VHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADH 316
+D YN+K ++ E ++F KE+ EF+ + I + + E + A+ + DH
Sbjct: 589 PVFDSYNEKAVREFNREKINFDNYQKEMEEFKQREIYDRIFREEEKDHQFHAFFHHV-DH 647
Query: 317 ---SFETRAAKAALAAANGEELQEVTDGEEEEDEEDRGG 352
F + +AAA ++ TD + +DE D G
Sbjct: 648 FKTDFFLWVTASGIAAAKQSKVPARTD-DHSDDEPDAKG 685
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 75/136 (55%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M Y+G GY G+Q N KTIEGD+ +A AG +++ + + P+
Sbjct: 149 VAVMIGYAGSGYKGMQI----------NGAEKTIEGDLFKAFVAAGAISKANADDPKKSS 198
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK--EAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A ++SLKL E + INE+LP QIR+ I+R F+ C+
Sbjct: 199 LVRCARTDKGVHAAGNVISLKLIVEEPDIIQKINENLPPQIRVWGIERTNGAFSCYQTCD 258
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y PTY+F P
Sbjct: 259 SRWYEYLIPTYSFIPP 274
>gi|297842357|ref|XP_002889060.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297334901|gb|EFH65319.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 458
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 98/179 (54%), Gaps = 3/179 (1%)
Query: 136 DTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDG 195
+TK F + +L Y G++NFHNFT++ K DP+ +R I+SF DG
Sbjct: 261 ETKSKFCYGEKEKERFNRILSCYVGSYNFHNFTTRTKADDPAANRQIISFTANTVINLDG 320
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMAPGLGLLL 254
++ I ++ G+SFMLHQIRKM+G+A+AI R S+ LI+ F D +PMAP +GL L
Sbjct: 321 IDFIKCEVLGKSFMLHQIRKMMGLAVAIMRNCASESLIQTAFSKDVNITVPMAPEVGLYL 380
Query: 255 EQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELL 313
++ + YN+K+ + HE + +E F+ K I ++ TE M WL L
Sbjct: 381 DECFFTSYNKKF--EDSHEEVSMEAYKEEAEAFKLKHIYSHICATERKYGNMALWLHSL 437
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 77/133 (57%), Gaps = 12/133 (9%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++FA+ GVGY G+Q +N G KTIEG++ EALF AG V E P+
Sbjct: 24 VAIIFAFCGVGYQGMQ----------KNPGAKTIEGELEEALFHAGAVPESIRGKPKLYD 73
Query: 61 FQRAARTDKGVSALKQIVS--LKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F R+ARTDKGVSA+ Q+VS + + +N +LP QIRI K VT F+SK C+
Sbjct: 74 FARSARTDKGVSAVGQVVSGRFNVDPPGFVDRLNSNLPNQIRIFGYKHVTPSFSSKKFCD 133
Query: 119 ARTYSYTCPTYAF 131
R Y Y P +A
Sbjct: 134 RRRYVYLLPVFAL 146
>gi|154274161|ref|XP_001537932.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150415540|gb|EDN10893.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 634
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 96/166 (57%), Gaps = 1/166 (0%)
Query: 136 DTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFD-CEQPFVKD 194
D K +R+ ++ + + L Y GT NFHN+T ++ D S R+I SF +P + +
Sbjct: 321 DAKKAYRIPRERLDRINDALGMYVGTRNFHNYTIQKSFRDASAKRHIKSFKISREPLIIN 380
Query: 195 GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLL 254
G E ++LK+ GQSFM+HQIRKMV + I R L+ +T+G + +P APGLGLLL
Sbjct: 381 GTEWLSLKVHGQSFMMHQIRKMVAMTALIVRCGCDIQLVPETYGDQKIAIPKAPGLGLLL 440
Query: 255 EQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
E+ +D YN++ + + F + +KE+ EF+ + I + + E
Sbjct: 441 ERPIFDSYNKRTVVEYGKNPIDFSKYEKEIEEFKQREIYERIFREE 486
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 56/102 (54%), Gaps = 12/102 (11%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M YSG GY G+Q ++ KTIEGD+ A AG +++ + P+
Sbjct: 123 VAVMLGYSGSGYKGMQ----------LSETEKTIEGDLFTAFVAAGAISKANATDPKKSS 172
Query: 61 FQRAARTDKGVSALKQIVSLKL-PEEAN-KEAINEHLPEQIR 100
R ARTDKGV A +VSLKL E+ N + IN HL QIR
Sbjct: 173 LVRCARTDKGVHAAGNVVSLKLIVEDPNVVQKINGHLSPQIR 214
>gi|190349084|gb|EDK41674.2| hypothetical protein PGUG_05772 [Meyerozyma guilliermondii ATCC
6260]
Length = 477
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 95/168 (56%), Gaps = 11/168 (6%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELIT 200
+ ++ ++ N + +K YEG+HNFHNFT + D S RY+ PF+ +G E ++
Sbjct: 255 YNVSNERLNLFREAMKLYEGSHNFHNFTIGKPFKDASSRRYMKETTVSNPFIIEGTEWVS 314
Query: 201 LKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYD 260
+KI GQSFMLHQIRKM+ +A+ + R I+ FG + ++P AP LGLLLE Y+
Sbjct: 315 IKIHGQSFMLHQIRKMIAMAVLVVRTGCPITRIKDCFGPTKINIPKAPALGLLLENPVYE 374
Query: 261 LYNQKYGQDGMHESLHFHEVD-----KEVNEFRHKFILPYLVKTEITE 303
YN GM E ++ +D +E++ F+ K+I + E+ E
Sbjct: 375 GYN------GMLEKFGYNRIDFEKYKQEMDAFKMKYIYDKIYAEEVKE 416
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 78/137 (56%), Gaps = 10/137 (7%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A M Y G GY G+Q + N +KTIEGD+ +A KAG ++ ++ + +
Sbjct: 31 VACMIGYCGTGYNGMQIQ--------NNPDVKTIEGDLFDAFVKAGAISPENADDLKKNA 82
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK--EAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F RAARTDKGV A ++S KL E + IN HLP+QIR+ I+R K F+ + C+
Sbjct: 83 FMRAARTDKGVHAAGNVISCKLIIEDQDILQRINSHLPDQIRVWGIERTNKSFDCRKMCS 142
Query: 119 ARTYSYTCPTYAFATPQ 135
+R Y Y PTY+ P+
Sbjct: 143 SRVYEYLLPTYSLLPPK 159
>gi|146412075|ref|XP_001482009.1| hypothetical protein PGUG_05772 [Meyerozyma guilliermondii ATCC
6260]
Length = 477
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 95/168 (56%), Gaps = 11/168 (6%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELIT 200
+ ++ ++ N + +K YEG+HNFHNFT + D S RY+ PF+ +G E ++
Sbjct: 255 YNVSNERLNLFREAMKLYEGSHNFHNFTIGKPFKDASSRRYMKETTVSNPFIIEGTEWVS 314
Query: 201 LKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYD 260
+KI GQSFMLHQIRKM+ +A+ + R I+ FG + ++P AP LGLLLE Y+
Sbjct: 315 IKIHGQSFMLHQIRKMIAMAVLVVRTGCPITRIKDCFGPTKINIPKAPALGLLLENPVYE 374
Query: 261 LYNQKYGQDGMHESLHFHEVD-----KEVNEFRHKFILPYLVKTEITE 303
YN GM E ++ +D +E++ F+ K+I + E+ E
Sbjct: 375 GYN------GMLEKFGYNRIDFEKYKQEMDAFKMKYIYDKIYAEEVKE 416
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 78/137 (56%), Gaps = 10/137 (7%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A M Y G GY G+Q + N +KTIEGD+ +A KAG ++ ++ + +
Sbjct: 31 VACMIGYCGTGYNGMQIQ--------NNPDVKTIEGDLFDAFVKAGAISPENADDLKKNA 82
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK--EAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F RAARTDKGV A ++S KL E + IN HLP+QIR+ I+R K F+ + C+
Sbjct: 83 FMRAARTDKGVHAAGNVISCKLIIEDQDILQRINSHLPDQIRVWGIERTNKSFDCRKMCS 142
Query: 119 ARTYSYTCPTYAFATPQ 135
+R Y Y PTY+ P+
Sbjct: 143 SRVYEYLLPTYSLLPPK 159
>gi|258574223|ref|XP_002541293.1| hypothetical protein UREG_00807 [Uncinocarpus reesii 1704]
gi|237901559|gb|EEP75960.1| hypothetical protein UREG_00807 [Uncinocarpus reesii 1704]
Length = 578
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 100/165 (60%), Gaps = 1/165 (0%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQ-PFVKDG 195
K +R+ P + +Q +L Y GT NFHN+T ++ DPS R I SF + P + G
Sbjct: 345 AKRAYRIPPARLARVQEVLDLYVGTRNFHNYTIQKTFRDPSAKRVIKSFKISKDPIIIGG 404
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
E ++LK+ GQSFM+HQIRKMV +A I R + LI +++G + +P APGLGLLLE
Sbjct: 405 TEWLSLKVHGQSFMMHQIRKMVAMAALIVRCGSDPQLIAQSYGPPKIPIPKAPGLGLLLE 464
Query: 256 QVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
+ +D YN+K +D + F + +KE++EF+++ I + + E
Sbjct: 465 RPIFDTYNKKATKDLGKNPIDFSKYEKEIDEFKNREIYERIFREE 509
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 74/138 (53%), Gaps = 16/138 (11%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ YSG GY G+Q + +TIEG+I AL AG +++ + P+
Sbjct: 110 VAVLLGYSGTGYHGMQ----------MSTKERTIEGEIFPALVAAGAISKANAMDPKKSS 159
Query: 61 FQRAARTDKGVSALKQIVSLKL----PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
F R ARTDKGV A ++SLKL P+ K +N+ L QIRI I+ KGF+
Sbjct: 160 FVRCARTDKGVHAAGNVISLKLIIEDPDLVKK--VNDILSPQIRIWGIEPTNKGFSCYQF 217
Query: 117 CNARTYSYTCPTYAFATP 134
C++R Y Y PT+ F P
Sbjct: 218 CDSRIYEYLIPTHCFIPP 235
>gi|325190643|emb|CCA25138.1| ubiquitin fusion degradation protein putative [Albugo laibachii
Nc14]
Length = 585
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 110/394 (27%), Positives = 162/394 (41%), Gaps = 93/394 (23%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ Y+G Y G+Q N + TIE +I +A++ G + +F I
Sbjct: 80 VAIVAGYNGSDYHGVQL----------NPNVPTIEDEIRKAMYHIGALRASNFQDLNKID 129
Query: 61 FQRAARTDKGVSALKQIVSLKL--------PEEAN----KEAINEHLPEQIRILSIKRVT 108
+ R++RTDKGV A + + KL P A+NE+LP IRI S+ RV
Sbjct: 130 WSRSSRTDKGVHASTIVFAGKLLLNEDVIDPVTGRVRGLTRALNENLPPNIRIFSVTRVC 189
Query: 109 KGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFN-----FLQALLKQYEGTHN 163
FN++ C R Y Y P AF + ++ + Q N FL A L+QYEG H+
Sbjct: 190 NSFNARTECALREYEYFLP-LAFLSASCITENRQKMRGQMNVMVQGFLSA-LEQYEGIHD 247
Query: 164 FHNFTSKR--------------------------------------KPLD------PSCS 179
FHN+T R P D P
Sbjct: 248 FHNYTRSRSHFYKLHEKKNQKFLERKSAAAHGDTLSDSLGGNSDLTSPFDTASKFRPRLP 307
Query: 180 RYIMS-FDCEQPFVKD--GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKT 236
R+ + + C ++D G + + I GQ+F+LHQIR M+G A++ A S + E +
Sbjct: 308 RHRRAVYQCRGSLIEDFYGEPYVKVHITGQAFLLHQIRCMIGGAISFATDAISSTVFEAS 367
Query: 237 FGLDQF-DLPMAPGLGLLLE------QVHYDLYNQKYGQDGMHESLHFHEV---DKE--- 283
DQ +P+AP GLLL + H + + D +S H V D+E
Sbjct: 368 LYTDQIVRIPIAPAEGLLLRSNSFGGKRHRVSLVRDWNTDFSTDSPSVHRVLLSDREAAL 427
Query: 284 VNEFRHKFILPYLVKTEITEK----PMLAWLELL 313
FRH+ I + K P AW E L
Sbjct: 428 AETFRHEVIYREIAAAWKNLKGSAAPWEAWSEYL 461
>gi|366986575|ref|XP_003673054.1| hypothetical protein NCAS_0A01030 [Naumovozyma castellii CBS 4309]
gi|342298917|emb|CCC66663.1| hypothetical protein NCAS_0A01030 [Naumovozyma castellii CBS 4309]
Length = 543
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 97/165 (58%), Gaps = 3/165 (1%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV--KDGLEL 198
+R++ ++ ++ ++QY G HNFHNFT + DPS R+I + PFV E
Sbjct: 293 YRISNEKLTKFRSTMEQYLGAHNFHNFTLGKDFKDPSAIRFIKAIKVSDPFVIGDAKTEW 352
Query: 199 ITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVH 258
+++KI GQSFMLHQIRKMV +A + R + + I + +G+ + ++P AP LGLLLE
Sbjct: 353 VSIKIHGQSFMLHQIRKMVSMATLVTRCGSPTERITQAYGVQKINIPKAPALGLLLEAPV 412
Query: 259 YDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITE 303
Y+ YN K + G ++++ F E++ F+ K I + K E+ E
Sbjct: 413 YEGYNAKLQEFG-YKAIDFSNYQTEMDAFKMKHIYDKIYKEEVDE 456
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 76/137 (55%), Gaps = 12/137 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ +M Y G GY G+Q N TIE + +A +AG +++D+ N +
Sbjct: 83 VVVMVGYCGTGYCGMQY----------NPPNPTIEAALFKAFVEAGAISKDNSNDLKKSG 132
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEAN--KEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F RAARTDKGV A +VSLK+ E KE INE LPE IR+ I+RV K F+ + C+
Sbjct: 133 FMRAARTDKGVHAGGNLVSLKMIIEDPQIKEKINEKLPEGIRVWDIERVNKAFDCRKLCS 192
Query: 119 ARTYSYTCPTYAFATPQ 135
+R Y Y PTY+ P+
Sbjct: 193 SRWYEYLLPTYSLIGPK 209
>gi|340505792|gb|EGR32098.1| tRNA pseudouridine synthase a, putative [Ichthyophthirius
multifiliis]
Length = 318
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 92/331 (27%), Positives = 151/331 (45%), Gaps = 78/331 (23%)
Query: 61 FQRAARTDKGVSALKQIVSLKLP-------------------------------EEANK- 88
+ R ARTDKGV AL +++KL E N+
Sbjct: 9 WSRGARTDKGVHALINGINVKLAVTKEFLRDPDIEKEHVLENAINTKQQQKNAIERKNQI 68
Query: 89 ------EAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFR 142
+ +N +LP+ IRI+S+K+VTK F+ + C+ R Y Y P + +D K++ +
Sbjct: 69 NYDKIIQTLNSNLPQDIRIISLKQVTKKFDIRTACSHRIYEYILPLFMLQKFEDIKENKK 128
Query: 143 LTPDQFNFLQA----------LLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV 192
+ FLQ +LK++ GT ++HN+T + K D C RYI++ Q F
Sbjct: 129 V------FLQIEQQIQEKINQILKKFIGTKSYHNYTKQLKAGDSKCKRYIINMKG-QIFE 181
Query: 193 KDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGL 252
K+ + + GQSF+ HQIRKM+G+ + + D I+K+F + + +AP GL
Sbjct: 182 KNQEKFVRFTFFGQSFIYHQIRKMIGMICMVFQKQLELDFIDKSFEKEFTKVWLAPAHGL 241
Query: 253 LLEQVHYDLYNQKYGQDGMHESLHFHEVD-KEVNEFRHKFILPYLV-KTEITEKPMLAWL 310
L Q+ +D YN++ + E + + E + K + E R+ I+ Y+V I + W
Sbjct: 242 FLNQMVFDQYNKR---QEIPELIVWDENEIKRIEEMRN--IIEYVVMNVNIVQNLYFQW- 295
Query: 311 ELLADHSFETRAAKAALAAANGEELQEVTDG 341
A G E+QE+ +G
Sbjct: 296 ---------------AKNVNEGIEIQEIDEG 311
>gi|346324816|gb|EGX94413.1| tRNA pseudouridine synthase [Cordyceps militaris CM01]
Length = 585
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 120/225 (53%), Gaps = 8/225 (3%)
Query: 136 DTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE-QPFVKD 194
+ K ++R+TP + LQA L +Y GT NFHN+T ++ DPS R I SF P + +
Sbjct: 358 NAKRNYRITPARRERLQAALNKYTGTRNFHNYTVQKAYGDPSAKRTIKSFRVNPTPVLIN 417
Query: 195 GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLL 254
E ++LK+ GQSFM+HQIRKMVG+ + R T + +++++ ++ +P APGLGLLL
Sbjct: 418 NTEWLSLKVHGQSFMMHQIRKMVGLVSLMVRCGTPLERMDESYCNNKMAIPKAPGLGLLL 477
Query: 255 EQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELL- 313
E + YN++ + + F + ++++ F+ K I + E E A+ +
Sbjct: 478 EHPVFTNYNRRATDNLGRPEIDFDKYEEKMGAFKDKEIYQRIFDVEEKENSFHAFFNQID 537
Query: 314 ---ADHSFETRAAK---AALAAANGEELQEVTDGEEEEDEEDRGG 352
A+H A A +A +G + + V +EDEED G
Sbjct: 538 QFKANHFLWLTAGGLKVAEIANRDGGKGETVDKQLGDEDEEDPDG 582
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 72/136 (52%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M YSG GY G+Q N TIE D+ A KAG +++ + + P+
Sbjct: 99 VAVMIGYSGTGYKGMQV----------NGDEPTIERDLFRAFIKAGAISKANADDPRKSS 148
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK--EAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A ++SLKL E + + INE LPEQIRI I+R FN C+
Sbjct: 149 LARCARTDKGVHAAGNVISLKLIIEEDDIVDKINEALPEQIRIWGIQRTNNSFNCYQYCD 208
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y P+Y P
Sbjct: 209 SRFYEYLLPSYCLLPP 224
>gi|225559412|gb|EEH07695.1| tRNA pseudouridine synthase [Ajellomyces capsulatus G186AR]
Length = 612
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 96/165 (58%), Gaps = 1/165 (0%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFD-CEQPFVKDG 195
K +R+ ++ + + L Y GT NFHN+T ++ D S R+I SF +P + +G
Sbjct: 380 AKKAYRIPRERMDRINDALGMYVGTRNFHNYTIQKSFRDASAKRHIKSFKISREPLIING 439
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
E ++LK+ GQSFM+HQIRKMV +A I R L+ +T+G + +P APGLGLLLE
Sbjct: 440 TEWLSLKVHGQSFMMHQIRKMVAMAALIVRCGCDIKLVPETYGDQKIAIPKAPGLGLLLE 499
Query: 256 QVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
+ +D YN++ + + F + +KE+ EF+ + I + + E
Sbjct: 500 RPIFDSYNKRTVVEYGKNPIDFSKHEKEIEEFKQREIYERIFREE 544
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 75/136 (55%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M YSG GY G+Q ++ KTIEGD+ A AG +++ + P+
Sbjct: 123 VAVMLGYSGSGYKGMQ----------LSETEKTIEGDLFTAFVAAGAISKANATDPKKSS 172
Query: 61 FQRAARTDKGVSALKQIVSLKL-PEEAN-KEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A +VSLKL E+ N + IN HL QIR+ I+ K F+S + C+
Sbjct: 173 LVRCARTDKGVHAAGNVVSLKLIVEDPNVVQKINGHLSPQIRVWGIEITNKSFSSYHLCD 232
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y P++ F P
Sbjct: 233 SRIYEYLIPSHCFLPP 248
>gi|50287019|ref|XP_445939.1| hypothetical protein [Candida glabrata CBS 138]
gi|74637780|sp|Q6FV05.1|PUS1_CANGA RecName: Full=tRNA pseudouridine synthase 1; AltName: Full=tRNA
pseudouridylate synthase 1; AltName: Full=tRNA-uridine
isomerase 1
gi|49525245|emb|CAG58858.1| unnamed protein product [Candida glabrata]
Length = 549
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 98/165 (59%), Gaps = 3/165 (1%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV--KDGLEL 198
+R++ + N +A + QY G HNFHNFT ++ DPS R++ PFV E
Sbjct: 299 YRISEMKLNKFRAAMNQYLGAHNFHNFTLGKEFKDPSAIRFMKEIKVSDPFVIGDAKAEW 358
Query: 199 ITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVH 258
+++KI GQSFMLHQIRKM+ +A IAR T + I + FG + ++P AP LGLLLE
Sbjct: 359 VSIKIHGQSFMLHQIRKMISMATLIARCGTPVERISQAFGPQKINIPKAPALGLLLEAPV 418
Query: 259 YDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITE 303
++ YN++ + G ++ + F + ++V+ F+ K I + E+++
Sbjct: 419 FESYNKRLEKFG-YKPIDFSKYQEKVDAFKMKHIYDKIYAEEVSD 462
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 76/139 (54%), Gaps = 16/139 (11%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M Y G GY G+Q N TIE + +A AG +++ + N +
Sbjct: 89 VAVMIGYCGTGYHGMQ----------YNPPNPTIEAALFKAFVDAGAISKANSNDLKKNN 138
Query: 61 FQRAARTDKGVSALKQIVSLKL----PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
F RAARTDKGV A ++SLK+ PE +K IN +LPE IRI I+RV K F+ +
Sbjct: 139 FMRAARTDKGVHAGGNLISLKMIIEDPEIMDK--INANLPEGIRIWDIERVNKAFDCRKM 196
Query: 117 CNARTYSYTCPTYAFATPQ 135
C++R Y Y PTY+ P+
Sbjct: 197 CSSRWYEYLLPTYSLIGPK 215
>gi|156048366|ref|XP_001590150.1| hypothetical protein SS1G_08914 [Sclerotinia sclerotiorum 1980]
gi|154693311|gb|EDN93049.1| hypothetical protein SS1G_08914 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 599
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 96/163 (58%), Gaps = 1/163 (0%)
Query: 142 RLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDC-EQPFVKDGLELIT 200
R+ + +Q L QY GT+N+HN+T + DPS R+I SF +P + E ++
Sbjct: 384 RIHESRRQRVQEALNQYVGTYNYHNYTILKNYSDPSSRRHIKSFKIGPKPIIIHDTEWLS 443
Query: 201 LKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYD 260
LK+ GQSFM+HQIRKMV +A + R + +LI++T+ + +P AP LGLLLE +
Sbjct: 444 LKVHGQSFMMHQIRKMVAMAALVVRCASPMELIKETYTAAKISIPKAPSLGLLLEAPVFH 503
Query: 261 LYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITE 303
YN+K +D E L F + ++++EF+ + I + + E TE
Sbjct: 504 NYNEKVAKDFDREKLDFEKYREKMDEFKQREIYDRIFRVENTE 546
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 78/136 (57%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M Y+G GY GLQ N KTIEGD+ +A AG +++ + N P+
Sbjct: 58 VAVMIGYAGTGYKGLQI----------NTKEKTIEGDMFKAFVAAGAISKANANDPKKSA 107
Query: 61 FQRAARTDKGVSALKQIVSLKL-PEEANK-EAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A ++SLKL E+ N E IN HLP+QIR+ I+R T FN C+
Sbjct: 108 LVRCARTDKGVHAAGNVLSLKLITEDPNVVENINSHLPDQIRVWGIERTTGSFNCYQMCD 167
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y PTY+F P
Sbjct: 168 SRWYEYLIPTYSFIPP 183
>gi|365987776|ref|XP_003670719.1| hypothetical protein NDAI_0F01570 [Naumovozyma dairenensis CBS 421]
gi|343769490|emb|CCD25476.1| hypothetical protein NDAI_0F01570 [Naumovozyma dairenensis CBS 421]
Length = 548
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 109/199 (54%), Gaps = 3/199 (1%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV--KDGLEL 198
+R++ ++ ++ ++QY G HNFHNFT ++ DPS R++ PFV E
Sbjct: 292 YRISQEKLTKFRSSMEQYLGAHNFHNFTLGKEFKDPSAIRFMKEIKVSDPFVIGDAKTEW 351
Query: 199 ITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVH 258
+++KI GQSFMLHQIRKM+ +A + R + D I + +G+ + ++P AP LGLLLE
Sbjct: 352 VSIKIHGQSFMLHQIRKMISMATLVTRCGSPVDRINQAYGVQKLNIPKAPALGLLLEAPV 411
Query: 259 YDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF 318
++ YN + + G ++++ F + E++ F+ K I + K E+ E A+ + +
Sbjct: 412 FEGYNTRLEKFG-YKAIDFSKYQDEIDAFKMKHIYDKIYKEEVDENVFNAFFSYIDSFNK 470
Query: 319 ETRAAKAALAAANGEELQE 337
T A A G +Q+
Sbjct: 471 VTGAQGEETADKTGAAVQK 489
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 76/139 (54%), Gaps = 16/139 (11%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M Y G GY G+Q N TIE + +A AG +++ + N +
Sbjct: 82 VAVMIGYCGTGYHGMQY----------NPPNPTIEATLFKAFVDAGAISKANSNDLKKNG 131
Query: 61 FQRAARTDKGVSALKQIVSLKL----PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
F R+ARTDKGV A ++SLK+ PE +K INE LPE +R+ I+RV K F+ +
Sbjct: 132 FMRSARTDKGVHAGGNLISLKMIIEDPEIKSK--INEQLPEGVRVWDIERVNKAFDCRKM 189
Query: 117 CNARTYSYTCPTYAFATPQ 135
C++R Y Y PTY+ P+
Sbjct: 190 CSSRWYEYLLPTYSLIGPK 208
>gi|46124417|ref|XP_386762.1| hypothetical protein FG06586.1 [Gibberella zeae PH-1]
Length = 602
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 95/165 (57%), Gaps = 1/165 (0%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE-QPFVKDG 195
K +R++ ++ LQ L Y GT NFHN+T ++ D S R+I SF +P + +
Sbjct: 374 AKRRYRVSTERLERLQEALNMYNGTRNFHNYTVQKSFFDASAKRHIKSFIVNPKPIIIND 433
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
E ++LK+ GQSFM+HQIRKMVG+A I R T + I++++ + +P APGLGLLLE
Sbjct: 434 TEWLSLKVHGQSFMMHQIRKMVGLASLIVRCGTPMERIKESYQNQKMAIPKAPGLGLLLE 493
Query: 256 QVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
+ + YN+K + E + F + D ++ F+ K I + E
Sbjct: 494 RPVFHNYNRKATESLGKEGIDFDKYDDKIQAFKDKQIYTRIFSVE 538
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 72/136 (52%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M Y+G GY G+Q N KTIE D+ +A AG +++ + + P+
Sbjct: 109 VAVMIGYAGTGYKGMQV----------NGNEKTIEADLFKAFVAAGAISKANADDPKKSS 158
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A ++SLKL +E + IN LPEQIRI ++R F+ C+
Sbjct: 159 LVRCARTDKGVHAAGNVISLKLIIEDEDIVDKINAELPEQIRIWGLQRTNNAFSCYQTCD 218
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y P+Y P
Sbjct: 219 SRWYEYLMPSYCLLPP 234
>gi|408399081|gb|EKJ78206.1| hypothetical protein FPSE_01667 [Fusarium pseudograminearum CS3096]
Length = 602
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 95/164 (57%), Gaps = 1/164 (0%)
Query: 138 KDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE-QPFVKDGL 196
K +R++ ++ LQ L Y GT NFHN+T ++ D S R+I SF +P + +
Sbjct: 375 KRRYRVSTERLERLQEALNMYNGTRNFHNYTVQKSFFDASAKRHIKSFIVNPKPIIINDT 434
Query: 197 ELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQ 256
E ++LK+ GQSFM+HQIRKMVG+A I R T + I++++ + +P APGLGLLLE+
Sbjct: 435 EWLSLKVHGQSFMMHQIRKMVGLASLIVRCGTPMERIKESYQNQKMAIPKAPGLGLLLER 494
Query: 257 VHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
+ YN+K + E + F + D ++ F+ K I + E
Sbjct: 495 PVFHNYNRKATESLGKEGIDFDKYDDKIQAFKDKQIYTRIFSVE 538
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 72/136 (52%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M Y+G GY G+Q N KTIE D+ +A AG +++ + + P+
Sbjct: 109 VAVMIGYAGTGYKGMQV----------NGNEKTIEADLFKAFVAAGAISKANADDPKKSS 158
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A ++SLKL +E + IN LPEQIRI ++R F+ C+
Sbjct: 159 LVRCARTDKGVHAAGNVISLKLIIEDEDIVDKINAELPEQIRIWGLQRTNNAFSCYQTCD 218
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y P+Y P
Sbjct: 219 SRWYEYLMPSYCLLPP 234
>gi|18411027|ref|NP_565126.1| pseudouridine synthase-like protein [Arabidopsis thaliana]
gi|6573728|gb|AAF17648.1|AC009978_24 T23E18.5 [Arabidopsis thaliana]
gi|21592498|gb|AAM64448.1| unknown [Arabidopsis thaliana]
gi|21703099|gb|AAM74492.1| At1g76120/T23E18_5 [Arabidopsis thaliana]
gi|23308411|gb|AAN18175.1| At1g76120/T23E18_5 [Arabidopsis thaliana]
gi|332197677|gb|AEE35798.1| pseudouridine synthase-like protein [Arabidopsis thaliana]
Length = 463
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 109/220 (49%), Gaps = 3/220 (1%)
Query: 95 LPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQAL 154
L I+I ++ G S + R +C ++ K F + +
Sbjct: 212 LRSDIKIEALSSNLAGLCSVDVEVGRIQEDSCKLNTNSSETKVKSKFCYGEKEKERFSRI 271
Query: 155 LKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIR 214
L Y G++NFHNFT++ K DP+ +R I+SF DG++ I ++ G+SFMLHQIR
Sbjct: 272 LSCYVGSYNFHNFTTRTKADDPTANRQIISFTANTVINLDGIDFIKCEVLGKSFMLHQIR 331
Query: 215 KMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHE 273
KM+G+A+AI R S+ LI+ F D +PMAP +GL L++ + YN+ + + HE
Sbjct: 332 KMMGLAVAIMRNCASESLIQSAFSKDVNITVPMAPEVGLYLDECFFTSYNRNF--EDSHE 389
Query: 274 SLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELL 313
+ +E F+ K I ++ TE M WL L
Sbjct: 390 EVSMEAYKEEAEAFKLKHIYSHIGATERKYGNMALWLHSL 429
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 79/135 (58%), Gaps = 16/135 (11%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++FA+ GVGY G+Q +N G KTIEG++ EALF AG V E P+
Sbjct: 24 VAIIFAFCGVGYQGMQ----------KNPGAKTIEGELEEALFHAGAVPESIRGKPKLYD 73
Query: 61 FQRAARTDKGVSALKQIVSLKLPEE----ANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
F R+ARTDKGVSA+ Q+VS + + N+ +N +LP QIRI K VT F+SK
Sbjct: 74 FARSARTDKGVSAVGQVVSGRFIVDPLGFVNR--LNSNLPNQIRIFGYKHVTPSFSSKKF 131
Query: 117 CNARTYSYTCPTYAF 131
C+ R Y Y P +A
Sbjct: 132 CDRRRYVYLLPVFAL 146
>gi|299469782|emb|CBN76636.1| tRNA Pseudouridine Synthase [Ectocarpus siliculosus]
Length = 677
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 98/176 (55%), Gaps = 3/176 (1%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELIT 200
+RL PD+ L+ LK + GT N+HN+T+ +K D SC R I SF PF +G+E I
Sbjct: 495 YRLKPDRLEDLRETLKGFLGTKNYHNYTNHKKATDASCKRLITSFTASDPFEHEGMEWIR 554
Query: 201 LKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYD 260
L + GQSF++HQIRKMV + RG ++ + K+F ++ +L +AP GL LE+ Y+
Sbjct: 555 LTVGGQSFIMHQIRKMVASTVDRVRGQSNPEDFTKSFLPEKINLGIAPSDGLYLERPLYE 614
Query: 261 LYNQKYGQDGMHESLHFHEVD---KEVNEFRHKFILPYLVKTEITEKPMLAWLELL 313
YN+ + H+ L E + + +F+ I ++ E + +AWL+ +
Sbjct: 615 PYNKDVKRAKAHDRLLEWETGPAAEALEDFKKNKIHAGILAKEQADYDFVAWLDRI 670
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 80/137 (58%), Gaps = 15/137 (10%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ +Y G Y GLQ N+G +TIE ++ AL+ AG +++D+F P+ +
Sbjct: 193 VALLISYWGNNYQGLQI----------NKGARTIEAELELALYLAGTISKDNFGNPRKVS 242
Query: 61 FQRAARTDKGVSALKQIVSLKLP-----EEANKEAINEHLPEQIRILSIKRVTKGFNSKN 115
+ RA RTDKGV A Q++S+KL E E IN++LP+ IR + I+R K F+S+
Sbjct: 243 WSRAGRTDKGVHAAAQVISVKLTYLNDGERETVEKINKYLPDDIRAVDIRRAPKSFDSRT 302
Query: 116 NCNARTYSYTCPTYAFA 132
C+ R Y Y PTY A
Sbjct: 303 RCSGRRYEYIMPTYVLA 319
>gi|449328970|gb|AGE95245.1| pseudouridylate synthase 2 [Encephalitozoon cuniculi]
Length = 345
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/333 (27%), Positives = 149/333 (44%), Gaps = 56/333 (16%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ ++ Y G Y GLQ N+ + T+E I+E L + ++E + P+ I
Sbjct: 5 VGLLVGYDGSRYHGLQF----------NKDLDTVEKKIVECLLRMDAISERNAGDPRKIH 54
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKEAIN---EHLP-EQIRILSIKRVTKGFNSKNN 116
+ ++RTDKGV A +VS+K+ + E ++ E L E I + I R+TK
Sbjct: 55 IKSSSRTDKGVHAALNLVSVKIELGVSPELVSGLRELLSKEGIHLYDIVRLTKSIVPSKQ 114
Query: 117 CNARTYSYTCPTYAFAT--------------------------PQDTKDD---FRLTPDQ 147
+RTY Y PTY A P+ D + + D
Sbjct: 115 AISRTYEYIVPTYFLAEGDFSREVEVLSQGDEECRGDRIGRVYPESMIDSVVGYTSSEDD 174
Query: 148 FNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQS 207
+L++Y GT +FHNFT + +RYI S + +G+E + + I GQS
Sbjct: 175 TRVFSTILQKYVGTKDFHNFTKLNN--EKGSTRYIKSIIVSDAYTDNGVEYVKISITGQS 232
Query: 208 FMLHQIRKMVGVAMAIARGFTSKDLIEKTFGL----DQFDLPMAPGLGLLLEQVHYDLYN 263
F+LHQIRKMV A+ + R S++ ++ F + +P P LLL++ +++
Sbjct: 233 FLLHQIRKMVLFAVLLCR--YSRNAVDSKFDMVFSRHNIHVPKGPSEYLLLDK---PIFH 287
Query: 264 QKYGQDGMHESLHFHEVDKEVNEFRHKFILPYL 296
+ DG E + + D+E E++ I P +
Sbjct: 288 KLRRGDGTTEHIGVSDSDRE--EYKRSTIYPRI 318
>gi|378731692|gb|EHY58151.1| tRNA pseudouridine synthase A, variant [Exophiala dermatitidis
NIH/UT8656]
Length = 698
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 94/169 (55%), Gaps = 1/169 (0%)
Query: 136 DTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE-QPFVKD 194
+ K +R+ P++ +Q L Y GT N+HNFT ++ DPS R I SF P + +
Sbjct: 445 NAKRSYRIPPERLARIQEALNYYVGTKNYHNFTIQKTYRDPSSKRVIKSFKVNPDPILIN 504
Query: 195 GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLL 254
G E +++K+ GQSFM+HQIRKMVG+ + R I + G + +P AP LGLLL
Sbjct: 505 GTEWLSMKVHGQSFMMHQIRKMVGMIALVVRCGCDPHRIYEALGPENISIPKAPSLGLLL 564
Query: 255 EQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITE 303
E+ +D YN++ D E++ F + E++ F+ + I + + E E
Sbjct: 565 ERPVFDSYNKRAKGDLGKETIDFDKYRDEMDRFKQEQIYERMYRDEERE 613
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 75/138 (54%), Gaps = 16/138 (11%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ Y+G GY G+Q + KTIEGD+ +A AG +++ + + P+
Sbjct: 144 VAVLIGYAGTGYHGMQLTH----------DKKTIEGDLFKAFVAAGAISKANADDPKKSS 193
Query: 61 FQRAARTDKGVSALKQIVSLKL----PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
F R ARTDKGV A ++SLKL P+ K INE+L QIR+ +R F+S
Sbjct: 194 FVRCARTDKGVHAAGNVISLKLIIEDPDIVKK--INENLTPQIRVWGFERTNNSFSSYQA 251
Query: 117 CNARTYSYTCPTYAFATP 134
++R Y Y P+++F P
Sbjct: 252 VDSRIYEYLIPSHSFLPP 269
>gi|410083876|ref|XP_003959515.1| hypothetical protein KAFR_0K00250 [Kazachstania africana CBS 2517]
gi|372466107|emb|CCF60380.1| hypothetical protein KAFR_0K00250 [Kazachstania africana CBS 2517]
Length = 546
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 109/199 (54%), Gaps = 11/199 (5%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV--KDGLEL 198
+R++ ++ + +KQY HNFHNFT ++ DPS R++ +PFV + E
Sbjct: 285 YRISNEKLVKFRKAMKQYLNAHNFHNFTLGKEFKDPSAIRFMKQIKVSEPFVIGEAKTEW 344
Query: 199 ITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVH 258
+++KI GQSFMLHQIRKM+ +A I R T + I ++FG + ++P AP LGLLLE
Sbjct: 345 VSIKIHGQSFMLHQIRKMISMATLITRCGTPVERITQSFGPQKINIPKAPALGLLLESPV 404
Query: 259 YDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF 318
++ YN + + G ++ + F E++ F+ K I + K E+ E A+ + SF
Sbjct: 405 FEGYNARLEKFG-YQPIDFSRYQAEIDAFKMKHIYDKIYKEEVDENVFNAFFSYI--DSF 461
Query: 319 ETRAAKAALAAANGEELQE 337
+ ANGEE ++
Sbjct: 462 NK------VTGANGEETED 474
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 76/139 (54%), Gaps = 16/139 (11%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M Y G GY G+Q N TIE + +A AG +++D+ N +
Sbjct: 75 VAVMVGYCGTGYHGMQY----------NPPNPTIEAALFKAFVDAGAISKDNSNDLKKNG 124
Query: 61 FQRAARTDKGVSALKQIVSLKL----PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
F R+ARTDKGV A ++SLK+ PE K+ INE LPE IR+ I RV K F+ +
Sbjct: 125 FMRSARTDKGVHAGGNLISLKMIIEDPE--IKQKINEKLPEGIRVWDINRVNKAFDCRKM 182
Query: 117 CNARTYSYTCPTYAFATPQ 135
C++R Y Y PTY+ P+
Sbjct: 183 CSSRWYEYLLPTYSLIGPK 201
>gi|19074166|ref|NP_584772.1| PSEUDOURIDYLATE SYNTHASE 2 [Encephalitozoon cuniculi GB-M1]
gi|19068808|emb|CAD25276.1| PSEUDOURIDYLATE SYNTHASE 2 [Encephalitozoon cuniculi GB-M1]
Length = 345
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/331 (27%), Positives = 148/331 (44%), Gaps = 56/331 (16%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ ++ Y G Y GLQ N+ + T+E I+E L + ++E + P+ I
Sbjct: 5 VGLLVGYDGSRYHGLQF----------NKDLDTVEKKIVECLLRMDAISERNAGDPRKIH 54
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKEAIN---EHLP-EQIRILSIKRVTKGFNSKNN 116
+ ++RTDKGV A +VS+K+ + E ++ E L E I + I R+TK
Sbjct: 55 IKSSSRTDKGVHAALNLVSVKIELGVSPELVSGLRELLSKEGIHLYDIVRLTKSIVPSKQ 114
Query: 117 CNARTYSYTCPTYAFAT--------------------------PQDTKDD---FRLTPDQ 147
+RTY Y PTY A P+ D + + D
Sbjct: 115 AISRTYEYIVPTYFLAEGDFSREVEVLSQGDEECRGDRIGRVYPESMIDSVVGYTSSEDD 174
Query: 148 FNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQS 207
+L++Y GT +FHNFT + +RYI S + +G+E + + I GQS
Sbjct: 175 TRVFSTILQKYVGTKDFHNFTKLNN--EKGSTRYIKSIIVSDTYTDNGVEYVKISITGQS 232
Query: 208 FMLHQIRKMVGVAMAIARGFTSKDLIEKTFGL----DQFDLPMAPGLGLLLEQVHYDLYN 263
F+LHQIRKMV A+ + R S++ ++ F + +P P LLL++ +++
Sbjct: 233 FLLHQIRKMVLFAVLLCR--YSRNAVDSKFDMVFSRHNIHVPKGPSEYLLLDK---PIFH 287
Query: 264 QKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+ DG E + + D+E E++ I P
Sbjct: 288 KLRRGDGTTEHIGVSDSDRE--EYKRSTIYP 316
>gi|378731693|gb|EHY58152.1| tRNA pseudouridine synthase A [Exophiala dermatitidis NIH/UT8656]
Length = 700
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 94/169 (55%), Gaps = 1/169 (0%)
Query: 136 DTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE-QPFVKD 194
+ K +R+ P++ +Q L Y GT N+HNFT ++ DPS R I SF P + +
Sbjct: 447 NAKRSYRIPPERLARIQEALNYYVGTKNYHNFTIQKTYRDPSSKRVIKSFKVNPDPILIN 506
Query: 195 GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLL 254
G E +++K+ GQSFM+HQIRKMVG+ + R I + G + +P AP LGLLL
Sbjct: 507 GTEWLSMKVHGQSFMMHQIRKMVGMIALVVRCGCDPHRIYEALGPENISIPKAPSLGLLL 566
Query: 255 EQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITE 303
E+ +D YN++ D E++ F + E++ F+ + I + + E E
Sbjct: 567 ERPVFDSYNKRAKGDLGKETIDFDKYRDEMDRFKQEQIYERMYRDEERE 615
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 75/138 (54%), Gaps = 16/138 (11%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ Y+G GY G+Q + KTIEGD+ +A AG +++ + + P+
Sbjct: 146 VAVLIGYAGTGYHGMQLTH----------DKKTIEGDLFKAFVAAGAISKANADDPKKSS 195
Query: 61 FQRAARTDKGVSALKQIVSLKL----PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
F R ARTDKGV A ++SLKL P+ K INE+L QIR+ +R F+S
Sbjct: 196 FVRCARTDKGVHAAGNVISLKLIIEDPDIVKK--INENLTPQIRVWGFERTNNSFSSYQA 253
Query: 117 CNARTYSYTCPTYAFATP 134
++R Y Y P+++F P
Sbjct: 254 VDSRIYEYLIPSHSFLPP 271
>gi|367002137|ref|XP_003685803.1| hypothetical protein TPHA_0E02790 [Tetrapisispora phaffii CBS 4417]
gi|357524102|emb|CCE63369.1| hypothetical protein TPHA_0E02790 [Tetrapisispora phaffii CBS 4417]
Length = 558
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 107/199 (53%), Gaps = 3/199 (1%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV--KDGLEL 198
+R++P + + +++Y G HNFHNFT + +PS RY+ +PFV + E
Sbjct: 282 YRISPAKLIKFRGAMQKYLGAHNFHNFTLGKDFSEPSSIRYMKEITVSEPFVIGEAKTEW 341
Query: 199 ITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVH 258
+++KI GQSFMLHQIRKM+ +A I R + I+ +FG + ++P AP LGLLLE
Sbjct: 342 VSIKIHGQSFMLHQIRKMISMATLITRCGCPLERIDASFGPQKINIPKAPALGLLLESPV 401
Query: 259 YDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF 318
++ YN++ G + + F + E++EF+ K I + K E+ E A+ + +
Sbjct: 402 FEGYNKRLETFG-YNPIDFSKFKNEIDEFKLKHIYDKIYKEEVDENVFNAFYTYIDSFNM 460
Query: 319 ETRAAKAALAAANGEELQE 337
T A +G +Q+
Sbjct: 461 ATGANGVETEEKSGANVQK 479
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 74/137 (54%), Gaps = 12/137 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M Y G GY G+Q N TIE ++ A +AG ++ + N +
Sbjct: 72 VAVMVGYCGAGYHGMQ----------YNPPNDTIESELFRAFVRAGGISLANSNDLKKNG 121
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEAN--KEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F RAARTDKGV A ++SLK+ E K+ INE LPE IR+ +I+RV K F+ + C
Sbjct: 122 FMRAARTDKGVHAGGNLISLKMIIEDPDIKDKINEALPESIRVWNIERVNKAFDCRKMCG 181
Query: 119 ARTYSYTCPTYAFATPQ 135
+R Y Y PTY P+
Sbjct: 182 SRWYEYLLPTYTLLGPR 198
>gi|156087442|ref|XP_001611128.1| tRNA pseudouridine synthase [Babesia bovis T2Bo]
gi|154798381|gb|EDO07560.1| tRNA pseudouridine synthase, putative [Babesia bovis]
Length = 414
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/387 (24%), Positives = 165/387 (42%), Gaps = 65/387 (16%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
++ +Y G Y G Q + + G+ T+E ++ AL + N +Q
Sbjct: 31 IVLSYIGTNYHGFQIQR-----DAGDDGIDTVEARVINALVTTDAIHGSHKNNLGKLQLS 85
Query: 63 RAARTDKGVSALKQIVSLKL-------------PEEANKEAINEHLPEQIRILSIKRVTK 109
+A+RTDKGV A + + E+ +N LP+ IR + RVT+
Sbjct: 86 KASRTDKGVHAACTYIGGRFELSHLSAGEPGISKEQCLVSRLNTVLPDDIRCFQVLRVTR 145
Query: 110 GFNSKNNCNARTYSYTCP----TYAFATPQ-DTKDDFRLTPDQFN--------------- 149
GF +++ C+ R Y Y P Y + + D K F T + N
Sbjct: 146 GFCARSMCSKRMYEYVIPLSLLRYRYVCGEDDNKRTFEKTSNLMNLHMNSRQNIHCKRLS 205
Query: 150 -----------------FLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV 192
LQ++L Y G+H+F NFT ++K + + R+I E
Sbjct: 206 SVALHEGTTEERDVDMVLLQSILSDYCGSHDFKNFTQRQKVEEKTTQRFIHEIKVEGS-E 264
Query: 193 KDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQF---DLPMAPG 249
G+ + + I GQSF+ +QIRKM+G+ A+ G + I+ F L ++ + P+AP
Sbjct: 265 SIGINAVRVIITGQSFLYNQIRKMIGLGYAVYLGVAPRCAIK--FALSKWHAVNTPLAPA 322
Query: 250 LGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAW 309
GL L ++D YN++ + + +++ V F+ I P + T T+ W
Sbjct: 323 EGLFLHHPYFDAYNRRCSPPQT-PFIEYDDIESSVENFKRTRIYPEIASTFETD-VWKTW 380
Query: 310 LELLADHSFETRAAKAALA--AANGEE 334
+E L + F A ++ ++NG++
Sbjct: 381 MEKLLRNPFYLENADFHISDESSNGQK 407
>gi|374108673|gb|AEY97579.1| FAFL105Cp [Ashbya gossypii FDAG1]
Length = 528
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGL--EL 198
+R++ + + +KQY G HNFHN+T + DPS R++ PFV + E
Sbjct: 279 YRVSSAKLARFREAMKQYLGPHNFHNYTLGKDFKDPSTVRFMKDITVSDPFVIGEMKTEW 338
Query: 199 ITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVH 258
+++KI GQSFMLHQIRKM+ +A +AR S + I +++G + ++P AP LGLLLE
Sbjct: 339 VSIKIHGQSFMLHQIRKMISMATLVARCNCSPERIAQSYGPQKINIPKAPALGLLLESPV 398
Query: 259 YDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITE 303
Y+ YN++ + G +E + F KE++ F+ I + K E+ E
Sbjct: 399 YEGYNKRLLEFG-YEPIDFRNYQKEMDTFKMVHIYDKIYKEEVDE 442
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 76/137 (55%), Gaps = 12/137 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M Y G GY G+Q N +TIE ++ EA KAG ++ + +
Sbjct: 69 VAVMVGYCGTGYHGMQY----------NPPNRTIEAELFEAFVKAGAISRANSTDLKKNG 118
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F RAARTDKGV A ++SLKL + A K+ INEHLP IR+ I RV K F+ + C
Sbjct: 119 FMRAARTDKGVHAGGNVISLKLIIEDPAIKDKINEHLPPGIRVWGISRVNKAFDCRKLCG 178
Query: 119 ARTYSYTCPTYAFATPQ 135
+R Y Y PTY+F P+
Sbjct: 179 SRWYEYLLPTYSFIGPK 195
>gi|302308519|ref|NP_985445.2| AFL105Cp [Ashbya gossypii ATCC 10895]
gi|442570003|sp|Q755C8.2|PUS1_ASHGO RecName: Full=tRNA pseudouridine synthase 1; AltName: Full=tRNA
pseudouridylate synthase 1; AltName: Full=tRNA-uridine
isomerase 1
gi|299790670|gb|AAS53269.2| AFL105Cp [Ashbya gossypii ATCC 10895]
Length = 528
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGL--EL 198
+R++ + + +KQY G HNFHN+T + DPS R++ PFV + E
Sbjct: 279 YRVSSAKLARFREAMKQYLGPHNFHNYTLGKDFKDPSTVRFMKDITVSDPFVIGEMKTEW 338
Query: 199 ITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVH 258
+++KI GQSFMLHQIRKM+ +A +AR S + I +++G + ++P AP LGLLLE
Sbjct: 339 VSIKIHGQSFMLHQIRKMISMATLVARCNCSPERIAQSYGPQKINIPKAPALGLLLESPV 398
Query: 259 YDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITE 303
Y+ YN++ + G +E + F KE++ F+ I + K E+ E
Sbjct: 399 YEGYNKRLLEFG-YEPIDFRNYQKEMDTFKMVHIYDKIYKEEVDE 442
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 76/137 (55%), Gaps = 12/137 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M Y G GY G+Q N +TIE ++ EA KAG ++ + +
Sbjct: 69 VAVMVGYCGTGYHGMQY----------NPPNRTIEAELFEAFVKAGAISRANSTDLKKNG 118
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F RAARTDKGV A ++SLKL + A K+ INEHLP IR+ I RV K F+ + C
Sbjct: 119 FMRAARTDKGVHAGGNVISLKLIIEDPAIKDKINEHLPPGIRVWGISRVNKAFDCRKLCG 178
Query: 119 ARTYSYTCPTYAFATPQ 135
+R Y Y PTY+F P+
Sbjct: 179 SRWYEYLLPTYSFIGPK 195
>gi|238493757|ref|XP_002378115.1| tRNA pseudouridine synthase, putative [Aspergillus flavus NRRL3357]
gi|317157361|ref|XP_003190833.1| tRNA pseudouridine synthase [Aspergillus oryzae RIB40]
gi|220696609|gb|EED52951.1| tRNA pseudouridine synthase, putative [Aspergillus flavus NRRL3357]
Length = 601
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 97/165 (58%), Gaps = 2/165 (1%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE-QPFVKDG 195
K +R+ P + LQ L +Y GT NF+N+T ++ DPS R+I SF + P + +G
Sbjct: 361 AKRSYRIPPARVARLQEALDKYLGTKNFYNYTIQKLYKDPSAKRHIKSFKVDPNPIIING 420
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
E ++LK+ GQSFM+HQIRKMV +A I R I ++G + +P APGLGLLLE
Sbjct: 421 TEWLSLKVHGQSFMMHQIRKMVAMATLIVRCGCDPKRIVDSYGPTKIPIPKAPGLGLLLE 480
Query: 256 QVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
+ ++ Y++K + G + ++F E+NEF+ + I + + E
Sbjct: 481 RPIFNGYSKKAEELG-KKPINFEVYATEMNEFKQREIYDRIFREE 524
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 73/139 (52%), Gaps = 12/139 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ YSG GY G+Q + KTIEGD+ A AG +++ + P+
Sbjct: 119 VAVLLGYSGTGYKGMQ----------LSATEKTIEGDLFAAFVAAGAISKANAADPKKSS 168
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A +VSLKL +E + IN HL QIR+ I +K F+S C+
Sbjct: 169 LVRCARTDKGVHAAGNVVSLKLIVEDEDIVQKINAHLSPQIRVWGILVASKSFSSYQMCD 228
Query: 119 ARTYSYTCPTYAFATPQDT 137
+R Y Y P+Y F P +
Sbjct: 229 SRIYEYLMPSYCFLPPHPS 247
>gi|169783932|ref|XP_001826428.1| tRNA pseudouridine synthase [Aspergillus oryzae RIB40]
gi|83775172|dbj|BAE65295.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 563
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 97/165 (58%), Gaps = 2/165 (1%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE-QPFVKDG 195
K +R+ P + LQ L +Y GT NF+N+T ++ DPS R+I SF + P + +G
Sbjct: 323 AKRSYRIPPARVARLQEALDKYLGTKNFYNYTIQKLYKDPSAKRHIKSFKVDPNPIIING 382
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
E ++LK+ GQSFM+HQIRKMV +A I R I ++G + +P APGLGLLLE
Sbjct: 383 TEWLSLKVHGQSFMMHQIRKMVAMATLIVRCGCDPKRIVDSYGPTKIPIPKAPGLGLLLE 442
Query: 256 QVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
+ ++ Y++K + G + ++F E+NEF+ + I + + E
Sbjct: 443 RPIFNGYSKKAEELG-KKPINFEVYATEMNEFKQREIYDRIFREE 486
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 72/136 (52%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ YSG GY G+Q + KTIEGD+ A AG +++ + P+
Sbjct: 81 VAVLLGYSGTGYKGMQ----------LSATEKTIEGDLFAAFVAAGAISKANAADPKKSS 130
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A +VSLKL +E + IN HL QIR+ I +K F+S C+
Sbjct: 131 LVRCARTDKGVHAAGNVVSLKLIVEDEDIVQKINAHLSPQIRVWGILVASKSFSSYQMCD 190
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y P+Y F P
Sbjct: 191 SRIYEYLMPSYCFLPP 206
>gi|391869504|gb|EIT78701.1| pseudouridylate synthase [Aspergillus oryzae 3.042]
Length = 563
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 97/165 (58%), Gaps = 2/165 (1%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE-QPFVKDG 195
K +R+ P + LQ L +Y GT NF+N+T ++ DPS R+I SF + P + +G
Sbjct: 323 AKRSYRIPPARVARLQEALDKYLGTKNFYNYTIQKLYKDPSAKRHIKSFKVDPNPIIING 382
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
E ++LK+ GQSFM+HQIRKMV +A I R I ++G + +P APGLGLLLE
Sbjct: 383 TEWLSLKVHGQSFMMHQIRKMVAMATLIVRCGCDPKRIVDSYGPTKIPIPKAPGLGLLLE 442
Query: 256 QVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
+ ++ Y++K + G + ++F E+NEF+ + I + + E
Sbjct: 443 RPIFNGYSKKAEELG-KKPINFEVYATEMNEFKQREIYDRIFREE 486
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 72/136 (52%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ YSG GY G+Q + KTIEGD+ A AG +++ + P+
Sbjct: 81 VAVLLGYSGTGYKGMQ----------LSATEKTIEGDLFAAFVAAGAISKANAADPKKSS 130
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A +VSLKL +E + IN HL QIR+ I +K F+S C+
Sbjct: 131 LVRCARTDKGVHAAGNVVSLKLIVEDEDIVQKINAHLSPQIRVWGILVASKSFSSYQMCD 190
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y P+Y F P
Sbjct: 191 SRIYEYLMPSYCFLPP 206
>gi|315050550|ref|XP_003174649.1| tRNA pseudouridine synthase 1 [Arthroderma gypseum CBS 118893]
gi|311339964|gb|EFQ99166.1| tRNA pseudouridine synthase 1 [Arthroderma gypseum CBS 118893]
Length = 582
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 96/158 (60%), Gaps = 2/158 (1%)
Query: 136 DTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQ-PFVKD 194
+ K+++R+ P++ + A L Y GT NFHN+T ++ D S R I SF + P V +
Sbjct: 344 EAKNEYRIPPERLARINAALALYVGTKNFHNYTIQKTFRDASARRLIKSFKISRDPVVIN 403
Query: 195 GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLL 254
G E ++LK+ GQSFM+HQIRKMV + + R + I +++ + +P APGLGLLL
Sbjct: 404 GTEWLSLKVHGQSFMMHQIRKMVAMVALLVRCGADINRINESYQNSRIPIPKAPGLGLLL 463
Query: 255 EQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFI 292
E+ +D YN+K G E L F + +KE++EF+ K I
Sbjct: 464 ERPIFDGYNKKAEVLG-REILDFDKYEKEMDEFKLKEI 500
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 72/136 (52%), Gaps = 16/136 (11%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
+M YSG GY G+Q C + KTIEGD+ A A +++ + P+ F
Sbjct: 104 VMLGYSGTGYHGMQ--------LCPTE--KTIEGDLFAAFVAANAISKANAVDPKKSSFV 153
Query: 63 RAARTDKGVSALKQIVSLKL----PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A +VSLKL P+ K INE L QIR+ I TKGF++ C+
Sbjct: 154 RCARTDKGVHAAGNVVSLKLIIEDPDVVQK--INEKLNPQIRVWGIIPATKGFSAYQFCD 211
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y P++ F P
Sbjct: 212 SRMYEYLIPSHCFLPP 227
>gi|19113277|ref|NP_596485.1| tRNA pseudouridine synthase Pus2 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|74676179|sp|O94295.1|PUS2_SCHPO RecName: Full=tRNA pseudouridine synthase 2; AltName: Full=tRNA
pseudouridylate synthase 2; AltName: Full=tRNA-uridine
isomerase 2
gi|3850107|emb|CAA21896.1| tRNA pseudouridine synthase Pus2 (predicted) [Schizosaccharomyces
pombe]
Length = 451
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 98/179 (54%), Gaps = 3/179 (1%)
Query: 140 DFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELI 199
++R+ D+ LQ LLK+YEG HNFHNFT PS R+I S C PFV + E I
Sbjct: 266 NYRIKEDRLKVLQQLLKKYEGRHNFHNFTVTDDSTSPSNYRFIESVTCGTPFVYENWEWI 325
Query: 200 TLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMAPGLGLLLEQVH 258
+ IKG SFML+QIRKM+ + I R LI+K F + ++ +PG LLL+ +
Sbjct: 326 PVTIKGNSFMLNQIRKMMAHVLMIIRSCAPTGLIDKAFDPNITMNISKSPGHVLLLKDIK 385
Query: 259 YDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHS 317
+ YN DG+ E + F ++++ + K I P ++K E EK ++L + H+
Sbjct: 386 FSSYNDSV-TDGL-EKIQFDCFEEDILSLKIKTIYPDIIKLEQKEKLFFSFLSYIDQHT 442
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 82/148 (55%), Gaps = 17/148 (11%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ ++ YSG GY G+Q N +KTIEGD++ L K G++ ++ + +++
Sbjct: 41 IIILLGYSGYGYHGIQI----------NNPLKTIEGDVVAVLKKLGYLKTNNIDA-EHLC 89
Query: 61 FQRAARTDKGVSALKQIVSLKL----PEEAN--KEAINEHLPEQIRILSIKRVTKGFNSK 114
RAARTDKGV L+ ++SL L P + + K +NE L QIR+ S+ K FN +
Sbjct: 90 IARAARTDKGVHTLRNLISLNLFVDKPLDISLLKTELNEALCSQIRVWSVFPAPKYFNPR 149
Query: 115 NNCNARTYSYTCPTYAFATPQDTKDDFR 142
+C +RTY Y P++A P+ + F+
Sbjct: 150 ISCESRTYEYLIPSFALLPPKPSCPLFK 177
>gi|367014979|ref|XP_003681989.1| hypothetical protein TDEL_0E05350 [Torulaspora delbrueckii]
gi|359749650|emb|CCE92778.1| hypothetical protein TDEL_0E05350 [Torulaspora delbrueckii]
Length = 431
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 106/198 (53%), Gaps = 3/198 (1%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV--KDGLEL 198
FR++ D+ A +KQY G HNFHNFT + + S R++ +PFV E
Sbjct: 197 FRISQDKLKKFDATMKQYLGAHNFHNFTLGKDFKESSAIRFMKEIKVSEPFVIGDAKTEW 256
Query: 199 ITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVH 258
I++KI GQSFMLHQIRKM+ +A I R + I + +G + ++P AP LGLLLE
Sbjct: 257 ISIKIHGQSFMLHQIRKMISMATLITRCGCPIERISQAYGQQKLNIPKAPALGLLLEAPV 316
Query: 259 YDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF 318
++ YN + + G ++ + F + E++ F+ K I + K E+ E A+ + +
Sbjct: 317 FEGYNTRLEKFG-YKPIEFSKHQAEIDAFKMKHIYDKIYKEEVDENVFNAFFSYIDNFDK 375
Query: 319 ETRAAKAALAAANGEELQ 336
T A + A +G ++Q
Sbjct: 376 VTGAHGSETAEKSGNDVQ 393
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 63/105 (60%), Gaps = 2/105 (1%)
Query: 33 TIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLPEEAN--KEA 90
TIE ++ A +AG +++ + N + F RAARTDKGV A ++SLKL E KE
Sbjct: 9 TIEAELFRAFVEAGAISKANSNDLKKNGFMRAARTDKGVHAGGNLISLKLIIEDPQIKEK 68
Query: 91 INEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQ 135
INE LPE IRI I+RV K F+ + C +R Y Y PTY+ P+
Sbjct: 69 INEKLPEGIRIWDIERVNKAFDCRKMCGSRWYEYLLPTYSLIGPK 113
>gi|403215359|emb|CCK69858.1| hypothetical protein KNAG_0D01060 [Kazachstania naganishii CBS
8797]
Length = 550
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV--KDGLEL 198
+R++ ++ ++ +KQY HNFHNFT + DPS R++ +PFV E
Sbjct: 288 YRISKEKLTKFRSAMKQYINAHNFHNFTLGKDFKDPSAIRFMKEIKVSEPFVIGDAQTEW 347
Query: 199 ITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVH 258
+++KI GQSFMLHQIRKM+ +A I R T + I + +G + ++P AP LGLLLE
Sbjct: 348 VSIKIHGQSFMLHQIRKMISMATLITRCGTPVERISQAYGPQKINIPKAPALGLLLESPV 407
Query: 259 YDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITE 303
Y+ YN + + G ++ + F + E++ F+ K I + K E+ +
Sbjct: 408 YEGYNSRLEKFG-YDPIDFSKYQNEIDAFKMKHIYDKIYKEEVDD 451
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 75/137 (54%), Gaps = 12/137 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M Y G GY G+Q N TIE + +A +G +++D+ N +
Sbjct: 78 VAVMVGYCGTGYCGMQ----------YNPPNPTIEATLFKAFCDSGAISQDNANDLKKNG 127
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F RAARTDKGV A ++S+KL + K+ INE LPE IR+ I RV K F+ + C+
Sbjct: 128 FMRAARTDKGVHAGGNLISVKLIIEDPTIKQKINECLPEGIRVWDINRVNKAFDCRKMCS 187
Query: 119 ARTYSYTCPTYAFATPQ 135
+R Y Y PTY+ P+
Sbjct: 188 SRWYEYLLPTYSLIGPK 204
>gi|7670391|dbj|BAA95047.1| unnamed protein product [Mus musculus]
Length = 257
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 103/185 (55%), Gaps = 37/185 (20%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G +TIE D++ AL +AG + E+ +
Sbjct: 82 IVLLMAYSGKGYHGMQ----------RNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMR 131
Query: 58 NIQFQRAARTDK------------------GVSALKQIVSLKLPE-EANKEAINEHLPEQ 98
+ FQR ARTDK GVSA Q+VSLK+ + + IN HLP
Sbjct: 132 KMSFQRCARTDKPLRTSACFCLYTGFLFHWGVSAAGQVVSLKVWLIDDILDKINSHLPSH 191
Query: 99 IRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFA-TPQDTKDD-FRLTPD---QFNFLQA 153
IRIL +KRVT GFNSKN C+ARTY Y PT+AFA +D +D+ +RL+ + Q N
Sbjct: 192 IRILGLKRVTGGFNSKNKCDARTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNPPSG 251
Query: 154 LLKQY 158
LL+++
Sbjct: 252 LLQRH 256
>gi|367049226|ref|XP_003654992.1| hypothetical protein THITE_2118253 [Thielavia terrestris NRRL 8126]
gi|347002256|gb|AEO68656.1| hypothetical protein THITE_2118253 [Thielavia terrestris NRRL 8126]
Length = 569
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 91/157 (57%), Gaps = 2/157 (1%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE-QPFVKDG 195
K +R+TP + LQ L Y GT N+HN+T + D S R+I SF P V
Sbjct: 343 AKRRYRVTPPRIERLQQALDLYVGTRNYHNYTVLKSYGDASAKRHIKSFRVNPAPIVIGD 402
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
E ++LK+ GQSFM+HQIRKMV +A+ + R D I +++G + +P APGLGL+LE
Sbjct: 403 TEWLSLKVHGQSFMMHQIRKMVAMAVMVVRCGAPLDTILQSYGPRRISIPKAPGLGLMLE 462
Query: 256 QVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFI 292
+ + YN++ + G E + F + + ++ EF+ K I
Sbjct: 463 RPMFTEYNKRAARLG-REPIDFAKYEDKIAEFKDKHI 498
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 77/137 (56%), Gaps = 12/137 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ Y+G GY G+Q N KTIEGDI A AG +++ + + P+
Sbjct: 74 VAVLIGYAGTGYHGIQI----------NHKEKTIEGDIFAAFVAAGAISKANADDPKKSS 123
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A ++SLKL +E + IN+HLPEQIR+ I+R GF+ C+
Sbjct: 124 LVRCARTDKGVHAAGNVLSLKLIVEDEDVVDRINQHLPEQIRVWGIQRTNNGFSCYQACD 183
Query: 119 ARTYSYTCPTYAFATPQ 135
+R Y Y P+YA PQ
Sbjct: 184 SRWYEYLMPSYALLPPQ 200
>gi|115442996|ref|XP_001218305.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114188174|gb|EAU29874.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 1199
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 96/165 (58%), Gaps = 1/165 (0%)
Query: 138 KDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE-QPFVKDGL 196
K +R+ + +Q L++Y GT+NF N+T ++ D S R+I SF + +P + +G
Sbjct: 332 KRAYRIPSSRLTRVQVALEKYVGTNNFWNYTIQKTFTDASAKRHIKSFKLDPKPVIINGT 391
Query: 197 ELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQ 256
E ++LK+ GQSFM+HQIRKMV +A + R IE +G + +P APGLGLLLE+
Sbjct: 392 EWLSLKVHGQSFMMHQIRKMVAMATLVVRCGCDPKRIEDAYGPTKIAIPKAPGLGLLLER 451
Query: 257 VHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEI 301
++ YN+K + + F E + +NEF+ + I + + E+
Sbjct: 452 PVFESYNKKGALVNNKKPIDFDEYAETMNEFKQREIYDRIFREEV 496
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 71/139 (51%), Gaps = 16/139 (11%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ YSG GY G+Q + KTIEG++ A AG +++ + P+
Sbjct: 81 VAVLLGYSGTGYKGMQ----------LSDTEKTIEGELFTAFVAAGAISKANAADPKKSS 130
Query: 61 FQRAARTDKGVSALKQIVSLKL----PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
R ARTDKGV A +VSLKL P+ K INE L QIR+ I K F++
Sbjct: 131 LVRCARTDKGVHAAGNVVSLKLIVEDPDIVQK--INEKLSPQIRVWDILVANKSFSAYQM 188
Query: 117 CNARTYSYTCPTYAFATPQ 135
C++R Y Y PTY F P
Sbjct: 189 CDSRIYEYLIPTYCFLPPH 207
>gi|449303254|gb|EMC99262.1| hypothetical protein BAUCODRAFT_129467 [Baudoinia compniacensis
UAMH 10762]
Length = 708
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 8/160 (5%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE-QPFV------- 192
+R+ + +QA L ++ GTHN+HN+T ++ DPS R+I SF +P +
Sbjct: 483 YRIPTQRIARIQAALDKFVGTHNYHNYTVQKTYRDPSAKRHIKSFVVNPKPILIGEGDDE 542
Query: 193 KDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGL 252
D E ++LK+ GQSFM+HQIRKM+G+ + R ++ D + +FG D++ +P PGLGL
Sbjct: 543 ADKSEWLSLKVHGQSFMMHQIRKMIGMVTLLVRCGSNLDTLSHSFGEDKYSIPKVPGLGL 602
Query: 253 LLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFI 292
LLE+ +D YN L F + ++E+ EF+ + I
Sbjct: 603 LLERPVFDSYNNIQAAKHDRPPLLFGKFEREMEEFKQREI 642
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 73/136 (53%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ YSG GY G+Q +TIEGD+ A +AG +++ + P+ +
Sbjct: 149 VAVLIGYSGTGYKGMQI----------TPSERTIEGDLFAAFIRAGAISKANAEDPKKVS 198
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A ++SLKL +E E IN+ L QIR+ ++R F+ C+
Sbjct: 199 LVRCARTDKGVHAAGNMISLKLIVEDEDIVERINKELSPQIRVWGVERTVGSFSCYQACD 258
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y P++AF P
Sbjct: 259 SRWYEYLIPSHAFLPP 274
>gi|347841293|emb|CCD55865.1| similar to tRNA pseudouridine synthase [Botryotinia fuckeliana]
Length = 631
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 97/176 (55%), Gaps = 1/176 (0%)
Query: 142 RLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDC-EQPFVKDGLELIT 200
R+ + +Q L QY GT+NFHN+T + D S R+I SF QP + E ++
Sbjct: 416 RIHESRRERVQEALNQYVGTYNFHNYTILKSFKDASSKRHIKSFKIGAQPIIIHDTEWLS 475
Query: 201 LKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYD 260
LK+ GQSFM+HQIRKMV +A + R + +LI++T+ + +P AP LGLLLE +
Sbjct: 476 LKVHGQSFMMHQIRKMVAMAALVVRCASPMELIKETYTAAKISIPKAPSLGLLLEAPVFH 535
Query: 261 LYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADH 316
YN+K +D E L F + ++++EF+ + I + + E E + L H
Sbjct: 536 NYNEKIAKDFDREKLDFEKYREKMDEFKQREIYDRIFRVENAENQFHTFFHHLDHH 591
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 77/136 (56%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M Y+G GY GLQ N KTIEGD+ +A AG +++ + N P+
Sbjct: 100 VAVMIGYAGTGYKGLQI----------NTKEKTIEGDMFKAFVAAGAISKANANDPKKSA 149
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK--EAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A ++SLKL E K E IN HLP+QIR+ I+R T FN C+
Sbjct: 150 LIRCARTDKGVHAAGNVLSLKLIIEDPKVVENINSHLPDQIRVWGIERTTGSFNCYQMCD 209
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y PTY+F P
Sbjct: 210 SRWYEYLIPTYSFIPP 225
>gi|154300700|ref|XP_001550765.1| hypothetical protein BC1G_10938 [Botryotinia fuckeliana B05.10]
Length = 631
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 97/176 (55%), Gaps = 1/176 (0%)
Query: 142 RLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDC-EQPFVKDGLELIT 200
R+ + +Q L QY GT+NFHN+T + D S R+I SF QP + E ++
Sbjct: 416 RIHESRRERVQEALNQYVGTYNFHNYTILKSFKDASSKRHIKSFKIGTQPIIIHDTEWLS 475
Query: 201 LKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYD 260
LK+ GQSFM+HQIRKMV +A + R + +LI++T+ + +P AP LGLLLE +
Sbjct: 476 LKVHGQSFMMHQIRKMVAMAALVVRCASPMELIKETYTAAKISIPKAPSLGLLLEAPVFH 535
Query: 261 LYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADH 316
YN+K +D E L F + ++++EF+ + I + + E E + L H
Sbjct: 536 NYNEKIAKDFDREKLDFEKYREKMDEFKQREIYDRIFRVENAENQFHTFFHHLDHH 591
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 77/136 (56%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M Y+G GY GLQ N KTIEGD+ +A AG +++ + N P+
Sbjct: 100 VAVMIGYAGTGYKGLQI----------NTKEKTIEGDMFKAFVAAGAISKANANDPKKSA 149
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK--EAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A ++SLKL E K E IN HLP+QIR+ I+R T FN C+
Sbjct: 150 LIRCARTDKGVHAAGNVLSLKLIIEDPKVVENINSHLPDQIRVWGIERTTGSFNCYQMCD 209
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y PTY+F P
Sbjct: 210 SRWYEYLIPTYSFIPP 225
>gi|349581609|dbj|GAA26766.1| K7_Pus1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 544
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 106/199 (53%), Gaps = 3/199 (1%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV--KDGLEL 198
+R++ + +A QY G HNFHNFT + +PS R++ PFV E
Sbjct: 287 YRISAAKLAKFRASTSQYLGAHNFHNFTLGKDFKEPSAIRFMKDIKVSDPFVIGDAQTEW 346
Query: 199 ITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVH 258
I++KI GQSFMLHQIRKMV +A I R + I + +G + ++P AP LGLLLE
Sbjct: 347 ISIKIHGQSFMLHQIRKMVSMATLITRCGCPVERISQAYGQQKINIPKAPALGLLLEAPV 406
Query: 259 YDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF 318
++ YN++ Q G ++++ F + EV++F+ K I + K E+ E A+ + +
Sbjct: 407 FEGYNKRLEQFG-YKAIDFSKYQDEVDKFKMKHIYDKIYKEEVDENVFNAFFSYIDSFNK 465
Query: 319 ETRAAKAALAAANGEELQE 337
T A A +G +Q+
Sbjct: 466 VTGAQGEETADKSGPAVQK 484
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 77/137 (56%), Gaps = 12/137 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M Y G GY G+Q N TIE + +A +AG +++D+ N +
Sbjct: 77 VAVMVGYCGTGYHGMQY----------NPPNPTIESALFKAFVEAGAISKDNSNDLKKNG 126
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEAN--KEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F RAARTDKGV A ++SLK+ E K+ INE LPE IR+ I+RV K F+ + C+
Sbjct: 127 FMRAARTDKGVHAGGNLISLKMIIEDPDIKQKINEKLPEGIRVWDIERVNKAFDCRKMCS 186
Query: 119 ARTYSYTCPTYAFATPQ 135
+R Y Y PTY+ P+
Sbjct: 187 SRWYEYLLPTYSLIGPK 203
>gi|164661239|ref|XP_001731742.1| hypothetical protein MGL_1010 [Malassezia globosa CBS 7966]
gi|159105643|gb|EDP44528.1| hypothetical protein MGL_1010 [Malassezia globosa CBS 7966]
Length = 226
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 82/143 (57%), Gaps = 18/143 (12%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ F Y G Y GLQ N G+KTIEGDI EA +AG V++++ P +Q
Sbjct: 79 VALFFGYCGTDYSGLQV----------NPGVKTIEGDIFEAFCRAGAVSKENAVNPNKVQ 128
Query: 61 FQRAARTDKGVSALKQIVSLKL--------PEEANKEAINEHLPEQIRILSIKRVTKGFN 112
QRAARTD+GV A +++LKL P + +N LP+QIRI ++RV FN
Sbjct: 129 LQRAARTDRGVHAAGNLLTLKLILDPPNLPPNQTLTTYVNSLLPDQIRIWGMRRVQSAFN 188
Query: 113 SKNNCNARTYSYTCPTYAFATPQ 135
++ +C++R Y Y PTY F P+
Sbjct: 189 ARTSCDSRLYEYLLPTYVFLPPK 211
>gi|323331140|gb|EGA72558.1| Pus1p [Saccharomyces cerevisiae AWRI796]
Length = 465
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 106/199 (53%), Gaps = 3/199 (1%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV--KDGLEL 198
+R++ + +A QY G HNFHNFT + +PS R++ PFV E
Sbjct: 208 YRISAAKLAKFRASTSQYLGAHNFHNFTLGKDFKEPSAIRFMKDIKVSDPFVIGDAQTEW 267
Query: 199 ITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVH 258
I++KI GQSFMLHQIRKMV +A I R + I + +G + ++P AP LGLLLE
Sbjct: 268 ISIKIHGQSFMLHQIRKMVSMATLITRCGCPVERISQAYGQQKINIPKAPALGLLLEAPV 327
Query: 259 YDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF 318
++ YN++ Q G ++++ F + EV++F+ K I + K E+ E A+ + +
Sbjct: 328 FEGYNKRLEQFG-YKAIDFSKYQDEVDKFKMKHIYDKIYKEEVDENVFNAFFSYIDSFNK 386
Query: 319 ETRAAKAALAAANGEELQE 337
T A A +G +Q+
Sbjct: 387 VTGAQGEETADKSGPAVQK 405
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 74/134 (55%), Gaps = 12/134 (8%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
M Y G GY G+Q N TIE + +A +AG +++D+ N + F R
Sbjct: 1 MVGYCGTGYHGMQY----------NPPNPTIESALFKAFVEAGAISKDNSNDLKKNGFMR 50
Query: 64 AARTDKGVSALKQIVSLKLPEEAN--KEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
AARTDKGV A ++SLK+ E K+ INE LPE IR+ I+RV K F+ + C++R
Sbjct: 51 AARTDKGVHAGGNLISLKMIIEDPDIKQKINEKLPEGIRVWDIERVNKAFDCRKMCSSRW 110
Query: 122 YSYTCPTYAFATPQ 135
Y Y PTY+ P+
Sbjct: 111 YEYLLPTYSLIGPK 124
>gi|207340711|gb|EDZ68976.1| YPL212Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 544
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 106/199 (53%), Gaps = 3/199 (1%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV--KDGLEL 198
+R++ + +A QY G HNFHNFT + +PS R++ PFV E
Sbjct: 287 YRISAAKLAKFRASTSQYLGAHNFHNFTLGKDFKEPSAIRFMKDIKVSDPFVIGDAQTEW 346
Query: 199 ITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVH 258
I++KI GQSFMLHQIRKMV +A I R + I + +G + ++P AP LGLLLE
Sbjct: 347 ISIKIHGQSFMLHQIRKMVSMATLITRCGCPVERISQAYGQQKINIPKAPALGLLLEAPV 406
Query: 259 YDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF 318
++ YN++ Q G ++++ F + EV++F+ K I + K E+ E A+ + +
Sbjct: 407 FEGYNKRLEQFG-YKAIDFSKYQDEVDKFKMKHIYDKIYKEEVDENVFNAFFSYIDSFNK 465
Query: 319 ETRAAKAALAAANGEELQE 337
T A A +G +Q+
Sbjct: 466 VTGAQGEETADKSGPAVQK 484
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 77/137 (56%), Gaps = 12/137 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M Y G GY G+Q N TIE + +A +AG +++D+ N +
Sbjct: 77 VAVMVGYCGTGYHGMQY----------NPPNPTIESALFKAFVEAGAISKDNSNDLKKNG 126
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEAN--KEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F RAARTDKGV A ++SLK+ E K+ INE LPE IR+ I+RV K F+ + C+
Sbjct: 127 FMRAARTDKGVHAGGNLISLKMIIEDPDIKQKINEKLPEGIRVWDIERVNKAFDCRKMCS 186
Query: 119 ARTYSYTCPTYAFATPQ 135
+R Y Y PTY+ P+
Sbjct: 187 SRWYEYLLPTYSLIGPK 203
>gi|6325044|ref|NP_015112.1| pseudouridine synthase PUS1 [Saccharomyces cerevisiae S288c]
gi|3122655|sp|Q12211.1|PUS1_YEAST RecName: Full=tRNA pseudouridine synthase 1; AltName: Full=tRNA
pseudouridylate synthase 1; AltName: Full=tRNA-uridine
isomerase 1
gi|1370440|emb|CAA97927.1| PUS1 [Saccharomyces cerevisiae]
gi|1403091|emb|CAA56698.1| pseudouridine synthase 1 [Saccharomyces cerevisiae]
gi|151942589|gb|EDN60935.1| tRNA-pseudouridine synthase [Saccharomyces cerevisiae YJM789]
gi|190407751|gb|EDV11016.1| tRNA pseudouridine synthase [Saccharomyces cerevisiae RM11-1a]
gi|259149945|emb|CAY86748.1| Pus1p [Saccharomyces cerevisiae EC1118]
gi|285815332|tpg|DAA11224.1| TPA: pseudouridine synthase PUS1 [Saccharomyces cerevisiae S288c]
gi|392296223|gb|EIW07326.1| Pus1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 544
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 106/199 (53%), Gaps = 3/199 (1%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV--KDGLEL 198
+R++ + +A QY G HNFHNFT + +PS R++ PFV E
Sbjct: 287 YRISAAKLAKFRASTSQYLGAHNFHNFTLGKDFKEPSAIRFMKDIKVSDPFVIGDAQTEW 346
Query: 199 ITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVH 258
I++KI GQSFMLHQIRKMV +A I R + I + +G + ++P AP LGLLLE
Sbjct: 347 ISIKIHGQSFMLHQIRKMVSMATLITRCGCPVERISQAYGQQKINIPKAPALGLLLEAPV 406
Query: 259 YDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF 318
++ YN++ Q G ++++ F + EV++F+ K I + K E+ E A+ + +
Sbjct: 407 FEGYNKRLEQFG-YKAIDFSKYQDEVDKFKMKHIYDKIYKEEVDENVFNAFFSYIDSFNK 465
Query: 319 ETRAAKAALAAANGEELQE 337
T A A +G +Q+
Sbjct: 466 VTGAQGEETADKSGPAVQK 484
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 77/137 (56%), Gaps = 12/137 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M Y G GY G+Q N TIE + +A +AG +++D+ N +
Sbjct: 77 VAVMVGYCGTGYHGMQY----------NPPNPTIESALFKAFVEAGAISKDNSNDLKKNG 126
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEAN--KEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F RAARTDKGV A ++SLK+ E K+ INE LPE IR+ I+RV K F+ + C+
Sbjct: 127 FMRAARTDKGVHAGGNLISLKMIIEDPDIKQKINEKLPEGIRVWDIERVNKAFDCRKMCS 186
Query: 119 ARTYSYTCPTYAFATPQ 135
+R Y Y PTY+ P+
Sbjct: 187 SRWYEYLLPTYSLIGPK 203
>gi|323335274|gb|EGA76563.1| Pus1p [Saccharomyces cerevisiae Vin13]
Length = 545
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 106/199 (53%), Gaps = 3/199 (1%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV--KDGLEL 198
+R++ + +A QY G HNFHNFT + +PS R++ PFV E
Sbjct: 288 YRISAAKLAKFRASTSQYLGAHNFHNFTLGKDFKEPSAIRFMKDIKVSDPFVIGDAQTEW 347
Query: 199 ITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVH 258
I++KI GQSFMLHQIRKMV +A I R + I + +G + ++P AP LGLLLE
Sbjct: 348 ISIKIHGQSFMLHQIRKMVSMATLITRCGCPVERISQAYGQQKINIPKAPALGLLLEAPV 407
Query: 259 YDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF 318
++ YN++ Q G ++++ F + EV++F+ K I + K E+ E A+ + +
Sbjct: 408 FEGYNKRLEQFG-YKAIDFSKYQDEVDKFKMKHIYDKIYKEEVDENVFNAFFSYIDSFNK 466
Query: 319 ETRAAKAALAAANGEELQE 337
T A A +G +Q+
Sbjct: 467 VTGAQGEETADKSGPAVQK 485
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 77/137 (56%), Gaps = 12/137 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M Y G GY G+Q N TIE + +A +AG +++D+ N +
Sbjct: 78 VAVMVGYCGTGYHGMQY----------NPPNPTIESALFKAFVEAGAISKDNSNDLKKNG 127
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEAN--KEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F RAARTDKGV A ++SLK+ E K+ INE LPE IR+ I+RV K F+ + C+
Sbjct: 128 FMRAARTDKGVHAGGNLISLKMIIEDPDIKQKINEKLPEGIRVWDIERVNKAFDCRKMCS 187
Query: 119 ARTYSYTCPTYAFATPQ 135
+R Y Y PTY+ P+
Sbjct: 188 SRWYEYLLPTYSLIGPK 204
>gi|365762707|gb|EHN04240.1| Pus1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 544
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 106/199 (53%), Gaps = 3/199 (1%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV--KDGLEL 198
+R++ + +A QY G HNFHNFT + +PS R++ PFV E
Sbjct: 287 YRISAAKLAKFRASTSQYLGAHNFHNFTLGKDFKEPSAIRFMKDIKVSDPFVIGDAQTEW 346
Query: 199 ITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVH 258
I++KI GQSFMLHQIRKMV +A I R + I + +G + ++P AP LGLLLE
Sbjct: 347 ISIKIHGQSFMLHQIRKMVSMATLITRCGCPVERISQAYGQQKINIPKAPALGLLLEAPV 406
Query: 259 YDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF 318
++ YN++ Q G ++++ F + EV++F+ K I + K E+ E A+ + +
Sbjct: 407 FEGYNKRLEQFG-YKAIDFSKYQDEVDKFKMKHIYDKIYKEEVDENVFNAFFSYIDSFNK 465
Query: 319 ETRAAKAALAAANGEELQE 337
T A A +G +Q+
Sbjct: 466 VTGAQGEETADKSGPAVQK 484
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 77/137 (56%), Gaps = 12/137 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M Y G GY G+Q N TIE + +A +AG +++D+ N +
Sbjct: 77 VAVMVGYCGTGYHGMQY----------NPPNPTIESALFKAFVEAGAISKDNSNDLKKNG 126
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEAN--KEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F RAARTDKGV A ++SLK+ E K+ INE LPE IR+ I+RV K F+ + C+
Sbjct: 127 FMRAARTDKGVHAGGNLISLKMIIEDPDIKQKINEKLPEGIRVWDIERVNKAFDCRKMCS 186
Query: 119 ARTYSYTCPTYAFATPQ 135
+R Y Y PTY+ P+
Sbjct: 187 SRWYEYLLPTYSLIGPK 203
>gi|323346109|gb|EGA80399.1| Pus1p [Saccharomyces cerevisiae Lalvin QA23]
gi|323351939|gb|EGA84478.1| Pus1p [Saccharomyces cerevisiae VL3]
Length = 508
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 106/199 (53%), Gaps = 3/199 (1%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV--KDGLEL 198
+R++ + +A QY G HNFHNFT + +PS R++ PFV E
Sbjct: 251 YRISAAKLAKFRASTSQYLGAHNFHNFTLGKDFKEPSAIRFMKDIKVSDPFVIGDAQTEW 310
Query: 199 ITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVH 258
I++KI GQSFMLHQIRKMV +A I R + I + +G + ++P AP LGLLLE
Sbjct: 311 ISIKIHGQSFMLHQIRKMVSMATLITRCGCPVERISQAYGQQKINIPKAPALGLLLEAPV 370
Query: 259 YDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF 318
++ YN++ Q G ++++ F + EV++F+ K I + K E+ E A+ + +
Sbjct: 371 FEGYNKRLEQFG-YKAIDFSKYQDEVDKFKMKHIYDKIYKEEVDENVFNAFFSYIDSFNK 429
Query: 319 ETRAAKAALAAANGEELQE 337
T A A +G +Q+
Sbjct: 430 VTGAQGEETADKSGPAVQK 448
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 77/137 (56%), Gaps = 12/137 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M Y G GY G+Q N TIE + +A +AG +++D+ N +
Sbjct: 41 VAVMVGYCGTGYHGMQY----------NPPNPTIESALFKAFVEAGAISKDNSNDLKKNG 90
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEAN--KEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F RAARTDKGV A ++SLK+ E K+ INE LPE IR+ I+RV K F+ + C+
Sbjct: 91 FMRAARTDKGVHAGGNLISLKMIIEDPDIKQKINEKLPEGIRVWDIERVNKAFDCRKMCS 150
Query: 119 ARTYSYTCPTYAFATPQ 135
+R Y Y PTY+ P+
Sbjct: 151 SRWYEYLLPTYSLIGPK 167
>gi|226293711|gb|EEH49131.1| tRNA pseudouridine synthase [Paracoccidioides brasiliensis Pb18]
Length = 597
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 95/166 (57%), Gaps = 1/166 (0%)
Query: 136 DTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQ-PFVKD 194
+ K +R+ ++ + + L Y GT NFHN+T ++ + S R+I SF + P + +
Sbjct: 349 EAKRAYRIPKERIDRINDALDLYVGTRNFHNYTIQKSFREASAKRHIKSFKISRDPIIIN 408
Query: 195 GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLL 254
G E ++LK+ GQSFM+HQIRKMV + + R I +T+G + +P APGLGLLL
Sbjct: 409 GTEWLSLKVHGQSFMMHQIRKMVAMVAMVVRCGCDIQRIPETYGDQKIAIPKAPGLGLLL 468
Query: 255 EQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
E+ +D YN++ + + F + +KE+ EF+ + I + + E
Sbjct: 469 ERPIFDSYNKRTVAEYGKNPIDFSKYEKEIEEFKQREIYERIFREE 514
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 62/116 (53%), Gaps = 12/116 (10%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ YSG GY G+Q +Q KTIEGD+ A AG +++ + P+
Sbjct: 136 VAVLLGYSGSGYHGMQ----------LSQTEKTIEGDLFTAFVAAGAISKANATDPKKSS 185
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK--EAINEHLPEQIRILSIKRVTKGFNSK 114
R ARTDKGV A +VSLKL E + + IN HL QIR+ I+ K +N +
Sbjct: 186 LVRCARTDKGVHAAGNVVSLKLIVEDSDVVQKINNHLSPQIRVWGIEVTNKSYNQR 241
>gi|303389002|ref|XP_003072734.1| pseudouridine synthase 2 [Encephalitozoon intestinalis ATCC 50506]
gi|303301876|gb|ADM11374.1| pseudouridine synthase 2 [Encephalitozoon intestinalis ATCC 50506]
Length = 345
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 148/332 (44%), Gaps = 56/332 (16%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
++ Y G Y GLQ N+ + T+E +I+ L + +++ + + P+ +
Sbjct: 6 GLLVGYDGSKYHGLQF----------NKELDTVEKEIIGCLLEMEVISQRNADDPKKVHI 55
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLP----EQIRILSIKRVTKGFNSKNNC 117
+ ++RTDKGV A +VS+K+ + E I+ ++I + I R+TK
Sbjct: 56 KSSSRTDKGVHAALNLVSVKIEADITPELISGLRTLLSRKEIHLYDIIRLTKSTIPSKQA 115
Query: 118 NARTYSYTCPTYAFAT--------------------------PQDTKDD---FRLTPDQF 148
R Y Y PT+ A P D D + + D
Sbjct: 116 VFRAYEYIVPTFFLAKGDFDKEVEVLRQKDGECRDGRVTRDYPSDMIDSLVGYTSSEDDL 175
Query: 149 NFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSF 208
+A+L++Y GT +FHNFT + RYI S P+V +G+E + + I GQSF
Sbjct: 176 RVFEAILQKYTGTKDFHNFTKLNS--EKGTKRYIKSVIVSDPYVNNGIEYVRVSITGQSF 233
Query: 209 MLHQIRKMVGVAMAIARGFTSKDLIEKTFGL----DQFDLPMAPGLGLLLEQVHYDLYNQ 264
+LHQIRKM+ + + R S+D +E F + + +P P LLL++ + +
Sbjct: 234 LLHQIRKMMLFGILLCR--YSRDSVESKFDMVFSKENIHVPKGPSEYLLLDKPTF--HRL 289
Query: 265 KYGQDGMHESLHFHEVDKEVNEFRHKFILPYL 296
+ G DG E + + +E E++ I P +
Sbjct: 290 RRG-DGTTEDIGVDDAARE--EYKRNAIYPRI 318
>gi|312091557|ref|XP_003147023.1| hypothetical protein LOAG_11456 [Loa loa]
Length = 236
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 85/138 (61%), Gaps = 17/138 (12%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ AY G Y G+Q + + T+EG++ +A+ K G+++ED +P F
Sbjct: 105 ALLLAYQGKKYNGMQVQ----------KDFPTVEGELFKAMAKCGYISEDDILSPVRFAF 154
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANK-------EAINEHLPEQIRILSIKRVTKGFNSK 114
QRAARTD+ VSA +Q+ S++L E ++ + +N LPE+IR++ ++R T+ F +
Sbjct: 155 QRAARTDRSVSAARQMCSMRLAPENHEYFLKTASDKLNAQLPEEIRVMGVRRATRSFKAH 214
Query: 115 NNCNARTYSYTCPTYAFA 132
NC+ RTYSYT P+YAFA
Sbjct: 215 KNCDKRTYSYTLPSYAFA 232
>gi|440470753|gb|ELQ39808.1| tRNA pseudouridine synthase 1 [Magnaporthe oryzae Y34]
gi|440481600|gb|ELQ62164.1| tRNA pseudouridine synthase 1 [Magnaporthe oryzae P131]
Length = 729
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 91/156 (58%), Gaps = 1/156 (0%)
Query: 138 KDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE-QPFVKDGL 196
K +R++ ++ LQA L +Y GTHNFHN+T +K D S R+I SF +P
Sbjct: 502 KRRYRVSQERIGKLQAALDKYVGTHNFHNYTILKKFTDSSAKRHIKSFKVNPEPIQIGET 561
Query: 197 ELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQ 256
E ++LK+ GQSFM+HQIRKMV +A+ R D I +++ + +P APGLGLLLE+
Sbjct: 562 EWVSLKVHGQSFMMHQIRKMVAMAVLTVRCGVPLDRITQSYEAKRISIPKAPGLGLLLER 621
Query: 257 VHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFI 292
++ Y+ + Q E L+F + + E+ F+ I
Sbjct: 622 PVFENYSYRAVQTLGKEPLNFDKYEDEIEAFKRAHI 657
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 10/82 (12%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ Y+G GY G+Q N KTIEGD+ A AG +++ + + P+ +
Sbjct: 123 VAVLIGYAGTGYKGMQI----------NHFEKTIEGDLFRAFVDAGAISKANASDPKKVS 172
Query: 61 FQRAARTDKGVSALKQIVSLKL 82
R ARTDKGV A ++SLKL
Sbjct: 173 LMRCARTDKGVHAASNVISLKL 194
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 91 INEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQ 135
IN HLP+QIR+ I R F+ C++R Y Y PT+A P
Sbjct: 303 INSHLPDQIRVWDILRTNNSFSCYQACDSRWYEYLMPTHALIPPH 347
>gi|389627892|ref|XP_003711599.1| tRNA pseudouridine synthase 1 [Magnaporthe oryzae 70-15]
gi|351643931|gb|EHA51792.1| tRNA pseudouridine synthase 1 [Magnaporthe oryzae 70-15]
Length = 720
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 91/156 (58%), Gaps = 1/156 (0%)
Query: 138 KDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE-QPFVKDGL 196
K +R++ ++ LQA L +Y GTHNFHN+T +K D S R+I SF +P
Sbjct: 493 KRRYRVSQERIGKLQAALDKYVGTHNFHNYTILKKFTDSSAKRHIKSFKVNPEPIQIGET 552
Query: 197 ELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQ 256
E ++LK+ GQSFM+HQIRKMV +A+ R D I +++ + +P APGLGLLLE+
Sbjct: 553 EWVSLKVHGQSFMMHQIRKMVAMAVLTVRCGVPLDRITQSYEAKRISIPKAPGLGLLLER 612
Query: 257 VHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFI 292
++ Y+ + Q E L+F + + E+ F+ I
Sbjct: 613 PVFENYSYRAVQTLGKEPLNFDKYEDEIEAFKRAHI 648
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 10/82 (12%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ Y+G GY G+Q N KTIEGD+ A AG +++ + + P+ +
Sbjct: 114 VAVLIGYAGTGYKGMQI----------NHFEKTIEGDLFRAFVDAGAISKANASDPKKVS 163
Query: 61 FQRAARTDKGVSALKQIVSLKL 82
R ARTDKGV A ++SLKL
Sbjct: 164 LMRCARTDKGVHAASNVISLKL 185
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 91 INEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQ 135
IN HLP+QIR+ I R F+ C++R Y Y PT+A P
Sbjct: 294 INSHLPDQIRVWDILRTNNSFSCYQACDSRWYEYLMPTHALIPPH 338
>gi|19075946|ref|NP_588446.1| tRNA pseudouridine synthase Lsp1 [Schizosaccharomyces pombe 972h-]
gi|74627010|sp|O94396.1|PUS1_SCHPO RecName: Full=tRNA pseudouridine synthase 1; AltName: Full=tRNA
pseudouridylate synthase 1; AltName: Full=tRNA-uridine
isomerase 1
gi|4008551|emb|CAA22472.1| tRNA pseudouridine synthase Lsp1 [Schizosaccharomyces pombe]
gi|6469502|emb|CAB61835.1| pseudouridine synthase [Schizosaccharomyces pombe]
Length = 534
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 106/212 (50%), Gaps = 5/212 (2%)
Query: 140 DFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELI 199
++R++ D+ + ++ L QY G HNFHNFT + + +R I SF PF+ E I
Sbjct: 313 NYRISADRLSVIRETLNQYVGVHNFHNFTVGQAFHQKNSNRVIRSFTASDPFMIGDTEWI 372
Query: 200 TLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHY 259
+ K+ GQSFMLHQIRKM+ +A+ + R + I+ F + ++P PG GLLLE +
Sbjct: 373 SCKVHGQSFMLHQIRKMIALAILVVRTGCPVERIQDAFKKTKINIPKGPGFGLLLESPFF 432
Query: 260 DLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELL-----A 314
YN+ + + + F + ++++ F+H I + E ++ +L +
Sbjct: 433 KGYNEHKAPENNRDPIDFTKYEQKITAFKHAHIYDKIFLEEARKQVFHCFLSFIDSYNEE 492
Query: 315 DHSFETRAAKAALAAANGEELQEVTDGEEEED 346
D S+ + +L +V +EEED
Sbjct: 493 DFSYLSDIGITEKTQEVSSKLPDVLSSDEEED 524
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 75/137 (54%), Gaps = 12/137 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A + Y G GY G+Q N KTIEGD+ +A KAG V+ + + P+ +
Sbjct: 46 VACLVGYCGSGYHGMQ----------LNPPSKTIEGDLFDAFVKAGAVSSYNADDPKKVA 95
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK--EAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
RAARTDKGV A ++SLKL E K E +NEHLP IR+ + R FN + C
Sbjct: 96 LARAARTDKGVHAAGNVISLKLIMEDEKLIEKVNEHLPPSIRLWDVIRTINSFNPRTYCE 155
Query: 119 ARTYSYTCPTYAFATPQ 135
+R Y Y PTYAF P+
Sbjct: 156 SRIYEYMVPTYAFVPPK 172
>gi|256272816|gb|EEU07786.1| Pus1p [Saccharomyces cerevisiae JAY291]
Length = 544
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 105/199 (52%), Gaps = 3/199 (1%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV--KDGLEL 198
+R+ + +A QY G HNFHNFT + +PS R++ PFV E
Sbjct: 287 YRICAAKLAKFRASTSQYLGAHNFHNFTLGKDFKEPSAIRFMKDIKVSDPFVIGDAQTEW 346
Query: 199 ITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVH 258
I++KI GQSFMLHQIRKMV +A I R + I + +G + ++P AP LGLLLE
Sbjct: 347 ISIKIHGQSFMLHQIRKMVSMATLITRCGCPVERISQAYGQQKINIPKAPALGLLLEAPV 406
Query: 259 YDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF 318
++ YN++ Q G ++++ F + EV++F+ K I + K E+ E A+ + +
Sbjct: 407 FEGYNKRLEQFG-YKAIDFSKYQDEVDKFKMKHIYDKIYKEEVDENVFNAFFSYIDSFNK 465
Query: 319 ETRAAKAALAAANGEELQE 337
T A A +G +Q+
Sbjct: 466 VTGAQGEETADKSGPAVQK 484
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 77/137 (56%), Gaps = 12/137 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M Y G GY G+Q N TIE + +A +AG +++D+ N +
Sbjct: 77 VAVMVGYCGTGYHGMQY----------NPPNPTIESALFKAFVEAGAISKDNSNDLKKNG 126
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEAN--KEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F RAARTDKGV A ++SLK+ E K+ INE LPE IR+ I+RV K F+ + C+
Sbjct: 127 FMRAARTDKGVHAGGNLISLKMIIEDPDIKQKINEKLPEGIRVWDIERVNKAFDCRKMCS 186
Query: 119 ARTYSYTCPTYAFATPQ 135
+R Y Y PTY+ P+
Sbjct: 187 SRWYEYLLPTYSLIGPK 203
>gi|430811918|emb|CCJ30624.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 443
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 90/155 (58%), Gaps = 1/155 (0%)
Query: 138 KDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLE 197
K ++R++ ++ ++ K +EG+HNFHNFT + D S R I SF P V +E
Sbjct: 278 KKEYRISAERLQLVRDAFKIFEGSHNFHNFTVGKPFNDKSVYRMIRSFTVSDPKVIQEIE 337
Query: 198 LITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQV 257
I+LK+ GQSFMLHQIRKMV + + + R T I +TF ++++P AP LGLLLE+
Sbjct: 338 WISLKVHGQSFMLHQIRKMVALIILVVRCGTPLSFISETFKSTRYNIPKAPSLGLLLEKP 397
Query: 258 HYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFI 292
+ YN++ + E + +KE+ F+ +I
Sbjct: 398 IFSGYNKR-AESMNREIIDSSLYEKEIKRFKETYI 431
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 71/136 (52%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A + Y G GY GLQ N +TIE DI EAL + G ++ + + P+
Sbjct: 58 VACLIGYCGTGYHGLQL----------NDPSRTIERDIFEALVRVGAISVMNSDDPKKSS 107
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK--EAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
RAARTD+GV A ++SLK+ E E IN LPE IR+ SI R FN K C+
Sbjct: 108 LNRAARTDRGVHAACNLISLKMIIEQQNLLETINAALPESIRMWSITRTLGSFNPKTFCD 167
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y P+Y F P
Sbjct: 168 SRIYEYLVPSYVFLPP 183
>gi|290979041|ref|XP_002672243.1| predicted protein [Naegleria gruberi]
gi|284085818|gb|EFC39499.1| predicted protein [Naegleria gruberi]
Length = 483
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 98/367 (26%), Positives = 163/367 (44%), Gaps = 63/367 (17%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALF----KAGFVTEDSF---- 53
+ F+Y+G+ + GLQ + L+ ++ + TIE +++ L+ ++ F +++
Sbjct: 102 VISFSYNGIPFNGLQIQNGENLV--KHPHLLTIEAVLLDILYGSNGESDFEQDETIIRYT 159
Query: 54 --NTPQNIQFQRAARTDKGVSALKQIVS--LKLPEEAN----------------KEAINE 93
++I+ QRA RTD+GVSA++ + + LP N + IN
Sbjct: 160 KSKNCKDIRLQRACRTDRGVSAVRNAFACVMTLPNTQNHKDTFKFNNEELCKTLNDRINN 219
Query: 94 H-------LPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPD 146
H L +QI+I +I+RV F + C R Y Y P A +++ +
Sbjct: 220 HVRIKNLNLMDQIKIFNIQRVPSRFVLHHWCQFRRYLYVLPLSALDL--SSRNIITKCNN 277
Query: 147 QFNF---------LQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLE 197
FN L LL +EG H FHNFT KP S R++ + + ++ L
Sbjct: 278 IFNLETNEQKCQKLNELLGHFEGIHLFHNFTVDAKPGSDSSRRHVKTLKIIEQNLEGDLP 337
Query: 198 LITLKIKGQSFMLHQIRKMVGVAMAIARGFTS------------KDLIEKTF-GLDQFDL 244
+ ++I G+SFMLHQIR M+G +A+ RG D E F + L
Sbjct: 338 HVVIEISGRSFMLHQIRMMIGTVIALMRGMAPNMNTTVQDNTIVNDFFENLFKAQTEVLL 397
Query: 245 PMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEK 304
PMAP GL L+ + + +N + D+ F+ ILP ++K + EK
Sbjct: 398 PMAPSEGLFLDNLDFPNFNANIVKPPFEPIKWTGTADEHAEIFKKDVILPNILKV-LKEK 456
Query: 305 PMLA-WL 310
+++ WL
Sbjct: 457 NVVSNWL 463
>gi|340959145|gb|EGS20326.1| hypothetical protein CTHT_0021520 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 658
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 90/157 (57%), Gaps = 2/157 (1%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE-QPFVKDG 195
K +R+TP + LQ L QY GT NFHN+T + D S R+I SF P
Sbjct: 433 AKRRYRVTPVRIQRLQEALNQYLGTRNFHNYTVMKAFKDASAKRHIKSFQVNPNPIQIRD 492
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
E ++LK+ GQSFM+HQIRKMV +A+ + R D+I +++G + +P APGLGL+LE
Sbjct: 493 TEWLSLKVHGQSFMMHQIRKMVAMAVMVVRCGAPLDIINQSYGPRRISIPKAPGLGLMLE 552
Query: 256 QVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFI 292
+ + YN+K G E + F + + ++ F+ + I
Sbjct: 553 RPMFTEYNKKAVTIG-REPIDFAKYEDKIKAFKDEHI 588
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 76/136 (55%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ Y+G GY G+Q N +TIEGD+ A KAG +++ + + P+
Sbjct: 130 VAVLIGYAGTGYHGIQI----------NHKERTIEGDLFAAFVKAGAISKVNADDPKKSS 179
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK--EAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A ++SLKL E E IN HLP+QIR+ I+R + GF+ C+
Sbjct: 180 LVRCARTDKGVHAAGNVLSLKLIVEDPDIVEKINSHLPDQIRVWGIQRTSNGFSCYQACD 239
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y P+Y+ P
Sbjct: 240 SRWYEYLMPSYSLLPP 255
>gi|225678874|gb|EEH17158.1| tRNA pseudouridine synthase [Paracoccidioides brasiliensis Pb03]
Length = 547
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 94/166 (56%), Gaps = 1/166 (0%)
Query: 136 DTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFD-CEQPFVKD 194
+ K +R+ ++ + + L Y GT NFHN+T ++ + S R+I SF P + +
Sbjct: 314 EAKRAYRIPKERIDRINDALDLYVGTRNFHNYTIQKSFREASAKRHIKSFKISSDPIIIN 373
Query: 195 GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLL 254
G E ++LK+ GQSFM+HQIRKMV + + R I +T+G + +P APGLGLLL
Sbjct: 374 GTEWLSLKVHGQSFMMHQIRKMVAMVAMVVRCGCDIQRIPETYGDQKIAIPKAPGLGLLL 433
Query: 255 EQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
E+ +D YN++ + + F + +KE+ EF+ + I + + E
Sbjct: 434 ERPIFDSYNKRTVAEYGKNPIDFSKYEKEIEEFKQREIYERIFREE 479
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 27 RNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLPEEA 86
R+Q KTIEGD+ A AG +++ + P+ R ARTDKGV A +VSLKL E
Sbjct: 71 RSQTEKTIEGDLFTAFVAAGAISKANATDPKKSSLVRCARTDKGVHAAGNVVSLKLIVED 130
Query: 87 NK--EAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATP 134
+ + IN HL QIR+ I+ K F+S C++R Y Y PT+ F P
Sbjct: 131 SDVVQKINNHLSPQIRVWGIEVTNKSFSSYQLCDSRVYEYLIPTHCFLPP 180
>gi|323302662|gb|EGA56468.1| Pus1p [Saccharomyces cerevisiae FostersB]
Length = 544
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 105/199 (52%), Gaps = 3/199 (1%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV--KDGLEL 198
+R+ + +A QY G HNFHNFT + +PS R++ PFV E
Sbjct: 287 YRICAAKLAKFRASTSQYLGAHNFHNFTLGKDFKEPSAIRFMKDIKVSDPFVIGDAQTEW 346
Query: 199 ITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVH 258
I++KI GQSFMLHQIRKMV +A I R + I + +G + ++P AP LGLLLE
Sbjct: 347 ISIKIHGQSFMLHQIRKMVSMATLITRCGCPVERISQAYGQQKINIPKAPALGLLLEAPV 406
Query: 259 YDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF 318
++ YN++ Q G ++++ F + EV++F+ K I + K E+ E A+ + +
Sbjct: 407 FEGYNKRLEQFG-YKAIDFSKYQDEVDKFKMKHIYDKIYKEEVDENVFNAFFSYIDSFNK 465
Query: 319 ETRAAKAALAAANGEELQE 337
T A A +G +Q+
Sbjct: 466 VTGAQGEETADKSGPAVQK 484
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 77/137 (56%), Gaps = 12/137 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M Y G GY G+Q N TIE + +A +AG +++D+ N +
Sbjct: 77 VAVMVGYCGTGYHGMQY----------NPPNPTIESALFKAFVEAGAISKDNSNDLKKNG 126
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEAN--KEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F RAARTDKGV A ++SLK+ E K+ INE LPE IR+ I+RV K F+ + C+
Sbjct: 127 FMRAARTDKGVHAGGNLISLKMIIEDPDIKQKINEKLPEGIRVWDIERVNKAFDCRKMCS 186
Query: 119 ARTYSYTCPTYAFATPQ 135
+R Y Y PTY+ P+
Sbjct: 187 SRWYEYLLPTYSLIGPK 203
>gi|295660198|ref|XP_002790656.1| tRNA pseudouridine synthase [Paracoccidioides sp. 'lutzii' Pb01]
gi|226281531|gb|EEH37097.1| tRNA pseudouridine synthase [Paracoccidioides sp. 'lutzii' Pb01]
Length = 600
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 95/166 (57%), Gaps = 1/166 (0%)
Query: 136 DTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQ-PFVKD 194
+ K +R+ ++ + + L Y GT NFHN+T ++ + S R+I SF + P + +
Sbjct: 367 EAKRAYRIPKERIDRINDALDLYVGTRNFHNYTIQKSFCEASAKRHIKSFKISRDPVIIN 426
Query: 195 GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLL 254
G E ++LK+ GQSFM+HQIRKMV + + R I +T+G + +P APGLGLLL
Sbjct: 427 GTEWLSLKVHGQSFMMHQIRKMVAMVAMVVRCGCDIQRIPETYGDQKIAIPKAPGLGLLL 486
Query: 255 EQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
E+ +D YN++ + + F + +KE+ EF+ + I + + E
Sbjct: 487 ERPIFDSYNKRTVVEYGKNPIDFSKYEKEIEEFKQREIYERIFREE 532
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 75/136 (55%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ YSG GY G+Q +Q KTIEGD+ A AG +++ + P+
Sbjct: 108 VAVLLGYSGSGYHGMQ----------LSQTEKTIEGDLFTAFVAAGAISKANATDPKKSS 157
Query: 61 FQRAARTDKGVSALKQIVSLKL-PEEAN-KEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A +VSLKL E++N + IN HL QIR+ I+ K F+S C+
Sbjct: 158 LVRCARTDKGVHAAGNVVSLKLIVEDSNVVQKINNHLSPQIRVWGIEVTNKSFSSYQLCD 217
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y PT+ F P
Sbjct: 218 SRVYEYLIPTHCFLPP 233
>gi|440634959|gb|ELR04878.1| hypothetical protein GMDG_07103 [Geomyces destructans 20631-21]
Length = 630
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 106/203 (52%), Gaps = 12/203 (5%)
Query: 142 RLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE-QPFVKDGLELIT 200
R++ + + +Q L Y GT NFHN+T ++ + S R I SF +P + E ++
Sbjct: 405 RISETRRDRVQEALSAYLGTRNFHNYTIQKSFKEDSAKRVIRSFTVNPEPVYVNDTEWLS 464
Query: 201 LKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYD 260
LK+ GQSFM+HQIRKMV + + R T + I +++ + +P APGLGLLLE+ +D
Sbjct: 465 LKVHGQSFMMHQIRKMVAMVALVVRCGTPIERINESYQNHKISIPKAPGLGLLLERPVFD 524
Query: 261 LYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADH---- 316
YN++ D E + F + + E+NEF+ + I + + E E + + DH
Sbjct: 525 SYNKRAIDDLQREKIDFTKYEAEINEFKQREIYERIYREEEKENQFHTFFHHI-DHYRSE 583
Query: 317 ------SFETRAAKAALAAANGE 333
S AAK ALA GE
Sbjct: 584 YFLWVTSTGISAAKQALALGRGE 606
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 73/136 (53%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ Y+G GY G+Q N KTIEGD+ A AG +++ + + P+
Sbjct: 116 VAVLIGYAGSGYKGMQI----------NTTEKTIEGDLFSAFVTAGAISKANADDPKKSS 165
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A ++SLKL EE E IN LP QIR+ I+R F+ C+
Sbjct: 166 LVRCARTDKGVHAAGNVISLKLIIDEEGIVEKINAALPPQIRVWGIERTNASFSCYQTCD 225
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y PT++F P
Sbjct: 226 SRWYEYLIPTHSFLPP 241
>gi|396081233|gb|AFN82851.1| pseudouridine synthase 2 [Encephalitozoon romaleae SJ-2008]
Length = 345
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 134/292 (45%), Gaps = 51/292 (17%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
++ Y G Y GLQ N+ + TIE ++E L + ++E + + P+ I
Sbjct: 6 GLLVGYDGSRYHGLQF----------NKELDTIEKRVVECLLQVEAISERNADDPKKIHI 55
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEH----LPEQIRILSIKRVTKGFNSKNNC 117
+ ++RTDKGV A ++S+K+ E ++ E I + +I R+TK
Sbjct: 56 KSSSRTDKGVHAALNLISVKIEICITSELVSRLRTLLAKEGIHLYNIVRLTKSTVPSRQA 115
Query: 118 NARTYSYTCPTY----------AFATPQ--------DTKDDF-----------RLTPDQF 148
+RTY Y PT+ A A Q DTK D+ + + D
Sbjct: 116 ISRTYEYIVPTFFLTKGDLTEEAEALKQKDGEHRIRDTKRDYPENIVESVVGHKSSEDDI 175
Query: 149 NFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSF 208
++L++Y GT +FHNFT + RYI S P+V +G+E + + I GQSF
Sbjct: 176 KAFGSILQKYIGTKDFHNFTKLNN--EKGSKRYIKSITVTDPYVSEGVEYVRISITGQSF 233
Query: 209 MLHQIRKMVGVAMAIARGFTSKDLIEKTFGL----DQFDLPMAPGLGLLLEQ 256
+LHQIRKMV A+ + + S+ ++ F + +P P LLL++
Sbjct: 234 LLHQIRKMVLFAVLLCK--YSRSSVDPKFNMVFSKQNVHVPKGPSGYLLLDK 283
>gi|255719542|ref|XP_002556051.1| KLTH0H03894p [Lachancea thermotolerans]
gi|238942017|emb|CAR30189.1| KLTH0H03894p [Lachancea thermotolerans CBS 6340]
Length = 546
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 105/199 (52%), Gaps = 3/199 (1%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV--KDGLEL 198
+R++ + +A +KQY G HNF NFT ++ DPS R++ PFV + E
Sbjct: 287 YRISESRLEAFRAAMKQYLGPHNFFNFTLGKEFKDPSAIRFMKEIKVSDPFVIGERNTEW 346
Query: 199 ITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVH 258
+++KI GQSFMLHQIRKM+ +A + R D I + + ++P AP LGLLLE
Sbjct: 347 VSIKIHGQSFMLHQIRKMISMATLVTRCSCPVDRITDAYKPQKINIPKAPALGLLLECPV 406
Query: 259 YDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF 318
Y+ YN++ + G + + F + +++EF+ K I + + E++E A+ + + S
Sbjct: 407 YEGYNKRLKEFG-YNPIDFSKYQDKMDEFKMKHIYDKIYQEEVSENVFNAFFSYIDNFSQ 465
Query: 319 ETRAAKAALAAANGEELQE 337
T A AN Q+
Sbjct: 466 VTGAQSVDDGTANPASAQK 484
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 97/205 (47%), Gaps = 35/205 (17%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M Y G GY G+Q N TIE ++ A +AG +++ + +
Sbjct: 77 VAVMIGYCGTGYHGMQ----------YNPPTPTIEAELFRAFVEAGAISQANSKDLKKSG 126
Query: 61 FQRAARTDKGVSALKQIVSLKL----PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
F RAARTDKGV A +VSLKL P+ K IN LPE IR+ I+RV K F+ +
Sbjct: 127 FMRAARTDKGVHAGGNVVSLKLIIEDPDIIAK--INSKLPEGIRVWDIERVNKAFDCRKL 184
Query: 117 CNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDP 176
C +R Y Y PTY+ P+ +N ++A K+ G P D
Sbjct: 185 CGSRWYEYLLPTYSLVGPKPGS-------ALYNDIEASKKEIPGVM----------PDDE 227
Query: 177 SCSRYIMSF--DCEQPFVKDGLELI 199
+++ SF + EQ F + LELI
Sbjct: 228 ESAKFWASFFEEIEQKFTPEELELI 252
>gi|323306932|gb|EGA60216.1| Pus1p [Saccharomyces cerevisiae FostersO]
Length = 361
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 105/199 (52%), Gaps = 3/199 (1%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV--KDGLEL 198
+R+ + +A QY G HNFHNFT + +PS R++ PFV E
Sbjct: 104 YRICAAKLAKFRASTSQYLGAHNFHNFTLGKDFKEPSAIRFMKDIKVSDPFVIGDAQTEW 163
Query: 199 ITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVH 258
I++KI GQSFMLHQIRKMV +A I R + I + +G + ++P AP LGLLLE
Sbjct: 164 ISIKIHGQSFMLHQIRKMVSMATLITRCGCPVERISQAYGQQKINIPKAPALGLLLEAPV 223
Query: 259 YDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF 318
++ YN++ Q G ++++ F + EV++F+ K I + K E+ E A+ + +
Sbjct: 224 FEGYNKRLEQFG-YKAIDFSKYQDEVDKFKMKHIYDKIYKEEVDENVFNAFFSYIDSFNK 282
Query: 319 ETRAAKAALAAANGEELQE 337
T A A +G +Q+
Sbjct: 283 VTGAQGEETADKSGPAVQK 301
>gi|254583001|ref|XP_002499232.1| ZYRO0E07106p [Zygosaccharomyces rouxii]
gi|238942806|emb|CAR30977.1| ZYRO0E07106p [Zygosaccharomyces rouxii]
Length = 537
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 103/199 (51%), Gaps = 3/199 (1%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV--KDGLEL 198
+R++ ++ ++ ++QY G HNFHNFT + + S RY+ +PFV E
Sbjct: 287 YRISQEKLKKFRSTMEQYLGAHNFHNFTLGKDFKESSAVRYMKEIKVSEPFVIGDAKTEW 346
Query: 199 ITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVH 258
+++KI GQSFMLHQIRKM+ +A + R D I + +G + ++P AP LGLLLE
Sbjct: 347 VSIKIHGQSFMLHQIRKMISMATLMTRCGCPTDRISEAYGPQKLNIPKAPALGLLLESPV 406
Query: 259 YDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF 318
+D YN + + G +E + F E++ F+ K I + K E+ E A+ + +
Sbjct: 407 FDGYNTRLEKFG-YERIDFANYQNEMDSFKMKNIYDKIYKEEVDENVFNAFFSYIDNFDR 465
Query: 319 ETRAAKAALAAANGEELQE 337
T A G +Q+
Sbjct: 466 VTGAKGEETVDKTGTSVQK 484
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 75/137 (54%), Gaps = 12/137 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M Y G GY G+Q N TIE ++ A +AG +++ + +
Sbjct: 77 VAVMIGYCGTGYHGMQ----------HNPPNLTIESELFTAFVEAGAISKANSTDLKKNG 126
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEAN--KEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F RAARTDKGV A ++SLKL E KE INE LPE IR+ IKRV K F+ + C+
Sbjct: 127 FMRAARTDKGVHAGGNLISLKLIIEDPQIKEKINEKLPEGIRVWDIKRVNKAFDCRKMCS 186
Query: 119 ARTYSYTCPTYAFATPQ 135
+R Y Y PTY+ P+
Sbjct: 187 SRWYEYLLPTYSLIGPK 203
>gi|402594750|gb|EJW88676.1| hypothetical protein WUBG_00414 [Wuchereria bancrofti]
Length = 269
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 97/177 (54%), Gaps = 25/177 (14%)
Query: 148 FNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE-----QPFVKDGL-ELITL 201
FNF Q + YE D S RYI F C + V+ G+ E ITL
Sbjct: 13 FNFAQEFSRTYE---------------DRSSMRYIHDFKCGPTQLVEDEVRGGMVEFITL 57
Query: 202 KIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDL 261
I GQSFMLHQIRKM+G+ +A RG K + TF ++ D+P APGLGL+L++VHY+
Sbjct: 58 YITGQSFMLHQIRKMIGMTVATFRGLCGKTEVANTFLSERMDVPKAPGLGLVLDKVHYER 117
Query: 262 YNQKYGQDGMHESLH--FHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADH 316
Y++ + + H++L+ E++ + +EFR +I+ + + E+ + M WL L H
Sbjct: 118 YDKWH--EKTHQALNNWGEEIETKADEFRQLYIISEIYRQELATQSMFLWLTTLIRH 172
>gi|118349886|ref|XP_001008224.1| tRNA pseudouridine synthase family protein [Tetrahymena
thermophila]
gi|89289991|gb|EAR87979.1| tRNA pseudouridine synthase family protein [Tetrahymena thermophila
SB210]
Length = 484
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 101/186 (54%), Gaps = 15/186 (8%)
Query: 90 AINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFN 149
A+N +LP IR +SIK+V++ F+ + +C R Y Y P + + Q D TP
Sbjct: 240 ALNSNLPADIRCVSIKQVSRKFDIRTHCKYRVYEYLMPLFMY---QKYDDIIAGTPMTEE 296
Query: 150 FLQ-------ALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE---QPFVKDGLELI 199
F Q L +++GTHN+HN+T + K DP C RYI+ E P ++G++ I
Sbjct: 297 FEQKTMQRVSTLADKFKGTHNYHNYTRQMKAKDPRCMRYILDMKTELITNP--QNGMKFI 354
Query: 200 TLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHY 259
+ GQSF+ HQIRKM+G+ + + + ++ +F + + +AP GL L ++ +
Sbjct: 355 RFTLVGQSFVYHQIRKMMGMICMMIQEDYPDNFMDSSFFHNVMRIWLAPAHGLFLNRMRF 414
Query: 260 DLYNQK 265
D YN+K
Sbjct: 415 DSYNKK 420
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ F Y+G GY G QS+ ++Q +KTIE + E L + ++E +
Sbjct: 13 VAIFFGYNGKGYHGSQSQ--------KDQNIKTIEKSLFEGLIDSKLISETHMGELKKAG 64
Query: 61 FQRAARTDKGVSALKQIVSLKL 82
+ R ARTDKGV AL V++KL
Sbjct: 65 WGRGARTDKGVHALCNGVNVKL 86
>gi|428165192|gb|EKX34193.1| hypothetical protein GUITHDRAFT_80757 [Guillardia theta CCMP2712]
Length = 380
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 161/346 (46%), Gaps = 74/346 (21%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGF------VTEDSFNT 55
A++ Y G Y GLQ ++G TIE ++ AL K G +T++ F
Sbjct: 22 AVLCGYVGSRYHGLQK---------HDKGPPTIEQELESALIKCGALVYESGITQNEFGL 72
Query: 56 PQN----IQFQRAARTDKGVSALKQIVSLKLPEEANKEAINE---HLPEQIRILSIKRVT 108
+++ A+RTDKGV A+ Q ++L + + E ++ I + IK+V
Sbjct: 73 KNGDLSKVKWTHASRTDKGVHAVGQCIALSMQLNFAGKTWEEQQANIKSDIVVYGIKKVP 132
Query: 109 KGF-----------------NSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFL 151
KGF +++ + R Y Y FR++ ++ +
Sbjct: 133 KGFYDDRRLDPSLGLGITRFDARRDATGRIYEYQT--------------FRISDEEIAKI 178
Query: 152 QALLKQYEGTHNFHNFTSKRKPLDPSCS--------RYIMSFDCEQPFVK-DGLELITLK 202
A+L+ YEGTH+FHNFT+ + CS R + F Q V +G+E + L+
Sbjct: 179 AAVLRIYEGTHDFHNFTADK------CSDEGPTETQRVVSRFVPGQKRVNAEGVEYLGLE 232
Query: 203 IKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGL--DQFD--LPMAPGLGLLLEQVH 258
++G SF+ HQIRKMVG+A+ R + ++ + DQ +P+AP LGL+L++V
Sbjct: 233 VEGDSFIYHQIRKMVGLAIFALRYKRDDERVQFVHDIVHDQSRHYVPLAPSLGLMLDRVL 292
Query: 259 YDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEK 304
+ N+ +G G L + +E+ EF+ + I P + + E E+
Sbjct: 293 FRKENKTHG--GFTVLLDLEDFSREMTEFKRQRIYPEIDEKEKREQ 336
>gi|401837445|gb|EJT41373.1| PUS1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 552
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV--KDGLEL 198
+R++ + +A KQY G HNFHNFT + +PS R++ + PFV + E
Sbjct: 295 YRISDAKLAKFRASTKQYLGAHNFHNFTLGKDFKEPSAIRFMKEINVSDPFVIGEAQTEW 354
Query: 199 ITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVH 258
+++KI GQSFMLHQIRKM+ +A I R I + +G + ++P AP LGLLLE
Sbjct: 355 VSVKIHGQSFMLHQIRKMISMATLITRCGCPVQRITQAYGQQKINVPKAPALGLLLEAPV 414
Query: 259 YDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITE 303
++ YN++ Q G ++++ F + EV+ F+ K I + K E+ E
Sbjct: 415 FEGYNKRLEQFG-YKAIDFSKYQDEVDTFKMKHIYDKIYKEEVDE 458
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 76/137 (55%), Gaps = 12/137 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M Y G GY G+Q N TIE + +A +AG ++ D+ N +
Sbjct: 85 VAVMVGYCGTGYHGMQY----------NPPNPTIESTLFKAFVEAGAISRDNSNDLKKNG 134
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEAN--KEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F RAARTDKGV A ++SLK+ E KE IN+ LP+ IR+ I+RV K F+ + C+
Sbjct: 135 FMRAARTDKGVHAGGNLISLKMIIEDPDIKEKINDKLPQGIRVWDIERVNKAFDCRKMCS 194
Query: 119 ARTYSYTCPTYAFATPQ 135
+R Y Y PTY+ P+
Sbjct: 195 SRWYEYLLPTYSLIGPK 211
>gi|365758114|gb|EHM99973.1| Pus1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 552
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV--KDGLEL 198
+R++ + +A +QY G HNFHNFT R +PS R++ + PFV + E
Sbjct: 295 YRISDAKLAKFRASTEQYLGAHNFHNFTLGRDFKEPSAIRFMKEINVSDPFVIGEAQTEW 354
Query: 199 ITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVH 258
+++KI GQSFMLHQIRKM+ +A I R I + +G + ++P AP LGLLLE
Sbjct: 355 VSVKIHGQSFMLHQIRKMISMATLITRCGCPVQRITQAYGQQKINVPKAPALGLLLEAPV 414
Query: 259 YDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITE 303
++ YN++ Q G ++++ F + EV+ F+ K I + K E+ E
Sbjct: 415 FEGYNKRLEQFG-YKAIDFSKYQDEVDTFKMKHIYDKIYKEEVDE 458
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 76/137 (55%), Gaps = 12/137 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M Y G GY G+Q N TIE + +A +AG ++ D+ N +
Sbjct: 85 VAVMVGYCGTGYHGMQY----------NPPNPTIESTLFKAFVEAGAISRDNSNDLKKNG 134
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEAN--KEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F RAARTDKGV A ++SLK+ E KE IN+ LP+ IR+ I+RV K F+ + C+
Sbjct: 135 FMRAARTDKGVHAGGNLISLKMIIEDPDIKEKINDKLPQGIRVWDIERVNKAFDCRKMCS 194
Query: 119 ARTYSYTCPTYAFATPQ 135
+R Y Y PTY+ P+
Sbjct: 195 SRWYEYLLPTYSLIGPK 211
>gi|171685180|ref|XP_001907531.1| hypothetical protein [Podospora anserina S mat+]
gi|170942551|emb|CAP68202.1| unnamed protein product [Podospora anserina S mat+]
Length = 615
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 100/169 (59%), Gaps = 4/169 (2%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDG- 195
K +R++P + LQ L Y GTHN+HN+T + D S R+I SF+ ++ G
Sbjct: 390 AKRRYRISPARIERLQQALNLYLGTHNYHNYTVMKSFKDASAKRHIKSFEANTTPIQIGD 449
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
E ++LK+ GQSFM+HQIRKMV +A+ + R DLI++++G + +P APGLGL+LE
Sbjct: 450 TEWLSLKVHGQSFMMHQIRKMVAMAVMVVRCGAPLDLIKESYGPRRISIPKAPGLGLMLE 509
Query: 256 QVHYDLYNQK-YGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITE 303
+ + YN++ G D E + F + + ++ +F+ + I + + E E
Sbjct: 510 RPMFTEYNKRAAGFD--KEPIDFSKYEDQIIKFKDEHIYRRMFEVEEKE 556
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 76/137 (55%), Gaps = 12/137 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ Y+G GY G+Q N KTIEGDI A AG +++ + + P+
Sbjct: 122 VAVLIGYAGTGYHGIQI----------NHKEKTIEGDIFAAFVAAGAISKANADDPKKSS 171
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A ++SLKL +E E IN HLPEQIRI I+R F+ +C+
Sbjct: 172 LVRCARTDKGVHAAGNVLSLKLIVEDEDIVEKINSHLPEQIRIWGIQRTVNAFSCYQSCD 231
Query: 119 ARTYSYTCPTYAFATPQ 135
+R Y Y P+Y+ PQ
Sbjct: 232 SRWYEYLMPSYSLLPPQ 248
>gi|239606367|gb|EEQ83354.1| tRNA pseudouridine synthase [Ajellomyces dermatitidis ER-3]
Length = 596
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 93/166 (56%), Gaps = 1/166 (0%)
Query: 136 DTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQ-PFVKD 194
D K +R+ ++ + + L Y GT NFHN+T ++ D S R I SF + P + +
Sbjct: 377 DAKRAYRIPKERMDRINDALGMYVGTRNFHNYTIQKSFRDASAKRLIKSFKISRDPLIIN 436
Query: 195 GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLL 254
G E ++LK+ GQSFM+HQIRKMV + + R I +T+ + +P APGLGLLL
Sbjct: 437 GTEWLSLKVHGQSFMMHQIRKMVAMVALVVRCGCDIQRIPETYEDHKIAIPKAPGLGLLL 496
Query: 255 EQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
E+ +D YN++ + + F + +KE+ EF+ + I + + E
Sbjct: 497 ERPIFDSYNKRTVVEYGKNPIDFSKYEKEIEEFKQREIYERIFREE 542
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 73/136 (53%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M YSG GY G+Q + KTIEGD+ A AG +++ + P+
Sbjct: 123 VAVMLGYSGSGYKGMQ----------LSPTEKTIEGDLFTAFVAAGAISKANATDPKKSS 172
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK--EAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A +VSLKL E + + INE L QIR+ I+ K F+S + C+
Sbjct: 173 LVRCARTDKGVHAAGNVVSLKLIVEDSDIVQKINEQLSPQIRVWGIEITNKSFSSYHLCD 232
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y PT+ F P
Sbjct: 233 SRIYEYLIPTHCFLPP 248
>gi|327353057|gb|EGE81914.1| tRNA pseudouridine synthase [Ajellomyces dermatitidis ATCC 18188]
Length = 610
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 93/166 (56%), Gaps = 1/166 (0%)
Query: 136 DTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQ-PFVKD 194
D K +R+ ++ + + L Y GT NFHN+T ++ D S R I SF + P + +
Sbjct: 377 DAKRAYRIPKERMDRINDALGMYVGTRNFHNYTIQKSFRDASAKRLIKSFKISRDPLIIN 436
Query: 195 GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLL 254
G E ++LK+ GQSFM+HQIRKMV + + R I +T+ + +P APGLGLLL
Sbjct: 437 GTEWLSLKVHGQSFMMHQIRKMVAMVALVVRCGCDIQRIPETYEDHKIAIPKAPGLGLLL 496
Query: 255 EQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
E+ +D YN++ + + F + +KE+ EF+ + I + + E
Sbjct: 497 ERPIFDSYNKRTVVEYGKNPIDFSKYEKEIEEFKQREIYERIFREE 542
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 73/136 (53%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M YSG GY G+Q + KTIEGD+ A AG +++ + P+
Sbjct: 123 VAVMLGYSGSGYKGMQ----------LSPTEKTIEGDLFTAFVAAGAISKANATDPKKSS 172
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK--EAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A +VSLKL E + + INE L QIR+ I+ K F+S + C+
Sbjct: 173 LVRCARTDKGVHAAGNVVSLKLIVEDSDIVQKINEQLSPQIRVWGIEITNKSFSSYHLCD 232
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y PT+ F P
Sbjct: 233 SRIYEYLIPTHCFLPP 248
>gi|261190138|ref|XP_002621479.1| tRNA pseudouridine synthase [Ajellomyces dermatitidis SLH14081]
gi|239591307|gb|EEQ73888.1| tRNA pseudouridine synthase [Ajellomyces dermatitidis SLH14081]
Length = 605
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 93/166 (56%), Gaps = 1/166 (0%)
Query: 136 DTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQ-PFVKD 194
D K +R+ ++ + + L Y GT NFHN+T ++ D S R I SF + P + +
Sbjct: 372 DAKRAYRIPKERMDRINDALGMYVGTRNFHNYTIQKSFRDASAKRLIKSFKISRDPLIIN 431
Query: 195 GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLL 254
G E ++LK+ GQSFM+HQIRKMV + + R I +T+ + +P APGLGLLL
Sbjct: 432 GTEWLSLKVHGQSFMMHQIRKMVAMVALVVRCGCDIQRIPETYEDHKIAIPKAPGLGLLL 491
Query: 255 EQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
E+ +D YN++ + + F + +KE+ EF+ + I + + E
Sbjct: 492 ERPIFDSYNKRTVVEYGKNPIDFSKYEKEIEEFKQREIYERIFREE 537
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 70/136 (51%), Gaps = 17/136 (12%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M YSG+ R+ KTIEGD+ A AG +++ + P+
Sbjct: 123 VAVMLGYSGI---------------YRSPTEKTIEGDLFTAFVAAGAISKANATDPKKSS 167
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK--EAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A +VSLKL E + + INE L QIR+ I+ K F+S + C+
Sbjct: 168 LVRCARTDKGVHAAGNVVSLKLIVEDSDIVQKINEQLSPQIRVWGIEITNKSFSSYHLCD 227
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y PT+ F P
Sbjct: 228 SRIYEYLIPTHCFLPP 243
>gi|345569276|gb|EGX52144.1| hypothetical protein AOL_s00043g534 [Arthrobotrys oligospora ATCC
24927]
Length = 745
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 89/157 (56%), Gaps = 3/157 (1%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGL 196
+K FR+ + ++ + YEG H+FHNFT ++ D S RYI +F P + D
Sbjct: 515 SKRSFRIPSARLERIRKAFELYEGNHSFHNFTIQKTFRDASAKRYIKTFKVSDPIIIDDS 574
Query: 197 ELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQ 256
E ++LK+ GQSFM+HQIRKMVG+ M R + I + +G +P AP LGLLL+
Sbjct: 575 EWLSLKVHGQSFMMHQIRKMVGMVMLTIRYGCPIERITEAYGRLVIPIPKAPALGLLLDH 634
Query: 257 VHYDLYNQKYGQ-DGMHESLHFHEVDKEVNEFRHKFI 292
++ YN+K Q + H S H+ +++ EF+ K I
Sbjct: 635 PLFETYNKKADQCNRSHLSFEAHK--EKIQEFKQKNI 669
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 83/169 (49%), Gaps = 15/169 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ Y G GY G+Q N KTIEGD+ A AG +++ + + P+
Sbjct: 236 VAVLIGYCGTGYKGMQ----------LNPPTKTIEGDLFAAFVAAGAISKANSDDPKKSS 285
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK--EAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A ++SLKL E+ E IN L QIR+ I T GF+ C+
Sbjct: 286 LVRCARTDKGVHAAGNVISLKLIIESPTVIEDINAQLVPQIRVWDIIPTTNGFSCYQFCD 345
Query: 119 ARTYSYTCPTYAFATPQDT---KDDFRLTPDQFNFLQALLKQYEGTHNF 164
+R Y Y PTY F P T ++ N L+A ++YE + F
Sbjct: 346 SRVYEYLVPTYCFLPPHPTSYMSKRVAKVAEEENDLEAWRERYEDSLGF 394
>gi|402074306|gb|EJT69835.1| tRNA pseudouridine synthase 1 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 694
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 96/166 (57%), Gaps = 2/166 (1%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDC-EQPFVKDG 195
K +R++ ++ + LQ L Y GT+NFHN+T +K D S R+I SF QP
Sbjct: 467 AKKRYRVSEERLSQLQGALDCYIGTNNFHNYTILKKFSDSSAKRHIKSFVVNRQPIQIGD 526
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIAR-GFTSKDLIEKTFGLDQFDLPMAPGLGLLL 254
+ ++LK+ GQSFM+HQIRKMV +A+ + R G D I+ ++G + +P APGLGLLL
Sbjct: 527 TQWLSLKVHGQSFMMHQIRKMVAMAVLLVRSGAPPADRIKASYGPKRISIPKAPGLGLLL 586
Query: 255 EQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
E+ ++ Y+++ Q L+F + + E+ F+ K I + E
Sbjct: 587 ERPVFENYSKRAVQSLDRPPLNFDKFEAEIQSFKDKHIYKRMWDVE 632
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 76/181 (41%), Gaps = 57/181 (31%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ Y+G GY G+Q N KTIEGD+ A +AG +++ + + P+ +
Sbjct: 131 VAVLIGYAGTGYKGMQI----------NHQEKTIEGDLFRAFVEAGAISKANASDPRKVS 180
Query: 61 FQRAARTDKGVSALKQIVSLKL-------------------------------------- 82
R ARTDKGV A +VSLK+
Sbjct: 181 LMRCARTDKGVHAASNVVSLKVILDEPEAAKTAEASTEEGEGTKTNSAETAGDDQNLEVD 240
Query: 83 ---------PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFAT 133
EEA IN+HLP+QIRI I R F+S C++R Y Y P++
Sbjct: 241 KAGEAGDMTAEEALTARINKHLPDQIRIWGIIRTNNAFSSHQACDSRWYEYLMPSHVLLP 300
Query: 134 P 134
P
Sbjct: 301 P 301
>gi|400599046|gb|EJP66750.1| tRNA pseudouridine synthase A [Beauveria bassiana ARSEF 2860]
Length = 598
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 116/225 (51%), Gaps = 8/225 (3%)
Query: 136 DTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE-QPFVKD 194
+ K +R+TP + LQ L +Y GT NFHN+T ++ DPS R I SF P + +
Sbjct: 371 NAKRRYRITPARRERLQEALDKYTGTRNFHNYTVQKAYGDPSAKRTIKSFKVNPTPVLIN 430
Query: 195 GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLL 254
E ++LK+ GQSFM+HQIRKMVG+ + R T + +++++ + +P APGLGLLL
Sbjct: 431 NTEWLSLKVHGQSFMMHQIRKMVGLVSLMVRCGTPLERMDESYQNHKMAIPKAPGLGLLL 490
Query: 255 EQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELL- 313
E + +N++ + + + F + ++ F+ K I + E E A+ +
Sbjct: 491 EHPVFTNFNRRATDNLGRDEIDFEKYADKMGAFKDKEIYQRIFDVEEKENTFHAFFNQID 550
Query: 314 ---ADHSFETRAAKAALAAANGEELQEVTDGEE---EEDEEDRGG 352
A+H A +A EE + D ++ +EDEED G
Sbjct: 551 QFKANHFLWLTAGGLKVAEIAKEESGKEEDVDKQLGDEDEEDPDG 595
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 72/136 (52%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M YSG GY G+Q N TIE D+ +A KAG +++ + + P+
Sbjct: 99 VAVMIGYSGTGYKGMQV----------NGDEPTIERDLFQAFIKAGAISKANADDPRKSS 148
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A ++SLKL +E + IN LPEQIRI I+R FN C+
Sbjct: 149 LARCARTDKGVHAAGNVISLKLIIEDEDIVDKINAALPEQIRIWGIQRTNNSFNCYQYCD 208
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y P+Y P
Sbjct: 209 SRFYEYLLPSYCLLPP 224
>gi|367029149|ref|XP_003663858.1| hypothetical protein MYCTH_2306070 [Myceliophthora thermophila ATCC
42464]
gi|347011128|gb|AEO58613.1| hypothetical protein MYCTH_2306070 [Myceliophthora thermophila ATCC
42464]
Length = 627
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 89/157 (56%), Gaps = 2/157 (1%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE-QPFVKDG 195
K +R++P + LQ L Y GT NFHN+T + DPS R+I SF P
Sbjct: 402 AKRRYRVSPVRIQRLQQALDLYLGTRNFHNYTIMKSFKDPSAKRHIKSFQVNPTPITIRD 461
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
E ++LK+ GQSFM+HQIRKMV +A+ + R +I +++G + +P APGLGL+LE
Sbjct: 462 TEWLSLKVHGQSFMMHQIRKMVAMAVMVVRCGAPLSIITESYGPRRISIPKAPGLGLMLE 521
Query: 256 QVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFI 292
+ + YN+K G E + F + + ++ F+ + I
Sbjct: 522 RPMFTEYNKKAASLG-KEPIDFSKWEDKIAAFKDEHI 557
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 76/136 (55%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M Y+G GY G+Q N KTIEGDI A AG +++ + + P+
Sbjct: 111 VAVMIGYAGTGYHGIQI----------NHKDKTIEGDIFAAFVAAGAISKANADDPKKSS 160
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A ++SLKL +E + IN HLP+QIR+ I+R + GF+ C+
Sbjct: 161 LVRCARTDKGVHAAGNVLSLKLIVEDEDIVDKINAHLPDQIRVWGIQRTSNGFSCYQACD 220
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y P+Y+ P
Sbjct: 221 SRWYEYLMPSYSLLPP 236
>gi|452843249|gb|EME45184.1| hypothetical protein DOTSEDRAFT_87604 [Dothistroma septosporum
NZE10]
Length = 679
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 94/167 (56%), Gaps = 7/167 (4%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSF--DCEQPFVKDG--- 195
+R+ + +Q L +Y GT N+HN+T ++ DPS R+I SF + + + DG
Sbjct: 474 YRIPQQRIARIQDALNRYVGTRNYHNYTIQKTFKDPSAKRHIKSFQVNTKSVLIGDGPED 533
Query: 196 --LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLL 253
E +++K+ GQSFM+HQIRKM+G+ + R D ++K+F ++ +P PGLGLL
Sbjct: 534 EKTEWLSMKVHGQSFMMHQIRKMIGMVTILVRAGGQLDQMDKSFTEARYSIPKVPGLGLL 593
Query: 254 LEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
LE+ +D YN + +L F + D ++ +F+ + I + + E
Sbjct: 594 LERPVFDSYNTQQATKHDRPTLEFSKYDDKLQDFKEREIYQRIFREE 640
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 74/136 (54%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ YSG GY G+Q + KTIEGD+ +A KAG +++ + P+
Sbjct: 140 VAVLIGYSGTGYKGMQI----------SGTEKTIEGDLFQAFIKAGAISKANAEDPKKSS 189
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK--EAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A ++SLKL E + + INE L QIR+ I+R F+ C+
Sbjct: 190 LVRCARTDKGVHAAGNMISLKLIVEDDDIVDKINEALSPQIRVWGIERAIGSFSCYQACD 249
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y P+YAF P
Sbjct: 250 SRWYEYLIPSYAFLPP 265
>gi|169806638|ref|XP_001828063.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348]
gi|161779191|gb|EDQ31215.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348]
Length = 347
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 139/303 (45%), Gaps = 54/303 (17%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A ++ Y G+ Y G+Q N + T+E +++ L K +++E + + Q I+
Sbjct: 5 IAFLWGYCGITYSGIQF----------NNEINTLEKKLIDILCKLQYISEKNAESAQKIK 54
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIR-----ILSIKRVTKGFNSKN 115
+ A+RTDKGVSA+ + K+ +E E IN+ L + + +I RV K F
Sbjct: 55 MKSASRTDKGVSAIFNVTICKINQEL-TENINQILKNEFSKAGFILYNIARVPKTFIPYR 113
Query: 116 NCNARTYSYTCP--------------------TYAFATPQDTKDDFRL---------TPD 146
+ +R Y Y P Y + + D F D
Sbjct: 114 SARSREYKYFIPIGVLNKNIAKSQIDIMQSSENYNISIEKFKHDTFDWLNKSTSNTQIID 173
Query: 147 QFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQ 206
+ NF+ L + G H+FHNFT++ + + RYI +G+E + + + G
Sbjct: 174 KLNFI---LNLFHGNHDFHNFTTQN--VQGTTIRYIKHIYANSIKKINGIEYVEVFLHGD 228
Query: 207 SFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGL----DQFDLPMAPGLGLLLEQVHYDLY 262
SF++HQIRKM+ A+ + R + +IE+ + + + + +P AP L L +H+D +
Sbjct: 229 SFIMHQIRKMIAFAIFMCRNYDDNTIIEQYYNIIFSKNNYYIPKAPSEYLYLYNIHFDDF 288
Query: 263 NQK 265
N++
Sbjct: 289 NKR 291
>gi|361129503|gb|EHL01409.1| putative tRNA pseudouridine synthase 1 [Glarea lozoyensis 74030]
Length = 747
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 93/164 (56%), Gaps = 1/164 (0%)
Query: 138 KDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDC-EQPFVKDGL 196
K +R++ + ++ L Y GT NFHN+T ++ DPS R I SF + P +
Sbjct: 522 KKAYRISEYRRQRVEEALNTYVGTCNFHNYTIQKSFSDPSAKRVIRSFKVGKDPVYINDT 581
Query: 197 ELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQ 256
E ++LK+ GQSFM+HQIRKMV +A + R ++ ++I ++G +P AP LGLLLE+
Sbjct: 582 EWLSLKVHGQSFMMHQIRKMVAMASMVVRCGSTAEVIRDSYGRAPISIPKAPSLGLLLER 641
Query: 257 VHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
++ YN + E + F + KE++EF+ + I + + E
Sbjct: 642 PVFNSYNTQAVSKFNREKIDFDKYQKEMDEFKQREIYDRIFREE 685
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 74/136 (54%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ Y+G GY G+Q N KTIEGD+ +A AG +++ + + P+
Sbjct: 132 VAVLIGYAGSGYKGMQI----------NGTEKTIEGDLFKAFVAAGAISKANADDPKKST 181
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK--EAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A ++SLKL E + + IN LP QIR+ +R F+ +C+
Sbjct: 182 LVRCARTDKGVHAAGNVISLKLIVEEDDIVQKINAALPPQIRVWGYERTNGSFSCYQSCD 241
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y PTY+F P
Sbjct: 242 SRWYEYLIPTYSFLPP 257
>gi|326430199|gb|EGD75769.1| hypothetical protein PTSG_07888 [Salpingoeca sp. ATCC 50818]
Length = 173
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 80/131 (61%), Gaps = 2/131 (1%)
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
+E I +++KGQSFMLHQIRKM+G+A+A+ARGF + + TF + D+P PGLGL L+
Sbjct: 1 MEWIRIQVKGQSFMLHQIRKMIGMAVAVARGFAVMEDVYSTFNHESVDVPRIPGLGLYLD 60
Query: 256 QVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLAD 315
V +D YN+K+ Q H L + E D+E+ F+ I+ +++ E + + WL L
Sbjct: 61 SVFFDFYNKKFQQS--HPPLSWEEWDEEIEAFKADQIVSEILRQEKKHEIIKQWLSNLYH 118
Query: 316 HSFETRAAKAA 326
H +E R A
Sbjct: 119 HKYEARCRHAG 129
>gi|156836479|ref|XP_001642300.1| hypothetical protein Kpol_228p5 [Vanderwaltozyma polyspora DSM
70294]
gi|156112794|gb|EDO14442.1| hypothetical protein Kpol_228p5 [Vanderwaltozyma polyspora DSM
70294]
Length = 562
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 98/184 (53%), Gaps = 3/184 (1%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDG--LEL 198
+R++ ++ + + +Y G HNFHNFT + DPS R++ PFV E
Sbjct: 289 YRISDEKLTKFRNAMNEYLGAHNFHNFTLGKDFKDPSAIRFMKEIRVSDPFVIGAAKTEW 348
Query: 199 ITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVH 258
I++KI GQSFMLHQIRKM+ +A + R I + +G + ++P AP LGLLLE
Sbjct: 349 ISIKIHGQSFMLHQIRKMISMATLVTRCGCPVSRISQAYGPQKINIPKAPALGLLLESPV 408
Query: 259 YDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF 318
++ YN++ + G + + F + KE++ F+ K I + K E+ E A+ + +
Sbjct: 409 FEGYNKRLEKFG-YNPIDFSKFQKEMDAFKMKHIYDKIYKEEVDENVFNAFFSYIDSFNM 467
Query: 319 ETRA 322
T A
Sbjct: 468 VTGA 471
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 75/137 (54%), Gaps = 12/137 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M Y G GY G+Q N TIE + +A +AG +++ + N +
Sbjct: 79 VAVMVGYCGTGYHGMQY----------NPPNPTIEDALFKAFVQAGAISKANSNDLKKNG 128
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEAN--KEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F RAARTDKGV A ++SLK+ E K+ INE LP I++ +I+RV K F+ + C
Sbjct: 129 FMRAARTDKGVHAGGNLISLKMIIEDPEIKQKINEELPNGIKVWNIERVNKAFDCRKMCG 188
Query: 119 ARTYSYTCPTYAFATPQ 135
+R Y Y PTY+ P+
Sbjct: 189 SRWYEYLLPTYSLIGPK 205
>gi|170586436|ref|XP_001897985.1| tRNA pseudouridine synthase A [Brugia malayi]
gi|158594380|gb|EDP32964.1| tRNA pseudouridine synthase A, putative [Brugia malayi]
Length = 260
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 90/150 (60%), Gaps = 10/150 (6%)
Query: 175 DPSCSRYIMSFDCE-----QPFVKDGL-ELITLKIKGQSFMLHQIRKMVGVAMAIARGFT 228
D S RYI F C + V+ G+ E ITL I GQSFMLHQIRKM+G+ +A RG
Sbjct: 20 DRSSMRYIHDFKCGPTQLVEDEVRGGMVEFITLYITGQSFMLHQIRKMIGMTVATFRGLC 79
Query: 229 SKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHF--HEVDKEVNE 286
K + TF ++ D+P APGLGL+L++VHY+ Y++ + + H++L+ E++ + +E
Sbjct: 80 GKTEVANTFLSERMDVPKAPGLGLVLDKVHYERYDKWH--EKTHQTLNNWGEEIETKADE 137
Query: 287 FRHKFILPYLVKTEITEKPMLAWLELLADH 316
FR +I+ + + E+ + M WL L H
Sbjct: 138 FRQFYIISEIYRQELATQSMFLWLTTLIRH 167
>gi|453082482|gb|EMF10529.1| pseudouridine synthase [Mycosphaerella populorum SO2202]
Length = 687
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 103/212 (48%), Gaps = 26/212 (12%)
Query: 96 PEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALL 155
PE R+L I+ TK TY A K +R+ + +Q L
Sbjct: 439 PEMERVLRIRAATKLLRE--------------TYMNA-----KRKYRIPQKRIERIQNAL 479
Query: 156 KQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE-QP-FVKDG-----LELITLKIKGQSF 208
+Y GT N+HNFT ++ DPS R+I SF +P + DG E ++LK+ GQSF
Sbjct: 480 NKYIGTKNYHNFTIQKTFKDPSVKRHIKSFKANPKPILIGDGPDEEKTEWLSLKVHGQSF 539
Query: 209 MLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQ 268
M+HQIRKMVG+ + R ++ +F +F +P PGLGLLLE+ +D YN
Sbjct: 540 MMHQIRKMVGMITLLVRAGADLKTMDASFTETRFSIPKVPGLGLLLERPVFDSYNNLQAS 599
Query: 269 DGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
E L F + + E+ F+ + I + + E
Sbjct: 600 KHGREKLDFSKFETELEAFKEREIYQRIFREE 631
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 73/136 (53%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ YSG GY G+Q I + KTIEGD+ +A +AG +++ + P+
Sbjct: 135 VAVLIGYSGTGYKGMQ-------ISAKE---KTIEGDLFQAFIRAGAISKANAEDPKKSS 184
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK--EAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A ++SLKL E E IN L QIR+ I+R F+ C+
Sbjct: 185 LVRCARTDKGVHAAGNMISLKLIVEDTDIVEKINAELSPQIRVWGIERTIGSFSCYQACD 244
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y P+YAF P
Sbjct: 245 SRWYEYLMPSYAFLPP 260
>gi|209876690|ref|XP_002139787.1| tRNA pseudouridine synthase family protein [Cryptosporidium muris
RN66]
gi|209555393|gb|EEA05438.1| tRNA pseudouridine synthase family protein [Cryptosporidium muris
RN66]
Length = 497
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 88/144 (61%), Gaps = 16/144 (11%)
Query: 154 LLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQI 213
+L QY GTHNFHNFTS+ + + S R+I + + VK+ L+L+ + IKGQSF+LHQI
Sbjct: 338 ILNQYTGTHNFHNFTSRLEYNNASAWRHIDKINVNRLPVKNKLKLLKITIKGQSFLLHQI 397
Query: 214 RKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHE 273
RK++ +A+ I RG I FG ++ + +AP GLLL++V+YD YNQ+ +
Sbjct: 398 RKIIALAIEIYRGSAPLSSINLCFGSRKYSIHLAPSQGLLLDRVYYDHYNQR-----ISS 452
Query: 274 SLHFHEVDKEVNEFRHKFILPYLV 297
S++ ++V+ +PYL+
Sbjct: 453 SVNLNDVN-----------IPYLI 465
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 31/100 (31%)
Query: 2 AMMFAYSGVGYFGLQ-------SKYLFFLIFCRNQGMKTIEGDIMEALFKAG-------- 46
M Y+G Y+G+Q KY+ +TIE + EAL K+
Sbjct: 11 CMAIGYNGTNYYGMQIQSNTNNCKYI-----------ETIESKLEEALIKSSMLVIRKSK 59
Query: 47 --FVTEDSFNTPQ---NIQFQRAARTDKGVSALKQIVSLK 81
+V FN+ +I + R RTDKGV ++ QIVS +
Sbjct: 60 NEYVNLKEFNSSSFLTSINWTRVGRTDKGVHSVCQIVSFR 99
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 89 EAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDF 141
+ +N LP+ IRI ++ RV+K F+++ +C R Y Y P Y + K D
Sbjct: 180 KKLNLILPQTIRIFTLIRVSKNFDARKDCFRRQYEYIMPEYVLYPVKFIKQDL 232
>gi|403221454|dbj|BAM39587.1| pseudouridylate synthase [Theileria orientalis strain Shintoku]
Length = 500
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 132/285 (46%), Gaps = 49/285 (17%)
Query: 78 VSLKLP--EEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYA----F 131
V +K P EE + +N LPE IR I+RVTKGF+++ C+ R Y Y P + F
Sbjct: 207 VEIKEPSKEELFIKTLNAVLPEDIRCFKIQRVTKGFDARIMCSKRKYEYLLPVWVLCRKF 266
Query: 132 ATPQDT-------------------------KDDFRLTPDQFNF---------LQALLKQ 157
P + K + L +Q + L+ +LKQ
Sbjct: 267 EFPNEEHEGIYKRLESYMEENMNNKENVKAYKSEEALYEEQGKYVEVEEYLEKLRQILKQ 326
Query: 158 YEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMV 217
YEGT +FHNFT K++ + RYI ++ + +G++L+ + I+GQSF+ +QIRKM+
Sbjct: 327 YEGTKDFHNFTVKQRLETKNTQRYIEKIKVKEEEI-EGMKLVRITIQGQSFLYNQIRKMI 385
Query: 218 GVA----MAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHE 273
+A +A+A K ++K+ L ++ P GL+L YD YN
Sbjct: 386 CLALQEYLAVAPKNAVKYALKKSATL---NINTVPSEGLILHHPCYDTYNATRCSMANIP 442
Query: 274 SLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF 318
+ + ++ EV F+ ++I VK I K WLE + + F
Sbjct: 443 YIEYKDIKPEVETFKRQYIYAE-VKKSICCKIWEGWLETVKTYPF 486
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A+ F Y G Y G Q + + +KT+EG + L K G + E N +Q
Sbjct: 72 ALAFGYIGTNYHGYQKQVEYKTGIM--DKVKTVEGTVENCLIKIGAIDESLRNMNHKLQM 129
Query: 62 QRAARTDKGVSA 73
+++RTDKGV A
Sbjct: 130 SKSSRTDKGVHA 141
>gi|428673414|gb|EKX74327.1| tRNA pseudouridine synthase, putative [Babesia equi]
Length = 468
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/324 (26%), Positives = 142/324 (43%), Gaps = 64/324 (19%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A+ F Y G Y G Q + + ++TIEG + AL + G + E N P +Q
Sbjct: 89 AIAFGYLGTRYHGYQKQVEYGT--GDMNKVETIEGTMESALVEIGAINEVYRNLPYKLQL 146
Query: 62 QRAARTDKGVSALKQIVS--LKLPE----EANKE-----AINEHLPEQIRILSIKRVTKG 110
+++RTDKGV A ++ ++PE KE +N+ LP IR I RVTKG
Sbjct: 147 SKSSRTDKGVHAGCTYIAGRFEIPELEEEVGTKEEFFIRKLNDALPNDIRCFQIVRVTKG 206
Query: 111 FNSKNNCNARTYSYTCP------TYAFATPQ----------------DTKDDFRLTP--D 146
F+++ C+ R Y Y P Y F + + +KD +L+
Sbjct: 207 FDARTMCSKRKYEYIIPEKILLKRYKFGSDKYKELHNNLSSLFSQYDKSKDPIKLSKVEG 266
Query: 147 QFN--------------FLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYI---------- 182
++N ++ ++ Y GTH+F NFT ++K + RYI
Sbjct: 267 EYNMDHGFYEDSTLDIELIKEIMDMYVGTHDFQNFTVRQKVQGSTTQRYIHKTKVNIFTL 326
Query: 183 --MSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE-KTFGL 239
+ ++ + +G ++ + I GQSF+ +QIRKM+ +A+ K I F
Sbjct: 327 SNIFHQIKKDVIGNGQNVVRITIVGQSFLYNQIRKMISMAIETYLNLAPKSTIAFSLFNN 386
Query: 240 DQFDLPMAPGLGLLLEQVHYDLYN 263
+ +AP GL+L ++D YN
Sbjct: 387 RILNTNIAPSEGLVLHHPYFDSYN 410
>gi|356573442|ref|XP_003554869.1| PREDICTED: LOW QUALITY PROTEIN: tRNA pseudouridine synthase A,
mitochondrial-like [Glycine max]
Length = 462
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 77/133 (57%), Gaps = 12/133 (9%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ FAY GVGY G+Q +N G KTIEGD+ E L+ +G V E P+
Sbjct: 56 VAIFFAYCGVGYQGMQ----------KNPGAKTIEGDLEEVLYVSGAVPEQDRGVPKRYD 105
Query: 61 FQRAARTDKGVSALKQIVSLK--LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ R+ARTDKGVSA+ Q+VS + + + +N +LP QIRI KRVT FN+K C+
Sbjct: 106 WARSARTDKGVSAVGQVVSGRFYIDPPGLVDRLNSNLPSQIRIFGYKRVTASFNAKKFCD 165
Query: 119 ARTYSYTCPTYAF 131
R Y Y P +A
Sbjct: 166 RRRYVYLIPVFAL 178
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 241 QFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
++P P +GL L++ + YNQK+ HE L +K+ EF+ K+I ++ TE
Sbjct: 331 NINVPTXPEVGLYLDECFFTSYNQKWKD---HEELSMKAYEKDAEEFKMKYIYSHIASTE 387
Query: 301 ITEKPMLAWLELLADHSF 318
E + WL L ++
Sbjct: 388 QKEGTVALWLHSLNHRNY 405
>gi|59634318|gb|AAW88358.1| pseudouridine synthase 1 [Schistosoma japonicum]
Length = 170
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 76/117 (64%)
Query: 209 MLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQ 268
MLHQ+RKM+G+ + I RG+ ++D+ + F ++ D+P APGLGL+L QV + YN+KY
Sbjct: 1 MLHQVRKMIGLVLGILRGYATEDVFDIVFCKERVDIPKAPGLGLMLNQVDFSCYNKKYQN 60
Query: 269 DGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSFETRAAKA 325
DG+H+ L + + + + NEF +++ ++ + E +K ML WL L H++ R + +
Sbjct: 61 DGIHQPLDWSKYEDQRNEFMMQYVYQHIDQIETEDKSMLQWLATLNCHTYSFRDSSS 117
>gi|300706061|ref|XP_002995341.1| hypothetical protein NCER_101809 [Nosema ceranae BRL01]
gi|239604377|gb|EEQ81670.1| hypothetical protein NCER_101809 [Nosema ceranae BRL01]
Length = 344
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 127/287 (44%), Gaps = 52/287 (18%)
Query: 6 AYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAA 65
Y G GY GLQ N TIE I E LF ++ + P I + ++
Sbjct: 10 GYIGTGYSGLQ----------LNGDYNTIEKAISECLFSCSAISSQNAKDPSKIHLKSSS 59
Query: 66 RTDKGVSALKQIVSLKLPEEANK---EAINEHL-PEQIRILSIKRVTKGFNSKNNCNART 121
RTDKGV A ++S K+ + + + E L + I + I R+TK F N +RT
Sbjct: 60 RTDKGVHAAFNLISCKIECQITDVFFQKLKECLFSKNIYLYKILRLTKSFIPTNLTISRT 119
Query: 122 YSYTCPTYAFA-----------TPQDTKDDFRLTPDQFN------------------FLQ 152
Y Y PTY A +D D ++T ++N +
Sbjct: 120 YEYILPTYFLAKSNFSAECSDLIAKDLNRD-KMTKREYNEKDIEQIFGYLADKDDIKYFC 178
Query: 153 ALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQ 212
+ ++ GT NFHNFT+ RYI + + +V D +E I + I+GQSF+LHQ
Sbjct: 179 DIFTKFLGTKNFHNFTTLSNHKGKQ--RYIKNIEFSNAYVIDDIEYIKITIEGQSFLLHQ 236
Query: 213 IRKMVGVAMAIAR----GFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
IRKM+ ++ + R F++ + EK F + +P P LLL+
Sbjct: 237 IRKMIYFSVLLCRYKRNEFST--IFEKVFSDEYLHVPKGPSQYLLLD 281
>gi|312090526|ref|XP_003146648.1| tRNA pseudouridine synthase A [Loa loa]
Length = 238
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 86/147 (58%), Gaps = 10/147 (6%)
Query: 180 RYIMSFDCE-----QPFVKDGL-ELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLI 233
RYI F C + V+ G+ E I+L + GQSFMLHQIRKM+G+ +A RG K +
Sbjct: 2 RYIHDFKCGPTQLVEDKVRGGMVEFISLYVTGQSFMLHQIRKMIGMTVATFRGLCGKTEL 61
Query: 234 EKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLH--FHEVDKEVNEFRHKF 291
E TF ++ D+P APGLGL+L++VHY+ Y++ Y + H+ L+ E++ +EFR +
Sbjct: 62 ENTFRSERMDVPKAPGLGLVLDKVHYERYDRWY--EKTHQKLNNWGDEIEARADEFRKLY 119
Query: 292 ILPYLVKTEITEKPMLAWLELLADHSF 318
I+ + + E+ M WL L H
Sbjct: 120 IIAEIYRQELATHSMFLWLTTLLRHDI 146
>gi|67608685|ref|XP_666896.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54657966|gb|EAL36665.1| hypothetical protein Chro.80065 [Cryptosporidium hominis]
Length = 501
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 81/145 (55%), Gaps = 3/145 (2%)
Query: 124 YTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIM 183
Y Y D K F L+ + Q++L +Y GTH+FHNFTSK D + R+I
Sbjct: 306 YRLVNYKIEDYLDPKRRFSLSDEDLKRFQSILNEYIGTHSFHNFTSKSSYEDSTSWRHIE 365
Query: 184 SFDC---EQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD 240
Q +K + LI + IKGQSF+LHQIRKMV +A+ I RG + I+ F D
Sbjct: 366 EIKVVKVNQNEIKGDINLIKIIIKGQSFLLHQIRKMVALAIEIFRGTAPSNGIQLCFLPD 425
Query: 241 QFDLPMAPGLGLLLEQVHYDLYNQK 265
+F + +AP GLLL++V Y+ YN K
Sbjct: 426 KFSIHLAPSQGLLLDRVFYNSYNTK 450
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 17/98 (17%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRN----QGMKTIEGDIMEALFKAG--FVT----ED 51
M F Y G Y G+Q I RN + ++TIEG++ + L K G FV+ +D
Sbjct: 11 CMSFGYDGSDYHGMQ-------IQMRNNKKVEELRTIEGEMEDCLEKLGMFFVSNEQNDD 63
Query: 52 SFNTPQNIQFQRAARTDKGVSALKQIVSLKLPEEANKE 89
+ I++ R RTDKGV ++ Q+VS + + N E
Sbjct: 64 QGGLLKKIKWSRVGRTDKGVHSVCQVVSFRAKIKINGE 101
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
+I++ I RVTK F+++ +C+ R Y Y P + DDF+ ++ N +A L +
Sbjct: 180 KIKVFKIFRVTKNFDARIDCSRRQYEYLMPEFLLKHVNINNDDFK---EELN--RASLSR 234
Query: 158 Y-EGTHNFHNFTSKRK 172
+ EG + N + KRK
Sbjct: 235 FEEGLNELKNASKKRK 250
>gi|66356668|ref|XP_625512.1| Pus1p-like type II pseudousynthas TruA [Cryptosporidium parvum Iowa
II]
gi|46226500|gb|EAK87494.1| Pus1p-like type II pseudousynthas TruA [Cryptosporidium parvum Iowa
II]
Length = 501
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 81/145 (55%), Gaps = 3/145 (2%)
Query: 124 YTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIM 183
Y Y D K F L+ + Q++L +Y GTH+FHNFTSK D + R+I
Sbjct: 306 YRLVNYKIEDYLDPKRRFSLSDEDLKRFQSILNEYIGTHSFHNFTSKSSYEDSTSWRHIE 365
Query: 184 SFDC---EQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD 240
Q +K + LI + IKGQSF+LHQIRKMV +A+ I RG + I+ F D
Sbjct: 366 EIKVVKVSQNEIKGEINLIKIIIKGQSFLLHQIRKMVALAIEIFRGTAPSNGIQLCFLPD 425
Query: 241 QFDLPMAPGLGLLLEQVHYDLYNQK 265
+F + +AP GLLL++V Y+ YN K
Sbjct: 426 KFSIHLAPSQGLLLDRVFYNSYNTK 450
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 17/98 (17%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRN----QGMKTIEGDIMEALFKAGFV------TED 51
M F Y G Y G+Q I RN + ++TIEG++ + L K G +D
Sbjct: 11 CMSFGYDGSDYHGMQ-------IQMRNNKKVEELRTIEGEMEDCLEKLGMFFLSNEQNDD 63
Query: 52 SFNTPQNIQFQRAARTDKGVSALKQIVSLKLPEEANKE 89
+ I++ R RTDKGV ++ Q+VS + + N E
Sbjct: 64 QGGLLKKIKWSRVGRTDKGVHSVCQVVSFRAKIKINDE 101
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 91 INEHLPE-QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFN 149
+NE L +I++ I RVTK F+++ +C+ R Y Y P + DDF+ ++ N
Sbjct: 172 LNELLESTKIKVFKIFRVTKNFDARTDCSRRQYEYLMPEFLLKHVNINNDDFK---EELN 228
Query: 150 FLQALLKQYE-GTHNFHNFTSKRK 172
+A L ++E G + N + KRK
Sbjct: 229 --KASLSRFEKGLNELKNASKKRK 250
>gi|262039471|ref|ZP_06012775.1| tRNA pseudouridine synthase A [Leptotrichia goodfellowii F0264]
gi|261746538|gb|EEY34073.1| tRNA pseudouridine synthase A [Leptotrichia goodfellowii F0264]
Length = 249
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 136/271 (50%), Gaps = 40/271 (14%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ M++ Y G ++G Q R + KT++G+I + + K N Q I
Sbjct: 7 IKMVYQYDGSKFYGFQ----------RQKNKKTVQGEIEKVILK---------NFSQKIN 47
Query: 61 FQRAARTDKGVSALKQI----VSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ RTDKGV AL Q+ + K+P EA K IN++L +I+ILS++ + + FNS+ +
Sbjct: 48 MISSGRTDKGVHALGQVSNFFIDEKIPLEAIKRQINKNLYGEIKILSVEEIKREFNSRFD 107
Query: 117 CNARTYSYTCPTYAFATPQDT------KDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSK 170
+RTY Y TP ++ K+D + +QF Q +++ ++G ++F +F K
Sbjct: 108 AKSRTYLYIMKKEEEITPFESNYITGIKNDINI--EQF---QKIMEIFKGKYDFSSFMKK 162
Query: 171 RKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSK 230
K + + R I + CE ++ + I ++I G SF+ IR M+G AMAI G +
Sbjct: 163 DKAIRNTM-REIYNIKCE---YEEREKKIYVEICGSSFLKTMIRIMIGSAMAIYFGKERE 218
Query: 231 DLIEKTFGLDQFDLP--MAPGLGLLLEQVHY 259
D I+ D P +AP GL L +V Y
Sbjct: 219 DYIKMRLENPDADKPKILAPSEGLYLYRVDY 249
>gi|116208668|ref|XP_001230143.1| hypothetical protein CHGG_03627 [Chaetomium globosum CBS 148.51]
gi|88184224|gb|EAQ91692.1| hypothetical protein CHGG_03627 [Chaetomium globosum CBS 148.51]
Length = 584
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 76/137 (55%), Gaps = 12/137 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ Y+G GY G+Q N KTIEGD+ A AG +++ + + P+
Sbjct: 110 VAVLIGYAGTGYHGIQI----------NHKEKTIEGDLFSAFVAAGAISKANADDPKKSS 159
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A ++SLKL +E INEHLPEQIRI I R + GF++ C
Sbjct: 160 LVRCARTDKGVHAAGNVLSLKLIVEDEDIVTKINEHLPEQIRIWGIHRTSNGFSAYQACE 219
Query: 119 ARTYSYTCPTYAFATPQ 135
+R Y Y P+Y+ PQ
Sbjct: 220 SRWYEYLMPSYSLLPPQ 236
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 84/157 (53%), Gaps = 2/157 (1%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQ-PFVKDG 195
K +R TP + LQ L Y GT N+HN+T + D S R+I SF P
Sbjct: 359 AKRRYRATPARIEKLQQALNSYLGTRNYHNYTVMKSHKDASAMRHIKSFQVNTTPITIGD 418
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
E ++L + GQSFM+HQIRKMV +A+ + R I +++G + +P APGLGL+LE
Sbjct: 419 TEWLSLMVHGQSFMMHQIRKMVAMAVMVVRCGAPLSTISESYGPRRISIPKAPGLGLMLE 478
Query: 256 QVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFI 292
+ + YN K G E + F + + ++ F+ + I
Sbjct: 479 RPMFTGYNSKAAGLG-KEPIDFAKWEAKIEAFKDQHI 514
>gi|398404858|ref|XP_003853895.1| hypothetical protein MYCGRDRAFT_39250 [Zymoseptoria tritici IPO323]
gi|339473778|gb|EGP88871.1| hypothetical protein MYCGRDRAFT_39250 [Zymoseptoria tritici IPO323]
Length = 538
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 91/163 (55%), Gaps = 8/163 (4%)
Query: 138 KDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE-QPFV---- 192
K +R+ + +Q L QY GT N+HN+T ++ DPS R+I SF +P +
Sbjct: 316 KRHYRIPTRRIERIQDALSQYVGTRNYHNYTIQKTYKDPSAKRHIKSFTVNPKPILIGEG 375
Query: 193 --KDGLELITLKIKGQSFMLHQIRKMVGVAMAIAR-GFTSKDLIEKTFGLDQFDLPMAPG 249
++ E ++LK+ GQSFM+HQIRKMVG+ + R G + + +F +++ +P PG
Sbjct: 376 PDEEKSEWLSLKVHGQSFMMHQIRKMVGMVTLLVRSGSNIRPTMLDSFSENRYSIPKVPG 435
Query: 250 LGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFI 292
LGLLLE+ +D YN E L F + DK++ F+ + I
Sbjct: 436 LGLLLERPVFDTYNNLSATKHGREKLIFSKYDKDLEAFKEREI 478
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 74/136 (54%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M YSG GY G+Q + KTIEGD+ EA +AG +++ + P+
Sbjct: 76 VAVMIGYSGTGYKGMQI----------SGSEKTIEGDLFEAFVRAGAISKANAEDPKKSS 125
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F R ARTDKGV A ++SLKL +E E IN L QIR+ I+R F+ C+
Sbjct: 126 FVRCARTDKGVHAAGNMISLKLIVEDENIVEKINAELSSQIRVWGIERTIGSFSCYQACD 185
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y P++AF P
Sbjct: 186 SRWYEYLIPSHAFLPP 201
>gi|328772887|gb|EGF82924.1| hypothetical protein BATDEDRAFT_33866 [Batrachochytrium
dendrobatidis JAM81]
Length = 580
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 94/184 (51%), Gaps = 6/184 (3%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELIT 200
+R++ Q L +L + GTHN+HN+ DP C I++ D + +G+E +
Sbjct: 366 YRMSQSQKVSLCNILSLFNGTHNWHNYIPGADQSDPRCYIRIINIDVRDTELHEGMEWVR 425
Query: 201 LKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYD 260
+KI+ +F +Q+R+M+ + + + R T ++ ++G + ++P AP L L+L++ HY+
Sbjct: 426 IKIQAPAFARYQVRRMMALVIMVLRTNTPHSVVANSYGFAKMEIPEAPALSLVLDEPHYN 485
Query: 261 LYNQKYGQDG------MHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLA 314
YN + Q + + +HF E EV +FRH I + TE WL L
Sbjct: 486 NYNVEVLQSAKDQGKMLRQPVHFGESIHEVEDFRHNAIHEAIYATERELMEFETWLRSLD 545
Query: 315 DHSF 318
+SF
Sbjct: 546 SYSF 549
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 71/140 (50%), Gaps = 25/140 (17%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+++ Y+G G+ L+ R +G TIEG ++ L ++ D T NI
Sbjct: 25 LAILYGYNGTGFDALE----------RTKGEVTIEGTLLAVLASL--LSADGKATFTNIS 72
Query: 61 FQRAARTDKGVSALKQIVSLK--------LPEEANKEAINEHLPEQIRILSIKRVTKGFN 112
RA+ T+ G A KQ+VS + LP EA+N+ LP +R+ I V F+
Sbjct: 73 --RASTTEAGEHASKQVVSFETHAPTPIILPA---VEAVNKLLPSSMRVFRIIPVASDFS 127
Query: 113 SKNNCNARTYSYTCPTYAFA 132
++ C ARTY + PTYAF+
Sbjct: 128 ARRTCEARTYEFLIPTYAFS 147
>gi|320588025|gb|EFX00500.1| tRNA pseudouridine synthase [Grosmannia clavigera kw1407]
Length = 899
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 88/165 (53%), Gaps = 2/165 (1%)
Query: 138 KDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE-QPFVKDGL 196
K +R+TP + LQ L YEGT NFHN+T ++ D S R+I SF +P
Sbjct: 671 KRRYRITPTRLARLQEALSMYEGTSNFHNYTVQKSFKDASAKRHIKSFVVNPEPIQMRDT 730
Query: 197 ELITLKIKGQSFMLHQIRKMVGVAMAIAR-GFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
+ ++L++ GQSFM+HQIRKMV +A+ + R G ++ ++G + +P APG GLLLE
Sbjct: 731 QWLSLRVHGQSFMMHQIRKMVAMAVMLTRCGTAPGPAMKLSYGPRRISIPRAPGFGLLLE 790
Query: 256 QVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
+ +D YN + + E + F F+ + I + E
Sbjct: 791 RPVFDSYNLRAQANFGKEPIDFDSYGAAFRTFKDEQIYARIWDVE 835
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 74/136 (54%), Gaps = 12/136 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M Y+G GY G+Q N KTIEGD+ A AG + + + + P+
Sbjct: 419 VAVMIGYAGTGYRGMQI----------NHDEKTIEGDLFAAFVAAGAIAKTNADDPKKSS 468
Query: 61 FQRAARTDKGVSALKQIVSLKL-PEEAN-KEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A ++SLKL E+A+ E IN HLP QIR+ I+R F+ C+
Sbjct: 469 LVRCARTDKGVHAAGNVISLKLIVEDADVVERINAHLPPQIRVWGIQRTINSFSCYQACD 528
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y P+YA P
Sbjct: 529 SRWYEYLLPSYALLPP 544
>gi|328850113|gb|EGF99282.1| hypothetical protein MELLADRAFT_45767 [Melampsora larici-populina
98AG31]
Length = 615
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 138 KDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDG-- 195
K +R++ L+ +++++GTHNFHNFT ++ D S R I PFV G
Sbjct: 347 KSSYRISLPMLQRLKQSVQKFKGTHNFHNFTVGKEFKDRSAIRIIREMTVSDPFVVGGES 406
Query: 196 -----LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGL 250
E I++K GQSFMLHQIRKM+G+ + + R T LI + +G + +P APGL
Sbjct: 407 EGDPATEWISVKFYGQSFMLHQIRKMIGLIILLCRTRTPCTLIPELYGPVRVRIPKAPGL 466
Query: 251 GLLLEQVHYDLYNQK 265
GL+L H+D YN++
Sbjct: 467 GLILHHPHFDGYNKR 481
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 81/163 (49%), Gaps = 38/163 (23%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ Y G GY G Q N GMKTIEG++ +A KAG V+ED+ P +
Sbjct: 130 VAVLLGYYGKGYQGSQV----------NPGMKTIEGEVFKAFVKAGCVSEDNSAHPNKVG 179
Query: 61 FQRAARTDKGVSALKQIVSLKL-------------------------PEEAN---KEAIN 92
QRAARTD V A ++ LKL PE + + IN
Sbjct: 180 LQRAARTDANVHAGCNLICLKLILDPPSLKESSDITAESSETKTCGDPEHHSLPLMKHIN 239
Query: 93 EHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQ 135
LPE+IR+ ++RV F+++ C++RTY Y+ PTY F P+
Sbjct: 240 SFLPEEIRLWGLERVQNSFHARTLCDSRTYEYSLPTYLFLPPK 282
>gi|452985072|gb|EME84829.1| hypothetical protein MYCFIDRAFT_135121 [Pseudocercospora fijiensis
CIRAD86]
Length = 592
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 101/204 (49%), Gaps = 26/204 (12%)
Query: 96 PEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALL 155
PE RIL ++ TK +N A Y PT + +Q L
Sbjct: 353 PETDRILRLRAATKLL--RNAYVAAKRRYRIPT-----------------QRVERIQNAL 393
Query: 156 KQYEGTHNFHNFTSKRKPLDPSCSRYIMSF--DCEQPFVKDG-----LELITLKIKGQSF 208
+Y GT N+HN+T ++ DPS R+I SF + + + DG E ++LK+ GQSF
Sbjct: 394 NKYLGTKNYHNYTIQKTFKDPSVKRHIKSFLANPKPILIGDGPEEEKTEWLSLKVHGQSF 453
Query: 209 MLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQ 268
M+HQIRKMVG+ + R + + +E +F ++ +P PGLGLLLE+ +D YN +
Sbjct: 454 MMHQIRKMVGMVTLLVRSGGNLETMESSFTAARYSIPKVPGLGLLLERPVFDSYNNFQAE 513
Query: 269 DGMHESLHFHEVDKEVNEFRHKFI 292
L F + + E+ F+ + I
Sbjct: 514 KHDRPKLDFSKYETELEAFKEREI 537
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 72/137 (52%), Gaps = 12/137 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ YSG GY G+Q + KTIEGD+ A KAG +++ + P+
Sbjct: 133 VAVLIGYSGTGYKGMQI----------SGTEKTIEGDLFHAFIKAGAISKANAEDPKKTG 182
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK--EAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A +VSLKL E + + IN L QIR+ I+R F+ C+
Sbjct: 183 LVRCARTDKGVHAAGNMVSLKLIVEDDDIVQKINAELSAQIRVWGIERTIGSFSCYQACD 242
Query: 119 ARTYSYTCPTYAFATPQ 135
+R Y Y P+YAF P
Sbjct: 243 SRWYEYLIPSYAFLPPH 259
>gi|42572123|ref|NP_974152.1| pseudouridine synthase-like protein [Arabidopsis thaliana]
gi|332197678|gb|AEE35799.1| pseudouridine synthase-like protein [Arabidopsis thaliana]
Length = 356
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 79/135 (58%), Gaps = 16/135 (11%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++FA+ GVGY G+Q +N G KTIEG++ EALF AG V E P+
Sbjct: 24 VAIIFAFCGVGYQGMQ----------KNPGAKTIEGELEEALFHAGAVPESIRGKPKLYD 73
Query: 61 FQRAARTDKGVSALKQIVSLKLPEE----ANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
F R+ARTDKGVSA+ Q+VS + + N+ +N +LP QIRI K VT F+SK
Sbjct: 74 FARSARTDKGVSAVGQVVSGRFIVDPLGFVNR--LNSNLPNQIRIFGYKHVTPSFSSKKF 131
Query: 117 CNARTYSYTCPTYAF 131
C+ R Y Y P +A
Sbjct: 132 CDRRRYVYLLPVFAL 146
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 57/84 (67%)
Query: 154 LLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQI 213
+L Y G++NFHNFT++ K DP+ +R I+SF DG++ I ++ G+SFMLHQI
Sbjct: 271 ILSCYVGSYNFHNFTTRTKADDPTANRQIISFTANTVINLDGIDFIKCEVLGKSFMLHQI 330
Query: 214 RKMVGVAMAIARGFTSKDLIEKTF 237
RKM+G+A+AI R S+ LI+ F
Sbjct: 331 RKMMGLAVAIMRNCASESLIQSAF 354
>gi|301105176|ref|XP_002901672.1| ubiquitin fusion degradation protein, putative [Phytophthora
infestans T30-4]
gi|262100676|gb|EEY58728.1| ubiquitin fusion degradation protein, putative [Phytophthora
infestans T30-4]
Length = 840
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 89/178 (50%), Gaps = 26/178 (14%)
Query: 9 GVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTD 68
G GY GLQ N +KTIE DI A+F+AG + E +F I + R++RTD
Sbjct: 2 GTGYHGLQ----------LNDNVKTIEDDIRNAIFQAGAMRESNFEDLGKIDWARSSRTD 51
Query: 69 KGVSALKQIVSLK-LPEEAN------------KEAINEHLPEQIRILSIKRVTKGFNSKN 115
KGV A + S K L +E N KEA+N LPE IR+ S RV+K F+++
Sbjct: 52 KGVHAGCIVFSGKLLIDEENKVDPISGRVHELKEALNASLPENIRVFSCTRVSKRFSARK 111
Query: 116 NCNARTYSYTCPTYAFATPQDTKD--DFRLTPDQFNFLQALLKQYEGTHNFHNFTSKR 171
NC R Y Y P D DF F +A L++YEG H+FHNFT R
Sbjct: 112 NCVLREYEYFMPLSFLRGSLIGSDGEDFDTDEAVAEFCRA-LRRYEGVHDFHNFTRSR 168
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 21/151 (13%)
Query: 177 SCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIA-RGFTSKDLIEK 235
SCS ++ C +P ++ + I GQ+F+L+QIR MVG A+A+A +G + +
Sbjct: 240 SCSGSLVPDFCGEPHLR-------IHIVGQAFLLNQIRCMVGGALAVATKGMSRVEFDAA 292
Query: 236 TFGLDQFDLPMAPGLGLLLEQVHY-------DLYNQ------KYGQDGMHESLHFHEVDK 282
+P+AP GL+L + LY K +D +H L + D+
Sbjct: 293 LLTNRIVRVPIAPAEGLVLLSSSFGGKSHTVSLYEDPNTVLAKERKDVVHRVLLNRKEDE 352
Query: 283 EVNEFRHKFILPYLVKTEITEKPMLAWLELL 313
E+ +FR + I + + ++ M W L
Sbjct: 353 EMTKFRDEVIYKEIASSWDMDEKMDRWRAYL 383
>gi|302754550|ref|XP_002960699.1| hypothetical protein SELMODRAFT_63437 [Selaginella moellendorffii]
gi|300171638|gb|EFJ38238.1| hypothetical protein SELMODRAFT_63437 [Selaginella moellendorffii]
Length = 403
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 95/183 (51%), Gaps = 16/183 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+AM Y G GY G LF + N + IE D+ +A++KAG + + ++ +
Sbjct: 5 VAMWIGYVGTGYKGNHCS-LFLELSALNSSLTAIEADLDKAIYKAGGILDSNYGHHMKVG 63
Query: 61 FQRAARTDKGVSALKQIVSLK--LPEEANK---------EAINEHLPEQIRILSIKRVTK 109
+ R++RTDKGV +L ++SLK LP +A + + IN HLP+ IR+ + V+K
Sbjct: 64 WARSSRTDKGVHSLATVISLKMELPIDAWRDDPGGIEIADMINRHLPQCIRVFGVVPVSK 123
Query: 110 GFNSKNNCNARTYSYTCPTYAFATPQDTKD-DFRLTPDQFNFLQALLKQYEGTHNFHNFT 168
F + C+ R+Y Y P Q + + +QF LQ LK +EG H FHN+T
Sbjct: 124 TFRPRMACSERSYDYFLPALCVGINQRVSTCEIKQLLEQFR-LQ--LKLFEGEHPFHNYT 180
Query: 169 SKR 171
+R
Sbjct: 181 IRR 183
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 199 ITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGL-DQFDLPMAPGLGLLL 254
+ + + G SFM+HQIRKM+G A+A+ R D+I+ + + LP+AP GL L
Sbjct: 270 LRVSVTGASFMVHQIRKMIGTAVAVTRKLLPPDIIQMSLCRHSRIVLPIAPCEGLTL 326
>gi|429964914|gb|ELA46912.1| tRNA pseudouridine synthase A [Vavraia culicis 'floridensis']
Length = 405
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 97/395 (24%), Positives = 157/395 (39%), Gaps = 109/395 (27%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ AY+G + GLQ + G+ TIE ++ L + + + P+ +
Sbjct: 50 VAILVAYTGTPFHGLQYQ---------RTGVPTIEQTLINGLVEMNLIKRINSTDPKKMH 100
Query: 61 FQRAARTDKGVSALKQIVSLKL-------------------------------------- 82
QRA RTDKGV A ++ + L
Sbjct: 101 LQRACRTDKGVHAAFNVIVVNLERGCYDEFIRRFDRLSAGTIGVVNDERNDERNGERNGE 160
Query: 83 ------------PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYA 130
P+E + + L I + + RV K FN KN + R Y+Y P +
Sbjct: 161 RNGERNGDNMDIPKENSISNTSLALAHHIHVYDVVRVPKSFNPKNRTDYRIYNYLVPKHM 220
Query: 131 FATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFT---SKRKPLDPSCSRYIMSFDC 187
++T L ++ Y GT ++HNFT +KR +R I S +
Sbjct: 221 LKVDKET-------------LSSIFDLYVGTKDYHNFTLVSNKR-----GSARLIKSIEV 262
Query: 188 EQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKD--------LIEKTFGL 239
+ E +KI GQSFM+HQIRKM+G + I + KD +++K F L
Sbjct: 263 RE--AAGTSEWYEIKISGQSFMMHQIRKMIGFVLLIV-NYHGKDRGTAPALEIVQKIFAL 319
Query: 240 ----DQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPY 295
++P AP L L+ + YN++Y + H +L EVNE + + I
Sbjct: 320 AFSPRLLNIPKAPAHPLFLDTPVFHNYNERYDR---HSNL-------EVNEKKKEIIKTK 369
Query: 296 LVKTEITEKPML----AWLELLADHSFETRAAKAA 326
++ +EI + + W E + H +E K A
Sbjct: 370 MIYSEIMTQGCVDMFKEWQECIEAHIYEYEYLKEA 404
>gi|302803171|ref|XP_002983339.1| hypothetical protein SELMODRAFT_117791 [Selaginella moellendorffii]
gi|300149024|gb|EFJ15681.1| hypothetical protein SELMODRAFT_117791 [Selaginella moellendorffii]
Length = 437
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 95/183 (51%), Gaps = 16/183 (8%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+AM Y G GY G LF + N + IE D+ +A++KAG + + ++ +
Sbjct: 32 VAMWIGYVGTGYKGNHCS-LFLELSALNSSLTAIEADLDKAIYKAGGILDSNYGHHMKVG 90
Query: 61 FQRAARTDKGVSALKQIVSLK--LPEEANK---------EAINEHLPEQIRILSIKRVTK 109
+ R++RTDKGV +L ++SLK LP +A + + IN HLP+ IR+ + V+K
Sbjct: 91 WARSSRTDKGVHSLATVISLKMELPIDAWRDDPGGIEIADRINRHLPQCIRVFGVVPVSK 150
Query: 110 GFNSKNNCNARTYSYTCPTYAFATPQDTKD-DFRLTPDQFNFLQALLKQYEGTHNFHNFT 168
F + C+ R+Y Y P Q + + +QF LQ LK +EG H FHN+T
Sbjct: 151 TFRPRMACSERSYDYFLPALCVGINQRVSTCEIKQLLEQFR-LQ--LKLFEGEHPFHNYT 207
Query: 169 SKR 171
+R
Sbjct: 208 IRR 210
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 199 ITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGL-DQFDLPMAPGLGLLL 254
+ + + G SFM+HQIRKM+G A+A+ R D+I+ + + LP+AP GL L
Sbjct: 296 LRVSVTGASFMVHQIRKMIGTAVAVTRKLLPPDIIQMSLCRHSRIVLPIAPCEGLTL 352
>gi|452823736|gb|EME30744.1| tRNA pseudouridine synthase A [Galdieria sulphuraria]
Length = 641
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 95/205 (46%), Gaps = 50/205 (24%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ + Y G Y+GLQ R +G+KTIE +I AL+ G++ E +F Q I
Sbjct: 111 ICLYIGYVGTDYYGLQVN--------RQEGIKTIEEEIERALYSCGWIGEQNFRRVQKIS 162
Query: 61 FQRAARTDKGVSALKQIVSLK--LPE---------EANK--------------------- 88
+ RA+RTDKGV A +++LK L E E K
Sbjct: 163 WSRASRTDKGVHACGNVIALKALLKEQWFELDSNFEKTKQNTRTKNNSDELAFSSLGSLK 222
Query: 89 ----EAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLT 144
E +N +LP+ IRIL ++ VTK F++++ CN R Y Y P A + +
Sbjct: 223 KDVLEQLNRNLPDSIRILGVQPVTKHFDARSRCNFRAYEYLMPLEAIPGASENIE----- 277
Query: 145 PDQFNFLQALLKQYEGTHNFHNFTS 169
L+ +L ++GTH FHNF+S
Sbjct: 278 -QAICRLEEILSLFKGTHRFHNFSS 301
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 65/127 (51%), Gaps = 6/127 (4%)
Query: 180 RYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE-KTFG 238
R + D E P G + L+ GQSF+LHQIRKM+G A+++ G S + ++ +G
Sbjct: 398 RSVYIADIEGPLEIQGRNYVLLRFAGQSFILHQIRKMIGGALSVMYGRLSMEALKVALYG 457
Query: 239 LDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVK 298
Q + +AP L+L V D +N K + +E + + + +++K +LP + +
Sbjct: 458 PFQVPISLAPSEPLML--VLCDFWNSKRER---YELIPSPVTQEAMKHYKYKILLPRVAE 512
Query: 299 TEITEKP 305
++P
Sbjct: 513 LLEQKRP 519
>gi|224126927|ref|XP_002319961.1| predicted protein [Populus trichocarpa]
gi|222858337|gb|EEE95884.1| predicted protein [Populus trichocarpa]
Length = 445
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 92/185 (49%), Gaps = 24/185 (12%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ Y G Y GLQ ++ + TIEG++ A+++AG + E ++ I
Sbjct: 34 VALRVGYVGTDYRGLQKQH-------DQHSLLTIEGELERAIYEAGGIRESNYGNLNKIS 86
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKE---------AINEHLPEQIRILSIKRVTK 109
+ R++RTDKGV +L +++K+ PE A K+ +N +LP+ IR+LSI K
Sbjct: 87 WARSSRTDKGVHSLATTITMKMEIPENAWKDDLYGMVLAKHVNSYLPDSIRVLSILPAQK 146
Query: 110 GFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTP--DQFNFLQALLKQYEGTHNFHNF 167
F+ + C+ R YSY P K F + D + +L +EG H FHN+
Sbjct: 147 SFDPRRECDIRKYSYLLPAEVIG----IKSHFSMAEIDDHISDFNNILNAFEGDHPFHNY 202
Query: 168 TSKRK 172
T + K
Sbjct: 203 TVRSK 207
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 63/125 (50%), Gaps = 9/125 (7%)
Query: 180 RYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGL 239
R I C + G + + + I G+SFMLHQIRKMVG A+A+ R +DLI L
Sbjct: 287 RKIFRCSCGKLEKSLGFDFVEISIWGESFMLHQIRKMVGTAVAVKRKVLPRDLI--MLSL 344
Query: 240 DQFD---LPMAPGLGLLLEQVHYDLYNQKYGQDG---MHESLHFHEVDKEVNEFRHKFIL 293
+F LP+AP L+L + L +K G+ M + E+ + VNEF +L
Sbjct: 345 TKFSRIVLPLAPSEVLILRGNDFSL-RKKSGEGKRPEMETMVESEEILRAVNEFYSTMML 403
Query: 294 PYLVK 298
P + K
Sbjct: 404 PQVSK 408
>gi|356499006|ref|XP_003518335.1| PREDICTED: putative tRNA pseudouridine synthase-like, partial
[Glycine max]
Length = 453
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 91/183 (49%), Gaps = 21/183 (11%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+AM+ AY G Y GLQ ++ + TIE ++ A+FKAG + E +F Q I
Sbjct: 47 VAMLVAYVGTNYRGLQMQH-------DEHSLSTIEKELETAIFKAGGIRESNFGDLQKIG 99
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANK---------EAINEHLPEQIRILSIKRVTK 109
+ R++RTDKGV +L I+S K+ PE A +N +LP I+++SI +
Sbjct: 100 WARSSRTDKGVHSLATIISFKMEIPENAWNGDPYGFGLANYVNSYLPFDIKVISILPSQR 159
Query: 110 GFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTS 169
F+ + C R YSY P D+ +FN +L +EG H FHN+T+
Sbjct: 160 SFDPRKECILRKYSYLLPAEIIGIQSHFSDEVDYHISEFN---DILNVFEGIHPFHNYTA 216
Query: 170 KRK 172
+ K
Sbjct: 217 RSK 219
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 4/148 (2%)
Query: 174 LDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLI 233
L S R + C + G I + I+G+SFMLHQIRKMVG A+A+ R KD+I
Sbjct: 293 LSASHFRKVFQCSCGKLETSLGYNYIEISIQGESFMLHQIRKMVGTAVAVKRKALPKDII 352
Query: 234 EKTFG-LDQFDLPMAPGLGLLLEQVHYDLYNQ--KYGQDGMHESLHFHEVDKEVNEFRHK 290
+ + + LP+AP L+L + + + + M + E+ K V++F
Sbjct: 353 KLSLTRFSRIILPLAPSEALILRGNRFSIRTRPGNITRPEMQTIVKSEEIKKAVDDFYTS 412
Query: 291 FILPYLVK-TEITEKPMLAWLELLADHS 317
+LP + K + + P W+E L H+
Sbjct: 413 VMLPQVSKLLDPSRSPWDEWIEKLDAHT 440
>gi|344301779|gb|EGW32084.1| hypothetical protein SPAPADRAFT_61166 [Spathaspora passalidarum
NRRL Y-27907]
Length = 411
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 88/329 (26%), Positives = 139/329 (42%), Gaps = 65/329 (19%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ FAY G Y GL + + T+EG I++AL KA + E + + +
Sbjct: 47 VAIRFAYLGWNYNGLAYQK-------EETPLPTVEGTILDALHKAKLIKEPTVDC---CK 96
Query: 61 FQRAARTDKGVSALKQIVSLKL-----PEEANKEA-----------INEHLPEQIRILSI 104
F R RTDKGVSA+ Q++SL + PEE + +N LP IRI +I
Sbjct: 97 FSRCGRTDKGVSAMNQVISLNVRSSLTPEEQADSSNDVKEVKYATILNSLLPPDIRITAI 156
Query: 105 K-RVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHN 163
R F+++ +C +R Y Y F Q L D N L YEGTH+
Sbjct: 157 SLRPPPKFDARFSCESRHYKYL-----FLKQQ-------LDIDAMNQAAQL---YEGTHD 201
Query: 164 FHNFTSKRKPLDPS--CSRYIMSFDCEQPFVKDGL-ELITLKIKGQSFMLHQIRKMVGVA 220
F NF +D S SRY + DG+ ++ +KG +F+ HQ+R MV V
Sbjct: 202 FRNFCK----VDGSKQISRYERDIYSAKIMPVDGIPDMYCFDLKGSAFLWHQVRCMVAVL 257
Query: 221 MAIARGFTSKDLIEKTFGLDQF----------DLPMA------PGLGLLLEQVHYDLYNQ 264
+ +G ++ +D+F D P+ P + L LY
Sbjct: 258 FLVGQGLEPVSIVSDLMDVDKFPTKPQFEMANDAPLVLYDCTFPEMEWLSLSDMQALYQS 317
Query: 265 KYGQDGMHESLHFHEVDKEVNEFRHKFIL 293
K+ ++ H++ ++ + + +L
Sbjct: 318 KWSWTSFQGLVYDHQIKAQMAQIMDQIVL 346
>gi|15227735|ref|NP_180591.1| putative tRNA pseudouridine synthase [Arabidopsis thaliana]
gi|3914486|sp|O22928.1|PUSH_ARATH RecName: Full=Putative tRNA pseudouridine synthase; AltName:
Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|2347206|gb|AAC16945.1| putative pseudouridine synthase [Arabidopsis thaliana]
gi|330253276|gb|AEC08370.1| putative tRNA pseudouridine synthase [Arabidopsis thaliana]
Length = 510
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 93/184 (50%), Gaps = 22/184 (11%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ + Y G Y GLQ I + +KTIEG++ A++KAG + + ++ I
Sbjct: 65 VVIRIGYVGTDYRGLQ-------IQRDDPSIKTIEGELEVAIYKAGGIRDSNYGDLHKIG 117
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKE---------AINEHLPEQIRILSIKRVTK 109
+ R++RTDKGV +L +SLK+ PE A K+ I++HLPE IR+ S+ +
Sbjct: 118 WARSSRTDKGVHSLATSISLKMEIPETAWKDDPQGTVLAKCISKHLPENIRVFSVLPSNR 177
Query: 110 GFNSKNNCNARTYSYTCPTYAFATPQD-TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFT 168
F+ + C R YSY P T D+ FN +LK++EG + FHN+T
Sbjct: 178 RFDPRRECTLRKYSYLLPVDVLGIKNSFTSDEIDYHITDFN---EILKEFEGEYPFHNYT 234
Query: 169 SKRK 172
+ +
Sbjct: 235 QRSR 238
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 5/63 (7%)
Query: 195 GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFD---LPMAPGLG 251
G + + I G+SFMLHQIRKM+G A+A+ R +D+I L++F LP+AP
Sbjct: 340 GFGFVEISIWGESFMLHQIRKMIGTAVAVKRELLPRDIIR--LSLNKFTRIVLPLAPSEV 397
Query: 252 LLL 254
L+L
Sbjct: 398 LIL 400
>gi|260944536|ref|XP_002616566.1| hypothetical protein CLUG_03807 [Clavispora lusitaniae ATCC 42720]
gi|238850215|gb|EEQ39679.1| hypothetical protein CLUG_03807 [Clavispora lusitaniae ATCC 42720]
Length = 229
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 83/160 (51%), Gaps = 17/160 (10%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
M Y G GY G+Q + N +KTIE +I +A AG V++++ + F R
Sbjct: 1 MIGYCGTGYNGMQIQ--------NNPDVKTIEAEIFKAFIAAGAVSQENSTDLKKNGFMR 52
Query: 64 AARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
AARTDKGV A ++S KL +E IN HLPE+IR+ I+RV + F+ + C++R
Sbjct: 53 AARTDKGVHAAGNVISCKLILEDEDIMHKINSHLPEKIRLWGIERVNRSFDCRKLCSSRV 112
Query: 122 YSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGT 161
Y Y PT++ P R +N ++A ++ G
Sbjct: 113 YEYLLPTHSLLPP-------RPKSSLYNLIEASRAEHPGV 145
>gi|281206578|gb|EFA80764.1| hypothetical protein PPL_06350 [Polysphondylium pallidum PN500]
Length = 624
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 95/183 (51%), Gaps = 30/183 (16%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
MA++FAY G GY GL+ + G +E + +ALFKAG + + I+
Sbjct: 186 MALLFAYVGTGYHGLEYQI---------SGYNALENTLEQALFKAGLILPSNLGDLDRIR 236
Query: 61 FQRAARTDKGVSALKQIVSLKL---------PEEANK--EAINEHLPEQIRILSIKRVTK 109
+ R++RTDKGV +L +++ L PE+ E IN LP +RIL++ ++
Sbjct: 237 WSRSSRTDKGVHSLSTLLAGCLEIEDGSGYYPEKVAVLIEKINRGLPPNLRILALAPTSR 296
Query: 110 GFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTS 169
F+ + C +RTY Y P T +LT +Q N +++L Y G++++HNFTS
Sbjct: 297 SFDPRRQCTSRTYHYVLPKKYLGT--------KLTLEQIN--ESILPLYIGSNSYHNFTS 346
Query: 170 KRK 172
R+
Sbjct: 347 HRR 349
>gi|302781376|ref|XP_002972462.1| hypothetical protein SELMODRAFT_97541 [Selaginella moellendorffii]
gi|300159929|gb|EFJ26548.1| hypothetical protein SELMODRAFT_97541 [Selaginella moellendorffii]
Length = 428
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 94/190 (49%), Gaps = 36/190 (18%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ Y G Y GLQ + G+ ++E ++ EA++KAG ++E+++ ++
Sbjct: 4 VAIWVGYVGTDYKGLQIQRGV-------AGIHSVENELEEAIYKAGGISEENYRHLDKVR 56
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK-----------EAINEHLPEQIRILSIKRVTK 109
++R++RTDKGV +L +V++KL N +A N +LP I I + VTK
Sbjct: 57 WKRSSRTDKGVHSLCTVVTMKLEVAVNSWLNDVDGIKIADAFNAYLPANISIFGVVPVTK 116
Query: 110 GFNSKNNCNARTYSYTCPTYAFATPQDTKD--------DFRLTPDQFNFLQALLKQYEGT 161
F+++ +C +RTY Y P ++ DFR T LK EG
Sbjct: 117 SFDARRSCYSRTYDYYFPAACIGINNESSSEDVDQRIQDFRRT----------LKSLEGR 166
Query: 162 HNFHNFTSKR 171
H FHN+T +R
Sbjct: 167 HAFHNYTVRR 176
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 12/155 (7%)
Query: 171 RKPLDPSCSRYIMSFDCEQP-FVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTS 229
+ P+ S R + CE P + ++ +++ G+SFM+HQIRKMVG A+A+ R
Sbjct: 241 KDPVKASHFRNVAKCTCEGPEKLNCPSSVVRIRVTGESFMVHQIRKMVGTAIAVFRHVLP 300
Query: 230 KDLIE-KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKY-----GQDGMHESLHFHEVDKE 283
+D I T + LP+AP GL+L + + Y G G S +V +
Sbjct: 301 EDAIPVSTCRHARVVLPLAPPHGLVLSGNSFFPFRGGYTRAKGGTGGYFFSKLGIQVSSQ 360
Query: 284 VNEFRHKFILPYL---VKTEITEK--PMLAWLELL 313
+ E + F L L + + + E+ P WLE L
Sbjct: 361 IAERMNSFWLEKLAPVISSSMNEEEAPWSQWLESL 395
>gi|299470490|emb|CBN78481.1| pseudouridylate synthase, putative [Ectocarpus siliculosus]
Length = 743
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 95/203 (46%), Gaps = 34/203 (16%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ Y G + G Q Q ++T+EG++ AL+KAG + + ++ I
Sbjct: 31 VAIVVGYVGTAFHGWQQS-------TDAQNVRTVEGELETALWKAGAIADSNYGDLNKIG 83
Query: 61 FQRAARTDKGVSALKQIVSLK--LPEEA---------NKEAINEHLPEQIRILSIKRVTK 109
+ R +RTDKGV A K + + K LP+E K+ +NE LP+ IR S+ +V K
Sbjct: 84 WGRTSRTDKGVHASKTVAAAKLLLPQETFTATGMSQYGKDKLNEKLPDDIRCFSVSKVPK 143
Query: 110 GFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQ--FNFLQALLKQYEGTHNFHNF 167
F + C R Y+Y P L PD + LLK + GTH+FHN+
Sbjct: 144 SFRGREECTLREYTYYLPR-------------ELLPDDEALGKFRELLKLFVGTHSFHNY 190
Query: 168 TS-KRKPLDPSCSRYIMSFDCEQ 189
S K + L R S D ++
Sbjct: 191 ASTKGRQLKEVRKRVKASIDLKK 213
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 197 ELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMAPGLGLLLE 255
E + + I+G++F+ +QIR M+G A+ ARG +E + +P+AP GL+LE
Sbjct: 449 EFVRIDIRGKAFVYNQIRLMIGGALGEARGDLWSGFVEAALKTPYKLRVPLAPAEGLVLE 508
>gi|407035846|gb|EKE37872.1| pseudouridine synthase, putative [Entamoeba nuttalli P19]
Length = 366
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 123/279 (44%), Gaps = 43/279 (15%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ Y G+ Y G+Q L + + +G I LFKA F T NT ++ +
Sbjct: 38 IAIHLTYIGIDYNGIQCTLLNDVTDATFDSVVN-DGTIEYQLFKALFKTRLIQNT-KDCK 95
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKEAI---------------NEHLPEQIRILSIK 105
+ R RTDKGVSA Q+V L + E I N LP IR L
Sbjct: 96 YNRCGRTDKGVSAFGQVVDLWVRSNLKDETILYTKREGELDYCRMLNGLLPTDIRCLGWC 155
Query: 106 RVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFH 165
V FNS+ +C +RTY Y ++ P+ ++ + + G H+F
Sbjct: 156 GVPDDFNSRFSCQSRTYHYYFDPSSYDVPK---------------MKEAAQLFLGEHDFT 200
Query: 166 NFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIAR 225
NF K+ P C R + SF+ E+ DGL + G +F+ HQ+R MVG AI +
Sbjct: 201 NF-CKKDPAVSHCVRRVNSFEVEET---DGLSRFV--VCGTAFVWHQVRYMVGALFAIGQ 254
Query: 226 GFTSKDLIEKTFGLDQFDLP----MAPGLGLLLEQVHYD 260
G + + I++ ++ + P AP L+L + YD
Sbjct: 255 G-ANPESIKQLLDVEHYTKPNYFKYAPAYPLVLYECKYD 292
>gi|67484392|ref|XP_657416.1| pseudouridine synthase [Entamoeba histolytica HM-1:IMSS]
gi|56474668|gb|EAL52030.1| pseudouridine synthase, putative [Entamoeba histolytica HM-1:IMSS]
gi|449706882|gb|EMD46641.1| tRNA pseudouridine synthase, putative [Entamoeba histolytica KU27]
Length = 366
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/286 (28%), Positives = 124/286 (43%), Gaps = 57/286 (19%)
Query: 1 MAMMFAYSGVGYFGLQSKYL-------FFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSF 53
+A+ Y G+ Y G+Q L F + N G TIE + +ALFK +
Sbjct: 38 IAIRLTYIGIDYNGIQCTLLNDVTDATFDSVI--NDG--TIEYQLFKALFKTRLI----- 88
Query: 54 NTPQNIQFQRAARTDKGVSALKQIVSLKLPEEANKEAI---------------NEHLPEQ 98
++ ++ R RTDKGVSA Q+V L + E I N LP
Sbjct: 89 QNTKDCKYNRCGRTDKGVSAFGQVVDLWVRSNLKDETILYTKREGELDYCRMLNGLLPTD 148
Query: 99 IRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQY 158
IR L V FNS+ +C +RTY Y ++ P+ ++ + +
Sbjct: 149 IRCLGWCGVPDDFNSRFSCQSRTYHYYFDPSSYDVPK---------------MKEAAQLF 193
Query: 159 EGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVG 218
G H+F NF K+ P C R + SF+ E+ DGL + G +F+ HQ+R MVG
Sbjct: 194 LGEHDFTNF-CKKDPAVSHCVRRVNSFEVEET---DGLSRFV--VCGTAFVWHQVRYMVG 247
Query: 219 VAMAIARGFTSKDLIEKTFGLDQFDLP----MAPGLGLLLEQVHYD 260
AI +G + + I++ ++ + P AP L+L + YD
Sbjct: 248 ALFAIGQG-ANPESIKQLLDVEHYTKPNYFKYAPAYPLVLYECKYD 292
>gi|167377399|ref|XP_001734387.1| tRNA pseudouridine synthase [Entamoeba dispar SAW760]
gi|165904128|gb|EDR29463.1| tRNA pseudouridine synthase, putative [Entamoeba dispar SAW760]
Length = 366
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 126/281 (44%), Gaps = 47/281 (16%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTI--EGDIMEALFKAGFVTEDSFNTPQN 58
+A+ Y G+ Y G+Q L + + ++ +G I LFKA F T NT ++
Sbjct: 38 IAIHLTYIGIDYNGIQCTLLNDVT---DSTFDSVVNDGTIEYQLFKALFKTRLIQNT-KD 93
Query: 59 IQFQRAARTDKGVSALKQIVSLKLPEEANKEAI---------------NEHLPEQIRILS 103
++ R RTDKGVSA Q+V L + E I N LP IR L
Sbjct: 94 CKYNRCGRTDKGVSAFGQVVDLWVRSNLKDETILYTKREGELDYCRMLNGLLPIDIRCLG 153
Query: 104 IKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHN 163
V FNS+ +C +RTY Y ++ P+ ++ + + G H+
Sbjct: 154 WCGVPDDFNSRFSCQSRTYHYYFDPSSYDVPK---------------MKEAAQLFLGEHD 198
Query: 164 FHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAI 223
F NF K+ P P C R + SF+ E+ +GL + G +F+ HQ+R MVG AI
Sbjct: 199 FTNF-CKKDPAVPHCIRRVNSFEVEEI---NGLSRFV--VCGTAFVWHQVRYMVGALFAI 252
Query: 224 ARGFTSKDLIEKTFGLDQFDLP----MAPGLGLLLEQVHYD 260
+G + + I++ ++ + P AP L+L + YD
Sbjct: 253 GQG-ANPESIKQLLDVEHYTKPNYFKYAPAYPLVLYECKYD 292
>gi|297826435|ref|XP_002881100.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297326939|gb|EFH57359.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 507
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 92/184 (50%), Gaps = 22/184 (11%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ + Y G Y GLQ I + +KTIEG++ A++KAG + + ++ I
Sbjct: 65 VVIRIGYVGTDYRGLQ-------IQRDDPSLKTIEGELEVAIYKAGGIRDSNYGDLHKIG 117
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKE---------AINEHLPEQIRILSIKRVTK 109
+ R++RTDKGV +L +SLK+ PE A K+ I++HLPE IR+ S+ +
Sbjct: 118 WARSSRTDKGVHSLATSISLKMEIPETAWKDDPQGTVLAKCISKHLPENIRVFSVLPSNR 177
Query: 110 GFNSKNNCNARTYSYTCPTYAFATPQD-TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFT 168
F+ + C R YSY P T D+ FN +L ++EG + FHN+T
Sbjct: 178 RFDPRRECTLRKYSYLLPVDVIGIKNSFTSDEIDYHITDFN---KILNEFEGEYPFHNYT 234
Query: 169 SKRK 172
+ +
Sbjct: 235 QRSR 238
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 78/154 (50%), Gaps = 18/154 (11%)
Query: 195 GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFD---LPMAPGLG 251
G + + I G+SFMLHQIRKM+G A+A+ R +D+I L++F LP+AP
Sbjct: 338 GFGFVEISIWGESFMLHQIRKMIGTAVAVKRELLPRDIIR--LSLNKFTRIVLPLAPSEV 395
Query: 252 LLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEK-PMLAWL 310
L+L +++ + + GM + EV+K++ EF ++P + + +EK P W+
Sbjct: 396 LILRGNSFEV-RRLPERPGMEATGESEEVEKDIEEFYRAVMVPQVSRFLDSEKSPWKEWV 454
Query: 311 ELLADHSFETRAAKAALAAANGEELQEVTDGEEE 344
E L + EEL++V G EE
Sbjct: 455 EHLDRND-----------GLIDEELEDVRKGWEE 477
>gi|325959678|ref|YP_004291144.1| tRNA pseudouridine synthase A [Methanobacterium sp. AL-21]
gi|325331110|gb|ADZ10172.1| tRNA pseudouridine synthase A [Methanobacterium sp. AL-21]
Length = 271
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 118/267 (44%), Gaps = 48/267 (17%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A AY G Y G Q R + TIEG+++ A K+G ++P+
Sbjct: 4 IAFKVAYIGTDYHGFQ----------RQPNLPTIEGELLRAFKKSGIS-----DSPEKSD 48
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNAR 120
+ A RTD+GVSAL +V LK ++ IN +LP IRI+ V+ GF + R
Sbjct: 49 YSIAGRTDRGVSALGNVVCLKTDKDVTINRINYYLPSNIRIIGSTMVSNGFKPR-YAKLR 107
Query: 121 TYSYTCPTYAFATPQDTKDDFRLTPDQFN--FLQALLKQYEGTHNFHNFTSKRKPLDPSC 178
Y Y D L P+ N ++ KQ EG HN+ NF SKR P
Sbjct: 108 HYRYIL-------------DKSLCPNTLNLKLMKQAAKQMEGKHNYINF-SKRSERAP-- 151
Query: 179 SRYIMSFD-CEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTF 237
R + S D E P + I + G+SF+ + +RKMV V + R + + +E F
Sbjct: 152 ERMVYSVDLVETP------DNIVFDVVGESFLWNMVRKMVKVLVMFGREELTLENLETLF 205
Query: 238 GLDQFDLPMA----PGLGLLLEQVHYD 260
D+P A GL+L V YD
Sbjct: 206 NP---DVPAAIKPVASDGLILMDVVYD 229
>gi|448304472|ref|ZP_21494410.1| tRNA pseudouridine synthase A [Natronorubrum sulfidifaciens JCM
14089]
gi|445590905|gb|ELY45117.1| tRNA pseudouridine synthase A [Natronorubrum sulfidifaciens JCM
14089]
Length = 318
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 117/265 (44%), Gaps = 33/265 (12%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G GY+G Q R + T+E I +AL + D+ + P +
Sbjct: 39 AFRIAYDGTGYYGFQ----------RQPDVATVEDTIFDALRSLEVLAPDA-DKPAG--Y 85
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSAL Q ++L+ PE A+N LP +R + V F++ ++ RT
Sbjct: 86 AAAGRTDAGVSALAQTITLEGPEWLTPRALNAELPAAVRAWAFADVDDSFHATHDATRRT 145
Query: 122 YS---YTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSC 178
Y+ Y P A ++ D + D+F+ A + G+H+FHN T P D +
Sbjct: 146 YTYHLYAPPGAADSSTTPGGVDRAIDDDRFH---AACEALSGSHDFHNLT----PDDHNT 198
Query: 179 SRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFG 238
R +DG E + + + F +R++V +A A++ G S + IE+ F
Sbjct: 199 ERSPT-----LSATRDG-EYLVVTVTAGGFARELVRRLVSLARAVSTGAASLEKIERAFA 252
Query: 239 LDQF----DLPMAPGLGLLLEQVHY 259
D + AP L+L V Y
Sbjct: 253 PDPLPGHEGIAPAPAEPLVLADVDY 277
>gi|384499620|gb|EIE90111.1| hypothetical protein RO3G_14822 [Rhizopus delemar RA 99-880]
Length = 444
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 121/277 (43%), Gaps = 59/277 (21%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G Y G + + + T+EG+I +AL K +T +P+
Sbjct: 75 IALKVAYLGWNYCGFAH--------LKEKNIPTVEGEIFKALQKCSLIT-----SPEECN 121
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK--------------EAINEHLPEQIRILSIKR 106
+ R RTDKGVS L Q+++L + K IN LPE IRIL+
Sbjct: 122 YSRGGRTDKGVSGLGQVIALDVRSTQRKLIKEHGDDRDLPYINMINSFLPEDIRILAWAP 181
Query: 107 VTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHN 166
V FN++ +C +RTY Y F+ ++ G+H+F N
Sbjct: 182 VATTFNARFDCLSRTYKYF---------------FKKEGQDIERMREAASYMIGSHDFRN 226
Query: 167 FTSKRKPLDPS-----CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAM 221
F LD + +R I+SF+ P +D E +K+KG F+ HQ+R ++ V
Sbjct: 227 FCL----LDAARNLQHYTREIISFEI-NPVEQDFYE---VKLKGTGFLWHQVRYIMSVLF 278
Query: 222 AIARGFTSKDLIEKTFGLDQF----DLPMAPGLGLLL 254
+ + +I+ +D+ D P+A G+ L+L
Sbjct: 279 LVGQRLEHPAIIQDLLNIDKIPARPDYPLASGIPLML 315
>gi|123438137|ref|XP_001309856.1| tRNA pseudouridine synthase family protein [Trichomonas vaginalis
G3]
gi|121891601|gb|EAX96926.1| tRNA pseudouridine synthase family protein [Trichomonas vaginalis
G3]
Length = 365
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/325 (24%), Positives = 148/325 (45%), Gaps = 37/325 (11%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ + Y G Y G +Q KT+ ++ EAL G ++ + T ++
Sbjct: 40 IALCYGYLGTNYHGSS---------LHDQD-KTVTLELQEALVNLGVISPN--RTKGALK 87
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQ------IRILSIKRVTKGFN 112
+ ++RTD GV A KQ+ + +L PE + + + +Q IR+ + + FN
Sbjct: 88 WSESSRTDTGVHAAKQVATFRLVLPEGVKVKDLPRLIQKQLSKNSPIRVWAAVKPGIIFN 147
Query: 113 SKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQA-LLKQYEGTHNFHNFTSK- 170
++ + ++R Y Y P F++ D N+L+A + + G H + N+T
Sbjct: 148 AQQSASSRRYHYLLPVNTFSSE---------NIDHLNYLRAKICPIFVGRHQYANYTRHI 198
Query: 171 RKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSK 230
L + + I F PF +G + + I G SFML+QIRKM+ +A++ ++
Sbjct: 199 TDELLHTSIKTISEFTFTDPFDVNGTKYVLFTISGNSFMLNQIRKMIAAVLAVSHHLMTE 258
Query: 231 DLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQD-----GMHESLHFHEVDKEVN 285
D ++ T ++ LP G GL L+QV ++ NQ Q + +HF V +E+
Sbjct: 259 DDLKDTLTETRWLLPRLIGTGLFLDQVFFE-QNQIIRQHKDKPIPKKKDIHFSFVSEEIE 317
Query: 286 EFRHKFILPYLVKTEITEKPMLAWL 310
++ + ++ + + P W+
Sbjct: 318 VWKRNILFNHIDQIVKEKDPFKEWV 342
>gi|403375889|gb|EJY87920.1| Pseudouridine synthase [Oxytricha trifallax]
Length = 482
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 127/279 (45%), Gaps = 47/279 (16%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDS--FNTPQN 58
+A F+Y G Y GL + +TIEG I AL +A V D F +
Sbjct: 105 IAFKFSYLGKDYKGLA---------IQTNTDETIEGRIFAALKRACLVQPDIPIFKS--- 152
Query: 59 IQFQRAARTDKGVSALKQIVSL---KLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKN 115
Q+ R RTDKGVSAL ++SL KL ++ + +N LP IR++S V F+S+
Sbjct: 153 -QYTRCGRTDKGVSALGNVLSLYVRKLKDDNYCQVLNHCLPADIRMISFSEVPAHFDSRF 211
Query: 116 NCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL- 174
+C R Y Y F Q+ ++ ++Y G H+F NF K + +
Sbjct: 212 SCIYREYKY------FFVQQNMN---------IEKMKQAARKYLGIHDFRNFCKKDESVK 256
Query: 175 ------DPSCSRYIMSFDCEQPFV---KDGLELITLKIKGQSFMLHQIRKMVGVAMAIAR 225
D + R I FD Q + + L + + I+G +F+ HQ+R M+ V I R
Sbjct: 257 LEDDEDDQNFMRRIYRFDIVQQHINVQNEKLSIWHVVIRGSAFLWHQVRCMMAVLFMIGR 316
Query: 226 GFTSKDLIEKTFGLDQF----DLPMAPGLGLLLEQVHYD 260
G + +I+ + +++ + +A GL+L + +D
Sbjct: 317 GEEDESVIDLLYDIEKLPERPNYNIASEFGLILNECGFD 355
>gi|357491367|ref|XP_003615971.1| Pseudouridylate synthase [Medicago truncatula]
gi|355517306|gb|AES98929.1| Pseudouridylate synthase [Medicago truncatula]
Length = 501
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 102/207 (49%), Gaps = 32/207 (15%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQ-GMKTIEGDIMEALFKAGFVTEDSFNTPQNI 59
+ M AY+G Y GLQ + R+Q + T+E ++ A+FKAG + E + + I
Sbjct: 59 VVMRIAYTGTNYRGLQMQ--------RDQNSLSTVEKELESAIFKAGGIRESNLGDLEKI 110
Query: 60 QFQRAARTDKGVSALKQIVSLKL--PEEANKE---------AINEHLPEQIRILSIKRVT 108
+ R++RTDKGV +L +V+ K+ PE + E +N +LP I+++SI
Sbjct: 111 GWARSSRTDKGVHSLATMVAFKMEIPENSWNEDPFGFALANYVNSYLPCDIKVISILPAQ 170
Query: 109 KGFNSKNNCNARTYSYTCPTYAFAT-PQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNF 167
+ F+ + C R YSY P + D+ +FN +LK++EG H FHN+
Sbjct: 171 RSFDPRKECVLRKYSYLLPADIIGIQSHSSNDEIDYHMSEFN---DILKEFEGGHPFHNY 227
Query: 168 TSK--------RKPLDPSCSRYIMSFD 186
TS+ R+P C + +++
Sbjct: 228 TSRSRYRRHIPRRPSHSKCGEILSAYN 254
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 8/129 (6%)
Query: 195 GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFD---LPMAPGLG 251
G I + I+G+SFMLHQIRKMV A+A+ R +D+I T L +F LP+AP
Sbjct: 346 GHSYIEIYIEGESFMLHQIRKMVATAVAVKRKLLPRDII--TLSLSKFSRIILPLAPSEV 403
Query: 252 LLLEQVHYDLYNQ--KYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVK-TEITEKPMLA 308
LLL + + + + M + E++K V++F +LP + K + + P +
Sbjct: 404 LLLRGNSFSMRTKPGNVTRPEMQTIVESEEINKVVDDFYRSVMLPQVSKFLDPSRVPWVE 463
Query: 309 WLELLADHS 317
W+E H+
Sbjct: 464 WIEKFDAHT 472
>gi|355430068|gb|AER92594.1| putative pseudouridine synthase family protein [Linum
usitatissimum]
Length = 565
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 89/183 (48%), Gaps = 20/183 (10%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ + Y G Y GLQ ++ + T+E ++ A+FKAG + E ++ +
Sbjct: 117 VVLRVGYVGTDYRGLQKQH-------DEHSLSTVEAELENAIFKAGGILESNYGHLNKVA 169
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKE---------AINEHLPEQIRILSIKRVTK 109
+ R++RTDKGV +L +++K+ PE A K+ +N +LP+ IRI SI K
Sbjct: 170 WARSSRTDKGVHSLATTITMKMEIPETAWKDDPYGIALARTVNSYLPDSIRIFSILPAQK 229
Query: 110 GFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTS 169
F+ + CN R YSY P + D + + + +L +EG H FHN+T
Sbjct: 230 NFDPRLECNMRKYSYLLPAEIIGIRSHSDAD--EISEHISDFRKILNAFEGDHPFHNYTI 287
Query: 170 KRK 172
+ K
Sbjct: 288 RSK 290
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 12/146 (8%)
Query: 180 RYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGL 239
R I+ C + G + + I G+SFMLHQIRKMVG A+A+ R +D++ T L
Sbjct: 376 RKIIRCSCGELEKSSGYNFVEISIWGESFMLHQIRKMVGTAVAVKRDLLPRDIL--TLSL 433
Query: 240 DQFD---LPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHF----HEVDKEVNEFRHKFI 292
+F LP+AP L+L Y L + ++G + E+ K V+EF +
Sbjct: 434 AKFSRIVLPLAPSEVLILRGNSYSL--TRKSREGTRSEVQTMSEAEEILKGVDEFYVDKL 491
Query: 293 LPYLVK-TEITEKPMLAWLELLADHS 317
LP + K + + P L W+E L +H+
Sbjct: 492 LPQVSKFLDPSSSPWLEWVEKLDEHT 517
>gi|344228480|gb|EGV60366.1| hypothetical protein CANTEDRAFT_127546 [Candida tenuis ATCC 10573]
Length = 415
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 121/271 (44%), Gaps = 51/271 (18%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ FAY G Y GL ++ + + T+E I++AL A V + P
Sbjct: 54 VAIRFAYLGWNYNGLAFQF-------EDTPLPTVEEQILKALATAKLVKD---AEPGCCD 103
Query: 61 FQRAARTDKGVSALKQIVSLKL-----PEEANKEA-----------INEHLPEQIRILSI 104
F R RTDKGVSA+ Q++SL++ PE+ ++ +N LP IR+ +I
Sbjct: 104 FSRCGRTDKGVSAMNQVISLRVRSDFSPEDQQLQSNDDKEIPYIFILNSILPPDIRVTAI 163
Query: 105 K-RVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHN 163
R F+++ +C R Y Y + LQA +Y+G+H+
Sbjct: 164 SLRPPPKFDARFSCEYRHYRYLIAKEGL---------------DLDLLQAAAAKYKGSHD 208
Query: 164 FHNFTSKRKPLDPS--CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAM 221
F NF +D S + Y Q D E + L +KG +F+ HQ+R MV V +
Sbjct: 209 FRNFCK----IDGSKQITNYRREIYHSQIIPWDD-EFVMLDLKGSAFLWHQVRYMVAVIL 263
Query: 222 AIARGFTSKDLIEKTFGLDQFDLPMAPGLGL 252
+I +G LI+ F ++++ P P L
Sbjct: 264 SIGQGHEQMSLIDNLFDVEKY--PSKPNYEL 292
>gi|348689580|gb|EGZ29394.1| hypothetical protein PHYSODRAFT_358674 [Phytophthora sojae]
Length = 935
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 88/178 (49%), Gaps = 26/178 (14%)
Query: 9 GVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTD 68
G GY GLQ N ++TIE +I A+F+AG + E +F I + R++RTD
Sbjct: 2 GTGYHGLQ----------LNDNVETIEDEIRRAIFEAGAMRESNFEDLGKIDWARSSRTD 51
Query: 69 KGVSALKQIVSLK-LPEEANK------------EAINEHLPEQIRILSIKRVTKGFNSKN 115
KGV A + S K L +E NK EA+N LP+ IR+ S RV K F+++
Sbjct: 52 KGVHAGCIVFSGKLLIDEENKVDPVSGRVRGLTEALNASLPDNIRVFSCTRVNKRFSARK 111
Query: 116 NCNARTYSYTCPTYAFATPQDTKD--DFRLTPDQFNFLQALLKQYEGTHNFHNFTSKR 171
NC R Y Y P D DF F +A L++YEG H+FHNFT R
Sbjct: 112 NCVLREYEYFMPLSFLKDSIIGSDAADFDTDEAIAEFCRA-LRRYEGVHDFHNFTRSR 168
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 21/151 (13%)
Query: 177 SCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKT 236
SCS ++ C +P ++ + I GQ+F+L+QIR MVG A+A+A S+ +
Sbjct: 246 SCSGSLVPDFCGEPHLR-------VHIVGQAFLLNQIRCMVGGALAVATKGMSRVAFDAA 298
Query: 237 FGLDQF-DLPMAPGLGLLLEQVHY-------DLYNQ------KYGQDGMHESLHFHEVDK 282
++ +P+AP GL+L + LY K +D +H L + D+
Sbjct: 299 LLTNRIVRVPIAPAEGLVLLSSSFGGKLHTVSLYEDPNTTLAKERKDLVHRILLNRQEDE 358
Query: 283 EVNEFRHKFILPYLVKTEITEKPMLAWLELL 313
E+ +FR + I + + E+ M W L
Sbjct: 359 EMTKFREEVIYKEIASSWNMEEKMDRWRAYL 389
>gi|168042339|ref|XP_001773646.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675034|gb|EDQ61534.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 445
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 92/187 (49%), Gaps = 30/187 (16%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG-MKTIEGDIMEALFKAGFVTEDSFNTPQNI 59
+AM Y G Y GLQ + R G +TIE ++ A+FKAG + E +F I
Sbjct: 4 VAMWLGYVGTRYKGLQIQ--------RGPGSAQTIEEELELAIFKAGGMIESNFGNLSKI 55
Query: 60 QFQRAARTDKGVSALKQIVSLKL--PEEAN---------KEAINEHLPEQIRILSIKRVT 108
+ R++RTDKGV +L ++S+K+ PE A + IN HL IR+ I VT
Sbjct: 56 SWTRSSRTDKGVHSLCTVISMKMEVPEAAWVNDMDGFALADNINFHLSPFIRVFGITPVT 115
Query: 109 KGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQ----FNFLQALLKQYEGTHNF 164
+ F ++++C RTY Y P DT P Q ++LL +EG H +
Sbjct: 116 RSFRARHDCCTRTYDYLLPAAILGIHPDT------VPSQVEQRVTKFRSLLHLFEGKHAY 169
Query: 165 HNFTSKR 171
HN+T +R
Sbjct: 170 HNYTIRR 176
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 180 RYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGL 239
R ++SF+C P + I + I G SFM+HQIRKM+G A+A+ G D+I +
Sbjct: 263 RKVISFNCGMPETFGEAQFIRISITGSSFMVHQIRKMIGTAIAVFHGLLPGDVIPISLAR 322
Query: 240 -DQFDLPMAPGLGLLL 254
+ LP+AP GL+L
Sbjct: 323 HSRIVLPLAPPDGLIL 338
>gi|50293511|ref|XP_449167.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528480|emb|CAG62137.1| unnamed protein product [Candida glabrata]
Length = 438
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 136/317 (42%), Gaps = 74/317 (23%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ FAY G Y GL I + TIEG I+EAL K V TPQ +
Sbjct: 88 IALRFAYLGWNYNGLA-------IQKDPTPLPTIEGTIIEALNKCKLVPS---ITPQEFE 137
Query: 61 FQRAARTDKGVSALKQIVSLK----LPEEANKEAINEH------------LPEQIRILSI 104
F R RTDKGVSA+ Q++SL+ L +E K+ N+H LP+ IRI ++
Sbjct: 138 FSRCGRTDKGVSAMNQVISLRVRSNLTDEEQKDPRNDHKEIQYVAILNQLLPDDIRISAV 197
Query: 105 -KRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHN 163
R F+++ +C R Y Y KD L + +Q K YEG H+
Sbjct: 198 CLRPPNSFDARFSCEYRHYKYLF----------HKDGLDL-----DRMQKAAKLYEGEHD 242
Query: 164 FHNFTSKRKPLDPS-----CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVG 218
F NF LD S +R ++S + + + + + G +F+ HQ+R M
Sbjct: 243 FRNFCK----LDGSKQITNYNRTMISANIKHVYN----DFYCFDLIGSAFLWHQVRCMTA 294
Query: 219 VAMAIARGFTSKDLIEKTFGLDQFDLP------MAPGLGLLLEQVHY-----------DL 261
+ + +G LIEK LD +P MA + LLL + D
Sbjct: 295 ILFLVGQGLEEPTLIEKM--LDVTSMPQKPMYEMASDIPLLLYDCKFPAMEWQEANLNDY 352
Query: 262 YNQKYGQDGMHESLHFH 278
+ KYG+ +L +H
Sbjct: 353 KSVKYGKAVSALALDYH 369
>gi|449016496|dbj|BAM79898.1| similar to tRNA-pseudouridine synthase I [Cyanidioschyzon merolae
strain 10D]
Length = 773
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 84/153 (54%), Gaps = 26/153 (16%)
Query: 33 TIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLPEE------A 86
T+EG++ +AL++ G VTE +F I + RA+RTDKGV A+ +VS KL + +
Sbjct: 137 TVEGELAQALYRIGAVTELNFMKLSKICWSRASRTDKGVHAVANVVSAKLLLDLRRDLTS 196
Query: 87 NKE-------AINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKD 139
N E +N LP IR+ +R++KGF +++ C R Y Y P + D ++
Sbjct: 197 NDELTDLFVDRLNAQLPPNIRVFGGQRMSKGFRARSACTLREYDYLLPRWVL----DGRE 252
Query: 140 DFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRK 172
D FLQA L+ +EGTH FHNF+ K +
Sbjct: 253 DL--------FLQA-LRCFEGTHRFHNFSGKER 276
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 180 RYIMSFDCEQPFVKD--GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTF 237
R + F E +D G + + ++++GQSF+LHQIR+++G + +ARG S + +E
Sbjct: 525 RTLYRFHVEPFLSRDDHGCDFLLVRVRGQSFVLHQIRRLIGAGILVARGHLSLEALEAAL 584
Query: 238 -GLDQFDLPMAPGLGLLLEQ 256
G + APG L+L Q
Sbjct: 585 EGPYRVVFWRAPGSCLMLYQ 604
>gi|448689644|ref|ZP_21695228.1| tRNA pseudouridine synthase A [Haloarcula japonica DSM 6131]
gi|445777915|gb|EMA28875.1| tRNA pseudouridine synthase A [Haloarcula japonica DSM 6131]
Length = 275
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 114/262 (43%), Gaps = 33/262 (12%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G Y G Q R + T+EG + AL + G V E P+ ++
Sbjct: 3 AYRVAYDGRPYHGFQ----------RQPDVDTVEGRLRSALVRLG-VCERGEGLPE--RY 49
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSA Q ++ P + N LP+ +R+ + VT+GF++ + RT
Sbjct: 50 AAAGRTDAGVSARAQTIAFDAPAWLSPAVFNGQLPDDVRVWASADVTEGFHATYDATQRT 109
Query: 122 YSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRY 181
Y+Y Y +A P D D F P + GTH+FHN TS D + +
Sbjct: 110 YTY----YLYA-PTDV-DRFVSGPVDDQRWADAVDALAGTHDFHNLTS-----DDTGTER 158
Query: 182 IMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQ 241
+ D + +DG + + ++ F +R++V +A A+A G +++ +
Sbjct: 159 TVGID----WTRDG-QFLVVRFTAGGFCRQLVRRLVSLAAAVADGSAPLSKVDRVLSPEP 213
Query: 242 FD----LPMAPGLGLLLEQVHY 259
+P AP L+L V Y
Sbjct: 214 ISGPDGVPPAPPEPLVLTDVSY 235
>gi|260942163|ref|XP_002615380.1| hypothetical protein CLUG_04262 [Clavispora lusitaniae ATCC 42720]
gi|238850670|gb|EEQ40134.1| hypothetical protein CLUG_04262 [Clavispora lusitaniae ATCC 42720]
Length = 447
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 115/261 (44%), Gaps = 49/261 (18%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A FAY G Y GL + + T+E +I++A+ KA V E P +
Sbjct: 86 VAFRFAYMGWNYNGLNFQN-------EPTPLPTVEEEILQAMTKAKLVPEAD---PASCN 135
Query: 61 FQRAARTDKGVSALKQIVSLKL------PEEANKEA----------INEHLPEQIRILSI 104
F R RTDKGVSAL Q++SL + E A+KE +N LP IRI ++
Sbjct: 136 FSRCGRTDKGVSALNQVISLDVRSALSKEEHADKEKDVKELPYLTILNALLPPDIRITAV 195
Query: 105 K-RVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHN 163
R FN++ +C R Y Y F+ T + +Q +YEG H+
Sbjct: 196 CLRPPPNFNARFSCKYRHYKYL---------------FKKTDLDVDLMQEAALKYEGPHD 240
Query: 164 FHNFT--SKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAM 221
F NF K + C R + S E KD + +KG +F+ HQ+R MV V
Sbjct: 241 FRNFCKIDGSKQITNHC-REVYSARIEH--FKD--DFYVFDLKGTAFLWHQVRCMVAVLF 295
Query: 222 AIARGFTSKDLIEKTFGLDQF 242
++ + S +++ + +F
Sbjct: 296 SVGQKLESPSIVDDLLNVSKF 316
>gi|384496190|gb|EIE86681.1| hypothetical protein RO3G_11392 [Rhizopus delemar RA 99-880]
Length = 450
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 122/286 (42%), Gaps = 62/286 (21%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G Y G S+ + + TIE + +AL + V E +I
Sbjct: 61 IALRVAYIGWNYIGFASQQ-------DPERIPTIEDMLFKALKECKLVAE----IDDSID 109
Query: 61 FQRAARTDKGVSALKQIVSLK--------------LPEEAN---KEAINEHLPEQIRILS 103
+ R RTD+GVS L Q+++L LP E + +N LP IR+L+
Sbjct: 110 YTRCGRTDRGVSGLGQVIALWVRSKKLTSDPSPDLLPAEQEFPYVDTLNRMLPPDIRVLA 169
Query: 104 IKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHN 163
V + F+++ +C +RTY Y F ++ K +EG H+
Sbjct: 170 WAPVPEDFSARYHCTSRTYKYF---------------FSRGKMDIEKMRQGCKYFEGEHD 214
Query: 164 FHNFTSKRKPLDP-----SCSRYIMSFDC------EQPFVKDGLELITLKIKGQSFMLHQ 212
F NF +DP S R+I+S + + DG + +++KG +F+ HQ
Sbjct: 215 FRNFCK----MDPAKNIQSYDRHILSMTVRPVDHTQTAHIGDGTDFYEVELKGTAFLWHQ 270
Query: 213 IRKMVGVAMAIARGFTSKDLIEKTFGLDQF----DLPMAPGLGLLL 254
+R M+ V + +G + I +++ D PMA L L+L
Sbjct: 271 VRYMMSVLFLVGQGLEPPETIRDVLDIEKVPSKPDFPMASDLPLVL 316
>gi|302417130|ref|XP_003006396.1| tRNA pseudouridine synthase [Verticillium albo-atrum VaMs.102]
gi|261353998|gb|EEY16426.1| tRNA pseudouridine synthase [Verticillium albo-atrum VaMs.102]
Length = 439
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 69/124 (55%), Gaps = 12/124 (9%)
Query: 10 VGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDK 69
GY+GLQ N KTIEGD+ +A AG +++ + + P+ R ARTDK
Sbjct: 54 TGYYGLQI----------NWDEKTIEGDLFKAFIAAGAISKANADDPKKSSLSRCARTDK 103
Query: 70 GVSALKQIVSLKLPEEANK--EAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCP 127
GV A ++SLKL E + + IN HLP+QIR+ ++R + F++ C++R Y Y P
Sbjct: 104 GVHAAGNLISLKLIIEDDDIVDKINAHLPDQIRVWGLQRTSNSFSAYQACDSRWYEYLLP 163
Query: 128 TYAF 131
TY
Sbjct: 164 TYCL 167
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQ-PFVKDGLELI 199
+++T ++ + LQA L QY GT+NFHN+T ++ DPS R+I SF + P + +
Sbjct: 303 YQVTNERLDQLQAALDQYVGTYNFHNYTIQKSFKDPSAKRHIKSFQVNKTPIQIRDTQWV 362
Query: 200 TLKIKGQSFMLHQIRKMVGVAMAI 223
++K+ GQSFM+HQIRKM+ +A +
Sbjct: 363 SIKVHGQSFMMHQIRKMISMATLV 386
>gi|255553385|ref|XP_002517734.1| pseudouridylate synthase, putative [Ricinus communis]
gi|223543132|gb|EEF44666.1| pseudouridylate synthase, putative [Ricinus communis]
Length = 377
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 88/184 (47%), Gaps = 22/184 (11%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ + Y G Y GLQ + + TIE ++ A+FKAG + + ++ I
Sbjct: 56 VVLRVGYVGTDYRGLQKQE-------DEHSLSTIEAELECAIFKAGGILDSNYGNLHKIA 108
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANK---------EAINEHLPEQIRILSIKRVTK 109
+ R++RTDKGV +L ++S+K+ PE A K E +N +LP+ IRI SI K
Sbjct: 109 WARSSRTDKGVHSLATMISMKMEIPENAWKEDPNGIALAECVNYYLPDNIRIFSILPSQK 168
Query: 110 GFNSKNNCNARTYSYTCPTYAFATPQD-TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFT 168
F+ + CN R YSY P T + FN +L +EG H FHN+T
Sbjct: 169 SFDPRRECNLRKYSYLLPAEIIGIKGHFTSAEIDNHISDFN---DILNAFEGEHPFHNYT 225
Query: 169 SKRK 172
+ K
Sbjct: 226 IRSK 229
>gi|448439765|ref|ZP_21588177.1| tRNA pseudouridine synthase A [Halorubrum saccharovorum DSM 1137]
gi|445690917|gb|ELZ43120.1| tRNA pseudouridine synthase A [Halorubrum saccharovorum DSM 1137]
Length = 291
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 115/268 (42%), Gaps = 38/268 (14%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ- 60
A AY G Y G Q R T+EG ++ AL + G + D + P +
Sbjct: 10 AFRVAYDGREYAGFQ----------RQPHATTVEGTLLRALAEHGIL--DRGDGPTHATP 57
Query: 61 --FQRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ A RTD GVSA+ Q V+ P+ A N HLP +R+ + F++ ++
Sbjct: 58 PGYAAAGRTDAGVSAVAQTVAFAAPDWLTPRAFNGHLPGSVRVWAAADAPTDFHATHDAV 117
Query: 119 ARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSC 178
RTY Y YA A D+ + D AL++ + G H+FHN TS
Sbjct: 118 RRTYRYHL--YAPARGDGADRDYAV--DDGRVRDALVR-FSGEHDFHNLTSDET----GT 168
Query: 179 SRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFG 238
+R D +DG +L+ +++ F +R++VG A+ RG LI++
Sbjct: 169 TR-----DLTASATRDG-DLLVVEVSAGGFPRALVRRIVGAVRAVGRGAADPSLIDRLLA 222
Query: 239 LDQFDLPMAPGLG------LLLEQVHYD 260
+ +P G+G L+L V Y+
Sbjct: 223 PEP--VPGERGVGPAPPEPLVLWDVRYE 248
>gi|344210745|ref|YP_004795065.1| tRNA pseudouridine synthase A [Haloarcula hispanica ATCC 33960]
gi|343782100|gb|AEM56077.1| tRNA pseudouridine synthase A [Haloarcula hispanica ATCC 33960]
Length = 275
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 115/262 (43%), Gaps = 33/262 (12%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G Y G Q R + T+EG + AL + G V E P+ +
Sbjct: 3 AYRVAYDGRPYHGFQ----------RQPDVDTVEGRLRSALVRLG-VCERGDGLPEC--Y 49
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSA Q V+ P + A N LP+ IR+ + V++GF++ ++ RT
Sbjct: 50 AAAGRTDAGVSARAQTVAFDAPAWLSPAAFNGELPDDIRVWASVDVSEGFHATHDATERT 109
Query: 122 YSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRY 181
Y+Y Y +A P D D P + G+H+FHN TS D + +
Sbjct: 110 YTY----YLYA-PTDA-DRLGREPVNDERWGEAVDALAGSHDFHNLTS-----DDTGTER 158
Query: 182 IMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQ 241
+ D + +DG + + +++ F +R++V +A A+A G +++ +
Sbjct: 159 TVDID----WTRDG-QFLVVRLTAGGFCRQLVRRLVSLAAAVADGSAQLSKVDRILSPES 213
Query: 242 FD----LPMAPGLGLLLEQVHY 259
+P AP L+L V Y
Sbjct: 214 ASGPDGVPPAPPEPLVLTDVRY 235
>gi|356577897|ref|XP_003557058.1| PREDICTED: putative tRNA pseudouridine synthase-like [Glycine max]
Length = 518
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 97/208 (46%), Gaps = 30/208 (14%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ M Y G + GLQ + + TIE ++ A+F AG + + +F ++
Sbjct: 76 VVMRVGYVGTNFRGLQMQR-------DEHRLSTIEKELETAIFMAGGMRDSNFGDLNKVK 128
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANK---------EAINEHLPEQIRILSIKRVTK 109
+ R++RTDKGV +L I++ K+ PE A K IN +LP IRI SI TK
Sbjct: 129 WGRSSRTDKGVHSLATIIAFKMEIPENAWKGDDYGIALANRINSYLPNTIRIFSILPSTK 188
Query: 110 GFNSKNNCNARTYSYTCPTYAFATPQD-TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFT 168
F+ + CN R YSY P ++D+ +FN ++L +EG H FHN+T
Sbjct: 189 RFDPRRECNLRKYSYLLPADIIGIQSHFSQDEIDFHILEFN---SILNVFEGEHPFHNYT 245
Query: 169 SKRKPLDPSCSRYIMSFDCEQPFVKDGL 196
+ S+Y + Q DG+
Sbjct: 246 VR--------SKYRKKYQVRQSSGNDGM 265
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 8/150 (5%)
Query: 174 LDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLI 233
L+ S R + C + G + + + + G SFMLHQIRKMVG A+A+ R +D I
Sbjct: 342 LNASHFRKVFRCSCGKLETSLGYDYVEVHVWGDSFMLHQIRKMVGTAVAVKRNLIPRDAI 401
Query: 234 EKTFGLDQFD---LPMAPGLGLLLEQVHYDLYNQ--KYGQDGMHESLHFHEVDKEVNEFR 288
L +F P+AP L+L + + + + M + + K +EF
Sbjct: 402 --LLSLSKFSRIVFPLAPPEVLILRGNAFKMRASAGNFTRQEMVSMVESEPILKAADEFY 459
Query: 289 HKFILPYLVK-TEITEKPMLAWLELLADHS 317
+LP + K + + P W+E L +S
Sbjct: 460 TSVVLPEVSKFLDSSSSPWAKWVENLDKYS 489
>gi|448668269|ref|ZP_21686400.1| tRNA pseudouridine synthase A [Haloarcula amylolytica JCM 13557]
gi|445768351|gb|EMA19436.1| tRNA pseudouridine synthase A [Haloarcula amylolytica JCM 13557]
Length = 275
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 114/262 (43%), Gaps = 33/262 (12%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G Y G Q R + T+EG + AL + G V E P+ ++
Sbjct: 3 AYRVAYDGRPYHGFQ----------RQPDVDTVEGRLRSALVRLG-VCERGDGLPE--RY 49
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSA Q V+ P + A N LP+ IR+ + V GF++ ++ RT
Sbjct: 50 AAAGRTDAGVSARAQTVAFDAPAWLSPAAFNGELPDDIRVWASADVPDGFHATHDAAERT 109
Query: 122 YSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRY 181
Y+Y Y +A P DT D + A + G H+FHN T+ D + +
Sbjct: 110 YTY----YLYA-PTDTDRPGHRPVDDERWADA-VDALAGPHDFHNLTA-----DDTGTER 158
Query: 182 IMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQ 241
+ D + +DG + + +++ F +R++V +A +A G +++ +
Sbjct: 159 TVDID----WTRDG-QFLVVRLTAGGFCRQLVRRLVSLAATVADGSAQLSKVDRILSPES 213
Query: 242 FD----LPMAPGLGLLLEQVHY 259
+P AP L+L V Y
Sbjct: 214 VSGPDGVPPAPPEPLVLTDVRY 235
>gi|83409929|emb|CAI64350.1| tRNA pseudouridine synthase A [uncultured archaeon]
Length = 276
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/305 (26%), Positives = 131/305 (42%), Gaps = 53/305 (17%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G Y G Q + + TIE ++ L + +T+ P++ +
Sbjct: 3 IALKIAYIGTEYHGYQIQ----------PDVPTIEKELFRTLEELKIITD-----PKSAR 47
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ + RTD GV+AL Q+V+ P+ A IN LP I + S V F+ + +
Sbjct: 48 YIGSGRTDAGVNALGQVVAFNTDNPKLAIPRVINSKLPPSIWVWSRAEVPDDFDPRRHAV 107
Query: 119 ARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSC 178
+R Y Y + L+ K GTH+F NF + +D S
Sbjct: 108 SREYKYFVCGECL---------------NISLLRKASKLLRGTHDFANFATPD--MDKST 150
Query: 179 SRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFG 238
R + D ++ LI L IK SF+ H +RK+V + + +++
Sbjct: 151 VRTVERID-----IRVEGRLINLDIKADSFVWHMVRKIVTALRMVGDQTREVEWLKRMLH 205
Query: 239 LDQFD--LPMAPGLGLLLEQVHYDL--------YNQKYGQDGMHES-LHF---HEVDKEV 284
D+F+ L AP GLLL+ V+YD+ Y +K + +HE +H+ EV KE+
Sbjct: 206 PDEFEEGLEPAPACGLLLKNVNYDMDIPWEDDSYAKKVSAERLHEQFMHYGAMAEVFKEL 265
Query: 285 NEFRH 289
+ H
Sbjct: 266 KDNMH 270
>gi|448124451|ref|XP_004204922.1| Piso0_000208 [Millerozyma farinosa CBS 7064]
gi|358249555|emb|CCE72621.1| Piso0_000208 [Millerozyma farinosa CBS 7064]
Length = 432
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 126/285 (44%), Gaps = 59/285 (20%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ FAY G Y GL +Y + T+E +I++AL KA + P +
Sbjct: 77 IAIKFAYLGWNYSGLSFQY-------EPTPLPTVEEEILKALEKAKLIPAVD---PLSCD 126
Query: 61 FQRAARTDKGVSALKQIVSLKL-----PEEANKEA-----------INEHLPEQIRILSI 104
R RTD+GVSA+ Q++SL + PEE + + +N LP IR+ ++
Sbjct: 127 LSRCGRTDRGVSAMNQVMSLTVRSNLAPEEQDSTSNDGRELPYLAILNSLLPPDIRVTAV 186
Query: 105 K-RVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHN 163
FN++ +C R Y Y F P D + K+YEG H+
Sbjct: 187 CLHPPPDFNARFSCLYRHYRY------FFRPHDL---------DVELMSKAAKKYEGVHD 231
Query: 164 FHNFTSKRKPLDPS-----CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVG 218
F NF +D S R I+S D P+ EL L++KG +F+ HQ+R M
Sbjct: 232 FRNFCK----IDGSKQITNYKREILSADV-LPY---NDELYMLELKGTAFLWHQVRCMAA 283
Query: 219 VAMAIARGFTSKDLIEKTFGLDQF----DLPMAPGLGLLLEQVHY 259
V + + S D+I++ +D++ + MA + L+L Y
Sbjct: 284 VLFLVGQKHESIDVIDELLNVDKYPSKPNFEMANDIPLVLFDCAY 328
>gi|300175206|emb|CBK20517.2| unnamed protein product [Blastocystis hominis]
Length = 282
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 62/108 (57%), Gaps = 2/108 (1%)
Query: 151 LQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPF-VKDGLELITLKIKGQSFM 209
L+A + + GTHNFHN+T + D S R+I+ P + DGL I + ++GQSFM
Sbjct: 168 LRACMSLFVGTHNFHNYTVGKSSADSSAQRHILGISVSDPIRIHDGL-YIRVCLEGQSFM 226
Query: 210 LHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQV 257
LHQIRKM+G+A+ +ARG S + + PMAP GL L V
Sbjct: 227 LHQIRKMIGIAIEVARGRCSLHTVNSSLSRGTMFTPMAPSTGLFLSMV 274
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 25/44 (56%)
Query: 84 EEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCP 127
EE + IN LP IR+ I R TK FN+KN C+ R Y Y P
Sbjct: 19 EEETVDRINSCLPSDIRVFKILRTTKNFNAKNFCDRRQYEYILP 62
>gi|213401667|ref|XP_002171606.1| tRNA pseudouridine synthase [Schizosaccharomyces japonicus yFS275]
gi|211999653|gb|EEB05313.1| tRNA pseudouridine synthase [Schizosaccharomyces japonicus yFS275]
Length = 453
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 1/177 (0%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELIT 200
+R++ + F Q ++Y G HNFHNFT + S RYI S +PFV E +
Sbjct: 267 YRVSSTRLAFFQKACEEYIGNHNFHNFTVNQDAASRSSWRYIHSIQLGKPFVYKEWEWVP 326
Query: 201 LKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYD 260
+ + GQSFMLHQIRKM+ A+ + R + K F ++ +PG LLL +
Sbjct: 327 VFLHGQSFMLHQIRKMLAHAIMVVRTAAPISCVTKAFTETPLNISRSPGHVLLLRNPVFS 386
Query: 261 LYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHS 317
Q + G +E +HF E + + + P + + E E+ +L H+
Sbjct: 387 NIPQDWKDKG-YEDIHFDEHANAMEKLADTQVFPQMFEIEQKEQMFYNFLSYANAHA 442
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 22/144 (15%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ YSG Y G+Q N TIE +++ G + + + +I
Sbjct: 43 IAVLLGYSGTKYHGIQ----------LNNPHATIERVVLDVFQALGLIRDTDAD---HIS 89
Query: 61 FQRAARTDKGVSALKQIVSLKLP-------EEANKEAINEHLPEQIRILSIKRVTKGFNS 113
RAARTDKGV AL +VS + E A + +NE LPE IR+ + +V FN
Sbjct: 90 LSRAARTDKGVHALGNVVSFLVSNFTFTGKELATR--LNEKLPEDIRVWDVLKVPMSFNP 147
Query: 114 KNNCNARTYSYTCPTYAFATPQDT 137
+ C++R Y Y P++A P+ T
Sbjct: 148 RLCCDSRLYEYYLPSFALIPPRTT 171
>gi|448577055|ref|ZP_21642773.1| tRNA pseudouridine synthase A [Haloferax larsenii JCM 13917]
gi|445728179|gb|ELZ79786.1| tRNA pseudouridine synthase A [Haloferax larsenii JCM 13917]
Length = 278
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 112/263 (42%), Gaps = 35/263 (13%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G Y G Q R + T+E +++A G D+ + +
Sbjct: 3 AFRVAYDGRPYHGFQ----------RQPDVPTVEDTLLDACRTLGICDADAVP----VGY 48
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
+ RTD GVSAL Q V+ + PE A+N LP IR + V F+++++ + R
Sbjct: 49 AASGRTDAGVSALAQTVAFECPEWCTPRALNAELPGTIRAWAAADVPDDFHARHHPSRRE 108
Query: 122 YSYTCPTYAFATPQDTKDDFRLTPDQFNFLQA-LLKQYEGTHNFHNFTSKRKPLDPSCSR 180
Y Y P D DD L F+ L A + + G H+FHN T P
Sbjct: 109 Y-----VYDLHAPSDAVDD-DLAATVFDDLAATVFDELCGEHDFHNLT-------PDEVG 155
Query: 181 YIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD 240
+ + D E +DG + + +I+ F +R++V + AIA G ++ ++ F +
Sbjct: 156 TVRTLDGE--VWRDG-DFLLFRIEAGGFARELVRRVVSLVRAIATGAAPREKLDHVFSSE 212
Query: 241 QFD----LPMAPGLGLLLEQVHY 259
+P AP L+L V Y
Sbjct: 213 HLQGPDGVPPAPPTPLVLTAVDY 235
>gi|429192213|ref|YP_007177891.1| pseudouridylate synthase [Natronobacterium gregoryi SP2]
gi|448325611|ref|ZP_21514997.1| tRNA pseudouridine synthase A [Natronobacterium gregoryi SP2]
gi|429136431|gb|AFZ73442.1| pseudouridylate synthase [Natronobacterium gregoryi SP2]
gi|445614976|gb|ELY68639.1| tRNA pseudouridine synthase A [Natronobacterium gregoryi SP2]
Length = 303
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 111/265 (41%), Gaps = 32/265 (12%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G Y+G Q R + T+E I EAL + D+ + +
Sbjct: 18 AFRIAYDGTDYYGYQ----------RQPSVPTVEDAIFEALRSLEVLAPDAE---KPTGY 64
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD+GVSAL Q + L+ P+ A N LP +R + +GF++ ++ R
Sbjct: 65 AAAGRTDRGVSALAQTIGLETPDWLTPRAFNAALPADVRAWASADAPEGFHATHHATRRE 124
Query: 122 YSYTCPTYAFATPQDTKDDFRLTPDQF---NFLQALLKQYEGTHNFHNFTSKRKPLDPSC 178
Y+Y +A P D L +QA + G+H++HN T DP
Sbjct: 125 YTYQL----YAPPADGGTSRSLESSDCVDDELVQAACRALSGSHDYHNLTPDD---DPDR 177
Query: 179 SRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFG 238
+ +S + ++DG + + + + F +R++V + I G + + +++ F
Sbjct: 178 TERTLSIEA----IRDG-DYLVVTVAADGFAHQLVRRLVSLVQEIGTGASPLEKVDRVFS 232
Query: 239 LDQFDLP----MAPGLGLLLEQVHY 259
+ P AP L+L V Y
Sbjct: 233 PEPLPGPEGVAPAPPEPLVLTGVAY 257
>gi|440298431|gb|ELP91067.1| tRNA pseudouridine synthase, putative [Entamoeba invadens IP1]
Length = 364
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 119/283 (42%), Gaps = 53/283 (18%)
Query: 1 MAMMFAYSGVGYFGLQSKYLF---FLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+A+ +Y G+GY G S L + + Q TIE + ++LFK + N+ +
Sbjct: 38 IAVHLSYVGIGYCGFASSTLNEANLTNYQKLQNDNTIEYYLFQSLFKTKLI-----NSKE 92
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPEEANKEAI---------------NEHLPEQIRIL 102
+ ++ R RTDK VS Q++ L + + I N LP IR L
Sbjct: 93 DCKYSRCGRTDKDVSGFGQVIDLWVRSSLKTDIIDYTQHDGDYDYCRMINSTLPVDIRCL 152
Query: 103 SIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNF--LQALLKQYEG 160
V FNS+ +C +RTY Y P ++ ++ + + G
Sbjct: 153 GWCGVPDDFNSRFSCLSRTYHY-----------------YFDPSGYDVEAMKQAAQYFVG 195
Query: 161 THNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVA 220
H+F NF K+ P C+R ++SF+ E P L +KG +F+ HQ+R MVG
Sbjct: 196 EHDFTNF-CKKDPAVDHCNRKVLSFEIE-PVT----HLSRFVVKGTAFLWHQVRYMVGAL 249
Query: 221 MAIARGFTSKDLIEKTFGLDQFDLP----MAPGLGLLLEQVHY 259
+ G T I+ ++ F P AP L+L + Y
Sbjct: 250 FLVGSG-TDPKTIKDLLDVNNFTKPDFFKYAPAYPLVLFKCEY 291
>gi|222480083|ref|YP_002566320.1| tRNA pseudouridine synthase A [Halorubrum lacusprofundi ATCC 49239]
gi|222452985|gb|ACM57250.1| tRNA pseudouridine synthase [Halorubrum lacusprofundi ATCC 49239]
Length = 293
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 116/266 (43%), Gaps = 34/266 (12%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ- 60
A AY G Y G Q R T+EG ++ AL K G + D + P +
Sbjct: 10 AFRVAYDGREYAGFQ----------RQPHATTVEGTLLRALAKHGIL--DRGDGPTHATP 57
Query: 61 --FQRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ A RTD GVSA+ Q V+ + P+ A N HLP +R+ + V GF++ ++
Sbjct: 58 PGYAAAGRTDAGVSAVAQTVAFEAPDWLTPRAFNGHLPGSVRVWAAADVPAGFHATHDAV 117
Query: 119 ARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSC 178
RTY Y YA A ++T D + D AL + G +FHN TS +
Sbjct: 118 RRTYRYHL--YAPARVEETDHDHAV--DDGRVRDALAR-LSGEQDFHNLTSD----ETGT 168
Query: 179 SRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFG 238
R D ++G +++ +++ F +R++V A+ RG LI++
Sbjct: 169 VR-----DLTTTATREG-DILVVEVSAGGFPRALVRRLVAAVRAVGRGTADPSLIDRLLA 222
Query: 239 LD----QFDLPMAPGLGLLLEQVHYD 260
+ +F + AP L+L V Y+
Sbjct: 223 SEPISGEFGIGPAPPEPLVLWDVSYE 248
>gi|190346281|gb|EDK38328.2| hypothetical protein PGUG_02426 [Meyerozyma guilliermondii ATCC
6260]
Length = 431
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 113/262 (43%), Gaps = 55/262 (20%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ FAY+G Y GL + + T+E +I+EAL KA +TE P
Sbjct: 72 IALRFAYAGWNYNGLAFQN-------EPTPLPTVEQEILEALTKARLITEPD---PLVCN 121
Query: 61 FQRAARTDKGVSALKQIVSLKL-----------PEEANKE-----AINEHLPEQIRILSI 104
F R RTDKGVSA+ Q++SL++ P KE +N LP IRI I
Sbjct: 122 FSRCGRTDKGVSAMNQVISLEVRSGLTEEQRSQPGADQKEIPYITILNSLLPPSIRITGI 181
Query: 105 -KRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHN 163
GF+++ +C+ R Y Y FR + K+YEG H+
Sbjct: 182 CLNPPPGFDARFSCSYRHYRYI---------------FRRYDLDLEAMTEAAKKYEGEHD 226
Query: 164 FHNFTSKRKPLDPS-----CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVG 218
F NF +D S R I+S + P D +KG +F+ HQ+R M+G
Sbjct: 227 FRNFCK----IDGSKQITNYGRTILSANI-MPLKDD---YYVFDLKGTAFLWHQVRCMMG 278
Query: 219 VAMAIARGFTSKDLIEKTFGLD 240
+ + R L+++ +D
Sbjct: 279 ILFLVGRKLEKPSLVDELLNVD 300
>gi|146417456|ref|XP_001484697.1| hypothetical protein PGUG_02426 [Meyerozyma guilliermondii ATCC
6260]
Length = 431
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 113/262 (43%), Gaps = 55/262 (20%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ FAY+G Y GL + + T+E +I+EAL KA +TE P
Sbjct: 72 IALRFAYAGWNYNGLAFQN-------EPTPLPTVEQEILEALTKARLITEPD---PLVCN 121
Query: 61 FQRAARTDKGVSALKQIVSLKL-----------PEEANKE-----AINEHLPEQIRILSI 104
F R RTDKGVSA+ Q++SL++ P KE +N LP IRI I
Sbjct: 122 FSRCGRTDKGVSAMNQVISLEVRSGLTEEQRSQPGADQKEIPYITILNSLLPPSIRITGI 181
Query: 105 -KRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHN 163
GF+++ +C+ R Y Y FR + K+YEG H+
Sbjct: 182 CLNPPPGFDARFSCSYRHYRYI---------------FRRYDLDLEAMTEAAKKYEGEHD 226
Query: 164 FHNFTSKRKPLDPS-----CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVG 218
F NF +D S R I+S + P D +KG +F+ HQ+R M+G
Sbjct: 227 FRNFCK----IDGSKQITNYGRTILSANI-MPLKDD---YYVFDLKGTAFLWHQVRCMMG 278
Query: 219 VAMAIARGFTSKDLIEKTFGLD 240
+ + R L+++ +D
Sbjct: 279 ILFLVGRKLEKPSLVDELLNVD 300
>gi|356499004|ref|XP_003518334.1| PREDICTED: putative tRNA pseudouridine synthase-like [Glycine max]
Length = 516
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 90/184 (48%), Gaps = 22/184 (11%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ M Y G + GLQ + + T+E ++ A+F AG + + +F ++
Sbjct: 77 VVMRVGYVGTDFRGLQMQR-------DEHRLSTVEKELETAIFTAGGMRDSNFGDLNKVK 129
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANK---------EAINEHLPEQIRILSIKRVTK 109
+ R++RTDKGV +L +++ K+ PE A K IN +LP IR+ SI TK
Sbjct: 130 WGRSSRTDKGVHSLATMIAFKMEIPENAWKGDDYGIVLANRINSYLPNTIRVFSILPSTK 189
Query: 110 GFNSKNNCNARTYSYTCPTYAFATPQD-TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFT 168
F+ + CN R YSY P ++D+ +FN ++L +EG H FHN+T
Sbjct: 190 RFDPRRECNLRKYSYLLPAGIIGIQSHFSQDEIDFHISEFN---SILNVFEGEHPFHNYT 246
Query: 169 SKRK 172
+ K
Sbjct: 247 VRSK 250
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 8/150 (5%)
Query: 174 LDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLI 233
L+ S R + C + G + I + I G SFMLHQIRKMVG A+A+ R +D I
Sbjct: 340 LNASHFRKVFRCSCGKLETSLGYDYIEVHIWGDSFMLHQIRKMVGTAVAVKRNLIPRDAI 399
Query: 234 EKTFGLDQFD---LPMAPGLGLLLEQVHYDLYNQ--KYGQDGMHESLHFHEVDKEVNEFR 288
L +F LP+AP L+L + + + + M + ++ + V+EF
Sbjct: 400 --LLSLSKFSRIVLPLAPPEVLILRGNAFKMRASAGNFTRQEMVSMVESEQILEAVDEFY 457
Query: 289 HKFILPYLVK-TEITEKPMLAWLELLADHS 317
+LP + K + + P W+E L +S
Sbjct: 458 TSVVLPEVSKFLDSSNSPWAKWVENLDKYS 487
>gi|357491363|ref|XP_003615969.1| Pseudouridylate synthase [Medicago truncatula]
gi|355517304|gb|AES98927.1| Pseudouridylate synthase [Medicago truncatula]
Length = 483
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 91/184 (49%), Gaps = 26/184 (14%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ M Y G + GLQ I + + TIE ++ A+FK G + + ++ I
Sbjct: 59 VVMRVGYIGTDFRGLQ-------IQRNDHKLSTIEKELETAIFKVGGIRDSNYGDLDKIN 111
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANK---------EAINEHLPEQIRILSIKRVTK 109
+ R++RTDKGV +L ++S K+ PE A K IN +LP IR+ S+ TK
Sbjct: 112 WGRSSRTDKGVHSLSTMISFKMEIPENAWKGDDYGIEMANHINSYLPNSIRVFSVLPSTK 171
Query: 110 GFNSKNNCNARTYSYTCPTYAFATP---QDTKDDFRLTPDQFNFLQALLKQYEGTHNFHN 166
F+ + C+ R YSY P + + DF ++ +FN ++L +EG H FHN
Sbjct: 172 RFDPRKECSMRKYSYLLPADIIGVQSHFSEDETDFHIS--EFN---SILGAFEGDHPFHN 226
Query: 167 FTSK 170
+T +
Sbjct: 227 YTVR 230
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 4/148 (2%)
Query: 174 LDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDL- 232
L+ S R I+ C + G I + + G SFMLHQIRKMVG A+A+ R KD+
Sbjct: 307 LNASHFRKILRCSCGKLETLLGYNYIEIDVWGDSFMLHQIRKMVGTAVAVKRNSIPKDIF 366
Query: 233 IEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQ--KYGQDGMHESLHFHEVDKEVNEFRHK 290
+ + LP+AP L+L + +++ Y + M + ++ K V+EF
Sbjct: 367 LLSLIKFSRIVLPIAPPEVLILRGNAFRMWSSGGSYTRPEMVSMVESEQILKSVDEFYTS 426
Query: 291 FILPYLVK-TEITEKPMLAWLELLADHS 317
+LP L K + ++ P W+E L +S
Sbjct: 427 VMLPELSKFLDSSKSPWADWVEKLDKYS 454
>gi|242040995|ref|XP_002467892.1| hypothetical protein SORBIDRAFT_01g035980 [Sorghum bicolor]
gi|241921746|gb|EER94890.1| hypothetical protein SORBIDRAFT_01g035980 [Sorghum bicolor]
Length = 520
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 97/189 (51%), Gaps = 32/189 (16%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGM-KTIEGDIMEALFKAGFVTEDSFNTPQNI 59
+ + Y G Y GLQ + R G+ TIE + A+FK+G + E ++ Q +
Sbjct: 79 VVLRIGYIGTEYRGLQKQ--------RELGVDSTIESVLESAIFKSGGILESNYGKLQKV 130
Query: 60 QFQRAARTDKGVSALKQIVSLKL--PEEANKEA---------INEHLPEQIRILSIKRVT 108
++R++RTDKGV +L ++SLK+ P+ A ++ IN +LP+ +R+ SI
Sbjct: 131 GWERSSRTDKGVHSLATMISLKMEIPDRAWEDDPDGIALASFINSNLPDNVRVFSILPAQ 190
Query: 109 KGFNSKNNCNARTYSYTCPTYAFA-----TPQDTKDDFRLTPDQFNFLQALLKQYEGTHN 163
+ F+ + C R Y Y P +P++ ++ +FN ++LK +EG H
Sbjct: 191 RSFDVRRECLYREYFYLLPAEVIGIKDGYSPEEIQEHL----SEFN---SILKGFEGNHP 243
Query: 164 FHNFTSKRK 172
FHN+T++ K
Sbjct: 244 FHNYTARAK 252
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 73/144 (50%), Gaps = 4/144 (2%)
Query: 174 LDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLI 233
L+ S R I++ C + G++ + L I G SFMLHQIRKMVG A+A+ RG KD+I
Sbjct: 339 LNASHFRDIITCSCGELQTSSGIQFVELTICGVSFMLHQIRKMVGTAVAVKRGLLPKDII 398
Query: 234 EKTFG-LDQFDLPMAPGLGLLLEQVHYDLYNQ--KYGQDGMHESLHFHEVDKEVNEFRHK 290
E + + LP+AP L+L+ + ++ + + G+ + K V EF
Sbjct: 399 ELSLAKFSRIVLPIAPSEVLILKDNSFCTKSKEGRIVRPGIQSMNKSAAIRKGVEEFYKA 458
Query: 291 FILPYLVK-TEITEKPMLAWLELL 313
+LP + K + P W+E L
Sbjct: 459 ALLPEVAKFLDPAVPPWKEWVENL 482
>gi|448612573|ref|ZP_21662595.1| tRNA pseudouridine synthase A [Haloferax mucosum ATCC BAA-1512]
gi|445741421|gb|ELZ92923.1| tRNA pseudouridine synthase A [Haloferax mucosum ATCC BAA-1512]
Length = 270
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 108/262 (41%), Gaps = 41/262 (15%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G + G Q R + T+E I +A G D+ T +
Sbjct: 3 AFRVAYDGRPFHGFQ----------RQPDVPTVEDTIFDACRALGVCDSDTDPT----AY 48
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSAL Q V+ + P+ A+N LP +R + V F++++ R
Sbjct: 49 AAAGRTDAGVSALAQTVAFECPDWCTPRALNSELPATVRAWASADVPDDFHARHRPTRRE 108
Query: 122 YSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRY 181
Y Y YA P D DD R A+L + G H+FHN T P
Sbjct: 109 YVYDL--YA---PTDEFDDDRAA--------AVLDELRGEHDFHNLT-------PDERGT 148
Query: 182 IMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQ 241
+ + D + +DG + + ++++ F +R++V + A+A G ++ G +
Sbjct: 149 VRAIDGD--LKRDG-DFLVIRVEAGGFARELVRRLVSLIRAVASGAAPTSKVDDVLGPEH 205
Query: 242 F----DLPMAPGLGLLLEQVHY 259
+P AP LLL V Y
Sbjct: 206 LGGPDGVPAAPPTPLLLTAVEY 227
>gi|365983330|ref|XP_003668498.1| hypothetical protein NDAI_0B02200 [Naumovozyma dairenensis CBS 421]
gi|343767265|emb|CCD23255.1| hypothetical protein NDAI_0B02200 [Naumovozyma dairenensis CBS 421]
Length = 439
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 86/325 (26%), Positives = 144/325 (44%), Gaps = 68/325 (20%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ FAY G Y GL + + T+EG I+EA++ + V PQ
Sbjct: 84 IALKFAYLGWNYNGLAMQK-------EATPLPTVEGKIIEAMYTSKLVPS---MVPQEYS 133
Query: 61 FQRAARTDKGVSALKQIVSLKL-----------PEEANKE-----AINEHLPEQIRILSI 104
F R RTDKGVSA+ Q++SLK+ PE +E +N+ LP+ IR+ ++
Sbjct: 134 FSRCGRTDKGVSAMSQVISLKVRSNLTDEEQKRPENDPREIRYVHILNQLLPDDIRVSAV 193
Query: 105 -KRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHN 163
R +GF+++ +C++R Y Y F + ++ +YEG H+
Sbjct: 194 CLRPPEGFDARFSCDSRHYKYL---------------FEADGLDISKMKEASSKYEGDHD 238
Query: 164 FHNFTSKRKPLDPS--CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAM 221
F NF LD S + + + + +G + + G++F+ HQ+R M+ +
Sbjct: 239 FRNFCK----LDGSKQITNHRRTIISAKILHVEG-NIYCFDLVGRAFLWHQVRCMMANLL 293
Query: 222 AIARGFTSKDLIEKTFGLDQ------FDLPMAPGLGLLL--------EQVHYDLYNQ--- 264
+ +G LIE +++ +D MA L LLL E + +L N
Sbjct: 294 LVGQGLEEVSLIEDMLDIEKTPQKPIYD--MADDLPLLLYDCKFPEMEWIESNLNNYDAV 351
Query: 265 KYGQDGMHESLHFHEVDKEVNEFRH 289
KYG+ +LH+ VN F++
Sbjct: 352 KYGKAVNALALHYQLKATIVNIFKN 376
>gi|406603476|emb|CCH45032.1| putative tRNA pseudouridine synthase [Wickerhamomyces ciferrii]
Length = 412
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 116/260 (44%), Gaps = 49/260 (18%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ F+Y G Y GL I + T+EG I+EAL K + S N P N
Sbjct: 61 IALKFSYLGWNYNGLA-------IQKEPTPLPTVEGTIIEALNKCKLIP--SLN-PGNFN 110
Query: 61 FQRAARTDKGVSALKQIVSLKL-----PEEA------NKE-----AINEHLPEQIRILSI 104
F R RTDKGVSAL Q++SLK+ PEE +KE +N LP I+I I
Sbjct: 111 FSRCGRTDKGVSALNQVISLKVRSNLTPEEQLDPNLDSKEFDYINILNGILPSDIKIHEI 170
Query: 105 K-RVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHN 163
R +GF+++ +C +R Y Y F +Q K YEG+H+
Sbjct: 171 SLRPPQGFDARFSCTSRHYKYL---------------FHQQGLDIELMQKAAKLYEGSHD 215
Query: 164 FHNFTSKRKPLDPS--CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAM 221
F NF +D S S Y + Q + G L ++G +F+ HQ+R MV +
Sbjct: 216 FRNFCK----IDGSKQISNYERTILKSQ-ILDLGNGLYCFDLEGSAFLWHQVRNMVAILF 270
Query: 222 AIARGFTSKDLIEKTFGLDQ 241
+ + S ++ + + +
Sbjct: 271 LVGQKLESPGIVTQLMNIQE 290
>gi|225434389|ref|XP_002276856.1| PREDICTED: putative tRNA pseudouridine synthase-like [Vitis
vinifera]
Length = 564
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 90/186 (48%), Gaps = 26/186 (13%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ M Y G Y GLQ + + TIEG++ A+FKAG + + ++ I
Sbjct: 65 VVMRVGYVGTNYRGLQMQR-------DESSLSTIEGELETAVFKAGGIRDSNYGNLHKIG 117
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEA---------INEHLPEQIRILSIKRVTK 109
+ R++RTDKGV +L ++SLK+ P A KE +N HLP I++ SI +
Sbjct: 118 WDRSSRTDKGVHSLATMISLKMEIPANAWKEDPNGIALANYVNFHLPNNIKVFSILPSQR 177
Query: 110 GFNSKNNCNARTYSYTCPTYAFATPQDTKD---DFRLTPDQFNFLQALLKQYEGTHNFHN 166
F+++ C+ R YSY P ++ D + +FN +L +EG H F N
Sbjct: 178 SFDARRECDLRRYSYLLPAEIIGIKSNSSASEIDHHIA--EFN---DILNTFEGEHPFQN 232
Query: 167 FTSKRK 172
+T + K
Sbjct: 233 YTIRSK 238
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 77/149 (51%), Gaps = 16/149 (10%)
Query: 177 SCSRYIMSFDCE----QPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDL 232
S S + F+C + F+ GL+ + L I G+SFMLHQIRKMVG A+A+ R +D+
Sbjct: 341 SASHFRKIFNCSCGKLEKFL--GLDYVELSICGESFMLHQIRKMVGTAIAVKRELLPRDI 398
Query: 233 IEKTFGLDQFD---LPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHF---HEVDKEVNE 286
+ T L +F LP+AP L+L + + +K G E L E+ K V+E
Sbjct: 399 L--TLSLTKFSRIVLPLAPSEVLILRGNSFSV-RKKPGNVKRPEMLTLMESEEILKSVDE 455
Query: 287 FRHKFILPYLVK-TEITEKPMLAWLELLA 314
F ILP + K + ++ P WLE L
Sbjct: 456 FYTSVILPQVSKFLDPSKSPWHDWLENLT 484
>gi|448454793|ref|ZP_21594273.1| tRNA pseudouridine synthase A [Halorubrum lipolyticum DSM 21995]
gi|445814476|gb|EMA64438.1| tRNA pseudouridine synthase A [Halorubrum lipolyticum DSM 21995]
Length = 292
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 116/270 (42%), Gaps = 42/270 (15%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ- 60
A AY G Y G Q R T+EG ++ AL + G + D + P +
Sbjct: 11 AFRVAYDGREYAGFQ----------RQPHATTVEGTLLRALAEHGIL--DRGDGPTHATP 58
Query: 61 --FQRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ A RTD GVSA+ Q V+ P+ A N HLP +R+ + V GF++ ++
Sbjct: 59 PGYAAAGRTDAGVSAVAQTVAFAAPDWLTPRAFNGHLPGSVRVWAAADVPDGFHATHDAT 118
Query: 119 ARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKR----KPL 174
RTY Y YA A D + ++ ++ L ++ G H+FHN TS + L
Sbjct: 119 RRTYRYHL--YAPARGDGADRDHAVDDER---VRDALARFSGEHDFHNLTSDEHGTVRDL 173
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
S +R +D +L+ +++ F +R++V A+ R LI+
Sbjct: 174 TASATR------------ED--DLLVVEVSAGGFPRALVRRLVAAVRAVGRSAADPSLID 219
Query: 235 KTFGLD----QFDLPMAPGLGLLLEQVHYD 260
+ L+ + + AP L+L V Y+
Sbjct: 220 RLLALEPVPGELGVGPAPPEPLVLWDVAYE 249
>gi|297745794|emb|CBI15850.3| unnamed protein product [Vitis vinifera]
Length = 495
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 93/187 (49%), Gaps = 28/187 (14%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG-MKTIEGDIMEALFKAGFVTEDSFNTPQNI 59
+ M Y G Y GLQ + R++ + TIEG++ A+FKAG + + ++ I
Sbjct: 65 VVMRVGYVGTNYRGLQMQ--------RDESSLSTIEGELETAVFKAGGIRDSNYGNLHKI 116
Query: 60 QFQRAARTDKGVSALKQIVSLKL--PEEANKEA---------INEHLPEQIRILSIKRVT 108
+ R++RTDKGV +L ++SLK+ P A KE +N HLP I++ SI
Sbjct: 117 GWDRSSRTDKGVHSLATMISLKMEIPANAWKEDPNGIALANYVNFHLPNNIKVFSILPSQ 176
Query: 109 KGFNSKNNCNARTYSYTCPTYAFATPQDTKD---DFRLTPDQFNFLQALLKQYEGTHNFH 165
+ F+++ C+ R YSY P ++ D + +FN +L +EG H F
Sbjct: 177 RSFDARRECDLRRYSYLLPAEIIGIKSNSSASEIDHHIA--EFN---DILNTFEGEHPFQ 231
Query: 166 NFTSKRK 172
N+T + K
Sbjct: 232 NYTIRSK 238
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 77/149 (51%), Gaps = 16/149 (10%)
Query: 177 SCSRYIMSFDCE----QPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDL 232
S S + F+C + F+ GL+ + L I G+SFMLHQIRKMVG A+A+ R +D+
Sbjct: 320 SASHFRKIFNCSCGKLEKFL--GLDYVELSICGESFMLHQIRKMVGTAIAVKRELLPRDI 377
Query: 233 IEKTFGLDQFD---LPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHF---HEVDKEVNE 286
+ T L +F LP+AP L+L + + +K G E L E+ K V+E
Sbjct: 378 L--TLSLTKFSRIVLPLAPSEVLILRGNSFSV-RKKPGNVKRPEMLTLMESEEILKSVDE 434
Query: 287 FRHKFILPYLVK-TEITEKPMLAWLELLA 314
F ILP + K + ++ P WLE L
Sbjct: 435 FYTSVILPQVSKFLDPSKSPWHDWLENLT 463
>gi|196007746|ref|XP_002113739.1| hypothetical protein TRIADDRAFT_26740 [Trichoplax adhaerens]
gi|190584143|gb|EDV24213.1| hypothetical protein TRIADDRAFT_26740, partial [Trichoplax
adhaerens]
Length = 279
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 124/291 (42%), Gaps = 63/291 (21%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGM-KTIEGDIMEALFKAGFVTEDSFNTPQNI 59
+A AY G Y+GL S+ +G+ KTIE ++ AL K + + N
Sbjct: 11 VAFKLAYIGWDYYGLASQ----------EGIEKTIEAELFNALTKTCLIENRT-----NS 55
Query: 60 QFQRAARTDKGVSALKQIVSLK---------------LPEEANKEAINEHLPEQIRILSI 104
+ R+ RTDKGVSAL Q++SL + E + + +N+ LP IRIL+
Sbjct: 56 NYSRSGRTDKGVSALGQVISLNVRTNLASGPGVIVETVSELSYVKLLNKVLPGDIRILAW 115
Query: 105 KRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNF 164
V F+++ N +RTY Y P + RL +G H+F
Sbjct: 116 APVDNDFSARFNTVSRTYKYYFPRANMNIEAMNEAAQRL---------------KGEHDF 160
Query: 165 HNFTSKRKPLDPSCSRYIMSF---DCEQPFV--KDGLELITLKIKGQSFMLHQIRKMVGV 219
NF + R I+S E P+V G E+ + + G++F+ HQ+R MV +
Sbjct: 161 RNFCKMDLANVSNFRREILSIKVQSIETPYVLQNQGFEMCEIIVCGKAFLWHQVRCMVAI 220
Query: 220 AMAIARGFTSKDLIEKTFGLDQFD----LPMAPG--------LGLLLEQVH 258
I +G ++I +++ + MA G LGLL + H
Sbjct: 221 LFLIGQGLEDANIINYMLDIEKCNKKPQYGMASGMRTYARSLLGLLSDDYH 271
>gi|147800604|emb|CAN68579.1| hypothetical protein VITISV_034891 [Vitis vinifera]
Length = 602
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 90/186 (48%), Gaps = 26/186 (13%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ M Y G Y GLQ + + TIEG++ A+FKAG + + ++ I
Sbjct: 65 VVMRVGYVGTNYRGLQMQR-------DESSLSTIEGELETAVFKAGGIRDSNYGNLHKIG 117
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEA---------INEHLPEQIRILSIKRVTK 109
+ R++RTDKGV +L ++SLK+ P A KE +N HLP I++ SI +
Sbjct: 118 WDRSSRTDKGVHSLATMISLKMEIPANAWKEDPNGIALANYVNFHLPNNIKVFSILPSQR 177
Query: 110 GFNSKNNCNARTYSYTCPTYAFATPQDTKD---DFRLTPDQFNFLQALLKQYEGTHNFHN 166
F+++ C+ R YSY P ++ D + +FN +L +EG H F N
Sbjct: 178 SFDARRECDLRRYSYLLPAEIIGIKSNSSASEIDHHIA--EFN---DILNTFEGEHPFQN 232
Query: 167 FTSKRK 172
+T + K
Sbjct: 233 YTIRSK 238
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 77/149 (51%), Gaps = 16/149 (10%)
Query: 177 SCSRYIMSFDCE----QPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDL 232
S S + F+C + F+ GL+ + L I G+SFMLHQIRKMVG A+A+ R +D+
Sbjct: 341 SASHFRKIFNCSCGKLEKFL--GLDYVELSICGESFMLHQIRKMVGTAIAVKRELLPRDI 398
Query: 233 IEKTFGLDQFD---LPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHF---HEVDKEVNE 286
+ T L +F LP+AP L+L + + +K G E L E+ K V+E
Sbjct: 399 L--TLSLTKFSRIVLPLAPSEVLILRGNSFSV-RKKPGNVKRPEMLTLMESEEILKSVDE 455
Query: 287 FRHKFILPYLVK-TEITEKPMLAWLELLA 314
F ILP + K + ++ P WLE L
Sbjct: 456 FYTSVILPQVSKFLDPSKSPWHDWLENLT 484
>gi|194697948|gb|ACF83058.1| unknown [Zea mays]
gi|414866704|tpg|DAA45261.1| TPA: hypothetical protein ZEAMMB73_241728 [Zea mays]
Length = 516
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 95/185 (51%), Gaps = 24/185 (12%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGM-KTIEGDIMEALFKAGFVTEDSFNTPQNI 59
+ + Y G Y GLQ + + G+ TIE + A+FK+G + E ++ Q I
Sbjct: 79 VVLRIGYVGTDYRGLQKQ--------QELGVDSTIESVLESAIFKSGGILESNYGKLQKI 130
Query: 60 QFQRAARTDKGVSALKQIVSLKL--PEEANKEA---------INEHLPEQIRILSIKRVT 108
++R++RTDKGV +L ++SLK+ P+ A ++ IN +LP+ +R+ SI
Sbjct: 131 GWERSSRTDKGVHSLATMISLKMEIPDRAWEDDPDGIALASFINSNLPDNVRVFSILPAQ 190
Query: 109 KGFNSKNNCNARTYSYTCPTYAFATPQD-TKDDFRLTPDQFNFLQALLKQYEGTHNFHNF 167
+ F+ + C R Y Y P D + ++ + +FN +LK +EG H FHN+
Sbjct: 191 RSFDVRRECLYREYFYLLPAEIIGIKDDYSSEEMQEHLSEFN---KILKGFEGNHPFHNY 247
Query: 168 TSKRK 172
T++ K
Sbjct: 248 TARAK 252
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 71/144 (49%), Gaps = 4/144 (2%)
Query: 174 LDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLI 233
L+ S R I++ C G++ + L I G SFMLHQIRKMVG A+ + RG +D+I
Sbjct: 340 LNASHFRDIITCSCGDLQTSSGIQFVELTICGVSFMLHQIRKMVGTAVTVKRGLLPRDII 399
Query: 234 EKTFG-LDQFDLPMAPGLGLLLEQVHYDLYNQ--KYGQDGMHESLHFHEVDKEVNEFRHK 290
E + + LP+AP L+L+ + ++ + + G+ K V EF
Sbjct: 400 ELSLAKFSRIVLPIAPSEVLVLKDNSFCTKSKGGRIVRPGIQSMNKSEATRKGVEEFYRA 459
Query: 291 FILPYLVK-TEITEKPMLAWLELL 313
+LP + K + + P WLE L
Sbjct: 460 ALLPEVAKFLDPSLPPWKEWLENL 483
>gi|300123845|emb|CBK25116.2| unnamed protein product [Blastocystis hominis]
Length = 282
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 61/108 (56%), Gaps = 2/108 (1%)
Query: 151 LQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPF-VKDGLELITLKIKGQSFM 209
L+A + + GTHNFHN+T + D S R+I+ P + DGL I + ++GQSFM
Sbjct: 168 LRACMSLFVGTHNFHNYTVGKSSADSSAQRHILGISVSDPIRIHDGL-YIRVCLEGQSFM 226
Query: 210 LHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQV 257
LHQIRKM+G+A+ +ARG S + PMAP GL L V
Sbjct: 227 LHQIRKMIGIAIEVARGRCSLHTANSSLSRGTMFTPMAPSTGLFLSMV 274
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 25/44 (56%)
Query: 84 EEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCP 127
EE + IN LP IR+ I R TK FN+KN C+ R Y Y P
Sbjct: 19 EEETVDRINSCLPSDIRVFKILRTTKNFNAKNFCDRRQYEYILP 62
>gi|51235381|gb|AAT98576.1| tRNA pseudouridine synthase [Pneumocystis carinii]
Length = 227
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 61/109 (55%), Gaps = 2/109 (1%)
Query: 28 NQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLP-EEA 86
N +TIEGD+ A G + E + + P+ RAARTD+GV A ++SLKL E+
Sbjct: 1 NDPNRTIEGDLFRAFVDTGGIAEMNADDPKKSSLNRAARTDRGVHAACNVLSLKLIIEQP 60
Query: 87 NK-EAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATP 134
N E INE LPE IR+ I R K FN + C AR Y Y P+Y F P
Sbjct: 61 NLLERINEALPETIRVWGISRTLKSFNPRTFCEARIYEYLVPSYVFIPP 109
>gi|448308199|ref|ZP_21498078.1| tRNA pseudouridine synthase A [Natronorubrum bangense JCM 10635]
gi|445594309|gb|ELY48471.1| tRNA pseudouridine synthase A [Natronorubrum bangense JCM 10635]
Length = 282
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 114/268 (42%), Gaps = 39/268 (14%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G GY+G Q R + T+E I +AL + D+ + P +
Sbjct: 3 AFRIAYDGTGYYGFQ----------RQPDVSTVEDTIFDALRSLDVLAPDA-DKPAG--Y 49
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSAL Q ++L+ P A+N LP +R + V F++ ++ RT
Sbjct: 50 AAAGRTDAGVSALAQTITLEGPAWLTPRALNAELPAAVRAWAFADVDDSFHATHDATRRT 109
Query: 122 YSYTCPTYAFATPQDTKDDFRLTPDQF------NFLQALLKQYEGTHNFHNFTSKRKPLD 175
Y+Y YA A DD TP + + A + TH+FHN T P D
Sbjct: 110 YTYHL--YAPA----AVDDSSATPAEIEHPIDDDRFHAACEALSDTHDFHNLT----PDD 159
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
+ R ++DG + + + + F +R++V +A +A G S I++
Sbjct: 160 HNTER-----SPTLSAIRDG-DYLVVTVTAGGFARELVRRLVSLAQTVATGAASFAKIDR 213
Query: 236 TFGLDQF----DLPMAPGLGLLLEQVHY 259
TF + + AP L+L V Y
Sbjct: 214 TFESEPLPGHEGIAPAPPEPLVLTDVDY 241
>gi|448474280|ref|ZP_21602139.1| tRNA pseudouridine synthase A [Halorubrum aidingense JCM 13560]
gi|445817587|gb|EMA67456.1| tRNA pseudouridine synthase A [Halorubrum aidingense JCM 13560]
Length = 288
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 107/266 (40%), Gaps = 44/266 (16%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTED---SFNTPQN 58
A AY G Y G Q R +T+EG ++ AL K G + + TP
Sbjct: 3 AFRVAYDGREYAGFQ----------RQPHARTVEGTLLRALAKHGILDRGEGPTHATPPG 52
Query: 59 IQFQRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ A RTD GVSAL Q V+ + P A N LP IR+ + V +GF++ ++
Sbjct: 53 --YAAAGRTDAGVSALAQTVAFEAPPWLTPRAFNGQLPGSIRVWAAADVREGFHATHDAV 110
Query: 119 ARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSC 178
RTY Y YA A D D L + G H+FHN TS
Sbjct: 111 ERTYRYHL--YAPAIDDDRVRD-------------ALTRLSGEHDFHNLTSDE------- 148
Query: 179 SRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFG 238
+ + + D L+ +++ F +R++V A+ RG T I++
Sbjct: 149 TGTVRNLTATATRAGD---LLVIELSAGGFPRALVRRVVSAVRAVGRGTTEPARIDRLLA 205
Query: 239 LD----QFDLPMAPGLGLLLEQVHYD 260
+ + +P AP L+L YD
Sbjct: 206 AEPVPGELGVPPAPAEPLVLWNAAYD 231
>gi|15606137|ref|NP_213514.1| pseudouridine synthase I [Aquifex aeolicus VF5]
gi|3929394|sp|O66953.1|TRUA_AQUAE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|2983318|gb|AAC06908.1| pseudouridine synthase I [Aquifex aeolicus VF5]
Length = 241
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 125/260 (48%), Gaps = 31/260 (11%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
+ A+ G ++G Q + ++T++G+I +AL + + ED ++
Sbjct: 6 LRLAFVGTNFYGWQVQ----------PNLRTVQGEIQKAL--SQILCED-------VKVT 46
Query: 63 RAARTDKGVSALKQIVSLK----LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
RTD GV AL I + K PEE +A+N LP+ + + ++K+V++ FN++ +
Sbjct: 47 GCCRTDSGVHALDYIANFKTQKDFPEEKLLKALNGILPKDVGVYAVKKVSEEFNARYSVK 106
Query: 119 ARTYSYTCPTYAFATPQDTKDDFRLTPD-QFNFLQALLKQYEGTHNFHNFTSKRKPLDPS 177
+ Y Y P +++ + L+ +LK++EGTH+F T + +
Sbjct: 107 GKVYLYKIWNSEVRNPFLYPFSWQVKREINTEVLRNILKKFEGTHDFRALTKLEEERNTV 166
Query: 178 CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTF 237
+ +S + E P LI +++K F+ + +R++VG A+ I+ G S++++E+
Sbjct: 167 INLEEVSLNVEYP-------LIEIRLKASHFLRYMVRRIVGTAVKISLGLYSEEVLEELL 219
Query: 238 GLDQFDLPMAPGLGLLLEQV 257
AP GL LE+V
Sbjct: 220 QGKGNSPYTAPPQGLHLEKV 239
>gi|294494718|ref|YP_003541211.1| tRNA pseudouridine synthase A [Methanohalophilus mahii DSM 5219]
gi|292665717|gb|ADE35566.1| tRNA pseudouridine synthase A [Methanohalophilus mahii DSM 5219]
Length = 273
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 124/296 (41%), Gaps = 49/296 (16%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G Y G Q + G+ TIEG I EAL ++ + ED P + +
Sbjct: 3 VALKIAYIGSSYRGSQVQ----------PGVSTIEGKIFEAL-QSLEIIED----PSSAR 47
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F + RTD GV A+ Q+V+ P+ A IN LP I S V F+ +
Sbjct: 48 FVSSGRTDTGVHAMGQVVAFDTDKPKLAIPRVINSKLPGDIWAWSRAEVDSDFHPRRYAI 107
Query: 119 ARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSC 178
RTY Y P+ + L+A EG+H+F NF + S
Sbjct: 108 NRTYRYITPS---------------MDADISKLRAACSILEGSHDFANFCFRDT--GRST 150
Query: 179 SRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFG 238
R I D V+ L+ + I SF+ IRK+V V + + G D +E
Sbjct: 151 IRRIEKID-----VRLAGNLLRIDITANSFLWKMIRKIVTVLLLVGSGARDLDWLENMLD 205
Query: 239 LDQFDLPMAPG--LGLLLEQVHY--------DLYNQKYGQDGMHESLHFHEVDKEV 284
++ + P GL+L V+Y D Y+ + ++ + E L +H+V EV
Sbjct: 206 PASYEEGIKPAKPYGLILTNVNYGDSVQWVDDGYSMRRSRERIEEYLVYHQVLAEV 261
>gi|328871318|gb|EGG19689.1| hypothetical protein DFA_00267 [Dictyostelium fasciculatum]
Length = 568
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 88/181 (48%), Gaps = 28/181 (15%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
M+FAY G GY GL+ +Q T+E + ALF +G + +F P + ++
Sbjct: 134 MLFAYVGTGYHGLE-------FHMTDQDYPTLENCLERALFLSGMILPTNFGDPSRLNWR 186
Query: 63 RAARTDKGVSALKQIVSLKL---------PEEANKEA--INEHLPEQIRILSIKRVTKGF 111
R++RTDKGV ++ I+ L PE+ IN +LP+ +RI+S++ K F
Sbjct: 187 RSSRTDKGVHSMSTIIKANLEIDRSRMLTPEKIADYVALINSNLPDALRIISMEMTKKSF 246
Query: 112 NSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKR 171
+ + ARTY Y P R T D+ N Q +L + G ++HNFT KR
Sbjct: 247 DPRRQGIARTYHYVLPKKYLGD--------RYTLDEIN--QIILPMFIGNFSYHNFTLKR 296
Query: 172 K 172
+
Sbjct: 297 R 297
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 12/129 (9%)
Query: 183 MSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQF 242
+SF E+ F + G E + I+G+SF+ +QIRKM+G +AI G T +E F
Sbjct: 378 ISFKLEETFQESGQEWVKFVIEGESFIQYQIRKMMGFVLAITNGKTDLKTLELALH-SPF 436
Query: 243 DL--PMAPGLGLLLEQVHYDL-YNQKYGQDGMHESLHFHEVDKEVNEFRHKF----ILPY 295
+ P+AP L L +D + QK + F + VN+F+ F + P+
Sbjct: 437 SIHAPIAPPNPLYL----FDCAFKQKRTAENSPLFHPFQLTNNRVNQFKKDFCSNTLYPH 492
Query: 296 LVKTEITEK 304
L + T++
Sbjct: 493 LKQLNDTQQ 501
>gi|255572341|ref|XP_002527109.1| pseudouridylate synthase, putative [Ricinus communis]
gi|223533532|gb|EEF35272.1| pseudouridylate synthase, putative [Ricinus communis]
Length = 438
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 81/295 (27%), Positives = 132/295 (44%), Gaps = 69/295 (23%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ Y G ++G S+ Q T+E +I +AL + + D + IQ
Sbjct: 104 VALKVMYFGQRFYGFSSE---------GQMDPTVESEIFKALERTRLLIGDK----KEIQ 150
Query: 61 FQRAARTDKGVSALKQIVSLKLP--------------EEANKE----------AINEHLP 96
+ R RTDKGVSA+ Q+++L L E A+++ +N LP
Sbjct: 151 YSRCGRTDKGVSAVGQVIALLLRSKVKDIDEIGKVFGETASQKHSEGEIDYVRVLNRVLP 210
Query: 97 EQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFL--QAL 154
IRI+ V F+++ +C +R Y Y FR D N L ++
Sbjct: 211 NDIRIIGWCPVPNDFSARFSCLSREYKYF---------------FR--GDNLNLLAMESA 253
Query: 155 LKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFD---CEQPFVKDGLELITLKIKGQSFMLH 211
K++ G H+F NF + R I SF+ C + + +G +L +KI+G +F+ H
Sbjct: 254 GKKFIGEHDFRNFCKMDAMNVHNYRRNITSFEISPCHERY--EGNQLFAIKIRGSAFLWH 311
Query: 212 QIRKMVGVAMAIARGFTSKDLIE------KTFGLDQFDLPMAPGLGLLLEQVHYD 260
Q+R MV V I +G S D+I+ +T Q+ PMAP + L+L ++
Sbjct: 312 QVRCMVAVLFMIGQGLESPDVIDVLLDTVRTPRKPQY--PMAPEIPLVLHSCDFE 364
>gi|374299433|ref|YP_005051072.1| tRNA pseudouridine synthase A [Desulfovibrio africanus str. Walvis
Bay]
gi|332552369|gb|EGJ49413.1| tRNA pseudouridine synthase A [Desulfovibrio africanus str. Walvis
Bay]
Length = 266
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 126/282 (44%), Gaps = 30/282 (10%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ + AY+G + GLQ + G +T++G++ L + N P I
Sbjct: 4 LKLTLAYTGTRFAGLQIQ----------PGCRTVQGEVEAVLARM-------LNGPVRID 46
Query: 61 FQRAARTDKGVSALKQIVSLKLPEE----ANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
AARTD GV AL Q+V L +PE ++AIN LP+ + + ++ V F+S+ +
Sbjct: 47 M--AARTDSGVHALGQVVHLDVPESKMRIPWRKAINALLPDDVCVTEVEVVPPEFHSRFS 104
Query: 117 CNARTYSYTCPT-YAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
++ Y+YT + F PQ +R+ + ++ + G H+F +F + P+
Sbjct: 105 ATSKVYAYTIWSELEFILPQRKPFVWRMAGLNQTAMDKAMQHFVGRHDFKSFQNVGTPIR 164
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
+ R + F E + E + +I+ F+ +R ++G +A+ RG + I
Sbjct: 165 DT-RRTVARFWREPG--QTQWETV-YRIQADGFLKQMVRNIIGCLVAVGRGKLCPNDIPA 220
Query: 236 TFGLDQFDL--PMAPGLGLLLEQVHYDLYNQKYGQDGMHESL 275
+ L P AP GL LE++ +D+ G E L
Sbjct: 221 LIAVRDRSLAPPTAPSRGLCLERIFFDVKADSTGSRPDEEEL 262
>gi|328350038|emb|CCA36438.1| pseudouridylate synthase [Komagataella pastoris CBS 7435]
Length = 422
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 88/321 (27%), Positives = 140/321 (43%), Gaps = 56/321 (17%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ F+Y G Y GL + + TIE I+EAL + + S N P +
Sbjct: 50 IALKFSYLGWNYQGLAVQR-------EATDLPTIEFKILEALRQCRMIP--SLN-PIDCA 99
Query: 61 FQRAARTDKGVSALKQIVSLKL-----------PEEANKE-----AINEHLPEQIRILSI 104
F R RTDKGVSA+ Q++ L + PE KE +N+ LP IRI +
Sbjct: 100 FSRCGRTDKGVSAMNQVIGLNVRSRLTPEELESPENDIKELDYINILNQLLPSDIRIHGV 159
Query: 105 K-RVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHN 163
R KGF+++ +C R Y Y QD D ++ +EG H+
Sbjct: 160 CLRPPKGFDARFSCRGRHYKYVF--------QDEGLDLE-------SMKKAAPMFEGVHD 204
Query: 164 FHNFTSKRKPLDPS--CSRYIMSFDCEQPFVKDGLE-LITLKIKGQSFMLHQIRKMVGVA 220
F NF +D + + Y + Q +G +KG +F+ HQ+R MV +
Sbjct: 205 FRNFCK----VDGAKQMTNYTRAVRSSQILPLEGHPGYYVFDLKGTAFLWHQVRCMVAIL 260
Query: 221 MAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQD-GMHESLHFHE 279
+ I +GF S D++ K LD P P + ++ + LY+ Y D + + ++
Sbjct: 261 LMIGQGFESPDIVSKL--LDIQSHPQKP-VYVMAHDIPLVLYDCIYDDDVNFQPATNANK 317
Query: 280 VDKEVNEFR---HKFILPYLV 297
+ K EFR + + L Y++
Sbjct: 318 ILKSHQEFRGVYYDYHLKYII 338
>gi|254565011|ref|XP_002489616.1| Non-essential tRNA:pseudouridine synthase [Komagataella pastoris
GS115]
gi|238029412|emb|CAY67335.1| Non-essential tRNA:pseudouridine synthase [Komagataella pastoris
GS115]
Length = 438
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 88/321 (27%), Positives = 140/321 (43%), Gaps = 56/321 (17%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ F+Y G Y GL + + TIE I+EAL + + S N P +
Sbjct: 66 IALKFSYLGWNYQGLAVQR-------EATDLPTIEFKILEALRQCRMIP--SLN-PIDCA 115
Query: 61 FQRAARTDKGVSALKQIVSLKL-----------PEEANKE-----AINEHLPEQIRILSI 104
F R RTDKGVSA+ Q++ L + PE KE +N+ LP IRI +
Sbjct: 116 FSRCGRTDKGVSAMNQVIGLNVRSRLTPEELESPENDIKELDYINILNQLLPSDIRIHGV 175
Query: 105 -KRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHN 163
R KGF+++ +C R Y Y QD D ++ +EG H+
Sbjct: 176 CLRPPKGFDARFSCRGRHYKYVF--------QDEGLDLE-------SMKKAAPMFEGVHD 220
Query: 164 FHNFTSKRKPLDPS--CSRYIMSFDCEQPFVKDGLE-LITLKIKGQSFMLHQIRKMVGVA 220
F NF +D + + Y + Q +G +KG +F+ HQ+R MV +
Sbjct: 221 FRNFCK----VDGAKQMTNYTRAVRSSQILPLEGHPGYYVFDLKGTAFLWHQVRCMVAIL 276
Query: 221 MAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQD-GMHESLHFHE 279
+ I +GF S D++ K LD P P + ++ + LY+ Y D + + ++
Sbjct: 277 LMIGQGFESPDIVSKL--LDIQSHPQKP-VYVMAHDIPLVLYDCIYDDDVNFQPATNANK 333
Query: 280 VDKEVNEFR---HKFILPYLV 297
+ K EFR + + L Y++
Sbjct: 334 ILKSHQEFRGVYYDYHLKYII 354
>gi|449664207|ref|XP_002153998.2| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Hydra
magnipapillata]
Length = 426
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 135/311 (43%), Gaps = 55/311 (17%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ F Y G Y GL ++ TIE I A+ KA + + +
Sbjct: 81 IALKFLYLGWDYQGLANQ---------ETTNNTIEDAIFNAMIKAKLIEDRVL-----CK 126
Query: 61 FQRAARTDKGVSALKQIVSLKL-------PEEANKEAI------NEHLPEQIRILSIKRV 107
+ R RTDKGVSA Q+++L + EE +E I N+ LP +IR+L+ RV
Sbjct: 127 YSRCGRTDKGVSAFGQVIALNVRSNTLVSEEEDTREEISYVRLLNKILPPEIRMLAFARV 186
Query: 108 TKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNF 167
+ F+++ +C+ R Y Y P A D K + A +++ G +F NF
Sbjct: 187 PQDFDARFDCDTRMYKYFFP----AKRMDIK-----------LMDAAAQKFVGEKDFRNF 231
Query: 168 TSKRKPLDPSCS-----RYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMA 222
+D + R I+SF + D +++ ++I G +F+ HQ+R MV V +
Sbjct: 232 CK----VDVGNNVNHFIRNIVSFKVQMLNNVDLVDICEMEITGLAFLWHQVRCMVAVLLL 287
Query: 223 IARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDK 282
I G ++I+ LD P P L E + LY+ Y D ++ +
Sbjct: 288 IGLGVEKPEIIDHL--LDVESCPKRPQYELASE-IPLVLYDCTYD-DKINWCYDIESNTQ 343
Query: 283 EVNEFRHKFIL 293
VN + KF +
Sbjct: 344 NVNILQKKFTI 354
>gi|315230173|ref|YP_004070609.1| tRNA pseudouridine synthase A [Thermococcus barophilus MP]
gi|315183201|gb|ADT83386.1| tRNA pseudouridine synthase A [Thermococcus barophilus MP]
Length = 266
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 118/263 (44%), Gaps = 41/263 (15%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G ++G Q R G++T+EG+I+ L K D +P+N
Sbjct: 3 IALKIAYDGSKFYGFQ----------RQPGLRTVEGEIIRVLQKL-----DVIESPENAN 47
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F+ A+RTD+GVSAL +++ P+ A +N HL I +L + +V+ F+ +
Sbjct: 48 FKGASRTDRGVSALGNVIAFNTENPKLAQPRVLNHHL-RDIWVLGVAQVSDDFHPRFWAK 106
Query: 119 ARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSC 178
++ Y Y F N ++ + + GTH+F F K DP
Sbjct: 107 SKIYRYYLVDEGFDV---------------NAMKECARLFVGTHDFSAFARVEKFKDP-- 149
Query: 179 SRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTF- 237
R + + + G +LI ++I+G+SF+ +R++V G + I K
Sbjct: 150 IREVNRLEI----IPRG-DLIIIEIEGKSFLWEMVRRIVTALKLCGFGIVETEDIRKMLE 204
Query: 238 GLDQFDLPMAPGLGLLLEQVHYD 260
G LP +P L+L ++ Y+
Sbjct: 205 GRTDKKLPPSPPENLVLWEIKYE 227
>gi|313125232|ref|YP_004035496.1| pseudouridylate synthase [Halogeometricum borinquense DSM 11551]
gi|448287171|ref|ZP_21478387.1| tRNA pseudouridine synthase A [Halogeometricum borinquense DSM
11551]
gi|312291597|gb|ADQ66057.1| pseudouridylate synthase I [Halogeometricum borinquense DSM 11551]
gi|445572917|gb|ELY27447.1| tRNA pseudouridine synthase A [Halogeometricum borinquense DSM
11551]
Length = 272
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 105/262 (40%), Gaps = 42/262 (16%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G ++G Q R + T+E I +AL G + ED+ + +
Sbjct: 3 AFRIAYDGRPFYGFQ----------RQPSVPTVEDSIFDALRSLGVLDEDAR---KPTGY 49
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSAL Q V+ PE A+N LPE +R + V + F++ ++ R
Sbjct: 50 AAAGRTDAGVSALAQTVAFDCPEWCTPRAMNAELPESVRAWAAADVGERFHATHDAARRA 109
Query: 122 YSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRY 181
Y Y +A D QA G H+FHN T P D R
Sbjct: 110 YVYDL----YAPEADESK-----------AQAAADALTGEHDFHNLT----PDDTGTVR- 149
Query: 182 IMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQ 241
D DG E + L + F + +R++ + ++A G IE G +
Sbjct: 150 ----DVTVSVEADG-EFLVLSVAAGGFPYNLVRRLASIVHSVATGDRPLADIETVLGPET 204
Query: 242 F----DLPMAPGLGLLLEQVHY 259
+P AP L+LE+V Y
Sbjct: 205 VPGPEGVPTAPAEPLVLERVVY 226
>gi|330835922|ref|XP_003292011.1| hypothetical protein DICPUDRAFT_156689 [Dictyostelium purpureum]
gi|325077781|gb|EGC31472.1| hypothetical protein DICPUDRAFT_156689 [Dictyostelium purpureum]
Length = 539
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 31/181 (17%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A+ F Y G G++GL + ++ K IE I +ALF G + + I++
Sbjct: 130 ALCFGYDGTGFYGLS--------YNKDLKYKAIENAIEKALFINGHIAPSNVGDLSRIKW 181
Query: 62 QRAARTDKGVSALKQIVS--LKLPEEANK---------EAINEHLPEQIRILSIKRVTKG 110
R++RTDKGV +L ++S + + E+ N+ E+IN+HLPE +R+LS R++K
Sbjct: 182 SRSSRTDKGVHSLSTLISCFILVDEKTNQREGLSKETIESINKHLPESVRLLSGTRISKS 241
Query: 111 FNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSK 170
F ++ RTY Y P ++ D N +L Y G ++HN+TS+
Sbjct: 242 FRARRGVCERTYHYMVPKKYLEG---------ISIDHMN---EILSNYIGNFSYHNYTSQ 289
Query: 171 R 171
R
Sbjct: 290 R 290
>gi|448654693|ref|ZP_21681619.1| tRNA pseudouridine synthase A [Haloarcula californiae ATCC 33799]
gi|445766541|gb|EMA17668.1| tRNA pseudouridine synthase A [Haloarcula californiae ATCC 33799]
Length = 275
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 114/262 (43%), Gaps = 33/262 (12%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G Y G Q R + T+EG + AL + G V E P ++
Sbjct: 3 AYRVAYDGQPYHGFQ----------RQPDVDTVEGRLRSALVRLG-VCERGEGLPD--RY 49
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSA Q V+ P + A N LP +R+ + V + F++ ++ RT
Sbjct: 50 AAAGRTDAGVSARTQTVAFDAPAWLSPAAFNGELPNDVRVWASADVPEDFHATHDAAERT 109
Query: 122 YSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRY 181
Y+Y Y +A P D D + A + GTH+FHN T+ D + +
Sbjct: 110 YTY----YLYA-PADADRPEHEPVDDGRWADA-VDALAGTHDFHNLTT-----DETGTER 158
Query: 182 IMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQ 241
++ D + +DG + + +++ F +R++V +A A+A G +++ +
Sbjct: 159 TVAID----WTRDG-QFLVVQLTAGGFCRQLVRRLVSLAAAVADGSAPLSKVDRILSPEP 213
Query: 242 FD----LPMAPGLGLLLEQVHY 259
+P AP L+L V Y
Sbjct: 214 VSGPDGVPPAPPEPLVLTDVRY 235
>gi|448641429|ref|ZP_21678039.1| tRNA pseudouridine synthase A [Haloarcula sinaiiensis ATCC 33800]
gi|445760843|gb|EMA12099.1| tRNA pseudouridine synthase A [Haloarcula sinaiiensis ATCC 33800]
Length = 275
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 114/262 (43%), Gaps = 33/262 (12%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G Y G Q R + T+EG + AL + G V E P ++
Sbjct: 3 AYRVAYDGQPYHGFQ----------RQPDVDTVEGRLRSALVRLG-VCERGEGLPD--RY 49
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSA Q V+ P + A N LP +R+ + V + F++ ++ RT
Sbjct: 50 AAAGRTDAGVSARTQTVAFDAPAWLSPAAFNGELPNDVRVWASADVPEDFHATHDAAERT 109
Query: 122 YSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRY 181
Y+Y Y +A P D D + A + GTH+FHN T+ D + +
Sbjct: 110 YTY----YLYA-PADADRPEHEPVDDGRWADA-VDALAGTHDFHNLTT-----DETGTER 158
Query: 182 IMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQ 241
++ D + +DG + + +++ F +R++V +A A+A G +++ +
Sbjct: 159 TVAID----WTRDG-QFLVVQLTAGGFCRQLVRRLVSLAAAVADGSAPLSKVDRILSPEP 213
Query: 242 FD----LPMAPGLGLLLEQVHY 259
+P AP L+L V Y
Sbjct: 214 VSGPDGVPPAPPEPLVLTDVRY 235
>gi|50309181|ref|XP_454596.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643731|emb|CAG99683.1| KLLA0E14345p [Kluyveromyces lactis]
Length = 444
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 116/267 (43%), Gaps = 51/267 (19%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A FAY G Y GL I + T+EG I+E + K V PQ +
Sbjct: 98 VAFKFAYLGWNYNGLA-------IQKDATPLPTVEGTILETMNKCKLVPS---MVPQEYK 147
Query: 61 FQRAARTDKGVSALKQIVSLKL-----------PEEANKE-----AINEHLPEQIRILSI 104
F R RTD+GVSA+ Q++SL++ P +KE +N+ LPE IR+ ++
Sbjct: 148 FSRCGRTDRGVSAMNQVISLRVRSNLTAEEQLDPSYDDKEIQYVNILNQILPEDIRVSAV 207
Query: 105 K-RVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHN 163
R KGF+++ +C +R Y Y + +Q K YEG H+
Sbjct: 208 CLRPPKGFDARFSCKSRHYKYLFSSEGL---------------DLERMQLAAKHYEGEHD 252
Query: 164 FHNFTSKRKPLDPS--CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAM 221
F NF LD S + Y + + ++ + G +F+ HQ+R MV
Sbjct: 253 FRNFCK----LDGSKQITNYKRTIKSSN-IMHVSEDMYCFDLVGSAFLWHQVRCMVANLF 307
Query: 222 AIARGFTSKDLIEKTFGLDQFDLPMAP 248
+ +G +LI++ +++ +P P
Sbjct: 308 LVGQGLEDPNLIKEMLDIEK--MPRKP 332
>gi|367000836|ref|XP_003685153.1| hypothetical protein TPHA_0D00760 [Tetrapisispora phaffii CBS 4417]
gi|357523451|emb|CCE62719.1| hypothetical protein TPHA_0D00760 [Tetrapisispora phaffii CBS 4417]
Length = 434
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 128/285 (44%), Gaps = 59/285 (20%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ F Y G Y GL + + TIEG ++EA+ K F+ S N P++ +
Sbjct: 89 VALKFCYLGWDYNGLALQK-------DKTPLPTIEGILLEAMKKCKFIP--SMN-PKDFK 138
Query: 61 FQRAARTDKGVSALKQIVSL----KLP-----------EEANKEAI-NEHLPEQIRILSI 104
F R RTDKGVSAL QI+SL +LP +E N AI N+ LP IRI ++
Sbjct: 139 FSRCGRTDKGVSALNQIISLDMRSELPPAEQVDANFDHKEINYTAILNQILPPAIRITAV 198
Query: 105 K-RVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHN 163
K F+++ NC +R Y Y F+L ++ K +EG ++
Sbjct: 199 CLNPPKDFDARFNCISRHYKYF---------------FKLDNLDITLMREAAKHFEGEND 243
Query: 164 FHNFTSKRKPLDPS-----CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVG 218
F NF LD S R I SFD + VK+ ++ I +F+ HQ+R MV
Sbjct: 244 FRNFCK----LDGSKQIKNYERTIFSFDISK--VKE--DIYCFDIIASAFLWHQVRYMVA 295
Query: 219 VAMAIARGFTSKDLIEKTFGLDQFD----LPMAPGLGLLLEQVHY 259
+ + + +++ ++++ MA L+L +Y
Sbjct: 296 ILFLVGQKLEPSSIVKDLLDVNKYPRKPIYDMAADFPLVLYDCNY 340
>gi|55379749|ref|YP_137599.1| tRNA pseudouridine synthase A [Haloarcula marismortui ATCC 43049]
gi|62901222|sp|Q5UXW0.1|TRUA_HALMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|55232474|gb|AAV47893.1| tRNA pseudouridine synthase A [Haloarcula marismortui ATCC 43049]
Length = 275
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 114/262 (43%), Gaps = 33/262 (12%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G Y G Q R + T+EG + AL + G V E P ++
Sbjct: 3 AYRVAYDGQPYHGFQ----------RQPDVDTVEGRLRSALVRLG-VCERGEGLPD--RY 49
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSA Q V+ P + A N LP +R+ + V + F++ ++ RT
Sbjct: 50 AAAGRTDAGVSARTQTVAFDAPAWLSPAAFNGELPNDVRVWASADVPEDFHATHDAAERT 109
Query: 122 YSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRY 181
Y+Y Y +A P D D + A + GTH+FHN T+ D + +
Sbjct: 110 YTY----YLYA-PADADRPEHEPVDDGRWADA-VDALAGTHDFHNLTT-----DETGTER 158
Query: 182 IMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQ 241
++ D + +DG + + +++ F +R++V +A A+A G +++ +
Sbjct: 159 TVAID----WTRDG-QFLVVQLTAGGFCRQLVRRLVSLAAAVADGSAPLSKVDRILSPEP 213
Query: 242 FD----LPMAPGLGLLLEQVHY 259
+P AP L+L V Y
Sbjct: 214 VSGPDGVPPAPPEPLVLTDVRY 235
>gi|448122103|ref|XP_004204367.1| Piso0_000208 [Millerozyma farinosa CBS 7064]
gi|358349906|emb|CCE73185.1| Piso0_000208 [Millerozyma farinosa CBS 7064]
Length = 430
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 117/264 (44%), Gaps = 55/264 (20%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ FAY G Y GL +Y + T+E +I++AL KA + P
Sbjct: 75 IAIKFAYLGWNYSGLSFQY-------EPAPLPTVEEEILKALEKAKIIPAVD---PLCCD 124
Query: 61 FQRAARTDKGVSALKQIVSLKL-----PEEANKEA-----------INEHLPEQIRILSI 104
R RTD+GVSA+ Q++SL + PEE + + +N LP IR+ ++
Sbjct: 125 LSRCGRTDRGVSAMNQVMSLTVRSNLAPEEQDSTSNDGRELPYLAILNSLLPPDIRVTAV 184
Query: 105 K-RVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHN 163
FN++ +C R Y Y F P D + K+YEG H+
Sbjct: 185 CLHPPPNFNARFSCLYRQYRY------FFRPHDL---------DVELMSKAAKKYEGVHD 229
Query: 164 FHNFTSKRKPLDPS-----CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVG 218
F +F +D S R I+S D P+ EL L++KG +F+ HQ+R M
Sbjct: 230 FRSFCK----IDGSKQITNYKREILSADV-LPYDD---ELYMLELKGTAFLWHQVRCMAA 281
Query: 219 VAMAIARGFTSKDLIEKTFGLDQF 242
V + + S D+I++ +D++
Sbjct: 282 VLFLVGQKHESIDVIDELLNVDKY 305
>gi|197122727|ref|YP_002134678.1| tRNA pseudouridine synthase A [Anaeromyxobacter sp. K]
gi|196172576|gb|ACG73549.1| tRNA pseudouridine synthase A [Anaeromyxobacter sp. K]
Length = 272
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 110/274 (40%), Gaps = 42/274 (15%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A+ AY G + G Q R G+ T++ + EAL + G Q
Sbjct: 7 ALRLAYDGGRFRGFQ----------RQPGLPTVQQALEEALERLGL----------RAQL 46
Query: 62 QRAARTDKGVSALKQIVSLK----LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNC 117
AARTD GV AL Q+VS L A + +NE LPE I +L RV F+++ +
Sbjct: 47 HVAARTDAGVHALAQVVSFSARAALDPAALRRGLNEGLPEGILVLDAARVGPSFHARGSA 106
Query: 118 NARTYSYTCPT--------YAFATPQDTK--DDFRLTPDQFNFLQALLKQYEGTHNFHNF 167
ARTY Y YA+ P D + P ++ L G H+F F
Sbjct: 107 IARTYVYLVGAPPPEGLRPYAWTLPDARAFPDLAEVPPLDAAAMREALGHAVGEHDFVGF 166
Query: 168 TSKRKPLDPSCSRYIMSFDCEQPFVKDGLE-LITLKIKGQSFMLHQIRKMVGVAMAIARG 226
P R + ++ G L+ + ++G+ F+ +R +VG A+A G
Sbjct: 167 AR------PGEQRGTVRTLLRAEVIEAGWAPLVAVVLEGKGFLRAMVRNLVGTAVAAGLG 220
Query: 227 FTSKDLIEKTFGL-DQFDLPMAPGLGLLLEQVHY 259
D+I ++ APG GL L V Y
Sbjct: 221 RAPPDVIRTLLATRGRYRGVRAPGWGLTLAAVRY 254
>gi|260891283|ref|ZP_05902546.1| tRNA pseudouridine synthase A [Leptotrichia hofstadii F0254]
gi|260858959|gb|EEX73459.1| tRNA pseudouridine synthase A [Leptotrichia hofstadii F0254]
Length = 250
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 125/267 (46%), Gaps = 30/267 (11%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ M++ Y G + G Q R + MKT++G+I A+FK +FN Q I
Sbjct: 6 LKMIYQYDGSKFCGFQ----------RQKKMKTVQGEIERAVFK-------TFN--QEIN 46
Query: 61 FQRAARTDKGVSALKQI----VSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ RTDKGV A++Q+ + +P EA K IN+ L ++++L ++ K FN++ +
Sbjct: 47 MISSGRTDKGVHAMEQVSNFVIDENIPIEAIKRQINKCLKGEVKVLEVEEAGKDFNARFD 106
Query: 117 CNARTYSYTCPTYAFATPQDTK--DDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
+RTY Y TP + R + F Q ++ + G ++F +F K K
Sbjct: 107 AKSRTYLYIMRNEEDITPFEANYVTGLRASVSVEKF-QEIMNDFVGKYDFSSFMKKDKAY 165
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
R I+ C K G + + ++I G F+ +R M+G A+A+ G +D I+
Sbjct: 166 RNPV-REIVYIKCYYD-EKIGQKQLNVEICGNGFLKTMVRIMIGSALAVYFGNVEEDYIK 223
Query: 235 KTFGLDQFDLP--MAPGLGLLLEQVHY 259
+ D +A GL L +V+Y
Sbjct: 224 RRLENPNADDKKILAASEGLYLYKVNY 250
>gi|308807767|ref|XP_003081194.1| Exopolyphosphatases and related proteins (ISS) [Ostreococcus tauri]
gi|116059656|emb|CAL55363.1| Exopolyphosphatases and related proteins (ISS) [Ostreococcus tauri]
Length = 813
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 115/281 (40%), Gaps = 54/281 (19%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG----MKTIEGDIMEALFKAGFVTE--DSFN 54
+A+ AY G Y G S QG T+E + EAL K V D F
Sbjct: 456 IALKVAYLGWPYRGFAS-----------QGPEATTPTVEWTLFEALAKTRLVAAAADVFK 504
Query: 55 TPQNIQFQRAARTDKGVSALKQIVSLKLPEEANKEA---------INEHLPEQIRILSIK 105
T + R RTD+GVS L QIV+L++ + +N LP +R L
Sbjct: 505 TAS---YARCGRTDRGVSGLGQIVTLQVRSNGASDPREELDYVGLLNRALPSDVRALGWA 561
Query: 106 RVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDF--RLTPDQFNFLQALLKQYEGTHN 163
V + N++ +C R Y Y F + T + + +EG H+
Sbjct: 562 PVDEELNARFDCKWRQYKY----------------FFEKTTALDLEAMGEAARAFEGVHD 605
Query: 164 FHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAI 223
F NF S +R ++ +C DG +L+ + ++G +F+ HQ+R M V +
Sbjct: 606 FRNFCRMDAENVKSFTRRVL--ECTIEEAGDG-KLMYINVRGTAFLWHQVRNMASVLFMV 662
Query: 224 ARGFTSKDLIEKTFGLDQF----DLPMAPGLGLLLEQVHYD 260
G ++E+ L++ PMAP LLL + YD
Sbjct: 663 GLGHEPPSVVERLLDLERTPRKPQYPMAPEESLLLWRSGYD 703
>gi|448493615|ref|ZP_21609127.1| tRNA pseudouridine synthase A [Halorubrum californiensis DSM 19288]
gi|445690170|gb|ELZ42390.1| tRNA pseudouridine synthase A [Halorubrum californiensis DSM 19288]
Length = 316
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 106/252 (42%), Gaps = 42/252 (16%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTE---DSFNTPQN 58
A AY G Y G Q R T+ ++EAL + G V + TP
Sbjct: 14 AFRVAYDGREYAGFQ----------RQPHAHTVADALLEALAEHGVVERGDGSTHATPPG 63
Query: 59 IQFQRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ A RTD GVSA+ Q V+ + P A N HLP +R+ + V GF++ ++
Sbjct: 64 --YAAAGRTDAGVSAVAQTVAFETPPWLTPRAFNGHLPGSVRVWAAADVEGGFHATHDAV 121
Query: 119 ARTYSYTCPTYAFATPQDTKDD------------FRLTPDQF---NFLQALLKQYEGTHN 163
RTY Y YA A D D+ R P+ L+A L Q++G H+
Sbjct: 122 RRTYRYHL--YAPAADGDGADEAPDAGRDRTAETARRDPEHAVDDERLRAALAQFDGEHD 179
Query: 164 FHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAI 223
FHN T+ + + D ++G L+ +++ F +R++V A A+
Sbjct: 180 FHNLTTDE-------TGTVRDLDTRA--TREGDALV-VEVAAGGFPRALVRRIVAAARAV 229
Query: 224 ARGFTSKDLIEK 235
RG + I++
Sbjct: 230 GRGTAEPEWIDR 241
>gi|399577836|ref|ZP_10771588.1| pseudouridylate synthase i [Halogranum salarium B-1]
gi|399237278|gb|EJN58210.1| pseudouridylate synthase i [Halogranum salarium B-1]
Length = 280
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 112/262 (42%), Gaps = 31/262 (11%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G YFG Q R + T+E + +AL + + ED+ + +
Sbjct: 3 AFRVAYDGRPYFGFQ----------RQPSVSTVEDTLFDALRRLDVLDEDAH---RPTGY 49
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSA+ Q V+ + PE A+N LP +R + V F++ ++ R
Sbjct: 50 AAAGRTDAGVSAVAQTVAFECPEWCTPRALNSELPGNVRAWAAADVDDDFHATHDAIRRQ 109
Query: 122 YSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRY 181
Y+Y YA ++ D DQ + L G H+FHN T LD + +
Sbjct: 110 YTYHL--YAPRAGTESLDGRPHVDDQ--RAREALDALSGEHDFHNLT-----LDETGT-- 158
Query: 182 IMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQ 241
D V+DG + + + ++ F +R++V V I G D +E+ G +
Sbjct: 159 --VRDVSGELVRDG-DFLEIHVESGGFARELVRRLVSVVRCIGSGDAPLDTVERVLGPEV 215
Query: 242 FD----LPMAPGLGLLLEQVHY 259
+ +P AP L+L V Y
Sbjct: 216 LEGREGIPSAPPTPLVLTGVDY 237
>gi|19115377|ref|NP_594465.1| tRNA-pseudouridine synthase (predicted) [Schizosaccharomyces pombe
972h-]
gi|74698445|sp|Q9UTB3.1|YL85_SCHPO RecName: Full=Putative tRNA pseudouridine synthase C25B8.05
gi|6469292|emb|CAB61771.1| tRNA-pseudouridine synthase (predicted) [Schizosaccharomyces pombe]
Length = 450
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 111/262 (42%), Gaps = 49/262 (18%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A FAY G Y GL + + T+EG + EAL +A +T+ P +
Sbjct: 94 VAFKFAYCGWNYNGLAYQL-------EPTPLPTVEGKVFEALLRAHLITD-----PSSCS 141
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK-----EAINEHLPEQIRILSIKRVTKGFNSKN 115
F R RTDKGVSA+ Q++SL + + + +N LP IRI +GF+++
Sbjct: 142 FSRCGRTDKGVSAMGQVISLNVRHSERRPIIYCDVLNRLLPADIRITGYAFPPEGFDARF 201
Query: 116 NCNARTYSYTCPTYAFATPQDTKD--DFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKP 173
+C R Y Y TKD L D+ N AL Y G H+F NF
Sbjct: 202 SCKQRHYKYLF----------TKDYPGGSLDIDRMNEAAAL---YLGEHDFRNFCK---- 244
Query: 174 LDPS-----CSRYIMS--FDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARG 226
+D S R I+S C P L ++G +F+ HQ+R M+ + I +
Sbjct: 245 IDASKQITNYHRRILSSKVICIDP----STGLYAFDLQGTAFLWHQVRCMMAILFLIGQK 300
Query: 227 FTSKDLIEKTFGLDQFDLPMAP 248
LI LD +P P
Sbjct: 301 LEPASLINDL--LDIKKVPTKP 320
>gi|72390962|ref|XP_845775.1| pseudouridylate synthase I [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62175816|gb|AAX69943.1| pseudouridylate synthase I, putative [Trypanosoma brucei]
gi|70802311|gb|AAZ12216.1| pseudouridylate synthase I, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 618
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/370 (23%), Positives = 145/370 (39%), Gaps = 108/370 (29%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFV--TEDSFNTPQN 58
+ + Y G + GLQ + T+EG +++AL AG V + + +
Sbjct: 24 IGLCVMYCGTAFRGLQ-------LQAHAPTHHTVEGVLIQALKDAGIVDGVQRGRVSGEE 76
Query: 59 IQFQRAARTDKGVSALKQIVSLKLPEEANKEA---------INEHLPEQIRILSIKRVTK 109
F R+ RTD+GV A++ +V L +P + A +N HLP +R+ + V
Sbjct: 77 HHFARSCRTDRGVHAVRNLVCLFVPNSKLEAAGGCDRLPQLLNAHLPSTVRVERVTTVMG 136
Query: 110 GFNSKNNCNARTYSYTCPTYAFATPQDTKDDF---------------------RLTPDQF 148
F + C +R Y Y P YA +P + ++F L P++
Sbjct: 137 DFIPRFCCVSRIYRYMIPVYALLSPCSSWNEFYAEFPQAVETLRCRAQGGSFIDLCPNEE 196
Query: 149 NFLQALLK------------QYEGTHNFHNFTSK----------RK---PLDPSCSRYIM 183
+ L A L+ GTH FHNF++ RK P D + R +M
Sbjct: 197 DKLLAALRDVVSRGNGLLAHHVVGTHRFHNFSASPGERYGHGWNRKVVMPNDNTSVRTVM 256
Query: 184 SFD-----------------------------------------CEQPFVKDG-LELITL 201
+ E+ F + L +
Sbjct: 257 RCEIAPRLFLFPQETIGPTRSEYAKSLKIFEGDTAAEGERVVAVSERTFPETALLPYLLF 316
Query: 202 KIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDL-PMAPGLGLLLEQVHYD 260
+I+G+SF+ + IRK+VG+ +A+ RG + L+++T ++ L P+APG L L Y
Sbjct: 317 QIEGRSFLFNMIRKIVGLIIAVLRG-ARESLMQETLSAERHALCPLAPGSFLYLFHSFYT 375
Query: 261 LYNQKYGQDG 270
Y+ + + G
Sbjct: 376 SYDNRVRRSG 385
>gi|448593516|ref|ZP_21652471.1| tRNA pseudouridine synthase A [Haloferax elongans ATCC BAA-1513]
gi|445729297|gb|ELZ80893.1| tRNA pseudouridine synthase A [Haloferax elongans ATCC BAA-1513]
Length = 270
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 108/262 (41%), Gaps = 41/262 (15%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G Y G Q R + T+E +++A G D + +
Sbjct: 3 AFRVAYDGRPYHGFQ----------RQPDVPTVEDTLLDACRTLGICDADEVP----VGY 48
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
+ RTD GVSAL Q V+ + PE A+N LP IR + V F+++++ + R
Sbjct: 49 AASGRTDAGVSALAQTVAFECPEWCTPRALNAELPGTIRAWASADVPDDFHARHHPSRRE 108
Query: 122 YSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRY 181
Y Y P + DD + + + G H+FHN T P
Sbjct: 109 Y-----VYDLHAPSEAVDD--------DLAATVFDELCGEHDFHNLT-------PDEVGT 148
Query: 182 IMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQ 241
+ + D E +DG + + +I+ F +R++V + AIA G ++ +++ F +
Sbjct: 149 VRTLDGE--VWRDG-DFLLFRIEAGGFARELVRRVVSLVRAIATGAAPREKLDRVFSSEH 205
Query: 242 FD----LPMAPGLGLLLEQVHY 259
+P AP L+L V Y
Sbjct: 206 LQGPDGVPPAPPTPLVLTAVDY 227
>gi|302309334|ref|NP_986663.2| AGL003Wp [Ashbya gossypii ATCC 10895]
gi|299788309|gb|AAS54487.2| AGL003Wp [Ashbya gossypii ATCC 10895]
gi|374109914|gb|AEY98819.1| FAGL003Wp [Ashbya gossypii FDAG1]
Length = 432
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 57/285 (20%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ FAY G Y GL I + T+EG I+EA+ K V PQ+ +
Sbjct: 84 IALKFAYLGWNYNGLA-------IQKDPTPLPTVEGTILEAMNKCRMVPS---MVPQDYK 133
Query: 61 FQRAARTDKGVSALKQIVSLKL-----PEEANKEA-----------INEHLPEQIRILSI 104
F R RTDKGVSA+ Q++SL++ P+E A +N+ LP+ IRI +I
Sbjct: 134 FSRCGRTDKGVSAMNQVISLRVRSNLTPQEQEDPANDAREIPYIHILNQLLPDDIRISAI 193
Query: 105 K-RVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHN 163
R KGF+++ +C R Y Y F + + ++ + YEG H+
Sbjct: 194 CLRPPKGFDARFSCKYRHYKYL---------------FNKSGLDLSKMEEAARLYEGEHD 238
Query: 164 FHNFTSKRKPLDPS--CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAM 221
F NF LD S + + + + DG ++ + G +F+ HQ+R M+
Sbjct: 239 FRNFCK----LDGSKQITNFKRTILSAKILHVDG-DMYCFDLLGSAFLWHQVRCMMANLF 293
Query: 222 AIARGFTSKDLIEKTFGLDQ------FDLPMAPGLGLLLEQVHYD 260
+ +G LI +++ +D MA + L+L +D
Sbjct: 294 IVGQGLEPLTLINNLLDVEKNPQKPVYD--MASDIPLILYDCKFD 336
>gi|257126804|ref|YP_003164918.1| tRNA pseudouridine synthase A [Leptotrichia buccalis C-1013-b]
gi|257050743|gb|ACV39927.1| tRNA pseudouridine synthase A [Leptotrichia buccalis C-1013-b]
Length = 251
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 127/271 (46%), Gaps = 36/271 (13%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ +++ Y G + G Q R G+KT++G+I + + K F QNI
Sbjct: 6 VKIVYQYDGSKFCGFQ----------RQMGIKTVQGEIEKVISKTFF---------QNIN 46
Query: 61 FQRAARTDKGVSALKQI----VSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ RTDKGV A++Q+ + +P A K +N+ L +I+IL I+ + + FNS+ +
Sbjct: 47 MISSGRTDKGVHAIEQVSNFMIDQNIPLNAIKRQLNKRLKGEIKILDIEEMDEKFNSRFD 106
Query: 117 CNARTYSYTCPTYAFATPQDTK----DDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRK 172
RTY Y TP +T + D+F Q ++ ++ G H+F +F K K
Sbjct: 107 AQNRTYLYIMKVEDEITPFETNYITGIKEMIDIDKF---QKIMLEFIGKHDFSSFMKKDK 163
Query: 173 PLDPSCSRYIMSFDCEQPFVKDGLE-LITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKD 231
R I +C + K+G E I ++I G F+ +R M+G A+A+ G K+
Sbjct: 164 AYRNPV-REIFFINC--YYDKNGKEKQINIEICGNGFLKTMVRIMIGSALAVYFGKEEKN 220
Query: 232 LIEKTFGLDQFDLP--MAPGLGLLLEQVHYD 260
I+K D +A GL L +V Y+
Sbjct: 221 YIKKKLENPDADGKKILAGSEGLYLYKVSYE 251
>gi|224083654|ref|XP_002193509.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Taeniopygia guttata]
Length = 462
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 111/270 (41%), Gaps = 61/270 (22%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K V + Q
Sbjct: 68 VALRIAYLGWGYQGFASQ---------ENTPNTIEEKLFEALKKTRLVDDR-----QTSN 113
Query: 61 FQRAARTDKGVSALKQIVSL----KLPE---------EANKE------AINEHLPEQIRI 101
+ R RTDKGVSA Q++SL LPE E +E +N LP IR+
Sbjct: 114 YHRCGRTDKGVSAFGQVISLDLRSSLPEGQQLNGHGGEGQQEELRYTHILNRVLPPDIRV 173
Query: 102 LSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGT 161
L+ V F+++ +C +RTY Y P + ++Y GT
Sbjct: 174 LAWAPVGPEFSARFSCLSRTYRYFFPCAQL---------------DVALMDTAAQRYVGT 218
Query: 162 HNFHNFTS----------KRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLH 211
H+F N +R L +R + +D +L ++ GQ+F+ H
Sbjct: 219 HDFRNLCKMDVANGVLNFQRTILRARVTRVSGGGEARP---RDPFQLCQFEVTGQAFLYH 275
Query: 212 QIRKMVGVAMAIARGFTSKDLIEKTFGLDQ 241
Q+R M+ V I +G S D+I++ +++
Sbjct: 276 QVRCMMAVLFLIGQGMESPDVIDELLNVEK 305
>gi|86157969|ref|YP_464754.1| tRNA pseudouridine synthase A [Anaeromyxobacter dehalogenans 2CP-C]
gi|85774480|gb|ABC81317.1| tRNA pseudouridine synthase A [Anaeromyxobacter dehalogenans 2CP-C]
Length = 272
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 111/274 (40%), Gaps = 42/274 (15%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A+ AY G + G Q R G+ T++ + EAL + G Q
Sbjct: 7 ALRLAYDGGRFRGFQ----------RQPGLPTVQQALEEALERLGV----------RAQL 46
Query: 62 QRAARTDKGVSALKQIVSLK----LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNC 117
AARTD GV AL Q+VS L A + +NE LPE I +L RV F+++ +
Sbjct: 47 HVAARTDAGVHALAQVVSFSARAALDPAALRRGLNEGLPEGILVLDAARVGPSFHARGSA 106
Query: 118 NARTYSYTCPT--------YAFATPQDTK--DDFRLTPDQFNFLQALLKQYEGTHNFHNF 167
+RTY Y YA+ P + + P ++ L G H+F F
Sbjct: 107 ASRTYVYLVGAPPPEGLRPYAWTLPDARAFPELAEVPPLDAAAMREALGAAVGEHDFVGF 166
Query: 168 TSKRKPLDPSCSRYIMSFDCEQPFVKDGLE-LITLKIKGQSFMLHQIRKMVGVAMAIARG 226
P R + V+ G L+ + ++G+ F+ +R +VG A+A+ G
Sbjct: 167 AR------PGEQRGTVRTLLRAEVVEAGWAPLVAVVLEGKGFLRAMVRNLVGTAVAVGLG 220
Query: 227 FTSKDLIEKTFGL-DQFDLPMAPGLGLLLEQVHY 259
D+I ++ APG GL L V Y
Sbjct: 221 RAPPDVIRTLLATRGRYRGVRAPGWGLTLAAVRY 254
>gi|448353672|ref|ZP_21542447.1| tRNA pseudouridine synthase A [Natrialba hulunbeirensis JCM 10989]
gi|445639896|gb|ELY92991.1| tRNA pseudouridine synthase A [Natrialba hulunbeirensis JCM 10989]
Length = 286
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 112/278 (40%), Gaps = 57/278 (20%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G Y+G Q R + T+EG + +AL + D+ + P +
Sbjct: 3 AFRLAYDGTDYYGFQ----------RQPDVPTVEGAMFDALRALDVLAPDA-DKPAG--Y 49
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSAL Q V+ + P+ A N LP IR + F++ ++ R
Sbjct: 50 AAAGRTDAGVSALAQTVAFETPDWLTPRAFNSKLPADIRAWTAADAPDEFHATHHARERE 109
Query: 122 YSYTCPTYAFATPQDTKDDFRLTP---------DQFNFLQALLKQYEGTHNFHNFT---- 168
Y+Y Y +A P D+ +P D+F QA G HNFHN T
Sbjct: 110 YTY----YLYAPPASDTDEGHASPTVTAHTVDDDRF---QAACDALSGPHNFHNLTPDDR 162
Query: 169 -SKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGF 227
++R P+ S +DG + + + + F +R++V +A + G
Sbjct: 163 NTERSPVLES--------------TRDG-QFLVVTVTAGGFCRELVRRLVSLAQDVGTGE 207
Query: 228 TSKDLIEKTFGLDQFDLPMAPGLG------LLLEQVHY 259
IE+ D LP G+G L+L V Y
Sbjct: 208 ADLQTIERALEPDP--LPGHEGIGPAPPEPLVLTDVEY 243
>gi|443913214|gb|ELU36078.1| tRNA pseudouridine synthase domain-containing protein [Rhizoctonia
solani AG-1 IA]
Length = 226
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 66/113 (58%), Gaps = 6/113 (5%)
Query: 27 RNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKL---- 82
R+ G TIE + A+ KAG V+ED+ + P + QRAARTD GV A +VSLK+
Sbjct: 56 RDAGTNTIENTLFNAMVKAGAVSEDNSDDPVKVNLQRAARTDAGVHAAGNVVSLKMITEP 115
Query: 83 PEEANKEA-INEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATP 134
P+ + A +NE LP +IR+ + R T FNS+ C++R Y Y P+ A P
Sbjct: 116 PDTPDLVAKLNELLPPEIRVWTFVRSTNAFNSR-ACDSRVYEYMFPSSALLPP 167
>gi|145527104|ref|XP_001449352.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124416940|emb|CAK81955.1| unnamed protein product [Paramecium tetraurelia]
Length = 414
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 122/280 (43%), Gaps = 52/280 (18%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A AY G+ Y GL+ + NQ TIE + +AL + + + +
Sbjct: 51 VAFKLAYVGINYHGLEQQI--------NQ-QNTIENHLFKALQRVRMI-----DNRDDCN 96
Query: 61 FQRAARTDKGVSALKQIVSLKL-----PEEANKEAINEHLPEQIRILSIKRVTKGFNSKN 115
+ RA RTDKGVSA+ +V+L + ++ + +N LPE I+IL V + FN++
Sbjct: 97 YTRAGRTDKGVSAIGNVVALNVRKIGKSDKLYAQILNRVLPEDIQILDECIVDEKFNARY 156
Query: 116 NCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+C R Y Y Y + K D+ + + + + G H+F NF +
Sbjct: 157 DCIKRVYKY----YFY------KMDYNI-----ELMTEAMLLFIGEHDFRNFCKLDVIAN 201
Query: 176 PSCSRYIMSFDCEQPFVK------------DGLELITLKIKGQSFMLHQIRKMVGVAMAI 223
+ R IM+ E+ F + D L L + I+G +F+ HQIR M+ V I
Sbjct: 202 QNFVRTIMNITIEEVFPENAPRCSTLFKDDDRLRLYCVTIEGNAFLWHQIRYMMAVLFLI 261
Query: 224 ARGFTSKDLIEKTFGLDQFD----LPMAPGLGLLLEQVHY 259
+G +I F +FD MAP L+L +
Sbjct: 262 GKGIEKSSVITDLFT--KFDGKPNYQMAPDYPLVLHNCEF 299
>gi|408383137|ref|ZP_11180676.1| tRNA pseudouridine synthase A [Methanobacterium formicicum DSM
3637]
gi|407814245|gb|EKF84877.1| tRNA pseudouridine synthase A [Methanobacterium formicicum DSM
3637]
Length = 274
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 125/260 (48%), Gaps = 37/260 (14%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G ++G Q R ++T+EG++++AL K+G +T N Q+
Sbjct: 4 VALKVAYLGTAFYGFQ----------RQPNLRTVEGELLKALEKSGAIT----NLGQS-S 48
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNAR 120
+ A RTD+GV AL +VS +E +N+ LP IRIL V +GF ++
Sbjct: 49 YSIAGRTDRGVHALGNVVSFCTDKEPIINQVNDVLPMDIRILGSCPVPQGFKTR------ 102
Query: 121 TYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSR 180
Y+Y Y + + T ++ + +Q EGTHNF NF S+R +P
Sbjct: 103 -YAYK-RHYRYVLCRKTGEE----EWDLDKMQEAAHLMEGTHNFINF-SRRNERNP---- 151
Query: 181 YIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFG-- 238
I D + ++ L+ ++G+SF+ + +RKMV + + + + + +EK F
Sbjct: 152 -IRKVDSVRITAENQGCLV--DVEGESFLWNMVRKMVTILLCVGKHEMGIEEVEKCFDPE 208
Query: 239 LDQFDLPMAPGLGLLLEQVH 258
+ +PM P +L++ H
Sbjct: 209 YNACIMPMPPESLILMDVFH 228
>gi|304438671|ref|ZP_07398609.1| tRNA pseudouridine synthase A [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304368320|gb|EFM22007.1| tRNA pseudouridine synthase A [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 275
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 119/278 (42%), Gaps = 32/278 (11%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G Y G Q + ++ ++ + AL + + ++
Sbjct: 9 IALKVAYDGTNYHGFQRQ---------TPPIRAVQNVLEAALAQV---------CGETVE 50
Query: 61 FQRAARTDKGVSALKQIVSL----KLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
A RTD GV A Q+V+ ++P E A+N LP I + + F+++++
Sbjct: 51 LASAGRTDAGVHAYGQVVNFFTDGRIPTERLPRAVNGLLPPDIVVSEAWEAARDFSARHS 110
Query: 117 CNARTYSYTCPTYAFATPQDTKDDFRL-TPDQFNFLQALLKQYEGTHNFHNF-TSKRKPL 174
+ Y Y P +++ P ++ ++A L EGTH++ +F + P+
Sbjct: 111 ATGKAYVYRMKECRVPDPFTRSYAWQIFQPLDYDAMRAALHLLEGTHDYSSFRAAGGAPM 170
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
P + + D + +G ++L I G F+ H +R +V A+A+ G SKD
Sbjct: 171 SP-----VRTLDTIR-LTAEGEGRLSLYIHGTGFLYHMVRNIVSTAVAVGTGRISKDRFA 224
Query: 235 KTFGLDQFDL--PMAPGLGLLLEQVHYDLYNQKYGQDG 270
+ F L P AP GL L V YD +++ DG
Sbjct: 225 EIFAARDRRLAPPTAPAGGLYLLAVDYDGTSERSHTDG 262
>gi|291383625|ref|XP_002708689.1| PREDICTED: CG3045-like [Oryctolagus cuniculus]
Length = 480
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 118/288 (40%), Gaps = 66/288 (22%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K V + Q
Sbjct: 64 VALRIAYLGWGYQGFASQ---------ENTTNTIEEKLFEALTKTRLV-----ESRQTSN 109
Query: 61 FQRAARTDKGVSALKQIVSLKL---------------PEEANKEA--------INEHLPE 97
+ R RTDKGVSA Q++SL L +EAN A +N LP
Sbjct: 110 YHRCGRTDKGVSAFGQVISLDLRSQFPMAKDSESCNSKDEANDVAEEIRYTHILNRVLPP 169
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IRIL+ V GF+++ +C RTY Y P + D + + ++
Sbjct: 170 DIRILAWAPVDPGFSARFSCLERTYHYFFP----------RADLDIVT-----MNCAAQK 214
Query: 158 YEGTHNFHNFTS----------KRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQS 207
Y GTH+F N +R L S E+ ++ +L ++ GQ+
Sbjct: 215 YVGTHDFRNLCKMDVANGVINFQRTILSAKVQLVGQSLGEER--WQEHFQLCQFEVTGQA 272
Query: 208 FMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
F+ HQ+R M+ + I +G D+I++ +++ P P + +E
Sbjct: 273 FLYHQVRCMMAILFLIGQGMEKPDIIDELLNVEKN--PQKPQYSMAVE 318
>gi|294656526|ref|XP_458796.2| DEHA2D07722p [Debaryomyces hansenii CBS767]
gi|199431537|emb|CAG86940.2| DEHA2D07722p [Debaryomyces hansenii CBS767]
Length = 444
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 127/280 (45%), Gaps = 59/280 (21%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ FAY G Y GL +Y + T+E +I++AL K+ +T+ P
Sbjct: 86 IALRFAYVGWDYNGLNFQY-------EPTPLPTVEEEILKALAKSKLITQVD---PACCN 135
Query: 61 FQRAARTDKGVSALKQIVSLK-----LPEEA------NKE-----AINEHLPEQIRILSI 104
F R RTDKGVSA+ Q++SL +PE+ +KE +N LP IRI ++
Sbjct: 136 FSRCGRTDKGVSAMNQVISLDVRSNLIPEDQLSSSNDDKELPYLAILNSLLPTDIRITAV 195
Query: 105 K-RVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHN 163
R F+++ +C+ R Y Y FR + +Q K+YEG +
Sbjct: 196 CLRPPPKFDARFSCSYRHYRYI---------------FRKYDLDLDLMQEGAKRYEGVRD 240
Query: 164 FHNFTSKRKPLDPS-----CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVG 218
F NF +D S R ++S + ++D + L KG +F+ HQ+R M+
Sbjct: 241 FRNFCK----IDGSKQITNYKREVLSANIIH--LRDDFYIFDL--KGSAFLWHQVRCMMA 292
Query: 219 VAMAIARGFTSKDLIEKTFGLDQF----DLPMAPGLGLLL 254
V A+ + + +I+ +++F MA + L+L
Sbjct: 293 VLFAVGQKLEAPSIIDDLVDVEKFPGKPSFEMANDVPLVL 332
>gi|448406634|ref|ZP_21573088.1| tRNA pseudouridine synthase A [Halosimplex carlsbadense 2-9-1]
gi|445677205|gb|ELZ29708.1| tRNA pseudouridine synthase A [Halosimplex carlsbadense 2-9-1]
Length = 270
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 113/262 (43%), Gaps = 39/262 (14%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G + G Q R + T+E + +AL G + +D+ + P +
Sbjct: 3 AYRLAYDGRPFHGFQ----------RQPDVPTVEDAVFDALRDLGVLADDA-DKPDG--Y 49
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSA Q ++ P A N LP +R + V F++ ++ +RT
Sbjct: 50 AAAGRTDAGVSARAQTIAFAAPAWLTPRAFNSELPASVRAWASADVESEFHATHDAESRT 109
Query: 122 YSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRY 181
Y Y + P+D + PD ++ L + G H+FHN T P + R
Sbjct: 110 YRYQ-----LSAPRDGA----IDPD---LVRDALDRLSGEHDFHNLT----PDEEGTVR- 152
Query: 182 IMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQ 241
D +DG + + +++ F+ +R++VG+A+ + RG + +++ FG
Sbjct: 153 ----DLSTAVERDG-DFLVVELSAGGFVRQLVRRVVGLAVEVGRGESELSKVDRVFGDAV 207
Query: 242 FDLP----MAPGLGLLLEQVHY 259
+ P AP L+L V Y
Sbjct: 208 VEGPEGVAPAPPYPLVLWDVAY 229
>gi|343520539|ref|ZP_08757508.1| tRNA pseudouridine synthase A [Parvimonas sp. oral taxon 393 str.
F0440]
gi|343397497|gb|EGV10031.1| tRNA pseudouridine synthase A [Parvimonas sp. oral taxon 393 str.
F0440]
Length = 247
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 125/271 (46%), Gaps = 40/271 (14%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ + +Y G +FG Q + + T++G+I AL K T +NI
Sbjct: 4 IMLTISYDGSLFFGFQ----------KQDDVITVQGEIESALKKI---------TGENIN 44
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEAN----KEAINEHLPEQIRILSIKRVTKGFNSKNN 116
A RTD+GV +L+ I++ K A+N LP +R+L K V++ F+S+ +
Sbjct: 45 IISAGRTDRGVHSLRHIINFHTESNVGVLNFKTALNHFLPIGVRVLDSKEVSEDFHSRFD 104
Query: 117 CNARTYSYTCPTYAFATP--QDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
+TY Y P + K +F P +Q + + G +F F R
Sbjct: 105 ATMKTYKYILNLDEVMDPIYYNYKANFPY-PLDIEKMQRAKEHFIGKKSFKAFMGPRTG- 162
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+ + R I SF+ K+ +LI L IKGQSF+ +Q+R MVG + I RG +D +E
Sbjct: 163 NTNPVRDIKSFEI----YKENNDLIFL-IKGQSFIRNQVRIMVGTLVDIGRGLIEEDELE 217
Query: 235 KTFGLDQFD-----LPMAPGLGLLLEQVHYD 260
K LD D + ++P GL L ++ YD
Sbjct: 218 KI--LDSEDRTRAGITLSPN-GLYLMEILYD 245
>gi|220917510|ref|YP_002492814.1| tRNA pseudouridine synthase A [Anaeromyxobacter dehalogenans 2CP-1]
gi|219955364|gb|ACL65748.1| tRNA pseudouridine synthase A [Anaeromyxobacter dehalogenans 2CP-1]
Length = 272
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 103/254 (40%), Gaps = 32/254 (12%)
Query: 22 FLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLK 81
F F R G+ T++ + EAL + G Q AARTD GV AL Q+VS
Sbjct: 17 FRGFQRQPGLPTVQQALEEALERLGV----------RAQLHVAARTDAGVHALAQVVSFS 66
Query: 82 ----LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTC---PTYAFATP 134
L A + +NE LPE I +L RV F+++ + ARTY Y P
Sbjct: 67 ARAALDPVALRGGLNEGLPEGILVLDAARVGPSFHARGSAIARTYVYLVGAPPPVGLRPY 126
Query: 135 QDTKDDFRLTPDQFNF-------LQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDC 187
T D R PD ++ L G H+F F P R +
Sbjct: 127 AWTLPDARAFPDLAEVPPLDAAAMREALGHAVGEHDFVGFAR------PGEQRGTVRTLL 180
Query: 188 EQPFVKDGLE-LITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGL-DQFDLP 245
++ G L+ + ++G+ F+ +R +VG A+A G D+I ++
Sbjct: 181 RAEVIEAGWAPLVAVVLEGKGFLRAMVRNLVGTAVAAGLGRAPPDVIRTLLATRGRYRGV 240
Query: 246 MAPGLGLLLEQVHY 259
APG GL L V Y
Sbjct: 241 RAPGWGLTLAAVRY 254
>gi|326933214|ref|XP_003212702.1| PREDICTED: tRNA pseudouridine synthase 3-like [Meleagris gallopavo]
Length = 710
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 85/341 (24%), Positives = 139/341 (40%), Gaps = 83/341 (24%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K V ++ Q
Sbjct: 66 VALRIAYLGWGYQGFASQ---------ENTSNTIEEKLFEALKKTRLV-----DSRQTSN 111
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKEA-------------------------INEHL 95
+ R RTDKGVSA Q++SL L +KE +N L
Sbjct: 112 YHRCGRTDKGVSAFGQVISLDLRSNLSKEKKLNGCTGDSEGKSSKSEEELRYTHILNRVL 171
Query: 96 PEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALL 155
P IR+L+ V F+++ +C RTY Y P +QA
Sbjct: 172 PPDIRVLAWAPVEPDFSARFSCLKRTYRYFFPCADL---------------DVALMQAAA 216
Query: 156 KQYEGTHNFHNFTSKRKPLDPSCS-----RYIMSFDC------EQPFVKDGLELITLKIK 204
++Y GTH+F N +D + R I+S + ++D L ++
Sbjct: 217 QRYVGTHDFRNLCK----MDVANGVINFQRTILSAQVTWVDGGAEGGLRDPFRLCQFEVT 272
Query: 205 GQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQ 264
GQ+F+ HQ+R M+ + I + ++I++ +++ P P + +E LY+
Sbjct: 273 GQAFLYHQVRCMMAILFLIGQRMEGPEIIDELLDVEKN--PRKPQYSMAVE-FPLVLYDC 329
Query: 265 KYGQDGMHESLHFHEVDKEVNEFR----HKFILPYLVKTEI 301
++ E++ +H D+EV EF + Y VKT++
Sbjct: 330 EF------ENIQWH-YDQEVQEFNITHLQQLWASYAVKTQV 363
>gi|153792349|ref|NP_001093370.1| pseudouridylate synthase 3 [Xenopus laevis]
gi|148745611|gb|AAI42593.1| LOC100101318 protein [Xenopus laevis]
Length = 507
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 120/282 (42%), Gaps = 57/282 (20%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ T+E + AL K V + Q
Sbjct: 61 VALRLAYLGWGYQGFASQ---------ENTKNTVEETVFNALLKTRLV-----ESRQTSN 106
Query: 61 FQRAARTDKGVSALKQIVSLKL-------PEEANKEAINEHLPEQIRILSIKRVTKGFNS 113
+ R RTD+GVSAL Q++SL L PE +N LP IR+LS V F++
Sbjct: 107 YHRCGRTDRGVSALAQVISLDLRCSAEGKPEIRYVHILNRVLPPDIRVLSWAPVPPSFSA 166
Query: 114 KNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKP 173
+ +C +RTY Y P +L + + LL EGTH+F N
Sbjct: 167 RFSCGSRTYRYLFPCA------------QLDVEAMDKAARLL---EGTHDFRNLCK---- 207
Query: 174 LDPSC-----SRYIMSFDC----EQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIA 224
+D + +R ++S E P +L L+I G +F+ HQ+R ++GV +
Sbjct: 208 MDVANGVLNFTRTVLSARVGPVPEIPGDMGPFQLYHLQITGLAFLYHQVRCIMGVLFLVG 267
Query: 225 RGFTSKDLIEKTFGLDQFDLP------MAPGLGLLLEQVHYD 260
+G ++I T LD P MA L+L H+D
Sbjct: 268 QGKEKPEVI--TELLDVVKNPRKPQYNMAVEFPLVLYNCHFD 307
>gi|342215554|ref|ZP_08708201.1| tRNA pseudouridine synthase A [Peptoniphilus sp. oral taxon 375
str. F0436]
gi|341586444|gb|EGS29844.1| tRNA pseudouridine synthase A [Peptoniphilus sp. oral taxon 375
str. F0436]
Length = 245
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 120/266 (45%), Gaps = 32/266 (12%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ + AY G Y G Q + G+KT+EG + EAL +A F+ Q I
Sbjct: 5 LKLTLAYDGTNYHGYQDQ----------PGLKTVEGKVKEAL-EATFL--------QEID 45
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEAN----KEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ A RTDKGV + Q+V+ K+ + +N +LP I +L ++ V F+++ +
Sbjct: 46 LKSAGRTDKGVHSQGQVVNFKVDTSIDLGNLPRVVNFNLPPDISVLGVQVVDDDFHARFS 105
Query: 117 CNARTYSYTCPTYAFATP-QDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
A+ Y Y + P + + F P ++ LK G ++ F R +
Sbjct: 106 AKAKLYRYVIYNGRYRNPLYENRACFVHFPLDEKKMEKALKDLPGLRDYGVFMG-RHAVV 164
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
R + D VK +LI + G+SF+ + IR+++G ++ I RG D ++K
Sbjct: 165 KDTYRKLYWVD-----VKRKKDLIVIHFYGKSFLKNMIRRIMGTSIEIGRGLKDTDTLKK 219
Query: 236 TF-GLDQFDL-PMAPGLGLLLEQVHY 259
D+ L P AP GL L +V Y
Sbjct: 220 ALESQDKAYLGPTAPAEGLYLMRVDY 245
>gi|284166628|ref|YP_003404907.1| Pseudouridine synthase I, TruA, alpha/beta domain-containing
protein [Haloterrigena turkmenica DSM 5511]
gi|284016283|gb|ADB62234.1| Pseudouridine synthase I, TruA, alpha/beta domain protein
[Haloterrigena turkmenica DSM 5511]
Length = 295
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 120/282 (42%), Gaps = 56/282 (19%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G GY G Q R + T+E I +AL + D+ + P +
Sbjct: 5 AFRIAYDGTGYHGFQ----------RQPDVPTVEDAIFDALRDLEVLAADA-DRPDG--Y 51
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSAL Q V+L+ P+ A+N LP IR + F++ ++ R
Sbjct: 52 AAAGRTDAGVSALAQTVALEAPDWLTPRALNGELPADIRAWAAADAPPEFHATHHAERRE 111
Query: 122 YSYTCPTYAFATPQDTKDDFRLTP------------------DQFNFLQALLKQYEGTHN 163
Y+Y + +A P D++ R P D+F +A + G+H+
Sbjct: 112 YAY----HLYAPPADSRRRDRAAPVSDRAGTRGSPGQRAVDDDRF---RAACEALSGSHD 164
Query: 164 FHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAI 223
FHN T P D + R S E ++DG + + + + F+ +R++V +A A+
Sbjct: 165 FHNLT----PDDRNTER---SPTLEA--IRDG-DFLVVTVTAGGFVRELVRRLVSLARAV 214
Query: 224 ARGFTSKDLIEKTFGLDQFDLP------MAPGLGLLLEQVHY 259
G + I++ F D LP AP L+L V Y
Sbjct: 215 GTGDAPLEKIDRAF--DPEPLPGHEGVAPAPPEPLVLTAVDY 254
>gi|428165605|gb|EKX34596.1| hypothetical protein GUITHDRAFT_119246 [Guillardia theta CCMP2712]
Length = 643
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 82/341 (24%), Positives = 159/341 (46%), Gaps = 56/341 (16%)
Query: 5 FAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRA 64
+Y G + G+Q RN T++ ++E + G + ED +F A
Sbjct: 314 LSYLGHKFLGIQ----------RNPYGPTVQQCLVEHMVLLGAIEEDRVE-----EFLIA 358
Query: 65 ARTDKGVSALKQIVSLKL-------PEEANKEAINEHLP---EQIRILSIKRVTKG--FN 112
+RTDKGV A + +V + + P A +N + +Q+ +++++++ G +
Sbjct: 359 SRTDKGVHAAQSLVVVTMKKIQCQSPIAAFIAKLNRSMKAKQQQVEVIAMRQIDPGSKLD 418
Query: 113 SKNNCNARTYSYTCPTYAFATPQ-----DTKDDF------RLTPDQFNFLQALLKQYEGT 161
++ + RTY Y P +A A Q +++ + RLT ++ +Q +L ++
Sbjct: 419 TQLDTMCRTYQYIIPAFALAPLQREVAANSQQLYARMRTARLTAEELEHVQQVLSCFQRK 478
Query: 162 HNFHNFTSKRKPLD-PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVA 220
NF FT + K +R + SF ++ + +E ++++G+ FM HQIRKM+G++
Sbjct: 479 DNFVAFTDEAKADKYKETTREVSSFKIKELVYNNNIEYAVIEVEGKGFMYHQIRKMIGLS 538
Query: 221 MAIAR-GFTSKDLIEKTF------GLDQF-DLPMAPGLGLLLEQVHYDLYNQKYGQDGMH 272
+ I + G + IE F G D+ +AP L L+ +++ KY D +
Sbjct: 539 ILIIQAGLDHRKSIEGVFRGVPLPGKDKVSSFRLAPAEPLFLDHINF-----KY--DKIK 591
Query: 273 ESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELL 313
L + + + F+ I+P++ K I KP+L +++ L
Sbjct: 592 SFLENPSIMYKNDAFKRNTIIPHVYKESI--KPILDFIQAL 630
>gi|312136442|ref|YP_004003779.1| tRNA pseudouridine synthase a [Methanothermus fervidus DSM 2088]
gi|311224161|gb|ADP77017.1| tRNA pseudouridine synthase A [Methanothermus fervidus DSM 2088]
Length = 277
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 118/261 (45%), Gaps = 41/261 (15%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G +FG Q R ++T+EG++++AL + G + E +
Sbjct: 4 IALKVAYIGTHFFGFQ----------RQPDLRTVEGELIKALVETGILDESGVA-----R 48
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNAR 120
F+ A RTDKGV AL +V+ E+ IN LP+ + IL V GF +
Sbjct: 49 FRSAGRTDKGVHALGNVVTFFTDEDVIINQINSCLPDDVYILGKASVPYGF--------K 100
Query: 121 TYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSR 180
T Y + P D + ++ K++EG H+F NF+ + + +P R
Sbjct: 101 TRYAYRRHYRYVLPNDGLN--------IELMKEASKKFEGRHDFTNFSRRVEERNP--IR 150
Query: 181 YIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD 240
YI D V D E I + + G+SF+ +RKMV V I + + I++ +
Sbjct: 151 YIEKVD-----VVDKGEYIWVDVIGESFLWQMVRKMVKVLFDIGKEEYEPEKIDEFLDTE 205
Query: 241 Q--FDLPMAPGLGLLLEQVHY 259
+ + PM P L+L +V Y
Sbjct: 206 EKVYIEPMPPE-NLILMKVMY 225
>gi|366990335|ref|XP_003674935.1| hypothetical protein NCAS_0B04790 [Naumovozyma castellii CBS 4309]
gi|342300799|emb|CCC68563.1| hypothetical protein NCAS_0B04790 [Naumovozyma castellii CBS 4309]
Length = 444
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 122/268 (45%), Gaps = 56/268 (20%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ FAY G Y GL I + TIEG I+EAL + V S N P+ Q
Sbjct: 88 VALRFAYLGWNYNGLA-------IQNEPTPLPTIEGKILEALHISRLVP--SMN-PREYQ 137
Query: 61 FQRAARTDKGVSALKQIVSLKL-----PEEANKEA-----------INEHLPEQIRILSI 104
F R RTDKGVSA+ Q++SL++ PEE A +N+ LP+ IR+ ++
Sbjct: 138 FSRCGRTDKGVSAMNQVISLRVRSNLTPEEQLDPANDRREIKYVHILNQLLPDDIRVSAV 197
Query: 105 -KRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHN 163
R +GF+++ +C +R Y Y F+ D D R+ FL G H+
Sbjct: 198 CLRPPEGFDARFSCESRHYKYL-----FSN--DGLDISRMQEGATLFL--------GEHD 242
Query: 164 FHNFTSKRKPLDPS--CSRYIMSFDCEQPF-VKDGLELITLKIKGQSFMLHQIRKMVGVA 220
F NF LD S + Y S + ++D +L L + G +F+ HQ+R M+
Sbjct: 243 FRNFCK----LDGSKQITNYKRSVISAKILHIRD--DLYCLDLVGSAFLWHQVRCMMAHL 296
Query: 221 MAIARGFTSKDLIEKTFGLDQFDLPMAP 248
I +G LI D FD+ P
Sbjct: 297 FLIGQGLEEPSLIN-----DMFDIVKTP 319
>gi|125586190|gb|EAZ26854.1| hypothetical protein OsJ_10771 [Oryza sativa Japonica Group]
Length = 516
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 88/183 (48%), Gaps = 20/183 (10%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ + Y G Y GLQ + TIE + A+FKAG + E ++ Q +
Sbjct: 74 VVLRVGYVGTEYRGLQKQREL-------SADSTIESVLETAIFKAGGILESNYGKLQKVG 126
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEA---------INEHLPEQIRILSIKRVTK 109
++R++RTDKGV +L ++SLK+ P+ A + IN +LP+ +R+ S+ +
Sbjct: 127 WERSSRTDKGVHSLATMISLKMEIPDRAWENDPDGIALSNFINSNLPDNVRVFSVLPAQR 186
Query: 110 GFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTS 169
F+ + C R Y Y P + + + + ++LK +EG H FHN+T+
Sbjct: 187 SFDVRRECLYREYLYLLPAEIIGIKGGCSSEEVM--EHLSEFNSILKGFEGNHPFHNYTA 244
Query: 170 KRK 172
+ K
Sbjct: 245 RAK 247
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 77/147 (52%), Gaps = 10/147 (6%)
Query: 174 LDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLI 233
L+ S R I++F C + + G++ + L I G SFMLHQIRKMVG ++A+ RG KD+I
Sbjct: 335 LNASHFRDILTFSCGELQISSGIQFVELTISGVSFMLHQIRKMVGTSVAVKRGLLPKDII 394
Query: 234 EKTFG-LDQFDLPMAPGLGLLLEQVHYDLYNQ-----KYGQDGMHESLHFHEVDKEVNEF 287
+ + LP+AP L+L + L N+ + G M+ES EV K V EF
Sbjct: 395 ALSLAKFSRIVLPIAPSEVLVLRDNSFCLRNKQGTIVRPGIQSMNES---EEVKKGVMEF 451
Query: 288 RHKFILPYLVK-TEITEKPMLAWLELL 313
++P L + + P W+E L
Sbjct: 452 YRAALVPELANFLDASMPPWKEWVENL 478
>gi|115452911|ref|NP_001050056.1| Os03g0338600 [Oryza sativa Japonica Group]
gi|108708043|gb|ABF95838.1| tRNA pseudouridine synthase family protein, expressed [Oryza sativa
Japonica Group]
gi|113548527|dbj|BAF11970.1| Os03g0338600 [Oryza sativa Japonica Group]
Length = 516
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 88/183 (48%), Gaps = 20/183 (10%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ + Y G Y GLQ + TIE + A+FKAG + E ++ Q +
Sbjct: 74 VVLRVGYVGTEYRGLQKQREL-------SADSTIESVLETAIFKAGGILESNYGKLQKVG 126
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEA---------INEHLPEQIRILSIKRVTK 109
++R++RTDKGV +L ++SLK+ P+ A + IN +LP+ +R+ S+ +
Sbjct: 127 WERSSRTDKGVHSLATMISLKMEIPDRAWENDPDGIALSNFINSNLPDNVRVFSVLPAQR 186
Query: 110 GFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTS 169
F+ + C R Y Y P + + + + ++LK +EG H FHN+T+
Sbjct: 187 SFDVRRECLYREYLYLLPAEIIGIKGGCSSEEVM--EHLSEFNSILKGFEGNHPFHNYTA 244
Query: 170 KRK 172
+ K
Sbjct: 245 RAK 247
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 77/147 (52%), Gaps = 10/147 (6%)
Query: 174 LDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLI 233
L+ S R I++F C + + G++ + L I G SFMLHQIRKMVG ++A+ RG KD+I
Sbjct: 335 LNASHFRDILTFSCGELQISSGIQFVELTISGVSFMLHQIRKMVGTSVAVKRGLLPKDII 394
Query: 234 EKTFG-LDQFDLPMAPGLGLLLEQVHYDLYNQ-----KYGQDGMHESLHFHEVDKEVNEF 287
+ + LP+AP L+L + L N+ + G M+ES EV K V EF
Sbjct: 395 ALSLAKFSRIVLPIAPSEVLVLRDNSFCLRNKQGTIVRPGIQSMNES---EEVKKGVMEF 451
Query: 288 RHKFILPYLVK-TEITEKPMLAWLELL 313
++P L + + P W+E L
Sbjct: 452 YRAALVPELANFLDASMPPWKEWVENL 478
>gi|297739353|emb|CBI29343.3| unnamed protein product [Vitis vinifera]
Length = 466
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 119/278 (42%), Gaps = 73/278 (26%)
Query: 33 TIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKL---------- 82
T+E +I +AL K D + +Q+ R RTDKGVS++ Q+++L L
Sbjct: 126 TVESEIFKALEKTWLAVGDK----KELQYSRCGRTDKGVSSVGQVIALFLRSNLKEIGAR 181
Query: 83 --------PEEANKE-----------------------AINEHLPEQIRILSIKRVTKGF 111
PEE +E +N LP+ IR++ V GF
Sbjct: 182 EENSKEVVPEEQYEERREVKDEGGGDSLASEGEIDYMRVLNRVLPKDIRVMGWCPVPIGF 241
Query: 112 NSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFL--QALLKQYEGTHNFHNFTS 169
+++ +C +R Y Y N L ++ K++ G H+F NF
Sbjct: 242 HARFSCLSREYKYF-----------------FWRGNLNILAMESAGKKFVGEHDFRNFCK 284
Query: 170 KRKPLDPSCSRYIMSFDCEQPFVK-DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFT 228
+ R+I+SF+ + DG +L +KIKG +F+ HQ+R MV V I +G
Sbjct: 285 MDAVNVHNYRRHIISFEIAPTNNRYDGNQLWAIKIKGSAFLWHQVRCMVAVLFMIGQGLE 344
Query: 229 SKDLI------EKTFGLDQFDLPMAPGLGLLLEQVHYD 260
S D++ E+T Q+ MAP + L+LE ++
Sbjct: 345 SPDVVDALLDTERTSRKPQY--AMAPEIPLVLESCEFE 380
>gi|428171114|gb|EKX40033.1| hypothetical protein GUITHDRAFT_113769 [Guillardia theta CCMP2712]
Length = 508
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 82/177 (46%), Gaps = 30/177 (16%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ Y G Y GLQ QG+ TI+G+I + + AG +++ + + Q ++
Sbjct: 14 LALLLGYKGTKYHGLQ---------ISAQGLPTIQGEIFNSFYTAGMISDSNKDDSQKLK 64
Query: 61 FQRAARTDKGVSALKQIVSLKL-----PE----EANKEAINEHLPEQIRILSIKRVTKGF 111
+ ++RTDKGV + S KL P+ A + N LP IRIL R++K
Sbjct: 65 WSSSSRTDKGVHTSFCVCSFKLLMDETPQYRVSPAEIQRWNTFLPGDIRILQAFRLSKNA 124
Query: 112 NSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFT 168
N C R Y Y P L + L+ LLK +EGTH FHNF+
Sbjct: 125 RINNMCTQREYEYLVPFNV------------LNGRPVSELKRLLKAFEGTHRFHNFS 169
>gi|84489200|ref|YP_447432.1| tRNA pseudouridine synthase A [Methanosphaera stadtmanae DSM 3091]
gi|121725515|sp|Q2NHB4.1|TRUA_METST RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|84372519|gb|ABC56789.1| TruA [Methanosphaera stadtmanae DSM 3091]
Length = 274
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 123/263 (46%), Gaps = 38/263 (14%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G + G Q R +T+EG+++ +FK + ED++
Sbjct: 4 VALKIAYIGSNFHGYQ----------RQPNYRTVEGELLR-VFKETNIIEDTWTA----H 48
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNAR 120
+ A RTDKGV + ++S E+ + +N LP+ I+I+ RV GF + R
Sbjct: 49 YSVAGRTDKGVHSTGNVISFITDEDIHINQLNGLLPDDIKIIGEARVPYGFKVRFPL-TR 107
Query: 121 TYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSR 180
TY+Y P F K + +T + ++ + G HNF NF SKR +P +R
Sbjct: 108 TYTYIQPISPFE-----KKNLDITK-----MHVAMESFIGKHNFRNF-SKRNEKNP--NR 154
Query: 181 YIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARG-FTSKDLIE--KTF 237
I+ + E V + + + T I G+SF+ + +RKMV M + G D+ E K
Sbjct: 155 KIIDVNLE---VDEDVLIFT--IVGESFLWNMVRKMVTSIMEVGYGKLDINDINELLKPK 209
Query: 238 GLDQF-DLPMAPGLGLLLEQVHY 259
L QF L AP GL+L + Y
Sbjct: 210 ELRQFIRLQPAPANGLILSDMEY 232
>gi|15678860|ref|NP_275977.1| tRNA pseudouridine synthase A [Methanothermobacter
thermautotrophicus str. Delta H]
gi|3915162|sp|O26928.1|TRUA_METTH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|2621931|gb|AAB85338.1| pseudouridylate synthase I [Methanothermobacter thermautotrophicus
str. Delta H]
Length = 275
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 114/257 (44%), Gaps = 40/257 (15%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G Y G Q R + T+EG ++EAL AG + + P+ +
Sbjct: 4 IALKVAYIGTNYHGFQ----------RQPDVPTVEGKLLEALEGAGIIED-----PKRAR 48
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNAR 120
FQ A RTD+GV AL VS E+ + IN+ LP IR+L+ V F + R
Sbjct: 49 FQIAGRTDRGVHALGNFVSFFTEEDIHVNQINDLLPRDIRVLAWASVMYPFKVRYPLE-R 107
Query: 121 TYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSR 180
Y Y +++ D + + +F GTH+F NF S+R DP R
Sbjct: 108 HYRYILHR------EESMDTYSMAEAAAHF--------RGTHDFSNF-SRRSDRDP--VR 150
Query: 181 YIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD 240
I D V D I + + G+SF+ +RKMV + ++ G + D + D
Sbjct: 151 RIN--DVRISEVGDS---IIIDVYGESFLWQMVRKMVRALLMVSEGELAPDDMAGLLDTD 205
Query: 241 Q--FDLPMAPGLGLLLE 255
+ F PM P +L++
Sbjct: 206 RRVFLEPMPPENLILMD 222
>gi|384248918|gb|EIE22401.1| tRNA pseudouridine synthase, partial [Coccomyxa subellipsoidea
C-169]
Length = 277
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 108/256 (42%), Gaps = 40/256 (15%)
Query: 7 YSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAAR 66
Y +G F + +Y F + +T+EG + A+ K + E + + + R R
Sbjct: 12 YVALGVFYVGWRYHGFA--SQADSEETVEGHLFRAMRKTKLIPEGL--GWEGLGYSRCGR 67
Query: 67 TDKGVSALKQIVSLKLPEEANKE--------------AINEHLPEQIRILSIKRVTKGFN 112
TDKGVSAL Q+V+L L A + +N LP+ IR+L V +GF+
Sbjct: 68 TDKGVSALGQVVALWLRSGAKADEPALGVDEEMDYAVTLNRALPDDIRVLGWTPVPEGFS 127
Query: 113 SKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRK 172
++ C +Y + D L +Q + G H+F NF
Sbjct: 128 AR-----------CSSYFIVQ----RGDLDLAA-----MQEAAGHFVGDHDFRNFCKVDA 167
Query: 173 PLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDL 232
S R I+ F ++ ++ L ++G +F+ HQ+R M V + + RG S D+
Sbjct: 168 QHVSSFRRTILDFRIVPVGLQGAAQVCALHVRGTAFLWHQVRCMAAVLLLVGRGLESPDI 227
Query: 233 IEKTFGLDQFDLPMAP 248
+ + LD P+ P
Sbjct: 228 VRRL--LDVEVTPLKP 241
>gi|448390191|ref|ZP_21565971.1| tRNA pseudouridine synthase A [Haloterrigena salina JCM 13891]
gi|445667519|gb|ELZ20161.1| tRNA pseudouridine synthase A [Haloterrigena salina JCM 13891]
Length = 295
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 119/282 (42%), Gaps = 56/282 (19%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G GY G Q R + T+E I +AL + D+ + P +
Sbjct: 5 AFRIAYDGTGYHGFQ----------RQPDVPTVEDAIFDALRDLEVLAPDA-DRPDG--Y 51
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSAL Q V+L+ P+ A+N LP IR + + F++ ++ R
Sbjct: 52 AAAGRTDAGVSALAQTVALEAPDWLTPRALNGELPADIRAWAAADAPREFHATHHAERRE 111
Query: 122 YSYTCPTYAFATPQDTKDDFRLTP------------------DQFNFLQALLKQYEGTHN 163
Y+Y + +A P D++ R P D+F +A + G+H+
Sbjct: 112 YAY----HLYAPPADSRRRDRAAPAGDRADDRGASGRNAVDDDRF---RAACEALSGSHD 164
Query: 164 FHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAI 223
FHN T P D + R S E +DG + + L + F +R++V +A A+
Sbjct: 165 FHNLT----PDDRNTER---SPTLEA--TRDG-DFLVLTVTAGGFARELVRRLVSLARAV 214
Query: 224 ARGFTSKDLIEKTFGLDQFDLPMAPGLG------LLLEQVHY 259
G + I++ F D LP G+ L+L V Y
Sbjct: 215 GTGDAPLEKIDRAF--DPEPLPGHEGVAPAAPEPLVLTAVDY 254
>gi|340056882|emb|CCC51221.1| putative pseudouridylate synthase I, fragment [Trypanosoma vivax
Y486]
Length = 512
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 82/156 (52%), Gaps = 23/156 (14%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSF---NTPQ 57
+A++F Y G Y GLQ +L T+E +++ A+ K ++E+++ Q
Sbjct: 24 VAIVFGYVGERYCGLQWNHL--------PDHPTVEEELLRAMRKTNMISEENYAQDKVQQ 75
Query: 58 NIQFQRAARTDKGVSALKQIVSLK--LPEEAN----------KEAINEHLPEQIRILSIK 105
+ ++R +RTDKGV AL+ +VSL LP N K +N+ LP I I +
Sbjct: 76 KLNWERTSRTDKGVHALRNVVSLNAMLPYSKNSADEFDLEEAKRLLNDVLPPDIVIYEVV 135
Query: 106 RVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDF 141
VT+ FN+ C RTY Y PT+AF +P++ ++ +
Sbjct: 136 PVTRSFNAYMLCGGRTYEYYLPTFAFMSPEEYREKY 171
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 77/170 (45%), Gaps = 11/170 (6%)
Query: 154 LLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQI 213
+L Y GT S D S + V GLE++ +++ GQSFM +QI
Sbjct: 331 MLHVYGGTDGEEGVNSNCSSEDCSNCSGVSGLTPATGHVCGGLEVVRIELCGQSFMFNQI 390
Query: 214 RKMVGVAMAIARGFTSKDLIEKTF--GLDQFDLPMAPGLGLLLEQVHYDLYN------QK 265
RKM+G A+ + + + F + PMAP GL L + + YN Q
Sbjct: 391 RKMIGTVAAMCVAGLPPEYLRQHFLNKAIRCGTPMAPANGLFLTYLDFQRYNYRLERIQT 450
Query: 266 YGQDGM-HESLHFHEVDK-EVNEFRHKFILPYLVKTEITEKPMLAWLELL 313
GQ+G+ + LH VD+ V EFR K I+ +++ E+ M W+ L
Sbjct: 451 EGQNGIGKKGLHVDRVDEGAVAEFRRK-IVAVILRNEMAIDGMGRWMRSL 499
>gi|45360593|ref|NP_988969.1| pseudouridylate synthase 3 [Xenopus (Silurana) tropicalis]
gi|38174435|gb|AAH61416.1| pseudouridylate synthase 3 [Xenopus (Silurana) tropicalis]
Length = 505
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 116/282 (41%), Gaps = 57/282 (20%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ T+E + AL K V + Q
Sbjct: 64 VALRLAYLGWGYQGFASQ---------ENTKNTVEETVFNALIKTRLV-----ESRQTSN 109
Query: 61 FQRAARTDKGVSALKQIVSLKL-------PEEANKEAINEHLPEQIRILSIKRVTKGFNS 113
+ R RTD+GVSAL Q++SL L PE +N LP IR+LS V F++
Sbjct: 110 YHRCGRTDRGVSALGQVISLDLRCSGEGKPEIRYVHILNRVLPPDIRVLSWAAVPPSFSA 169
Query: 114 KNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKP 173
+ +C +RTY Y P + + EGTH+F N
Sbjct: 170 RFSCRSRTYRYLFPCAQL---------------DVEAMDKAARLLEGTHDFRNLCK---- 210
Query: 174 LDPSCS-----RYIMSFDCEQ----PFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIA 224
+D + R ++S E P +L L+I G +F+ HQ+R ++GV +
Sbjct: 211 MDVANGVMNFIRTVLSARVEPVPEIPGDMGPFQLYRLQITGLAFLYHQVRCIMGVLFLVG 270
Query: 225 RGFTSKDLIEKTFGL------DQFDLPMAPGLGLLLEQVHYD 260
+G ++I + + Q++ MA L+L H+D
Sbjct: 271 QGKEKPEVITELLDVAKNPRKPQYN--MAVEFPLVLYNCHFD 310
>gi|363900599|ref|ZP_09327104.1| tRNA pseudouridine synthase A [Oribacterium sp. ACB1]
gi|395209079|ref|ZP_10398244.1| tRNA pseudouridine(38-40) synthase [Oribacterium sp. ACB8]
gi|361956473|gb|EHL09791.1| tRNA pseudouridine synthase A [Oribacterium sp. ACB1]
gi|394705680|gb|EJF13206.1| tRNA pseudouridine(38-40) synthase [Oribacterium sp. ACB8]
Length = 253
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 115/270 (42%), Gaps = 35/270 (12%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ AY G Y G Q R + ++T+ G++ E L + P Q
Sbjct: 4 FVLKLAYEGTNYHGFQ----------RQEELRTVSGEVEEVLSRL---------FPGECQ 44
Query: 61 -FQRAARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKN 115
F A+RTD+GV AL I+S E N E A+N +LPE IR+LS + T+ F+ +
Sbjct: 45 NFIGASRTDQGVHALGNILSFDTEAERNPENYERALNSYLPEDIRVLSAWKKTEDFHPRF 104
Query: 116 NCNARTYSYTCPTYAFATPQDTKDDFRLT-PDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
+ + Y Y+ P + + T P ++ ++ +G H+F +F + +
Sbjct: 105 TAHTKEYRYSIDRARVENPLYQRLYYHYTFPLDLAIIREGIEILKGEHDFTSFANPKAQT 164
Query: 175 ---DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKD 231
S R I F E+ +G E + +KG F+ H IR + G + + RG S
Sbjct: 165 LLQGGSAVRCITDFRLEE----EG-EYLHFTVKGNGFLYHMIRILCGTLLEVGRGRISPS 219
Query: 232 LIEKTFGLDQFDL--PMAPGLGLLLEQVHY 259
+ + L P AP GL L + Y
Sbjct: 220 ALSEILAGKDRRLAGPTAPAKGLCLIHLDY 249
>gi|401682481|ref|ZP_10814372.1| tRNA pseudouridine(38-40) synthase [Streptococcus sp. AS14]
gi|400184132|gb|EJO18377.1| tRNA pseudouridine(38-40) synthase [Streptococcus sp. AS14]
Length = 249
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 120/270 (44%), Gaps = 41/270 (15%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G G+ G Q R ++++ +I + L + N Q +
Sbjct: 7 IISYDGYGFAGFQ----------RQPHARSVQEEIEKTLTR--------INKGQPVVIHG 48
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV AL Q++ LPEE ++E A++ PE I +S+++V+ F+S+ N ++
Sbjct: 49 AGRTDSGVHALGQVLHFDLPEERDEEKLRFALDTQTPEDIDFISVEQVSDDFHSRYNKHS 108
Query: 120 RTYSYTCPTYAFATPQDTKDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+TY + P++ T P + + ++ + Q EGTH+F FT+ ++
Sbjct: 109 KTYEFLV---DIGRPKNPMMRHYATHYPYPLELSLIEEAIAQLEGTHDFTGFTASGTSVE 165
Query: 176 P---SCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDL 232
+ + + FD E+ F + G F+ QIR MVG + I +
Sbjct: 166 DKIRTITEAKVRFDAERNF-------LVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQ 218
Query: 233 IEKTFGLDQFDL--PMAPGLGLLLEQVHYD 260
I++ L P A GL L+++ Y+
Sbjct: 219 IQRILAEKDRHLAGPTAGPNGLYLKEIRYE 248
>gi|307102143|gb|EFN50538.1| hypothetical protein CHLNCDRAFT_138514 [Chlorella variabilis]
Length = 346
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 118/274 (43%), Gaps = 61/274 (22%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ YSG G GLQ + + +TIE + EA+F+AG + P N
Sbjct: 44 VALFVGYSGTGRRGLQMQR-------SSAPEETIEDVLEEAIFQAGGIL------PSN-- 88
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNAR 120
R + G ++R+ S++RV+K +N++ C R
Sbjct: 89 -----RGNLG---------------------------KVRVFSVQRVSKSWNARRECIRR 116
Query: 121 TYSYTCPTYAFATPQDT-KDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCS 179
+YSY P D K+D R + + LQ + F +R DP
Sbjct: 117 SYSYFVPASVLGLALDGGKEDQR----RLHLLQHASSKKGQVQVAWKF--ERDDADPIVR 170
Query: 180 RYIMSFD-CE-----QPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLI 233
R+ + C + V G I L ++G SFMLHQIRKMVG+A+A+ARG +L+
Sbjct: 171 RHFRFIEWCRAGTELEVLVPGGQPCIHLSLQGSSFMLHQIRKMVGMAVAVARGNLPLELL 230
Query: 234 EKTFGLD-QFDLPMAPGLGLLLEQVHYDLYNQKY 266
E + + +LP+AP L+L + + + +
Sbjct: 231 EFSLATPARINLPLAPPSTLMLTGALFSPFKRSW 264
>gi|262282044|ref|ZP_06059813.1| tRNA pseudouridine synthase A [Streptococcus sp. 2_1_36FAA]
gi|262262498|gb|EEY81195.1| tRNA pseudouridine synthase A [Streptococcus sp. 2_1_36FAA]
Length = 249
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 115/252 (45%), Gaps = 31/252 (12%)
Query: 22 FLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLK 81
F F R ++++ +I + L + N Q + A RTD GV AL Q++
Sbjct: 15 FAGFQRQPHARSVQEEIEKTLTR--------INKGQPVVIHGAGRTDSGVHALGQVLHFD 66
Query: 82 LPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDT 137
LPEE ++E A++ PE I +S++RV+ F+++ N +++TY + P++
Sbjct: 67 LPEERDEEKLRFALDTQTPEDIDFISVERVSDDFHARYNKHSKTYEFLV---DIGRPKNP 123
Query: 138 KDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLDP---SCSRYIMSFDCEQP 190
+ T P + + L+ + Q EGTH+F FT+ ++ + + + +D E+
Sbjct: 124 MMRYYATHYPYPLELSLLEEAITQLEGTHDFTGFTASGTSVEDKVRTITEAKVRYDAERN 183
Query: 191 FVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDL--PMAP 248
F + G F+ QIR MVG + I + I++ L P A
Sbjct: 184 F-------LVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPIEQIQRILAEKDRHLAGPTAG 236
Query: 249 GLGLLLEQVHYD 260
GL L+++ Y+
Sbjct: 237 PNGLYLKEIRYE 248
>gi|410696408|gb|AFV75476.1| pseudouridylate synthase I [Thermus oshimai JL-2]
Length = 248
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 117/266 (43%), Gaps = 30/266 (11%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
++ Y G G+ GLQ + G++T++G++ +AL G + P+ +
Sbjct: 6 LLVEYDGSGFAGLQRQ---------RAGLRTVQGELEKALAAIGAL-------PKAVA-- 47
Query: 63 RAARTDKGVSALKQI----VSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
A RTD GV AL + ++P E EA+N LPE ++ LS + V F+++ +
Sbjct: 48 -AGRTDAGVHALAMPFHFDLPGRIPTEKIPEALNRLLPEDLKALSAREVPPTFHARRDAE 106
Query: 119 ARTYSYTCPTYAFATPQDTKDDFRLT-PDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPS 177
+RTY Y +P + + L P ++ L G HNF F +
Sbjct: 107 SRTYLYRLLLRPHPSPLLRQRAWWLKGPLDLRAMEEALPLLLGRHNFLGFAKEEV---RQ 163
Query: 178 CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTF 237
R + E + GLE + L +G SF+ Q+R MVG + I RG K+ ++
Sbjct: 164 GERELYEARLEALEGEVGLE-VRLYFRGNSFLRGQVRGMVGTLVEIGRGKRPKESLKAIL 222
Query: 238 --GLDQFDLPMAPGLGLLLEQVHYDL 261
G + P AP GL + Y+L
Sbjct: 223 ETGERRLAGPSAPPQGLYFVEATYEL 248
>gi|393227193|gb|EJD34883.1| pseudouridine synthase, partial [Auricularia delicata TFB-10046
SS5]
Length = 411
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/285 (27%), Positives = 113/285 (39%), Gaps = 41/285 (14%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ F Y G Y GL S+ + T+E + EAL+K + D P
Sbjct: 51 IALKFCYDGWEYNGLASQ-------GEPTALPTVEAVLQEALYKKRLI--DPNAGPAGCD 101
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKE-----AINEHLPEQIRILSIKRVTKGFNSKN 115
+ R RTDKGVSA Q+VSL + A KE +N LP +RIL+ V F+++
Sbjct: 102 WDRCGRTDKGVSAASQVVSLWI-RTAKKEFPYVSMLNRVLPPSLRILAWAPVADTFSARF 160
Query: 116 NCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
NC R Y Y F +P D D R+ L G H+F N
Sbjct: 161 NCRYRHYKY------FFSP-DGIDLARMRAGAALLL--------GEHDFRNLCKLDAAKQ 205
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
S R + G L + G +F+ HQ+R ++ V + G +L+
Sbjct: 206 ISNFRRRIDRADISEVEGTGGALYVFDLIGTAFLWHQVRHIMAVLFMVGSGAEPVELMRA 265
Query: 236 TFGLDQFD-----------LPMAPGLGLLLEQVHYDLYNQKYGQD 269
+D D MA GL L+L YD + + QD
Sbjct: 266 LLNVDGADAEVETVDRKPEYQMADGLPLVLWDCAYDPADVPWVQD 310
>gi|304314991|ref|YP_003850138.1| tRNA pseudouridine synthase A [Methanothermobacter marburgensis
str. Marburg]
gi|302588450|gb|ADL58825.1| tRNA pseudouridine synthase A [Methanothermobacter marburgensis
str. Marburg]
Length = 273
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 114/261 (43%), Gaps = 41/261 (15%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G Y G Q R + T+EG +++AL +AG + +P + +
Sbjct: 4 IALKVAYIGTNYHGFQ----------RQPDVPTVEGKLLDALKEAGVI-----RSPGDSR 48
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNAR 120
FQ A RTD+GV AL VS EE + IN+ LP I++L+ V F + R
Sbjct: 49 FQIAGRTDRGVHALGNFVSFFTEEEIHVNQINDLLPHDIKVLAWASVMYPFKVRYPLE-R 107
Query: 121 TYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSR 180
Y Y R + + + + GTH+F NF+ +R D + R
Sbjct: 108 HYRYIL--------------HRGESMDIDAMAKAAEHFRGTHDFSNFSRRR---DRNPIR 150
Query: 181 YIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD 240
I V + I + + G+SF+ +RKMV V + ++ G S D + + D
Sbjct: 151 KINDVR-----VSEDDNSILVDVYGESFLWQMVRKMVRVLLLVSEGELSPDDVPRLLDTD 205
Query: 241 Q--FDLPMAPGLGLLLEQVHY 259
+ F P AP L+L + Y
Sbjct: 206 ERVFIDP-APPENLILMDLKY 225
>gi|449454977|ref|XP_004145230.1| PREDICTED: putative tRNA pseudouridine synthase-like [Cucumis
sativus]
Length = 507
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 90/185 (48%), Gaps = 28/185 (15%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQ-GMKTIEGDIMEALFKAGFVTEDSFNTPQNI 59
+ + Y G Y GLQ + RNQ TIE ++ +A++KAG + + ++ I
Sbjct: 74 VVLRIGYVGTDYRGLQMQ--------RNQLSHPTIEQELEDAIYKAGGICDSNYGNLNKI 125
Query: 60 QFQRAARTDKGVSALKQIVSLKL--PEEAN---------KEAINEHLPEQIRILSIKRVT 108
+ R++RTDKGV +L ++LK+ P A + IN +LP+ I++ I
Sbjct: 126 SWARSSRTDKGVHSLATTITLKMEIPGSAWIDDPCGISLADYINSYLPDNIKVFGIVPAQ 185
Query: 109 KGFNSKNNCNARTYSYTCPTYAFATP---QDTKDDFRLTPDQFNFLQALLKQYEGTHNFH 165
K F+ + C+ R YSY P + T+ D ++ + +LK +EG H FH
Sbjct: 186 KRFDPRKECDVRMYSYLLPAKLIGIESKLKTTEIDCHISD-----FKDILKSFEGDHPFH 240
Query: 166 NFTSK 170
N+T +
Sbjct: 241 NYTVR 245
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 70/145 (48%), Gaps = 10/145 (6%)
Query: 180 RYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGL 239
R I+ C + G + I + I G+SFMLHQIRKM+ A+A+ R +D+I T L
Sbjct: 344 RRILYCSCGKLETYFGCDFIEISIWGESFMLHQIRKMIATAVAVKRKLLPRDII--TLSL 401
Query: 240 DQFD---LPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVD---KEVNEFRHKFIL 293
+F LP+AP L+L + ++ G E +E D VNEF IL
Sbjct: 402 TKFSRIVLPIAPAEVLVLRGNSFS-NRKRPGAPMRSELFTLNESDDIVNSVNEFYRSAIL 460
Query: 294 PYLVKTEITEKPMLA-WLELLADHS 317
P + K TE P W+E L ++
Sbjct: 461 PEVTKFLDTESPPWKEWVEKLDKYT 485
>gi|448466547|ref|ZP_21599133.1| tRNA pseudouridine synthase A [Halorubrum kocurii JCM 14978]
gi|445813808|gb|EMA63782.1| tRNA pseudouridine synthase A [Halorubrum kocurii JCM 14978]
Length = 292
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 110/266 (41%), Gaps = 34/266 (12%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ- 60
A AY G Y G Q R T+EG ++ L + G + D + P +
Sbjct: 11 AFRVAYDGREYAGFQ----------RQPHATTVEGTLLRGLAEHGIL--DRGDGPTHATP 58
Query: 61 --FQRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ A RTD GVSA+ Q V+ P+ A N HLP +R+ + V +G ++ ++
Sbjct: 59 PGYAAAGRTDAGVSAVAQTVAFAAPDWLTPRAFNGHLPGSVRVWAAADVPEGLHATHDAT 118
Query: 119 ARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSC 178
RTY Y YA A D D D + ++ L + G H+FHN TS
Sbjct: 119 RRTYRYHL--YAPAR-SDGGDRPHAVDD--DRVRDALARLSGEHDFHNLTSDE------- 166
Query: 179 SRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFG 238
+ + +D L+ +++ F +R++V A+ RG LI++
Sbjct: 167 NGTVRDLTAGATRARD---LLVVEVSADGFPRALVRRLVAAVRAVGRGAADPSLIDRLLA 223
Query: 239 LD----QFDLPMAPGLGLLLEQVHYD 260
+ + + AP L+L V Y+
Sbjct: 224 SEPVPGELGVGPAPPEPLVLWDVSYE 249
>gi|448634352|ref|ZP_21674750.1| tRNA pseudouridine synthase A [Haloarcula vallismortis ATCC 29715]
gi|445749325|gb|EMA00770.1| tRNA pseudouridine synthase A [Haloarcula vallismortis ATCC 29715]
Length = 279
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 113/262 (43%), Gaps = 29/262 (11%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G Y G Q R + T+E + AL + G V E P+ Q+
Sbjct: 3 AYRVAYDGRPYHGFQ----------RQPDVDTVEARLRSALVRLG-VCERGNGLPE--QY 49
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSA Q V+ PE + A N LP+ IR+ + V F++ ++ RT
Sbjct: 50 AAAGRTDAGVSARAQTVAFDAPEWLSPAAFNGELPDDIRVWASADVPAEFHATHDATRRT 109
Query: 122 YSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRY 181
Y+Y A + + R D+ + +A + G+H+FHN TS D + +
Sbjct: 110 YTYYLHAPAGDDGRADRPGHRTVDDE-RWAEA-VDALAGSHDFHNLTS-----DETGTER 162
Query: 182 IMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQ 241
+ D + ++G + + ++ F +R++V +A +A G I++ +
Sbjct: 163 TVDID----WAREG-QFLVARLTAGGFCRQLVRRLVSLAATVADGSAPLSKIDRVLSPEP 217
Query: 242 F----DLPMAPGLGLLLEQVHY 259
+P AP L+L V Y
Sbjct: 218 VRGPDGVPPAPPEPLVLTDVRY 239
>gi|432923365|ref|XP_004080439.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Oryzias
latipes]
Length = 471
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 120/301 (39%), Gaps = 74/301 (24%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G Y G + T+E + EAL K + + Q+
Sbjct: 77 VALRLAYLGWAYQGFAVQ---------ENTDNTVEARLFEALLKTRLIQDR-----QSSN 122
Query: 61 FQRAARTDKGVSALKQIVSLKL-------------PEEANK--------------EAINE 93
+ R RTDKGVSA Q++++ L PE+ + + +N
Sbjct: 123 YHRCGRTDKGVSAFSQVITIDLRSTQFCGGLGVTVPEKVDPSIKSKAASSELPYVKMLNR 182
Query: 94 HLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQA 153
LP+ IRIL V +GF+++ +C +RTY Y P + D L D
Sbjct: 183 VLPQDIRILDCAPVAEGFSARFDCQSRTYRYYFPRGSL--------DVALMEDA------ 228
Query: 154 LLKQYEGTHNFHNFTS----------KRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKI 203
K+YEGTH+F N +R L S I +Q D L ++
Sbjct: 229 -AKRYEGTHDFRNLCKMDVGNGVLQFERTIL----SATIRPMWSQQASSMDQYSLFVFEV 283
Query: 204 KGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD----QFDLPMAPGLGLLLEQVHY 259
KG +F+ HQ+R M+ V + I + +I + ++ + MA L+L H+
Sbjct: 284 KGLAFLYHQVRCMMAVLLLIGQKLEDPQIISQLLDVENNPRKPQYSMAVDYPLVLHHCHF 343
Query: 260 D 260
+
Sbjct: 344 E 344
>gi|302677288|ref|XP_003028327.1| hypothetical protein SCHCODRAFT_42694 [Schizophyllum commune H4-8]
gi|300102015|gb|EFI93424.1| hypothetical protein SCHCODRAFT_42694 [Schizophyllum commune H4-8]
Length = 296
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 99/238 (41%), Gaps = 42/238 (17%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ F Y G Y GL I + T+EG + AL +A V D +
Sbjct: 48 IALKFCYGGWDYGGLA-------IQKDRTPLPTVEGKLFGALVRARLV--DPKGGLEGCG 98
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKE---------AINEHLPEQIRILSIKRVTKGF 111
++R RTD+GVSA Q++SL + ++E IN HLP+ I+IL+ V F
Sbjct: 99 WERCGRTDRGVSAAGQVISLWVRSALSQEELLPHPFTYMINRHLPDPIKILAWSPVDLSF 158
Query: 112 NSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKR 171
+S+ +C R Y Y P P ++A GTH F N
Sbjct: 159 SSRYSCTWRHYKYFFPPVGLDIPA---------------MRAACAYLPGTHEFRNLCK-- 201
Query: 172 KPLDPS-----CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIA 224
+DP+ R I+ + + +KG SF+ H +R ++GV ++I
Sbjct: 202 --IDPTKQLDQFRRDILHASISHVDASNPGGMHVFDLKGSSFLYHMVRNIMGVLLSIG 257
>gi|345317522|ref|XP_001519338.2| PREDICTED: tRNA pseudouridine synthase 3-like [Ornithorhynchus
anatinus]
Length = 734
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 140/337 (41%), Gaps = 78/337 (23%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K + Q
Sbjct: 63 VALRIAYLGWGYQGFASQ---------ENTNNTIEERLFEALTKTRLIERR-----QTAN 108
Query: 61 FQRAARTDKGVSALKQIVSLKL---------PEEANKEA-------------INEHLPEQ 98
+ R RTDKGVSA Q++SL L EE +K+ +N LP
Sbjct: 109 YHRCGRTDKGVSAFGQVISLDLRSQTVRGGQEEEGSKDRMDARTAEIRYTHILNRVLPPD 168
Query: 99 IRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQY 158
IR+L+ V GF+++ NC RTY Y P + D L + ++Y
Sbjct: 169 IRVLAWAPVGSGFSARFNCLQRTYRYFFP----------RADLDL-----EAMDRAAQKY 213
Query: 159 EGTHNFHNFTS----------KRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSF 208
GTH+F N +R L R S + ++ +D L ++ GQ+F
Sbjct: 214 VGTHDFRNLCKMDVANGVTSFQRTILSAQVRRVDQSEETDR---RDPFRLCQFEVTGQAF 270
Query: 209 MLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQ 268
+ HQ+R M+ + + + ++I++ LD P P + +E + LY+ ++
Sbjct: 271 LYHQVRCMMAILFLVGQRMEGPEVIDEL--LDVEKNPRKPQYSMAVE-LPLVLYDCQF-- 325
Query: 269 DGMHESLHFHEVDKEVNEF--RH--KFILPYLVKTEI 301
E L + D+EV EF RH + + V+T++
Sbjct: 326 ----EKLEWI-YDREVQEFNVRHLQQLWASHAVQTQL 357
>gi|400291243|ref|ZP_10793269.1| tRNA pseudouridine synthase A [Streptococcus ratti FA-1 = DSM
20564]
gi|399920390|gb|EJN93208.1| tRNA pseudouridine synthase A [Streptococcus ratti FA-1 = DSM
20564]
Length = 249
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 119/268 (44%), Gaps = 37/268 (13%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G + G Q R +T++ +I + LF+ N+ ++
Sbjct: 7 IISYDGTDFSGFQ----------RQTNARTVQEEIEKTLFR--------LNSGTFVKIHG 48
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV A Q++ L EE + E ++ P+ I ++ + +V++ F+++ ++
Sbjct: 49 AGRTDAGVHAYGQVIHFDLDEERDLERLRFGLDTQTPDDIDVIRVDKVSENFHARYCKHS 108
Query: 120 RTYSYTCPTYAFATP--QDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD-- 175
+TY + P + F D ++A +K+ GTH+F FT+ +D
Sbjct: 109 KTYEFLVDLGRPKNPLMRHYATHFPYVVD-VTAIEAAIKKLRGTHDFTGFTASGTSVDNK 167
Query: 176 -PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+ SR ++FD E +L+ G F+ Q+R MVG + I G + I+
Sbjct: 168 IRTISRADVAFDGEN-------QLLIFTFTGNGFLYKQVRNMVGTLLKIGNGRMPVEQID 220
Query: 235 KTFGLDQFDL--PMAPGLGLLLEQVHYD 260
+ L L P A G GL L+++ YD
Sbjct: 221 RILELKDRHLAGPTAAGNGLYLKEIIYD 248
>gi|363755522|ref|XP_003647976.1| hypothetical protein Ecym_7325 [Eremothecium cymbalariae
DBVPG#7215]
gi|356892012|gb|AET41159.1| hypothetical protein Ecym_7325 [Eremothecium cymbalariae
DBVPG#7215]
Length = 431
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 112/267 (41%), Gaps = 51/267 (19%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ FAY G Y GL I + T+EG I+EA+ K V PQ+
Sbjct: 84 IALKFAYLGWNYNGLA-------IQKEPTPLPTVEGTILEAMSKCKLVPS---MVPQDYN 133
Query: 61 FQRAARTDKGVSALKQIVSLKL-----------PEEANKE-----AINEHLPEQIRILSI 104
F R RTDKGVSA+ Q++SL + P +KE +N+ LP+ IR+ ++
Sbjct: 134 FSRCGRTDKGVSAMNQVISLSVRSNLTAEEQLDPANDSKEIPYVHILNQLLPDDIRVSAV 193
Query: 105 -KRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHN 163
R +GF+++ +C R Y Y F+ + +Q K Y G H+
Sbjct: 194 CLRPPEGFDARFSCKYRHYKYL---------------FKKDSLNIDLMQEAAKMYIGEHD 238
Query: 164 FHNFTSKRKPLDPS--CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAM 221
F NF LD S + Y Q DG ++ + G +F+ HQ+R M+
Sbjct: 239 FRNFCK----LDGSKQITNYKRVILSSQILHIDG-DMYCFDLIGSAFLWHQVRCMMANLF 293
Query: 222 AIARGFTSKDLIEKTFGLDQFDLPMAP 248
I + LI ++ P P
Sbjct: 294 LIGQELEDISLISNLLSPSKY--PQKP 318
>gi|363898118|ref|ZP_09324654.1| tRNA pseudouridine synthase A [Oribacterium sp. ACB7]
gi|361957227|gb|EHL10538.1| tRNA pseudouridine synthase A [Oribacterium sp. ACB7]
Length = 253
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 115/270 (42%), Gaps = 35/270 (12%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ AY G Y G Q R + ++T+ G++ E L + P Q
Sbjct: 4 FVLKLAYEGTNYHGFQ----------RQEELRTVSGEVEEVLSRL---------FPGECQ 44
Query: 61 -FQRAARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKN 115
F A+RTD+GV AL I+S E N E A+N +LPE IR+LS + T+ F+ +
Sbjct: 45 NFIGASRTDQGVHALGNILSFDTEAERNPENYERALNSYLPEDIRVLSAWKKTEDFHPRF 104
Query: 116 NCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNF---HNFTSKRK 172
+ + Y Y+ P F+ + F L+K EG HNFTS
Sbjct: 105 TTHTKEYRYSIDRARVENPL-----FQRLYYHYTFPLDLVKIREGIEILKGEHNFTSFAN 159
Query: 173 PLDPSCSRYIMSFDCEQPF-VKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKD 231
P + + + C F +++ E + +KG F+ H IR + G + + RG S
Sbjct: 160 PKAQTLLQGGSAVRCITDFRLEEEGEYLHFTVKGNGFLYHMIRILCGTLLEVGRGRISPS 219
Query: 232 LIEKTF-GLD-QFDLPMAPGLGLLLEQVHY 259
+ + G D + P AP GL L + Y
Sbjct: 220 ALSEILAGRDRRLAGPTAPAKGLCLLYLDY 249
>gi|160947056|ref|ZP_02094223.1| hypothetical protein PEPMIC_00987 [Parvimonas micra ATCC 33270]
gi|158446190|gb|EDP23185.1| tRNA pseudouridine synthase A [Parvimonas micra ATCC 33270]
Length = 247
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 127/271 (46%), Gaps = 40/271 (14%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ + +Y G +FG Q + + + T++G+I +AL K T +NI
Sbjct: 4 IMLTISYDGSLFFGFQ----------KQKNVVTVQGEIEDALKKI---------TEENIN 44
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEAN----KEAINEHLPEQIRILSIKRVTKGFNSKNN 116
A RTD+GV +L+ I++ K A+N LP +R+L K V++ F+S+ +
Sbjct: 45 IISAGRTDRGVHSLRHIINFHTESNVGVLNFKTALNHFLPIGVRVLDSKEVSENFHSRFD 104
Query: 117 CNARTYSYTCPTYAFATP--QDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
+TY Y P + K +F P ++ + + G +F F R
Sbjct: 105 AKMKTYKYILNLDEVMDPIYYNYKANFPY-PLDIEKMKRAKEYFIGRKSFKAFMGPRTG- 162
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+ + R I SF+ K+ +LI L IKGQSF+ +Q+R MVG + I RG +D +E
Sbjct: 163 NINPIREINSFEI----YKENNDLIFL-IKGQSFIRNQVRIMVGTLVDIGRGLIEEDELE 217
Query: 235 KTFGLDQFD-----LPMAPGLGLLLEQVHYD 260
+ LD D + ++P GL L ++ YD
Sbjct: 218 RI--LDSEDRTRAGVTLSPN-GLYLMEILYD 245
>gi|336254963|ref|YP_004598070.1| tRNA pseudouridine synthase A [Halopiger xanaduensis SH-6]
gi|335338952|gb|AEH38191.1| tRNA pseudouridine synthase A [Halopiger xanaduensis SH-6]
Length = 281
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 108/262 (41%), Gaps = 40/262 (15%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G Y+G Q R + T+E + +AL + +D+ + P +
Sbjct: 6 AFRLAYDGTDYYGFQ----------RQPDVPTVEDAVFDALRSLEVLDQDA-DKPDG--Y 52
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD+GVSAL Q ++ + P+ A+N LP +R + GF++ ++ + R
Sbjct: 53 AAAGRTDRGVSALAQTIAFEAPDWLEPRALNAELPADVRAWASADAPDGFHATHHASRRE 112
Query: 122 YSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRY 181
Y TY P + DD R A G H+FHN T D +
Sbjct: 113 Y-----TYHLHAPPSSVDDERFV--------AACDALSGPHDFHNLTP-----DEHNTER 154
Query: 182 IMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQ 241
+ + +DG + + L + F +R++V +A + G S + +++ +
Sbjct: 155 APTLEA----TRDG-DYLVLTVTAGGFARELVRRLVSLARRVGTGDASLEAVDRALAPEP 209
Query: 242 FD----LPMAPGLGLLLEQVHY 259
+P AP L+L V Y
Sbjct: 210 LPGHEGIPPAPPEPLVLTGVDY 231
>gi|89266772|emb|CAJ81267.1| pseudouridine synthase 3 [Xenopus (Silurana) tropicalis]
Length = 505
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 120/282 (42%), Gaps = 57/282 (20%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ T+E + AL K V + Q
Sbjct: 64 VALRLAYLGWGYQGFASQ---------ENTKNTVEETVFNALIKTRLV-----ESRQTSN 109
Query: 61 FQRAARTDKGVSALKQIVSLKL-------PEEANKEAINEHLPEQIRILSIKRVTKGFNS 113
+ R RTD+GVSAL Q++SL L PE +N LP IR+LS V F++
Sbjct: 110 YHRCGRTDRGVSALGQVISLDLRCSGEGKPEIRYVHILNRVLPPDIRVLSWAAVPPSFSA 169
Query: 114 KNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKP 173
+ +C +RTY Y F+ Q L + + LL EGTH+F N
Sbjct: 170 RFSCRSRTYRYL-----FSCAQ-------LDVEAMDKAARLL---EGTHDFRNLCK---- 210
Query: 174 LDPSCS-----RYIMSFDCEQ----PFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIA 224
+D + R ++S E P +L L+I G +F+ HQ+R ++GV +
Sbjct: 211 MDVANGVMNFIRTVLSARVEPVPEIPGDMGPFQLYRLQITGLAFLYHQVRCIMGVLFLVG 270
Query: 225 RGFTSKDLIEKTFGLDQFDLP------MAPGLGLLLEQVHYD 260
+G ++I T LD P MA L+L H+D
Sbjct: 271 QGKEKPEVI--TELLDVAKNPRKPQYNMAVEFPLVLYNCHFD 310
>gi|354481125|ref|XP_003502753.1| PREDICTED: tRNA pseudouridine synthase 3 [Cricetulus griseus]
gi|344255032|gb|EGW11136.1| tRNA pseudouridine synthase 3 [Cricetulus griseus]
Length = 480
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 121/288 (42%), Gaps = 66/288 (22%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K V + Q
Sbjct: 64 VALKIAYLGWGYQGFASQ---------ENTSNTIEEKLFEALTKTRLV-----ESRQTSN 109
Query: 61 FQRAARTDKGVSALKQIVSLKL---------------PEEANKEA--------INEHLPE 97
+ R RTDKGVSA Q++SL L +EA+ A +N LP
Sbjct: 110 YHRCGRTDKGVSAFGQVISLDLRSQFPRGRDSDDSDLKDEADDVAKEIRYTHILNRVLPA 169
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IR+L+ V GF+++ NC RTY Y P + D + + ++
Sbjct: 170 DIRVLAWAPVEPGFSARFNCLERTYRYFFP----------RADLDIVT-----MNYAAQK 214
Query: 158 YEGTHNFHNFTS----------KRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQS 207
Y GTH+F N +R L S ++++ + ++ +L ++ GQ+
Sbjct: 215 YVGTHDFRNLCKMDVANGVINFQRTIL--SAQVQLVTWSLGEERRQEPFQLCQFEVIGQA 272
Query: 208 FMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
F+ HQ+R M+ + I +G ++I++ +++ P P + +E
Sbjct: 273 FLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEKN--PQKPQYSMAVE 318
>gi|422850155|ref|ZP_16896831.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK115]
gi|325689043|gb|EGD31051.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK115]
Length = 249
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 119/270 (44%), Gaps = 41/270 (15%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G G+ G Q R ++++ +I + L + N Q +
Sbjct: 7 IISYDGYGFAGFQ----------RQPHARSVQEEIEKTLTR--------INKGQPVVIHG 48
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV AL Q++ LPEE ++E A++ PE I +S+++V+ F+S+ N ++
Sbjct: 49 AGRTDSGVHALGQVLHFDLPEERDEEKLRFALDTQTPEDIDFISVEQVSDDFHSRYNKHS 108
Query: 120 RTYSYTCPTYAFATPQDTKDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+TY + P++ T P + + ++ + Q EGTH+F FT+ ++
Sbjct: 109 KTYEFLV---DIGRPKNPMMRHYATHYPYPLELSLIEEAIAQLEGTHDFTGFTASGTSVE 165
Query: 176 P---SCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDL 232
+ + + +D E F + G F+ QIR MVG + I +
Sbjct: 166 DKVRTITEAKVRYDAEHNF-------LVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQ 218
Query: 233 IEKTFGLDQFDL--PMAPGLGLLLEQVHYD 260
I++ L P A GL L+++ Y+
Sbjct: 219 IQRILAEKDRHLAGPTAGPNGLYLKEIRYE 248
>gi|71664275|ref|XP_819120.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70884407|gb|EAN97269.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 621
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 82/157 (52%), Gaps = 25/157 (15%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSF---NTPQ 57
+A++F Y G Y GLQ +L G T+E +++ AL + G ++++++ Q
Sbjct: 89 VAIIFGYVGERYCGLQWNHL--------PGYPTVEEELLRALHRTGMISKENYEQEKVQQ 140
Query: 58 NIQFQRAARTDKGVSALKQIVSLKL-------------PEEANKEAINEHLPEQIRILSI 104
+ ++RA+RTDKGV AL+ ++SL + P+EA + + LP I + I
Sbjct: 141 KLNWERASRTDKGVHALRNVISLNVMLPYAKGSTTEYDPQEARR-ILMTVLPHDIVVYEI 199
Query: 105 KRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDF 141
VT+ FN+ C ARTY Y PT+A + + D+
Sbjct: 200 VPVTRSFNAYMLCGARTYEYYLPTFALMSLDEYSRDY 236
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 11/132 (8%)
Query: 192 VKDGLELITLKIKGQSFMLHQIRKMVGVAMAI-ARGFTSKDLIEKTFG-LDQFDLPMAPG 249
VK GLE++ +++ GQSFML+QIRKM+G ++I A G + + L + + +PMAP
Sbjct: 478 VKTGLEVVRIELHGQSFMLNQIRKMIGAVISICAAGLSPQYLRDHLLNKAVRCGVPMAPA 537
Query: 250 LGLLLEQVHYDLYNQKY----GQDGMHESLHFHEVDK----EVNEFRHKFILPYLVKTEI 301
GL L + + YN + Q G VD+ V FR K I+ +++ E+
Sbjct: 538 NGLFLSYLDFQRYNYRLDRIQSQGGNGSGKGGVYVDRVSSGAVEAFRQK-IVAVILRNEM 596
Query: 302 TEKPMLAWLELL 313
M W+ L
Sbjct: 597 VGDVMGRWMRSL 608
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV 192
+RL+ +Q + + + YEGT+++HNFT + DPSC RY+ S PF+
Sbjct: 361 YRLSSEQLEHARNIFRLYEGTYSYHNFTPGGRASDPSCMRYVTSVTVGDPFL 412
>gi|422822401|ref|ZP_16870594.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK353]
gi|324989944|gb|EGC21886.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK353]
Length = 249
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 119/270 (44%), Gaps = 41/270 (15%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G G+ G Q R ++++ +I + L + N Q +
Sbjct: 7 IISYDGYGFAGFQ----------RQPHARSVQEEIEKTLTR--------INKGQPVVIHG 48
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV AL Q++ LP+E ++E A++ PE I +S++RV+ F+S+ N ++
Sbjct: 49 AGRTDSGVHALGQVLHFDLPDERDEEKLRFALDTQTPEDIDFISVERVSDDFHSRYNKHS 108
Query: 120 RTYSYTCPTYAFATPQDTKDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+TY + P++ T P + ++ + Q EGTH+F FT+ ++
Sbjct: 109 KTYEFLV---DIGRPKNPMMRHYATHYPYPLELRLIEEAIAQLEGTHDFTGFTASGTSVE 165
Query: 176 P---SCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDL 232
+ + + +D E+ F + G F+ QIR MVG + I +
Sbjct: 166 DKVRTITDAKVRYDAERNF-------LVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQ 218
Query: 233 IEKTFGLDQFDL--PMAPGLGLLLEQVHYD 260
I++ L P A GL L+++ Y+
Sbjct: 219 IQRILAEKDRHLAGPTADPNGLYLKEIRYE 248
>gi|224066589|ref|XP_002302151.1| predicted protein [Populus trichocarpa]
gi|222843877|gb|EEE81424.1| predicted protein [Populus trichocarpa]
Length = 465
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 86/321 (26%), Positives = 132/321 (41%), Gaps = 78/321 (24%)
Query: 10 VGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDK 69
V YFG Q Y F L Q T+E +I +AL + D + IQ+ R RTDK
Sbjct: 99 VMYFG-QRFYGFSL---EAQMDPTVESEIFKALETTRLLIGDR----KEIQYSRCGRTDK 150
Query: 70 GVSALKQIVSLKL------------------PEEANKE--------AINEHLPEQIRILS 103
GVSA+ Q+++L L PEE + + +N LP+ IRI+
Sbjct: 151 GVSAVGQVIALYLRSKLKDIDAHNKHSGETVPEEQDGQPGEIDYVRVLNGVLPKDIRIVG 210
Query: 104 IKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFL--QALLKQYEGT 161
V F+++ +C +R Y Y D N L + K+ G
Sbjct: 211 WCPVPSDFSARFSCLSREYKYF-----------------FWNDNLNLLVMETAGKKLIGE 253
Query: 162 HNFHNFTSKRKPLDPSCSRYIMSFD---CE---------------QPFVK---DGLELIT 200
H+F NF + R +MSF+ C+ +P ++ +G +L
Sbjct: 254 HDFRNFCKMDAVKVHNYRRNVMSFEISPCDMSHSSGMGSVKWMITKPSIRTRFEGHQLYA 313
Query: 201 LKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLP---MAPGLGLLLEQV 257
+KIKG +F+ HQ+R MV V I +G S ++I+ P MAP + L+L
Sbjct: 314 IKIKGSAFLWHQVRCMVAVLFMIGQGLESPEVIDALLDTRTLRKPQYLMAPEIPLVLLSC 373
Query: 258 HYDLYNQKYGQDGMHESLHFH 278
++ D ++LH H
Sbjct: 374 EFEGLKFSCSSDA-GQALHVH 393
>gi|150865972|ref|XP_001385404.2| pseudouridine synthase [Scheffersomyces stipitis CBS 6054]
gi|149387228|gb|ABN67375.2| pseudouridine synthase [Scheffersomyces stipitis CBS 6054]
Length = 465
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 118/268 (44%), Gaps = 53/268 (19%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ FAY G Y GL + + T+E +++AL + +TE TP +
Sbjct: 91 IALKFAYLGWNYNGLAYQ-------SEPTPLPTVEEVVLKALTMSRLITEP---TPDKCK 140
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKE----------------AINEHLPEQIRILSI 104
F R RTDKGVSA+ Q++SL + N+E IN LP IR+ ++
Sbjct: 141 FSRCGRTDKGVSAMNQVISLVVRSNLNEEEQLLKENDHKEIKYLSIINALLPPDIRMTAV 200
Query: 105 -KRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHN 163
R F+++ +C+ R Y Y F+ + +Y G+H+
Sbjct: 201 CLRPPPKFDARFSCDYRHYRYL---------------FKKHDLDIELMNEACIKYIGSHD 245
Query: 164 FHNFTSKRKPLDPS--CSRYIMS-FDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVA 220
F NF +D S + Y+ + + +KD + + +KG +F+ HQ+R MV +
Sbjct: 246 FRNFCK----IDGSKQITNYVREVYSMKIIHLKD--DFYAVDLKGSAFLWHQVRCMVAIL 299
Query: 221 MAIARGFTSKDLIEKTFGLDQFDLPMAP 248
I + + +IE F L+++ P P
Sbjct: 300 FLIGQKLEATTIIEDLFDLEKY--PTKP 325
>gi|407850015|gb|EKG04565.1| hypothetical protein TCSYLVIO_004376 [Trypanosoma cruzi]
Length = 573
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 82/157 (52%), Gaps = 25/157 (15%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSF---NTPQ 57
+A++F Y G Y GLQ +L G T+E +++ AL + G ++++++ Q
Sbjct: 41 VAIIFGYVGERYCGLQWNHL--------PGYPTVEEELLRALHRTGMISKENYEQEKVQQ 92
Query: 58 NIQFQRAARTDKGVSALKQIVSLKL-------------PEEANKEAINEHLPEQIRILSI 104
+ ++RA+RTDKGV AL+ ++SL + P+EA + + LP I + I
Sbjct: 93 KLNWERASRTDKGVHALRNVISLNVMLPYAKGSTTEYDPQEA-RRILMTVLPHDIVVYEI 151
Query: 105 KRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDF 141
VT+ FN+ C ARTY Y PT+A + + D+
Sbjct: 152 VPVTRSFNAYMLCGARTYEYYLPTFALMSLDEYSRDY 188
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 11/131 (8%)
Query: 193 KDGLELITLKIKGQSFMLHQIRKMVGVAMAI-ARGFTSKDLIEKTFG-LDQFDLPMAPGL 250
K GLE++ +++ GQSFML+QIRKM+G ++I A G + + L + + +PMAP
Sbjct: 431 KTGLEVVRIELHGQSFMLNQIRKMIGAVISICAAGLSPQYLRDHLLNKAVRCGVPMAPAN 490
Query: 251 GLLLEQVHYDLYNQKY----GQDGMHESLHFHEVDK----EVNEFRHKFILPYLVKTEIT 302
GL L + + YN + Q G VD+ V FR K I+ +++ E+
Sbjct: 491 GLFLSYLDFQRYNYRLDRIQSQGGNGSGKGGVYVDRVSSDAVEAFRQK-IVAVILRNEMV 549
Query: 303 EKPMLAWLELL 313
M W+ L
Sbjct: 550 GDLMGRWMRSL 560
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 33/52 (63%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV 192
+RL+P+Q + + + YEGT+++HNFT + DPSC RY+ S PF+
Sbjct: 313 YRLSPEQLEHARNIFRLYEGTYSYHNFTPGGRASDPSCMRYVTSVTVGDPFL 364
>gi|347800645|ref|NP_001231651.1| pseudouridylate synthase 3 [Sus scrofa]
Length = 479
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 133/320 (41%), Gaps = 74/320 (23%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K V Q
Sbjct: 64 VALKIAYLGWGYQGFASQ---------ENTSNTIEEKLFEALTKTRLV-----ENRQTSN 109
Query: 61 FQRAARTDKGVSALKQIVSLKLPE------------------EANKEA-----INEHLPE 97
+ R RTDKGVSA Q++SL L +A KE +N LP
Sbjct: 110 YHRCGRTDKGVSAFGQVISLDLRSHFLKDKDSEDINLKDEVNDATKEIRYTHILNRVLPP 169
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IR+L+ V F+++ +C RTY Y P D + + ++
Sbjct: 170 DIRVLAWAPVEPSFSARFSCLERTYRYFFP----------HADLDIVT-----MNYAAQK 214
Query: 158 YEGTHNFHNFTS----------KRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQS 207
Y+GTH+F N +R L S ++S E+ ++ +L ++ GQ+
Sbjct: 215 YDGTHDFRNLCKMDVANGVTNFQRTIL--SAQVQLLSQSLEEERWQEAFQLCQFEVVGQA 272
Query: 208 FMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYG 267
F+ HQ+R M+ V I +G ++I++ +++ P P + +E LY+ K+
Sbjct: 273 FLYHQVRCMMAVLFPIGQGMEKPEVIDELLNIEKN--PQKPQYSMAVE-FPLVLYDCKF- 328
Query: 268 QDGMHESLHFHEVDKEVNEF 287
E++ + D+EV EF
Sbjct: 329 -----ENIKWI-YDREVQEF 342
>gi|410722308|ref|ZP_11361613.1| pseudouridylate synthase I [Methanobacterium sp. Maddingley MBC34]
gi|410597279|gb|EKQ51909.1| pseudouridylate synthase I [Methanobacterium sp. Maddingley MBC34]
Length = 274
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 124/262 (47%), Gaps = 41/262 (15%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G ++G Q R ++T+EG+++ AL K+G ++ N Q+
Sbjct: 4 VALKVAYLGTDFYGFQ----------RQPNLRTVEGELISALKKSGAIS----NLGQS-N 48
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNAR 120
+ A RTD+GV AL +VS +E +N+ LP IRIL RV GF ++ + R
Sbjct: 49 YSIAGRTDRGVHALGNVVSFLTDKEPIINQVNDLLPMDIRILGSCRVPLGFKTR-YAHKR 107
Query: 121 TYSYTCPTYAFATPQDTKDDFRLTPDQFNF--LQALLKQYEGTHNFHNFTSKRKPLDPSC 178
Y Y ++ D+++ +Q EGTHNF NF S+R +P
Sbjct: 108 HYRYVLCR-------------KVGEDEWDVDKMQGAAHLMEGTHNFLNF-SRRNERNPMR 153
Query: 179 SRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFG 238
+ F + ++ + ++G+SF+ + +RKM+ V +++ + + ++K F
Sbjct: 154 KVDSVRFTSKN-------QVCLVDVEGESFLWNMVRKMMTVLISVGKHEMGIEDVKKCFD 206
Query: 239 --LDQFDLPMAPGLGLLLEQVH 258
+ PM P +L++ +H
Sbjct: 207 PEYNASITPMPPESLILMDVLH 228
>gi|448328805|ref|ZP_21518111.1| tRNA pseudouridine synthase A [Natrinema versiforme JCM 10478]
gi|445615109|gb|ELY68768.1| tRNA pseudouridine synthase A [Natrinema versiforme JCM 10478]
Length = 285
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 103/238 (43%), Gaps = 26/238 (10%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G Y G Q R + T+E I ++L +A V E+ + P +
Sbjct: 5 AFRIAYDGRDYHGFQ----------RQPDVSTVEDAIFDSL-RALDVLEEDADKPAG--Y 51
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSAL Q ++L+ P+ A+N LP IR + GF++ ++ + R
Sbjct: 52 AAAGRTDAGVSALAQTIALEAPDWLAPRALNAELPADIRAWAAAEAPDGFHATHHASRRK 111
Query: 122 YSYT--CPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCS 179
Y+Y P AT D D F +A + GTH+ HN T P D +
Sbjct: 112 YTYHLYAPPAGEATRDSAADPIAPAVDDDRF-RAACEALSGTHDLHNLT----PDDHNTE 166
Query: 180 RYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTF 237
R +S +DG L+ G F +R++V +A A+ G + + I++
Sbjct: 167 RS-LSLGAR----RDGDYLVVTAAAG-GFARELVRRLVSLARAVGTGESPLEKIDRVL 218
>gi|339449279|ref|ZP_08652835.1| tRNA pseudouridine synthase A [Lactobacillus fructivorans KCTC
3543]
Length = 268
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 127/290 (43%), Gaps = 38/290 (13%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
+ FAY G + G Q + +T+EG + V + + + + I
Sbjct: 7 ITFAYDGTKFAGFQ----------KQPKQRTVEGTLTH------IVNKMAQKSGRQIAIY 50
Query: 63 RAARTDKGVSALKQIVSLKLPEEANKEA----INEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ RTD GV AL Q+ P E ++E+ +N P I IL ++RV F+++ +
Sbjct: 51 GSGRTDAGVHALGQVAHFDFPYELSEESMLKGLNSMCPLDIEILKVQRVNDDFHARYDVT 110
Query: 119 ARTYSYTCPTYAFATP--QDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDP 176
+ Y Y F P ++ +R P F ++ ++ Y GTH+F +F +
Sbjct: 111 GKKYLYRLDLGQFTDPFKRNYTAHWRF-PVDFGRIKLAIQDYVGTHDFSSFVASGA---K 166
Query: 177 SCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKT 236
SR F + + KD E I L+ G FM +QIR MVGV M I +G I++
Sbjct: 167 DGSRVRTVFSVKANWNKDANE-IQLEFYGDGFMYNQIRIMVGVLMEIGQGKRPIHDIKRL 225
Query: 237 FGL---DQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKE 283
+ ++ L M P GL L++V Y G D H S+ H +D +
Sbjct: 226 IKVRDRNEARLTM-PANGLYLKRVFYP------GDDPKH-SVRKHHLDDQ 267
>gi|448679254|ref|ZP_21690091.1| tRNA pseudouridine synthase A [Haloarcula argentinensis DSM 12282]
gi|445771352|gb|EMA22409.1| tRNA pseudouridine synthase A [Haloarcula argentinensis DSM 12282]
Length = 275
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 112/262 (42%), Gaps = 33/262 (12%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G Y G Q R + T+EG + AL + V E P ++
Sbjct: 3 AYRVAYDGRPYHGFQ----------RQPDVDTVEGRLRSALVRLS-VCERGEGLPG--RY 49
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSA Q ++ P + A N LP+ IR+ + V + F++ ++ RT
Sbjct: 50 AAAGRTDAGVSARAQTIAFDAPAWLSPAAFNGELPDDIRVWASADVPENFHATHDAAERT 109
Query: 122 YSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRY 181
Y+Y Y +A P DT D + A + GTH+FHN TS D + +
Sbjct: 110 YTY----YLYA-PTDTDRPGHEPVDDGQWADA-VDALTGTHDFHNLTS-----DDTGTHR 158
Query: 182 IMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQ 241
+ D + +DG + + ++ F +R++V +A A+A G +++ +
Sbjct: 159 TVDID----WARDG-QFLVVQFTAGGFCRQLVRRLVSLAAAVADGSAPLSKVDRILSPEP 213
Query: 242 FD----LPMAPGLGLLLEQVHY 259
+P A L+L V Y
Sbjct: 214 VSGPDGVPPAAPEPLVLTDVRY 235
>gi|417401673|gb|JAA47712.1| Putative pseudouridylate synthase [Desmodus rotundus]
Length = 480
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 135/322 (41%), Gaps = 78/322 (24%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K V + Q
Sbjct: 64 VALKIAYLGWGYQGFASQ---------ENTSNTIEEKLFEALTKTRLV-----ESRQTAN 109
Query: 61 FQRAARTDKGVSALKQIVSLKL----PEEANKE-------------------AINEHLPE 97
+ R RTDKGVSA Q++SL L P++ + E +N LP
Sbjct: 110 YHRCGRTDKGVSAFGQVISLDLRSYFPKDRDSEDLNIKDGVGDAAKEIRYTHILNRVLPA 169
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IR+L+ V F+++ +C RTY Y P + D + + +
Sbjct: 170 DIRVLAWAPVEPSFSARFSCLERTYRYFFP----------RADLDIEA-----MNCAAHK 214
Query: 158 YEGTHNFHNFTSKRKPLDPSCS-----RYIMSFDCE---QPFVKDG----LELITLKIKG 205
Y GTH+F N +D + R I+S + Q +DG +L ++ G
Sbjct: 215 YVGTHDFRNLCK----MDVANGVINFQRTILSAQVKLVGQSLAEDGWQAPFQLCQFEVTG 270
Query: 206 QSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQK 265
Q+F+ HQ+R M+ V I +G ++I++ +++ P P + +E LY+ K
Sbjct: 271 QAFLYHQVRCMMAVLFLIGQGMEEPEIIDELLNVEKN--PQKPQYSMAVE-FPLVLYDCK 327
Query: 266 YGQDGMHESLHFHEVDKEVNEF 287
+ E++ + D+EV EF
Sbjct: 328 F------ENIPW-VYDREVQEF 342
>gi|71413504|ref|XP_808888.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70873184|gb|EAN87037.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 634
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 82/157 (52%), Gaps = 25/157 (15%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSF---NTPQ 57
+A++F Y G Y GLQ +L G T+E +++ AL + G ++++++ Q
Sbjct: 102 VAIIFGYVGERYCGLQWNHL--------PGYPTVEEELLRALHRTGMISKENYEQEKVQQ 153
Query: 58 NIQFQRAARTDKGVSALKQIVSLKL-------------PEEANKEAINEHLPEQIRILSI 104
+ ++RA+RTDKGV AL+ ++SL + P+EA + + LP I + I
Sbjct: 154 KLNWERASRTDKGVHALRNVISLNVMLPYAKGSTTEYDPQEA-RRILMTVLPHDIIVYEI 212
Query: 105 KRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDF 141
VT+ FN+ C ARTY Y PT+A + + D+
Sbjct: 213 VPVTRSFNAYMLCGARTYEYYLPTFALMSLDEYSRDY 249
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 88/182 (48%), Gaps = 13/182 (7%)
Query: 144 TPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE--QPFVKDGLELITL 201
TP + F +G ++ ++ KR+ + F C + VK GLE++ +
Sbjct: 441 TPSRCYFPDDEQVSLQGQNDENSIEEKREQMREHMQHVYGDFSCGGVEGSVKTGLEVVRI 500
Query: 202 KIKGQSFMLHQIRKMVGVAMAI-ARGFTSKDLIEKTFG-LDQFDLPMAPGLGLLLEQVHY 259
++ GQSFML+QIRKM+G ++I A G + + L + + +PMAP GL L + +
Sbjct: 501 ELHGQSFMLNQIRKMIGAVISICAAGLSPQYLRDHLLNKAVRCGVPMAPANGLFLSYLDF 560
Query: 260 DLYN------QKYGQDGMHES-LHFHEVDKE-VNEFRHKFILPYLVKTEITEKPMLAWLE 311
YN Q G +G + ++ V + V FRHK I+ +++ E+ M W+
Sbjct: 561 QRYNYRLERIQSQGGNGSGKCGVYVDRVSSDAVEAFRHK-IVAVILRNEMVGDVMGRWMR 619
Query: 312 LL 313
L
Sbjct: 620 SL 621
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 33/52 (63%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV 192
+RL+P+Q + + + YEGT+++HNFT + DPSC RY+ S PF+
Sbjct: 374 YRLSPEQLEHARNIFRLYEGTYSYHNFTPGGRASDPSCMRYVTSVTVGDPFL 425
>gi|261329198|emb|CBH12177.1| pseudouridylate synthase I, putative [Trypanosoma brucei gambiense
DAL972]
Length = 618
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 86/370 (23%), Positives = 143/370 (38%), Gaps = 108/370 (29%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFV--TEDSFNTPQN 58
+ + Y G + GLQ + T+EG +++AL AG V + + +
Sbjct: 24 IGLCVMYCGTAFRGLQ-------LQAHAPTHHTVEGVLIQALKDAGIVDGVQRGRVSGEE 76
Query: 59 IQFQRAARTDKGVSALKQIVSLKLPEEANKEA---------INEHLPEQIRILSIKRVTK 109
F R+ RTD+GV A++ +V L +P + A +N HLP +R+ + V
Sbjct: 77 HHFARSCRTDRGVHAVRNLVCLFVPNSKLEAAGGCDRLPQLLNAHLPSTVRVERVTTVMG 136
Query: 110 GFNSKNNCNARTYSYTCPTYAFATPQDTKDDF---------------------RLTPDQF 148
F + C +R Y Y P YA +P + ++F L P++
Sbjct: 137 DFIPRFCCVSRIYRYMIPVYALLSPCSSWNEFYAEFPQAVETLRCRAQGGSFIDLCPNEE 196
Query: 149 NFLQALLK------------QYEGTHNFHNF----------------------TSKR--- 171
+ L A L+ GTH FHNF TS R
Sbjct: 197 DKLLAALRDVVSRGNGLLAHHVVGTHRFHNFSVSPGERYGHGWNRKVVMPNDNTSVRTVM 256
Query: 172 -------------KPLDPSCSRYIMSFD----------------CEQPFVKDGL-ELITL 201
+ + P+ S Y S E+ F + L +
Sbjct: 257 RCEIAPRLFLFPQEAIGPTRSEYAKSLKIFEGDTAAEGERVVAVSERTFPETALLPYLLF 316
Query: 202 KIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDL-PMAPGLGLLLEQVHYD 260
+I+G+SF+ + IRK+VG+ +A+ RG + L+++T ++ L P+AP L L Y
Sbjct: 317 QIEGRSFLFNMIRKIVGLIIAVLRG-ARESLMQETLSAERHALCPLAPDSFLYLFHSFYT 375
Query: 261 LYNQKYGQDG 270
Y+ + + G
Sbjct: 376 SYDNRVRRSG 385
>gi|389847378|ref|YP_006349617.1| tRNA pseudouridine synthase A [Haloferax mediterranei ATCC 33500]
gi|448617153|ref|ZP_21665808.1| tRNA pseudouridine synthase A [Haloferax mediterranei ATCC 33500]
gi|388244684|gb|AFK19630.1| tRNA pseudouridine synthase A [Haloferax mediterranei ATCC 33500]
gi|445748502|gb|ELZ99948.1| tRNA pseudouridine synthase A [Haloferax mediterranei ATCC 33500]
Length = 270
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 106/262 (40%), Gaps = 41/262 (15%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G + G Q R + T+E I +A G ED+ T +
Sbjct: 3 AFRVAYDGRPFHGFQ----------RQPDVPTVEDAIFDACRSLGVCDEDADPT----AY 48
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSAL Q V+ + P A+N LP +R + V F++++ R
Sbjct: 49 AAAGRTDAGVSALAQTVAFECPNWCTPRALNSELPATVRAWAAADVPDDFHARHRPTRRE 108
Query: 122 YSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRY 181
Y Y P D + A+L + G H+FHN T P D R
Sbjct: 109 Y-----VYDLHAPSDAF--------DDDRAAAVLDELRGEHDFHNLT----PDDWGTVRT 151
Query: 182 IMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQ 241
I + +DG + + ++++ F +R++V + A+A G + ++ G +
Sbjct: 152 I-----DGDLSRDG-DFLVIRVEAGGFARELVRRLVSLVRAVASGAAPMEKVDDVLGSEH 205
Query: 242 FD----LPMAPGLGLLLEQVHY 259
+ +P AP L+L V Y
Sbjct: 206 LEGPDGVPPAPPTPLVLTAVDY 227
>gi|422879628|ref|ZP_16926093.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK1059]
gi|422929474|ref|ZP_16962415.1| tRNA pseudouridine synthase A [Streptococcus sanguinis ATCC 29667]
gi|422932443|ref|ZP_16965374.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK340]
gi|332365537|gb|EGJ43297.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK1059]
gi|339614714|gb|EGQ19404.1| tRNA pseudouridine synthase A [Streptococcus sanguinis ATCC 29667]
gi|339618194|gb|EGQ22792.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK340]
Length = 249
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 118/270 (43%), Gaps = 41/270 (15%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G G+ G Q R ++++ +I + L + N Q +
Sbjct: 7 IISYDGYGFAGFQ----------RQPHARSVQEEIEKTLTR--------INKGQPVVIHG 48
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV AL Q++ LPEE ++E A++ PE I + ++RV+ F+S+ N ++
Sbjct: 49 AGRTDSGVHALGQVLHFDLPEERDEEKLRFALDTQTPEDIDFIRVERVSDDFHSRYNKHS 108
Query: 120 RTYSYTCPTYAFATPQDTKDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+TY + P++ T P + ++ + Q EGTH+F FT+ ++
Sbjct: 109 KTYEFLVD---IGRPKNPMMRHYATHYPYPLELGLIEEAIAQLEGTHDFTGFTASGTSVE 165
Query: 176 P---SCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDL 232
+ + + +D E+ F + G F+ QIR MVG + I +
Sbjct: 166 DKVRTITEAKVRYDAERNF-------LVFTFSGNGFLYKQIRNMVGTLLKIGNKRMLVEQ 218
Query: 233 IEKTFGLDQFDL--PMAPGLGLLLEQVHYD 260
I++ L P A GL L+++ Y+
Sbjct: 219 IQRILAEKDRHLAGPTAGPNGLYLKEIRYE 248
>gi|444731902|gb|ELW72237.1| tRNA pseudouridine synthase 3 [Tupaia chinensis]
Length = 479
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 116/289 (40%), Gaps = 70/289 (24%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ T+E + EAL K V + Q
Sbjct: 65 VALRIAYLGWGYQGFASQ---------ENTSNTVEEQLFEALTKTRLV-----ESRQTSN 110
Query: 61 FQRAARTDKGVSALKQIVSL----KLPEEANKEAI-----------------NEHLPEQI 99
+ R RTD+GVSA Q++SL +LP E + N LP I
Sbjct: 111 YHRCGRTDRGVSAFGQVISLDLRSQLPRGRGSEDVHVEGTDTAQEIRYTHILNRVLPPDI 170
Query: 100 RILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYE 159
R+L+ V GF+++ +C RTY Y P + D + + ++Y
Sbjct: 171 RVLAWAPVEPGFSARFSCLERTYRYFFP----------RADL-----DVESMNSAAQKYV 215
Query: 160 GTHNFHNFTS----------KRKPLDPSCSRYIMS---FDCEQPFVKDGLELITLKIKGQ 206
GTH+F NF +R L R S + PF +L ++ GQ
Sbjct: 216 GTHDFRNFCKMDVANGVVNFQRTVLSAQVQRVGQSPGEHTQQAPF-----QLCQFQVTGQ 270
Query: 207 SFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
+F+ HQ+R M+ V I +G ++I++ LD P P + +E
Sbjct: 271 AFLYHQVRCMMAVLFLIGQGLERPEVIDEL--LDIESNPQKPQYSMAVE 317
>gi|422824343|ref|ZP_16872530.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK405]
gi|422825584|ref|ZP_16873763.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK678]
gi|422856450|ref|ZP_16903106.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK1]
gi|422863376|ref|ZP_16910007.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK408]
gi|422866275|ref|ZP_16912900.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK1058]
gi|324992392|gb|EGC24313.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK405]
gi|324996086|gb|EGC27997.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK678]
gi|327460621|gb|EGF06956.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK1]
gi|327472350|gb|EGF17781.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK408]
gi|327488890|gb|EGF20688.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK1058]
Length = 249
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 119/270 (44%), Gaps = 41/270 (15%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G G+ G Q R ++++ +I + L + N Q +
Sbjct: 7 IISYDGYGFAGFQ----------RQPHARSVQEEIEKTLTR--------INKGQPVVIHG 48
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV AL Q++ LPEE ++E A++ PE I +S+++V+ F+S+ N ++
Sbjct: 49 AGRTDSGVHALGQVLHFDLPEERDEEKLRFALDTQTPEDIDFISVEQVSDDFHSRYNKHS 108
Query: 120 RTYSYTCPTYAFATPQDTKDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+TY + P++ T P + ++ + Q EGTH+F FT+ ++
Sbjct: 109 KTYEFLVD---IGRPKNPMMRHYATHYPYPLELGLIEEAIAQLEGTHDFTGFTASGTSVE 165
Query: 176 P---SCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDL 232
+ + + +D E+ F + G F+ QIR MVG + I +
Sbjct: 166 DKVRTITEAKVRYDAERNF-------LVFTFSGNGFLYKQIRNMVGTLLKIGNKRMLVEQ 218
Query: 233 IEKTFGLDQFDL--PMAPGLGLLLEQVHYD 260
I++ L P A GL L+++ Y+
Sbjct: 219 IQRILAEKDRHLAGPTAGPNGLYLKEIRYE 248
>gi|357119878|ref|XP_003561660.1| PREDICTED: putative tRNA pseudouridine synthase-like [Brachypodium
distachyon]
Length = 522
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 89/184 (48%), Gaps = 22/184 (11%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ + Y G Y GLQ + TIE + A+FKAG + E ++ Q +
Sbjct: 79 VVLRVGYVGSEYRGLQKQREL-------SADSTIESVLESAIFKAGGILESNYGKLQKVG 131
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEA---------INEHLPEQIRILSIKRVTK 109
++R++RTDKGV +L ++SLK+ P+ A + IN +LP I++ SI +
Sbjct: 132 WERSSRTDKGVHSLATMISLKMEIPDRAWENDPDGIALANFINSNLPNNIKVFSILPAQR 191
Query: 110 GFNSKNNCNARTYSYTCPTYAFATPQD-TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFT 168
F+ + C R Y Y P + ++ +FN ++LK +EG H FHN+T
Sbjct: 192 SFDVRRECLYREYFYLLPAEIIGIKSGCSSEEVEEHLIEFN---SILKGFEGNHPFHNYT 248
Query: 169 SKRK 172
++ K
Sbjct: 249 ARAK 252
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 76/147 (51%), Gaps = 5/147 (3%)
Query: 174 LDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLI 233
L S R I++ C + G++ + L I G SFMLHQIRKMVG A+A+ RG K++I
Sbjct: 341 LSASHFRDIITCSCGELQSSSGIQFVELTICGVSFMLHQIRKMVGTAVAVKRGLLPKEII 400
Query: 234 EKTFG-LDQFDLPMAPGLGLLLEQVHYDLYNQKYG--QDGMHESLHFHEVDKEVNEFRHK 290
E + + LP+AP L+L + N++ + G+ EV K V EF
Sbjct: 401 ELSLAKFSRIVLPIAPSEVLILRDNSFCTRNKQGSIVRPGIQSINESKEVKKGVMEFYKA 460
Query: 291 FILPYLVK-TEITEKPMLAWLELLADH 316
++P L K + +E P W+E L DH
Sbjct: 461 ALVPELAKYLDASEPPWEEWVENL-DH 486
>gi|335045936|ref|ZP_08538959.1| tRNA pseudouridine synthase A [Oribacterium sp. oral taxon 108 str.
F0425]
gi|333759722|gb|EGL37279.1| tRNA pseudouridine synthase A [Oribacterium sp. oral taxon 108 str.
F0425]
Length = 253
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 113/270 (41%), Gaps = 35/270 (12%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ AY G Y G Q R + ++T+ G++ E L + P Q
Sbjct: 4 FVLKLAYEGTNYHGFQ----------RQEELRTVSGEVEEVLSRL---------FPGECQ 44
Query: 61 -FQRAARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKN 115
F A+RTD+GV AL I+S E N E A+N +LPE IR+LS + T+ F+ +
Sbjct: 45 NFIGASRTDQGVHALGNILSFDTEAERNPENYERALNSYLPEDIRVLSAWKKTEDFHPRF 104
Query: 116 NCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNF---HNFTSKRK 172
+ + Y Y+ P F+ + F L+K EG H+FTS
Sbjct: 105 TTHTKEYRYSIDRARVENPL-----FQRLYYHYTFPLDLVKIREGIEILKGEHDFTSFAN 159
Query: 173 PLDPSCSRYIMSFDCEQPF-VKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKD 231
P + + + C F +++ E + +KG F+ H IR + G + + RG S
Sbjct: 160 PKAQTLLQGGSAVRCITDFRLEEEGEYLYFTVKGNGFLYHMIRILCGTLLEVGRGRISPS 219
Query: 232 LIEKTFGLDQFDL--PMAPGLGLLLEQVHY 259
+ + L P AP GL L + Y
Sbjct: 220 ALSEILAGKDRRLAGPTAPAKGLCLLHLDY 249
>gi|339243255|ref|XP_003377553.1| putative tRNA pseudouridine synthase tag-124 [Trichinella spiralis]
gi|316973638|gb|EFV57202.1| putative tRNA pseudouridine synthase tag-124 [Trichinella spiralis]
Length = 471
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 89/375 (23%), Positives = 143/375 (38%), Gaps = 85/375 (22%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFC-RNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNI 59
+A+M AY G G FC +N T+E I +AL + + + +
Sbjct: 39 IALMVAYLGWDLDG----------FCAQNNSQNTVESKIFKALIETKLI-----QSLETA 83
Query: 60 QFQRAARTDKGVSALKQIVSLKL--------------------PEEANKEA--------- 90
+ R RTDK VSA Q++SL + P+ +++
Sbjct: 84 NYSRCGRTDKTVSAFSQVLSLDVRSNQTTGVGVFEPDGYCPNEPKPTSRKTTPKSEELDY 143
Query: 91 ---INEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFR----- 142
+N LP++IR+L+ V + FN++ NC +R Y Y P A T DF
Sbjct: 144 AKILNSVLPQEIRVLAWAPVERTFNARYNCTSRQYKYFFPKGALNLKVSTVVDFLHFSAI 203
Query: 143 ----------LTPDQFNFLQALLKQYEGTHNFHNFTS--KRKPLDPSCSRYIMSFDCEQP 190
F ++ K+ G H+F NF K SC R + FD +
Sbjct: 204 VALFSNFRRGTICVYFQLMEQASKRLIGEHDFRNFCKIDMSKNEIQSCVRTV--FDVQFT 261
Query: 191 FVKDG----LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD----QF 242
V G L I +F+ HQIR ++ V AI G D+IE + +
Sbjct: 262 KVNAGGLNSRTLCCFTIVANAFLWHQIRCIMSVLFAIGEGKEQPDVIEWLLNTELCPAKP 321
Query: 243 DLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEIT 302
M G L+L YD + + + E + + + ++ + +K EI
Sbjct: 322 QYSMVVGWPLVLYGCQYDNLEWHWKEGIIMECISNLQ----------RTLVNFAIKVEII 371
Query: 303 EKPMLAWLELLADHS 317
E M + L L+ ++S
Sbjct: 372 ENMMNSLLSLMPNNS 386
>gi|269124177|ref|YP_003306754.1| tRNA pseudouridine synthase A [Streptobacillus moniliformis DSM
12112]
gi|268315503|gb|ACZ01877.1| tRNA pseudouridine synthase A [Streptobacillus moniliformis DSM
12112]
Length = 244
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 118/245 (48%), Gaps = 35/245 (14%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ +++ Y G ++G Q R + T++G I + L +SFN + +
Sbjct: 4 IKIIYQYDGSAFYGSQ----------RQKDKVTVQGTIEDILI-------NSFN--EKVN 44
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEAN----KEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ RTD+GV A Q+ + + ++ K I ++ I+ILSI++V +NS+ +
Sbjct: 45 MISSGRTDRGVHAKMQVSNFIINKDIKLDIIKSKIEKYSNYAIKILSIEKVDIKYNSRFD 104
Query: 117 CNARTYSYTCPTYAFATPQD----TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRK 172
C RTY + TP + T ++ + ++ N +LKQ+ G HNF NF+ K
Sbjct: 105 CMERTYEFILSNRENITPFNRKYITSINYEIDVEKLN---DILKQFIGKHNFSNFSKKEN 161
Query: 173 PLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDL 232
+ + R I ++C KD + I + IKG SF+ +R ++G +AI G SK
Sbjct: 162 KANKNPIREI--YEC-YSIKKD--KNIHIYIKGNSFLKSMVRIIIGTTLAIYSGKISKHF 216
Query: 233 IEKTF 237
I++ F
Sbjct: 217 IKEAF 221
>gi|326692205|ref|ZP_08229210.1| tRNA pseudouridine synthase A [Leuconostoc argentinum KCTC 3773]
Length = 261
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 122/272 (44%), Gaps = 38/272 (13%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRN--QGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
+ AY G +FG Q + +N + +T++G++ A+ + TP I+
Sbjct: 7 VVAYDGSEFFGFQVQ-------TKNGVERQRTVQGELNRAVNQMA-----KLPTPA-IKV 53
Query: 62 QRAARTDKGVSALKQIVSLKLP----EEANKEAINEHLPEQIRILSIKRVTKGFNSKNNC 117
A+RTD GV A Q+V LP E ++ +N LP I I +++V F+++ N
Sbjct: 54 VGASRTDTGVHAFGQVVHFDLPFDIQPEGVRKGLNTLLPRDIMIKQVEKVADDFHARFNT 113
Query: 118 NARTYSYTCPTYAFATPQDTKDDF-RLTPDQFNF------LQALLKQYEGTHNFHNFTSK 170
+A+ Y Y T QD D F R F++ +QA L G H+F +F +
Sbjct: 114 HAKRYIYRVST------QDFTDPFKRRYTGHFHWRLDVARIQAALPDLLGEHDFASFAAS 167
Query: 171 RKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSK 230
+ R I D E VK + + +G +F+ +QIR MVGV + I G
Sbjct: 168 GNQT-ATTVRTITRADVE---VKPDEQELVFTFEGNAFLYNQIRIMVGVLLEIGNGRRDV 223
Query: 231 DLIEKTFGLDQFDLP--MAPGLGLLLEQVHYD 260
I + + + AP GL L++++YD
Sbjct: 224 HDIVRLIAVKDREQARFTAPASGLYLDEIYYD 255
>gi|348508841|ref|XP_003441961.1| PREDICTED: tRNA pseudouridine synthase 3-like [Oreochromis
niloticus]
Length = 467
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 122/302 (40%), Gaps = 75/302 (24%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G Y G + T+E + EAL K + + Q+
Sbjct: 76 VALRLAYLGWAYQGFA---------VQENTDNTVEARLFEALLKTRLIQDR-----QSSN 121
Query: 61 FQRAARTDKGVSALKQIVSL-------------KLPEEANKEA---------------IN 92
+ R RTDKGVSA Q++++ LPE + +N
Sbjct: 122 YHRCGRTDKGVSAFSQVITIDLRSTQFCAGLGITLPENVDVSTKATSSATSELPYVKMLN 181
Query: 93 EHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQ 152
LP+ IR+L V +GF+++ +C +RTY Y P + +
Sbjct: 182 RVLPQDIRVLDWAPVAEGFSARFDCQSRTYRYYFPRGSL---------------DVALMA 226
Query: 153 ALLKQYEGTHNFHNFTSKRKPLDPSCS-----RYIMSFDCE--QP---FVKDGLELITLK 202
K+YEGTH+F N +D R I+S + QP D +L +
Sbjct: 227 EAAKRYEGTHDFRNLCK----MDVGNGVLQFERTILSATVKPAQPQHASSTDQYDLFIFE 282
Query: 203 IKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQ--VHYD 260
IKG +F+ HQ+R M+ V + I + + D+I + LD + P P + ++ V YD
Sbjct: 283 IKGLAFLYHQVRCMMAVLLLIGQKLEALDIINQL--LDVENNPRKPQYSMAVDYPLVLYD 340
Query: 261 LY 262
+
Sbjct: 341 CH 342
>gi|296216591|ref|XP_002754614.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Callithrix jacchus]
Length = 477
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 117/285 (41%), Gaps = 63/285 (22%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K V + Q
Sbjct: 64 VALKIAYMGWGYQGFASQ---------ENTNNTIEEKLFEALTKTRLV-----ESRQTSN 109
Query: 61 FQRAARTDKGVSALKQIVSLKL---------------PEEANKEA-----INEHLPEQIR 100
+ R RTDKGVSA Q++SL L EEA +E +N LP IR
Sbjct: 110 YHRCGRTDKGVSAFGQVISLDLRSQFPRRRDSEDFNVKEEAAEEIRYTHILNRVLPPDIR 169
Query: 101 ILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEG 160
IL+ V F+++ +C RTY Y P + D + + ++Y G
Sbjct: 170 ILAWAPVEPSFSARFSCLERTYRYFFP----------RADLDIVT-----MDYAAQKYVG 214
Query: 161 THNFHNFTS----------KRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFML 210
TH+F N +R L S D E+ V +L ++ GQ+F+
Sbjct: 215 THDFRNLCKMDVANGVINFQRTILSAQVQPVGQSPDEERWQVP--FQLCQFEVTGQAFLY 272
Query: 211 HQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
HQ+R M+ + I +G ++I++ +++ P P + +E
Sbjct: 273 HQVRCMMAILFLIGQGMEKPEIIDELLNIEKN--PQKPQYSMAVE 315
>gi|448357622|ref|ZP_21546319.1| tRNA pseudouridine synthase A [Natrialba chahannaoensis JCM 10990]
gi|445648515|gb|ELZ01469.1| tRNA pseudouridine synthase A [Natrialba chahannaoensis JCM 10990]
Length = 293
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 113/279 (40%), Gaps = 50/279 (17%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G GY+G Q R + T+E + +AL + D+ + P +
Sbjct: 3 AFRLAYDGTGYYGFQ----------RQPDVSTVEDAMFDALRALDVLAPDA-DKPAG--Y 49
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSAL Q V+ + P+ A N LP IR + F++ ++ R
Sbjct: 50 AAAGRTDAGVSALAQTVAFEAPDWLTPRAFNGQLPADIRAWAAADAPDEFHATHHARKRE 109
Query: 122 YSYTCPTYAFATP--------QDTKDDFRLTP--------DQFNFLQALLKQYEGTHNFH 165
Y+Y Y +A P DT + TP D+F QA G+H+FH
Sbjct: 110 YTY----YLYAPPANDDALPASDTDEGHAATPVTAHAVDDDRF---QAACDALSGSHDFH 162
Query: 166 NFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIAR 225
N T P D + R S E +DG LI L + F +R++V +A +
Sbjct: 163 NLT----PDDHNTQR---SPGLES--TRDGHFLI-LTVTAGGFCRELVRRLVSLARNVGT 212
Query: 226 GFTSKDLIEKTFGLDQF----DLPMAPGLGLLLEQVHYD 260
G IE+ D + AP L+L V Y+
Sbjct: 213 GEADLQTIERALESDPLPGHEGIAPAPPEPLVLTDVEYE 251
>gi|422884806|ref|ZP_16931254.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK49]
gi|332359236|gb|EGJ37057.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK49]
Length = 249
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 119/270 (44%), Gaps = 41/270 (15%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G G+ G Q R ++++ +I + L + N Q +
Sbjct: 7 IISYDGYGFAGFQ----------RQPHARSVQEEIEKTLTR--------INKGQPVVIHG 48
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV AL Q++ LPEE ++E A++ PE I + +++V+ F+S+ N ++
Sbjct: 49 AGRTDSGVHALGQVLHFDLPEERDEEKLRFALDTQTPEDIDFIRVEQVSDDFHSRYNKHS 108
Query: 120 RTYSYTCPTYAFATPQDTKDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+TY + P++ T P + + ++ + Q EGTH+F FT+ ++
Sbjct: 109 KTYEFLV---DIGRPKNPMMRHYATHYPYPLELSLIEEAIAQLEGTHDFTGFTASGTSVE 165
Query: 176 P---SCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDL 232
+ + + +D E+ F + G F+ QIR MVG + I +
Sbjct: 166 DKVRTITEAKVRYDAERKF-------LVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQ 218
Query: 233 IEKTFGLDQFDL--PMAPGLGLLLEQVHYD 260
I++ L P A GL L+++ Y+
Sbjct: 219 IQRILAEKDRHLAGPTAGPNGLYLKEIRYE 248
>gi|333986897|ref|YP_004519504.1| tRNA pseudouridine synthase A [Methanobacterium sp. SWAN-1]
gi|333825041|gb|AEG17703.1| tRNA pseudouridine synthase A [Methanobacterium sp. SWAN-1]
Length = 271
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 117/261 (44%), Gaps = 35/261 (13%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A AY G ++G Q R +T+E +++ A KA + + P++ +
Sbjct: 4 VAFKVAYIGTDFYGFQ----------RQPNRRTVEEELLNAFKKANLMDD-----PKSSR 48
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNAR 120
+ A RTD+GV A+ +VS + IN++L ++I+I+ V F + +R
Sbjct: 49 YSIAGRTDRGVHAMGNVVSFVTDSKVIINQINDYLVDEIQIIGKAEVPYNFKPR-FAESR 107
Query: 121 TYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSR 180
Y Y P D +D N + K +EGTHNF NF SKR P
Sbjct: 108 YYRYVL----VDDPLDGRD------LDVNKMIKASKIFEGTHNFSNF-SKRNERSP---- 152
Query: 181 YIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARG-FTSKDLIEKTFGL 239
I + + K G LI + + G+SF+ + +R+MV V + + RG ++ E +
Sbjct: 153 -IRTIEDINIIEKKG--LIMVDVVGESFLWNMVRRMVAVLLKVGRGQMELNEVAELLNSI 209
Query: 240 DQFDLPMAPGLGLLLEQVHYD 260
+ + P GL+L V YD
Sbjct: 210 SYAPIFLVPPDGLILMDVKYD 230
>gi|397774563|ref|YP_006542109.1| Pseudouridine synthase I, TruA, alpha/beta domain protein
[Natrinema sp. J7-2]
gi|397683656|gb|AFO58033.1| Pseudouridine synthase I, TruA, alpha/beta domain protein
[Natrinema sp. J7-2]
Length = 287
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 115/266 (43%), Gaps = 32/266 (12%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G Y+G Q + + T+E + +AL +A V + + P +
Sbjct: 5 AFRIAYDGTDYYGFQRQP--------QPDIPTVEDAVFDAL-RALSVLDPEADKPAG--Y 53
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSAL Q ++L++P+ A+N LP +R + GF++ ++ + R
Sbjct: 54 AAAGRTDAGVSALAQTIALEVPDWLTPRALNAELPADVRAWAAADAPDGFHATHHASRRA 113
Query: 122 YSY--TCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCS 179
Y+Y P A P D T D F +A GTH+ HN T P D +
Sbjct: 114 YTYHLYAPPADAAMPDSAVDVTAPTVDDERF-RAACDALSGTHDIHNLT----PDDRNTE 168
Query: 180 RYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGL 239
R ++ E +DG + + + + F +R++V + A+ G + I++ L
Sbjct: 169 RS-LTIAVE----RDG-DYLVITVSAGGFARELVRRLVSLVRAVGAGDSPLAKIDRV--L 220
Query: 240 DQFDLP------MAPGLGLLLEQVHY 259
+ LP AP L+L V Y
Sbjct: 221 ESEPLPGHEGIAPAPPEPLVLTAVDY 246
>gi|363742565|ref|XP_417852.3| PREDICTED: tRNA pseudouridine synthase 3 [Gallus gallus]
Length = 459
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 84/341 (24%), Positives = 135/341 (39%), Gaps = 83/341 (24%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K V + Q
Sbjct: 68 VALRIAYLGWGYQGFASQ---------ENTSNTIEEKLFEALKKTRLVDDR-----QTSN 113
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKEA-------------------------INEHL 95
+ R RTDKGVSA Q++SL L ++E +N L
Sbjct: 114 YHRCGRTDKGVSAFGQVISLDLRSNLSEEKKLNGCTGDSEGKSSKSEEELRYTHILNRVL 173
Query: 96 PEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALL 155
P IR+L+ V F+++ +C RTY Y P +
Sbjct: 174 PPDIRVLAWAPVEPDFSARFSCLKRTYRYFFPCADL---------------DVALMHTAA 218
Query: 156 KQYEGTHNFHNFTSKRKPLDPSCS-----RYIMSFDC------EQPFVKDGLELITLKIK 204
++Y GTH+F N +D + R I+S + ++D L ++
Sbjct: 219 QRYVGTHDFRNLCK----MDVANGVINFQRTILSAQVTWADGGAESGLRDPFRLCQFEVT 274
Query: 205 GQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQ 264
GQ+F+ HQ+R M+ + I + ++I++ LD P P + +E LY+
Sbjct: 275 GQAFLYHQVRCMMAILFLIGQRMEGPEIIDEL--LDVEKNPRKPQYSMAVE-FPLVLYDC 331
Query: 265 KYGQDGMHESLHFHEVDKEVNEFR----HKFILPYLVKTEI 301
++ E++ +H D+EV EF + Y VKT++
Sbjct: 332 EF------ENIQWH-YDREVQEFNVTHLQQLWASYAVKTQV 365
>gi|209882282|ref|XP_002142578.1| tRNA pseudouridine synthase A family protein [Cryptosporidium muris
RN66]
gi|209558184|gb|EEA08229.1| tRNA pseudouridine synthase A family protein [Cryptosporidium muris
RN66]
Length = 332
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 123/285 (43%), Gaps = 48/285 (16%)
Query: 6 AYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAA 65
+Y G Y+G+ + N+ + TIE + A + + ++ R
Sbjct: 32 SYIGTNYYGMAYQ---------NETIPTIEREFYNACLRLKLIK-----NREDCDLIRCG 77
Query: 66 RTDKGVSALKQIVSLKLPEEAN-----KEAINEHLPEQIRILSIKRVTKGFNSKNNCNAR 120
RTDKGV + +S+ L +E IN LP IRIL +V F+++ +C++R
Sbjct: 78 RTDKGVHSTGNYISINLRTRDTSPYNYQEMINGVLPWDIRILGFCQVNNNFSARFDCDSR 137
Query: 121 TYSYTCPTYAFATPQDTKDDF--RLTPDQFNFLQALLKQYEGTHNFHNFTS---KRKPLD 175
Y Y P Q+ + ++ +L + + + KQ+ GTH+F F K +P +
Sbjct: 138 VYKYIFPI---DQIQNFEHNYFPKLNINHIDQMNKSCKQFIGTHDFRVFCKMDIKNRP-N 193
Query: 176 PSCSRYIMSFDCEQPFVKDGL------------ELITLKIKGQSFMLHQIRKMVGVAMAI 223
+ R I F E F + + +L + I G +F+ HQ+R MVG+ I
Sbjct: 194 QTYVRTIYDFRVE-VFNNNKISSSSFDNSINDTKLGVITIIGSAFLWHQVRLMVGILFEI 252
Query: 224 ARGFTSKDLIEKTFGLDQFD------LPMAPGLGLLLEQVHYDLY 262
+ G + I K + FD PMA +GL+L ++ Y
Sbjct: 253 SLGKIRSECITKLLD-NYFDKDEIPFFPMASEIGLILWDCNFKEY 296
>gi|156088547|ref|XP_001611680.1| tRNA pseudouridine synthase A family protein [Babesia bovis]
gi|154798934|gb|EDO08112.1| tRNA pseudouridine synthase A family protein [Babesia bovis]
Length = 248
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 102/251 (40%), Gaps = 60/251 (23%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ M F+Y G GY GL + + T+EG + AL A V D N
Sbjct: 13 LLMDFSYIGTGYHGLAYQ---------SDEPNTVEGHLFRALSLAN-VASDVLNN----G 58
Query: 61 FQRAARTDKGVSALKQIVSL-------------KLPEEAN----------KEAINEHLPE 97
++R RTD+ V AL S P+E +AIN+HLP
Sbjct: 59 YERCGRTDRDVHALHNYASFFPDPCPPNSPCSTVSPDERGVGPCYRINTFTKAINKHLPR 118
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IR+ +K V F+S+ NC R Y Y F+L + +Q +
Sbjct: 119 GIRVNWVKHVPDDFSSRRNCTFRVYKYF---------------FQLGSMDLSLIQDACRH 163
Query: 158 YEGTHNFHNF--TSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRK 215
+ G HNF+ F T R P D + I SF+ E + L I G++F+ HQ+R
Sbjct: 164 FLGQHNFNQFCKTDNRNPKDSHGT--IYSFEVE----RYNELLCVATICGRAFLWHQVRC 217
Query: 216 MVGVAMAIARG 226
M+GV + G
Sbjct: 218 MMGVLFKVGEG 228
>gi|281338704|gb|EFB14288.1| hypothetical protein PANDA_016156 [Ailuropoda melanoleuca]
Length = 479
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 82/320 (25%), Positives = 131/320 (40%), Gaps = 74/320 (23%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K V + Q
Sbjct: 64 VALKIAYMGWGYQGFASQ---------ENTNNTIEEKLFEALTKTRLV-----ESRQTSN 109
Query: 61 FQRAARTDKGVSALKQIVSLKLPE------------------EANKEA-----INEHLPE 97
+ R RTDKGVSA Q++SL L +A KE +N LP
Sbjct: 110 YHRCGRTDKGVSAFGQVISLDLRSHFLKGRASEDFHVKDEVSDAAKEIRYTHILNRVLPP 169
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IR+L+ V F+++ +C RTY Y P + D + + ++
Sbjct: 170 DIRVLAWAPVEPSFSARFSCLERTYRYFFP----------RADLDIVT-----MNYAAQK 214
Query: 158 YEGTHNFHNFTS----------KRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQS 207
Y GTH+F N +R L S D E ++ +L ++ GQ+
Sbjct: 215 YVGTHDFRNLCKMDVANGVINFQRTILSAQVQLVGQSLDKET--WQEAFQLCQFEVTGQA 272
Query: 208 FMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYG 267
F+ HQ+R M+ + I +G ++I++ +++ P P + +E LY+ K+
Sbjct: 273 FLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEKN--PQKPQYSMAVE-FPLVLYDCKF- 328
Query: 268 QDGMHESLHFHEVDKEVNEF 287
E++ + D+EV EF
Sbjct: 329 -----ENIQWI-YDREVQEF 342
>gi|300175270|emb|CBK20581.2| unnamed protein product [Blastocystis hominis]
Length = 310
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 104/239 (43%), Gaps = 41/239 (17%)
Query: 28 NQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLPEEAN 87
N +++E +++ LF + + ++R +RTDKGVSA +VS KL + +
Sbjct: 18 NDTRQSVEDKLVDCLFMLDKIEPWNVIKSSKFDWERCSRTDKGVSARSIVVSGKLMDYDD 77
Query: 88 K-----------EAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQD 136
+ E +N+ LPE IR+ S RV+K FN N + RTYSY P + +
Sbjct: 78 EFDSSMQNQLAVEQLNQLLPEDIRVFSYTRVSKSFNPHLNTHTRTYSYYLPLDQYQSSHY 137
Query: 137 TKD---DFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCS---------RYIMS 184
+ + D F Q L + GTH+ N++ + SCS R ++
Sbjct: 138 APSRIIELGVHIDTAKF-QKALSVFLGTHSMKNYSGSIQYSLLSCSCDYFVVIEIRISVN 196
Query: 185 FDCE-----------------QPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARG 226
CE P + + + G SF+ HQIRKM+G A+A++ G
Sbjct: 197 STCEPCSCYFHLCHFSNHIAATPLTIGNERYLHVLLNGNSFLYHQIRKMIGGAVAVSCG 255
>gi|301782183|ref|XP_002926505.1| PREDICTED: tRNA pseudouridine synthase 3-like [Ailuropoda
melanoleuca]
Length = 480
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 82/320 (25%), Positives = 131/320 (40%), Gaps = 74/320 (23%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K V + Q
Sbjct: 64 VALKIAYMGWGYQGFASQ---------ENTNNTIEEKLFEALTKTRLV-----ESRQTSN 109
Query: 61 FQRAARTDKGVSALKQIVSLKLPE------------------EANKEA-----INEHLPE 97
+ R RTDKGVSA Q++SL L +A KE +N LP
Sbjct: 110 YHRCGRTDKGVSAFGQVISLDLRSHFLKGRASEDFHVKDEVSDAAKEIRYTHILNRVLPP 169
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IR+L+ V F+++ +C RTY Y P + D + + ++
Sbjct: 170 DIRVLAWAPVEPSFSARFSCLERTYRYFFP----------RADLDIVT-----MNYAAQK 214
Query: 158 YEGTHNFHNFTS----------KRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQS 207
Y GTH+F N +R L S D E ++ +L ++ GQ+
Sbjct: 215 YVGTHDFRNLCKMDVANGVINFQRTILSAQVQLVGQSLDKET--WQEAFQLCQFEVTGQA 272
Query: 208 FMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYG 267
F+ HQ+R M+ + I +G ++I++ +++ P P + +E LY+ K+
Sbjct: 273 FLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEKN--PQKPQYSMAVE-FPLVLYDCKF- 328
Query: 268 QDGMHESLHFHEVDKEVNEF 287
E++ + D+EV EF
Sbjct: 329 -----ENIQWI-YDREVQEF 342
>gi|398016885|ref|XP_003861630.1| pseudouridylate synthase-like protein [Leishmania donovani]
gi|322499857|emb|CBZ34930.1| pseudouridylate synthase-like protein [Leishmania donovani]
Length = 696
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 75/148 (50%), Gaps = 18/148 (12%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTP--QN 58
+ + YSG G+ GLQ I T+EG +++AL AG + E P ++
Sbjct: 27 IGLCVLYSGSGFRGLQ-------IQAHAPTCHTVEGVLIQALKDAGIIAEVVRGRPAGEH 79
Query: 59 IQFQRAARTDKGVSALKQIVSLKLPEEANKE---------AINEHLPEQIRILSIKRVTK 109
F R+ RTD+GV A++ +VSL +P+E +E +N LP +R+ ++ +++
Sbjct: 80 HHFARSCRTDRGVHAIRNMVSLFVPKEVFEEMGQAEGICEKLNRQLPSTVRVANVMQLSG 139
Query: 110 GFNSKNNCNARTYSYTCPTYAFATPQDT 137
F ++ CN R Y Y P YA P DT
Sbjct: 140 SFIPRHCCNRRVYRYMLPLYALLPPCDT 167
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 195 GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMAPGLGLL 253
L + +I+G SF+L+ IRK++G +A+ RG + ++E F + + P+APG L
Sbjct: 362 ALPFLFFQIEGCSFLLNMIRKIIGSVLAVCRG-ARESILEDAFSPERRVTTPLAPGPYLY 420
Query: 254 LEQVHYDLYNQKYGQDG 270
L Q Y Y++ G G
Sbjct: 421 LAQSTYHGYDRSIGGAG 437
>gi|57640862|ref|YP_183340.1| tRNA pseudouridine synthase A [Thermococcus kodakarensis KOD1]
gi|62901178|sp|Q5JI92.1|TRUA_PYRKO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|57159186|dbj|BAD85116.1| tRNA pseudouridine synthase A [Thermococcus kodakarensis KOD1]
Length = 267
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 114/263 (43%), Gaps = 42/263 (15%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G ++G Q R G++T+EG+I++ L K G + +P+
Sbjct: 3 LALRVAYDGSAFYGFQ----------RQPGVRTVEGEIIKVLQKLGII-----ESPEKND 47
Query: 61 FQRAARTDKGVSALKQIVSL---KLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNC 117
F+ A+RTD+GVSA +VS + P+ A E +N HL + + +L I V F+ +
Sbjct: 48 FKGASRTDRGVSAFFNVVSFVPSERPDLARPEVLNHHLSD-VWVLGIAEVPDDFHPRFWA 106
Query: 118 NARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPS 177
+TY Y F + ++ + G H+F F DP
Sbjct: 107 KFKTYRYYLVNEGF---------------DLSAMRECASLFVGRHDFSAFAKLEPGRDPI 151
Query: 178 CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTF 237
+ E+ V + + ++++G+SF+ +R++V G + +E+
Sbjct: 152 R-------EVERVEVIERQGYLVIEVQGKSFLWEMVRRIVNALRFCGLGLLEAEEVERML 204
Query: 238 -GLDQFDLPMAPGLGLLLEQVHY 259
G +P AP GL+L + Y
Sbjct: 205 SGEYGKKIPPAPPEGLVLWHIEY 227
>gi|323350454|ref|ZP_08086117.1| tRNA pseudouridine synthase A [Streptococcus sanguinis VMC66]
gi|322123391|gb|EFX95069.1| tRNA pseudouridine synthase A [Streptococcus sanguinis VMC66]
Length = 249
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 119/270 (44%), Gaps = 41/270 (15%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G G+ G Q R ++++ +I + L + N Q +
Sbjct: 7 IISYDGYGFAGFQ----------RQPHARSVQEEIEKTLTR--------INKGQPVVIHG 48
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV AL Q++ LPEE ++E A++ PE I +S+++V+ F+S+ N ++
Sbjct: 49 AGRTDSGVHALGQVLHFDLPEERDEEKLRFALDTQTPEDIDFISVEQVSDDFHSRYNKHS 108
Query: 120 RTYSYTCPTYAFATPQDTKDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+TY + P++ T P + ++ + Q EGTH+F FT+ ++
Sbjct: 109 KTYEFLV---DIGRPKNPMMRHYATHYPYPLELGLIEEAIAQLEGTHDFTGFTASGTSVE 165
Query: 176 P---SCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDL 232
+ + + +D E+ F + G F+ QIR MVG + I +
Sbjct: 166 DKVRTITEAKVRYDAERNF-------LVFTFLGNGFLYKQIRNMVGTLLKIGNKRMPVEQ 218
Query: 233 IEKTFGLDQFDL--PMAPGLGLLLEQVHYD 260
+++ L P A GL L+++ Y+
Sbjct: 219 VQRILAEKDRHLAGPTAGPNGLYLKEIRYE 248
>gi|294901661|ref|XP_002777462.1| tRNA pseudouridine synthase, putative [Perkinsus marinus ATCC
50983]
gi|239885099|gb|EER09278.1| tRNA pseudouridine synthase, putative [Perkinsus marinus ATCC
50983]
Length = 387
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 117/270 (43%), Gaps = 51/270 (18%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ Y+GV + Q++ F G+ T+E ++ + L K + + + F R
Sbjct: 63 VLRYAGVAW---QNQEAF--------GVNTVENELFKGLVKTCLI-----ESRMSCDFSR 106
Query: 64 AARTDKGVSALKQIVSLKLPEEANK------EAINEHLPEQIRILSIKRV-TKGFNSKNN 116
RTDKGV A +L+L + + + IN LP+ IR+L I V + F+++ +
Sbjct: 107 CGRTDKGVHARGNYATLRLRLKPDGTEFPYIQMINRVLPDDIRVLRICSVPSDDFDARFS 166
Query: 117 CNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDP 176
C +RTY Y P+ + ++ G H++ NF
Sbjct: 167 CKSRTYKYFFPSTGL---------------DLEVMAEAAQRLVGQHDYRNFCRMDVEQTT 211
Query: 177 SCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE-- 234
+ R I SF+ + +G + I G +F+ HQ+R M+ V M I +G ++I+
Sbjct: 212 NFERTIYSFE-----ICNGDVISHAVITGSAFLWHQVRCMMEVLMLIGKGLEKPEVIDML 266
Query: 235 ----KTFGLDQFDLPMAPGLGLLLEQVHYD 260
KT G +DL A G GL+L YD
Sbjct: 267 FDINKTPGKPSYDL--ADGAGLVLFDCKYD 294
>gi|422872241|ref|ZP_16918734.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK1087]
gi|328944888|gb|EGG39047.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK1087]
Length = 249
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 114/252 (45%), Gaps = 31/252 (12%)
Query: 22 FLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLK 81
F F R ++++ +I + L + N Q + A RTD GV AL Q++
Sbjct: 15 FAGFQRQPHARSVQEEIEKTLTR--------INKGQPVVIHGAGRTDSGVHALGQVLHFD 66
Query: 82 LPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDT 137
LPEE ++E A++ PE I +S+++V+ F+S+ N +++TY + P++
Sbjct: 67 LPEERDEEKLRFALDTQTPEDIDFISVEQVSNDFHSRYNKHSKTYEFLV---DIGRPKNP 123
Query: 138 KDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLDP---SCSRYIMSFDCEQP 190
T P + + ++ + Q EGTH+F FT+ ++ + + + +D E+
Sbjct: 124 MMRHYATHYPYPLELSLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRYDAERK 183
Query: 191 FVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDL--PMAP 248
F + G F+ QIR MVG + I + I++ L P A
Sbjct: 184 F-------LVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILAEKDRHLAGPTAG 236
Query: 249 GLGLLLEQVHYD 260
GL L+++ Y+
Sbjct: 237 PNGLYLKEIRYE 248
>gi|357636391|ref|ZP_09134266.1| tRNA pseudouridine synthase A [Streptococcus macacae NCTC 11558]
gi|357584845|gb|EHJ52048.1| tRNA pseudouridine synthase A [Streptococcus macacae NCTC 11558]
Length = 249
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 114/249 (45%), Gaps = 25/249 (10%)
Query: 22 FLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLK 81
F F + ++T++ +I + L + N+ + ++ A RTD GV A Q++
Sbjct: 15 FSGFQKQVQVRTVQEEIEKTLLR--------LNSGKEVKIHGAGRTDAGVHAYGQVIHFD 66
Query: 82 LPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDT 137
LP+E + E ++ E I ++ +++V F+++ +++TY + P++
Sbjct: 67 LPQERDLEKLRFGLDTQTAEDIDVIKVEQVADDFHARYQKHSKTYEFLVD---LGRPKNP 123
Query: 138 KDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVK 193
T P F+ ++A +++ +GTH+F FT+ ++ R I D E+
Sbjct: 124 LMRHYATHFPYPIDFSAIEAAIEKLQGTHDFTGFTAAGASVENKV-RTISRADVEK---D 179
Query: 194 DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTF--GLDQFDLPMAPGLG 251
D + + G F+ Q+R MVG + I G D I++ G P A G G
Sbjct: 180 DKIGFLIFTFTGNGFLYKQVRNMVGTLLKIGNGRMPIDQIDRILESGDRNLAGPTAAGNG 239
Query: 252 LLLEQVHYD 260
L L+++ YD
Sbjct: 240 LYLKEIIYD 248
>gi|50556320|ref|XP_505568.1| YALI0F18216p [Yarrowia lipolytica]
gi|49651438|emb|CAG78377.1| YALI0F18216p [Yarrowia lipolytica CLIB122]
Length = 443
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 122/264 (46%), Gaps = 54/264 (20%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ F+Y G Y GL ++ + + TIEG I+ A+ + + E + + ++
Sbjct: 86 IAIRFSYLGWNYGGLAVQH-------EDTPLPTIEGTILSAMQRCRLIPESA--SLFDLD 136
Query: 61 FQRAARTDKGVSALKQIVSLKL-----PEEA------NKE-----AINEHLPEQIRILSI 104
F R RTD+GVSA Q+++LK+ PEE NKE +N+ LP IRI S+
Sbjct: 137 FSRCGRTDRGVSAFSQVIALKVRSKLSPEEQQDAANDNKELNYIHILNQLLPPDIRIYSV 196
Query: 105 K-RVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHN 163
R+ +GF+S+ +C R Y Y F + ++ K Y G H+
Sbjct: 197 ALRLPEGFDSRFSCEYRHYRYF---------------FHKGDLDIDLMRQAAKLYLGEHD 241
Query: 164 FHNFTSKRKPLDPS-----CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVG 218
+ NF +D S +R ++ + EQ + D ++ +KG++F+ HQ+R M+
Sbjct: 242 YRNFCK----VDGSKQLAHHNRVMLEAEIEQ--LSD--DIYYFNLKGRAFLWHQVRCMMA 293
Query: 219 VAMAIARGFTSKDLIEKTFGLDQF 242
+ + + +I +++
Sbjct: 294 ILFLVGQKLEKPSVITDLLNPEKY 317
>gi|402895728|ref|XP_003910970.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Papio anubis]
Length = 481
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 120/290 (41%), Gaps = 70/290 (24%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K V + Q
Sbjct: 65 VALRIAYMGWGYQGFASQ---------ENTNNTIEEKLFEALTKTRLV-----ESRQTSN 110
Query: 61 FQRAARTDKGVSALKQIVSLKL---------------PEEANKEA--------INEHLPE 97
+ R RTDKGVSA Q++SL L EEAN A +N LP
Sbjct: 111 YHRCGRTDKGVSAFGQVISLDLRSQFPRGRDSEDFNVKEEANATAEEIRYTHILNRVLPP 170
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IRIL+ V F+++ +C RTY Y P + D + + ++
Sbjct: 171 DIRILAWAPVEPSFSARFSCLERTYRYFFP----------RADLDIVA-----MDYAAQK 215
Query: 158 YEGTHNFHNFTSKRKPLDPSCS-----RYIMSFDCE-------QPFVKDGLELITLKIKG 205
Y GTH+F N +D + R I+S + + ++ +L ++ G
Sbjct: 216 YVGTHDFRNLCK----MDVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTG 271
Query: 206 QSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
Q+F+ HQ+R M+ + I +G ++I++ +++ P P + +E
Sbjct: 272 QAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEKN--PQKPQYSMAVE 319
>gi|390960509|ref|YP_006424343.1| putative pseudouridine synthase [Thermococcus sp. CL1]
gi|390518817|gb|AFL94549.1| putative pseudouridine synthase [Thermococcus sp. CL1]
Length = 267
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 116/266 (43%), Gaps = 48/266 (18%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G ++G Q R G++T+EG+++ AL K + P+
Sbjct: 3 LALRVAYDGTAFYGFQ----------RQPGVRTVEGELIRALTKLRII-----ENPEEND 47
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEAN---KEAINEHLPEQIRILSIKRVTKGFNSKNNC 117
F+ A+RTD+GVSA +VS E A+ E +N HL + +L + V F+ +
Sbjct: 48 FKGASRTDRGVSAFFNVVSFVPGERADLAKPEVLNHHL-RDVWVLGVAEVPDEFHPRFWA 106
Query: 118 NARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALL---KQYEGTHNFHNFTSKRKPL 174
+TY Y L + F+ L+ +L K +EGTH+F F
Sbjct: 107 RGKTYRYY-----------------LVDEGFD-LETMLECAKLFEGTHDFSAFAKLEPGR 148
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
DP R I S Q + G ++ +I G+SF+ +R++V G ++
Sbjct: 149 DP--VRTISSIVMTQ---RGGYYVV--EISGESFLWEMVRRIVNALRFCGLGLLEVGEVK 201
Query: 235 KTF-GLDQFDLPMAPGLGLLLEQVHY 259
G+ +P AP GL+L + Y
Sbjct: 202 SMLEGIYTKKIPPAPAEGLVLWHIDY 227
>gi|157150719|ref|YP_001449723.1| tRNA pseudouridine synthase A [Streptococcus gordonii str. Challis
substr. CH1]
gi|189030148|sp|A8AVB3.1|TRUA_STRGC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|157075513|gb|ABV10196.1| tRNA pseudouridine synthase A [Streptococcus gordonii str. Challis
substr. CH1]
Length = 249
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 113/252 (44%), Gaps = 31/252 (12%)
Query: 22 FLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLK 81
F F R ++++ +I + L + N Q + A RTD GV AL Q++
Sbjct: 15 FAGFQRQPHARSVQEEIEKTLTR--------INKGQPVVIHGAGRTDSGVHALGQVLHFD 66
Query: 82 LPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDT 137
LPEE + E A++ PE I +S+++V+ F+S+ N +++TY + P++
Sbjct: 67 LPEERDGEKLRFALDTQTPEDIDFISVEQVSDDFHSRYNKHSKTYEFLV---DIGRPKNP 123
Query: 138 KDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLDP---SCSRYIMSFDCEQP 190
T P + + L+ + Q EGTH+F FT+ ++ + + + +D E+
Sbjct: 124 MMRHYATHYPYPLELSLLEEAITQLEGTHDFTGFTASGTSVEDKVRTITEAKVRYDAERN 183
Query: 191 FVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDL--PMAP 248
F + G F+ QIR MVG + I + I++ L P A
Sbjct: 184 F-------LVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILAEKDRHLAGPTAG 236
Query: 249 GLGLLLEQVHYD 260
GL L+++ Y+
Sbjct: 237 PNGLYLKEIRYE 248
>gi|226533212|ref|NP_001145731.1| uncharacterized protein LOC100279238 [Zea mays]
gi|219884209|gb|ACL52479.1| unknown [Zea mays]
gi|414867029|tpg|DAA45586.1| TPA: pseudouridylate synthase [Zea mays]
Length = 486
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 119/284 (41%), Gaps = 52/284 (18%)
Query: 33 TIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLPEEANK---- 88
T+E +I +AL +A + + + + R RTDKGVSA Q++SL L
Sbjct: 174 TVESEIFKALERAKLMVANR----KESCYSRCGRTDKGVSATGQVISLYLRSNIKDVGGD 229
Query: 89 -----------EAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDT 137
+ +N LP IR+L V F+++ C +R Y Y
Sbjct: 230 MLDERSEIDYVKVLNRILPRDIRVLGWCPVPADFHARFTCLSREYKYL----------FW 279
Query: 138 KDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFD---CEQPFVKD 194
K D + +Q ++ G H+F NF + R+I F C++ D
Sbjct: 280 KGDLDILE-----MQKAASKFIGEHDFRNFCKMDAANVSNYRRHITEFTISACDRRSNND 334
Query: 195 GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE------KTFGLDQFDLPMAP 248
EL ++ IKG +F+ HQ+R MV V I +G S +++ KT Q+ MAP
Sbjct: 335 --ELCSMTIKGSAFLWHQVRCMVAVLFLIGQGLESPSVVDSLLDIMKTSRKPQYK--MAP 390
Query: 249 GLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFI 292
L L+L+ +D N D SL H D E+RH +
Sbjct: 391 ELPLILQSCLFDKANFMCSADA-SRSLTEHLND----EYRHHML 429
>gi|145350766|ref|XP_001419769.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580001|gb|ABO98062.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 257
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 115/267 (43%), Gaps = 36/267 (13%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ Y G Y G S+ R T+E + +AL K V E + + +
Sbjct: 13 IALHVCYLGWDYHGFASQGAANAAAPR-----TVEQALFDALAKTKLV-ESARDVFKVAD 66
Query: 61 FQRAARTDKGVSALKQIVSLK--------LPEEANKEAI-NEHLPEQIRILSIKRVTKGF 111
+ R RTD+GVS L QIV+L+ + EE + A+ N LP +R L V
Sbjct: 67 YARCGRTDRGVSGLGQIVTLRARSNGAEGVDEELDYVALLNRALPNDVRALGWAPVDDEL 126
Query: 112 NSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKR 171
N++ +C R Y Y F + D ++ + +EG H+F NF
Sbjct: 127 NARFDCEWRQYKY------FFEKTNGLD--------LGAMREAARAFEGVHDFRNFCRMD 172
Query: 172 KPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKD 231
S +R ++ E+ DG +L+ + ++G +F+ HQ+R M V + G S
Sbjct: 173 AENVKSFTRNVLECTIEES--HDG-KLMYINVRGTAFLWHQVRCMASVLFMVGLGHESPT 229
Query: 232 LIEKTFGLDQF----DLPMAPGLGLLL 254
++ + L++ PMAP LLL
Sbjct: 230 VVTELLDLERTPRKPQYPMAPEHALLL 256
>gi|300710278|ref|YP_003736092.1| tRNA pseudouridine synthase A [Halalkalicoccus jeotgali B3]
gi|448294604|ref|ZP_21484683.1| tRNA pseudouridine synthase A [Halalkalicoccus jeotgali B3]
gi|299123961|gb|ADJ14300.1| tRNA pseudouridine synthase A [Halalkalicoccus jeotgali B3]
gi|445586281|gb|ELY40563.1| tRNA pseudouridine synthase A [Halalkalicoccus jeotgali B3]
Length = 266
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 92/204 (45%), Gaps = 37/204 (18%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G Y+G Q R ++T+EG + +AL + VT F + +
Sbjct: 3 AFRIAYDGAPYYGFQ----------RQPDVETVEGVLFDALDR--LVT---FEGEKPAGY 47
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD+GVSAL Q V+ + PE A N LP +R + F+++ + +RT
Sbjct: 48 AAAGRTDRGVSALAQTVAFEAPEWLTPAAFNSELPGTVRAWASADAPDDFHARYDARSRT 107
Query: 122 YSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRY 181
Y+Y Y A D + ++ +L + GTH+FHN T + P + +R
Sbjct: 108 YAY----YLHAPGADVE-----------AIRGVLSRLSGTHDFHNLTPEDGPTTRTITR- 151
Query: 182 IMSFDCEQPFVKDGLELITLKIKG 205
+ E PFV ++TL+ G
Sbjct: 152 -ARANREGPFV-----VLTLRADG 169
>gi|213406756|ref|XP_002174149.1| tRNA pseudouridine synthase [Schizosaccharomyces japonicus yFS275]
gi|212002196|gb|EEB07856.1| tRNA pseudouridine synthase [Schizosaccharomyces japonicus yFS275]
Length = 426
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 129/289 (44%), Gaps = 56/289 (19%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ FAY G Y GL + + T+EG + EAL +A + + P
Sbjct: 74 IALRFAYLGWNYNGLAFQ-------TEPTPLPTVEGKLFEALMRAHLIKD-----PSTCS 121
Query: 61 FQRAARTDKGVSALKQIVSL--KLPEE---ANKEAINEHLPEQIRILSIK-RVTKGFNSK 114
F R RTDKGVSA+ Q+VSL + EE A + +N LPE IR+++ +GF+++
Sbjct: 122 FSRCGRTDKGVSAMGQVVSLNVRYSEERPIAYCDVLNRLLPEDIRVIAYSPNPPEGFDAR 181
Query: 115 NNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
+C R Y Y + P D R++ QA Y G H+F NF +
Sbjct: 182 FSCVRRHYKY---LFLKQYPGGELDIERMS-------QA-AALYLGEHDFRNFCK----I 226
Query: 175 DPSCSRYIMSFD---------CEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIAR 225
D S+ I +++ C P +L ++G +F+ HQ+R M+ + + +
Sbjct: 227 D--ASKQITNYNRGILHSKIICVDP----QKQLYAFDLQGTAFLWHQVRCMMAILFLVGQ 280
Query: 226 GFTSKDLIEKTFGLDQ------FDLPMAPGLGLLLEQVHYDLYNQKYGQ 268
D++ + +++ +D MA L L+L +D +Y Q
Sbjct: 281 HLEPVDIVSELLNVEKNPCKPVYD--MASDLPLVLYDCVFDNIQWEYPQ 327
>gi|422850824|ref|ZP_16897494.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK150]
gi|325695572|gb|EGD37472.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK150]
Length = 249
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 118/270 (43%), Gaps = 41/270 (15%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G G+ G Q R ++++ +I + L + N Q +
Sbjct: 7 IISYDGYGFAGFQ----------RQPHARSVQEEIEKTLTR--------INKGQPVVIHG 48
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV AL Q++ LPEE ++E A++ PE I + +++V+ F+S+ N ++
Sbjct: 49 AGRTDSGVHALGQVLHFDLPEERDEEKLRFALDTQTPEDIDFIRVEQVSDDFHSRYNKHS 108
Query: 120 RTYSYTCPTYAFATPQDTKDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+TY + P++ T P + ++ + Q EGTH+F FT+ ++
Sbjct: 109 KTYEFLV---DIGRPKNPMMRHYATHYPYPLELGLIEEAIAQLEGTHDFTGFTASGTSVE 165
Query: 176 P---SCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDL 232
+ + + +D E+ F + G F+ QIR MVG + I +
Sbjct: 166 DKVRTITEAKVRYDAERNF-------LVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQ 218
Query: 233 IEKTFGLDQFDL--PMAPGLGLLLEQVHYD 260
I++ L P A GL L+++ Y+
Sbjct: 219 IQRILAEKDRHLAGPTAGPNGLYLKEIRYE 248
>gi|125718790|ref|YP_001035923.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK36]
gi|166229844|sp|A3CQB8.1|TRUA_STRSV RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|125498707|gb|ABN45373.1| tRNA pseudouridine synthase A, putative [Streptococcus sanguinis
SK36]
Length = 249
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 119/270 (44%), Gaps = 41/270 (15%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G G+ G Q R ++++ +I + L + N + +
Sbjct: 7 IISYDGYGFAGFQ----------RQPHARSVQEEIEKTLTR--------INKGRPVVIHG 48
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV AL Q++ LPE+ ++E A++ PE I +S+++V+ F+S+ N ++
Sbjct: 49 AGRTDSGVHALGQVLHFDLPEDRDEEKLRFALDTQTPEDIDFISVEQVSDDFHSRYNKHS 108
Query: 120 RTYSYTCPTYAFATPQDTKDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+TY + P++ T P + ++ + Q EGTH+F FT+ ++
Sbjct: 109 KTYEFLV---DIGRPKNPMMRHYATHYPYPLELGLIEEAIAQLEGTHDFTGFTASGTSVE 165
Query: 176 P---SCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDL 232
+ + + FD E+ F + G F+ QIR MVG + I +
Sbjct: 166 DKVRTITEAKVRFDAERNF-------LVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPIEQ 218
Query: 233 IEKTFGLDQFDL--PMAPGLGLLLEQVHYD 260
I++ L P A GL L+++ Y+
Sbjct: 219 IQRILAEKDRHLAGPTAGPNGLYLKEIRYE 248
>gi|194706182|gb|ACF87175.1| unknown [Zea mays]
gi|195612012|gb|ACG27836.1| hypothetical protein [Zea mays]
gi|414867030|tpg|DAA45587.1| TPA: pseudouridylate synthase isoform 1 [Zea mays]
gi|414867031|tpg|DAA45588.1| TPA: pseudouridylate synthase isoform 2 [Zea mays]
gi|414867032|tpg|DAA45589.1| TPA: pseudouridylate synthase isoform 3 [Zea mays]
gi|414867033|tpg|DAA45590.1| TPA: pseudouridylate synthase isoform 4 [Zea mays]
Length = 457
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 119/284 (41%), Gaps = 52/284 (18%)
Query: 33 TIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLPEEANK---- 88
T+E +I +AL +A + + + + R RTDKGVSA Q++SL L
Sbjct: 145 TVESEIFKALERAKLMVANR----KESCYSRCGRTDKGVSATGQVISLYLRSNIKDVGGD 200
Query: 89 -----------EAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDT 137
+ +N LP IR+L V F+++ C +R Y Y
Sbjct: 201 MLDERSEIDYVKVLNRILPRDIRVLGWCPVPADFHARFTCLSREYKYLF----------W 250
Query: 138 KDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFD---CEQPFVKD 194
K D + +Q ++ G H+F NF + R+I F C++ D
Sbjct: 251 KGDLDILE-----MQKAASKFIGEHDFRNFCKMDAANVSNYRRHITEFTISACDRRSNND 305
Query: 195 GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE------KTFGLDQFDLPMAP 248
EL ++ IKG +F+ HQ+R MV V I +G S +++ KT Q+ MAP
Sbjct: 306 --ELCSMTIKGSAFLWHQVRCMVAVLFLIGQGLESPSVVDSLLDIMKTSRKPQYK--MAP 361
Query: 249 GLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFI 292
L L+L+ +D N D SL H D E+RH +
Sbjct: 362 ELPLILQSCLFDKANFMCSADA-SRSLTEHLND----EYRHHML 400
>gi|294897084|ref|XP_002775815.1| pseudouridylate synthase, putative [Perkinsus marinus ATCC 50983]
gi|239882168|gb|EER07631.1| pseudouridylate synthase, putative [Perkinsus marinus ATCC 50983]
Length = 708
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 92/187 (49%), Gaps = 40/187 (21%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ ++G Y GLQ C + +E D++ A+ +AG V D + IQ+
Sbjct: 27 ALVVGFNGTKYRGLQ----MNADNCDR--IDYVESDLLGAMKRAGVVKPDVVRLDE-IQW 79
Query: 62 QRAARTDKGVSALKQIVSLKL-----PE-----EANK---------EAINEHLPEQIRIL 102
R++RTD GVSA + +VS K+ PE +A++ EAIN+ LP +I++
Sbjct: 80 TRSSRTDAGVSAARIVVSAKILVHEAPEVKGNRQADRVNRTYPEVVEAINKELPREIKVF 139
Query: 103 SIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTH 162
+ ++ FN++ +CN R YSY P L D + LQ L ++ H
Sbjct: 140 NCMKICASFNAQKSCNWRHYSYYMP-------------MSLAGD-VDKLQEALGKFTNAH 185
Query: 163 NFHNFTS 169
N+HNFT+
Sbjct: 186 NYHNFTN 192
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 178 CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARG-FTSKDLIEKT 236
C+ I SF + +G + + + ++GQ F+ +QIR M+G +A ARG F S I+
Sbjct: 355 CNSAIHSFTATPIEMGNGEKWVRVDVRGQFFLYNQIRLMIGAGIAYARGVFPSISCIQ-- 412
Query: 237 FGLD---QFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEV 280
F +D +F P+AP GL+L + + + G M H +
Sbjct: 413 FAIDTNYKFHSPLAPACGLILHTSGFTGMDTRAGYAIMEHGHHHSAI 459
>gi|333980376|ref|YP_004518321.1| tRNA pseudouridine synthase A [Desulfotomaculum kuznetsovii DSM
6115]
gi|333823857|gb|AEG16520.1| tRNA pseudouridine synthase A [Desulfotomaculum kuznetsovii DSM
6115]
Length = 248
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 111/267 (41%), Gaps = 30/267 (11%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ + AY G Y G Q + R G+ TI+G + + L + + I+
Sbjct: 4 IKLTIAYDGTNYHGFQEQ--------RGTGLVTIQGVLEKCLRRL---------VGREIR 46
Query: 61 FQRAARTDKGVSALKQIVSL-----KLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKN 115
A RTD GV A Q+V+ +P E A+N LP I L + V F+++
Sbjct: 47 VIGAGRTDAGVHARGQVVNFDACGWSIPTERIVLALNGMLPRDIAALKAEEVGPEFHARY 106
Query: 116 NCNARTYSYTCPTYAFATP-QDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
+ A+TY YT +P F P + ++ GTH+F +F + P+
Sbjct: 107 SALAKTYRYTIYNSRIPSPFWRLYSHFVPRPLDVQAMARAAQRLVGTHDFASFQAAGSPV 166
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+ R + S D ++G EL+ L +G F+ + +R MVG + + G D I
Sbjct: 167 KHTV-RTLFSAD----VCREGKELVHLTFRGDGFLYNMVRIMVGTLIEVGLGKRDPDDIP 221
Query: 235 KTFGLDQFDL--PMAPGLGLLLEQVHY 259
P AP GL LE+V Y
Sbjct: 222 AILAARDRTRAGPTAPPEGLCLERVEY 248
>gi|350588615|ref|XP_003482688.1| PREDICTED: tRNA pseudouridine synthase 3-like [Sus scrofa]
Length = 479
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 132/320 (41%), Gaps = 74/320 (23%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K V Q
Sbjct: 64 VALKIAYLGWGYQGFASQ---------ENTSNTIEEKLFEALTKTRLV-----ENRQTSN 109
Query: 61 FQRAARTDKGVSALKQIVSLKLPE------------------EANKEA-----INEHLPE 97
+ R RTDKGVSA Q++SL L +A KE +N LP
Sbjct: 110 YHRCGRTDKGVSAFGQVISLDLRSHFLKDKDSEDINLKDEVNDATKEIRYTHILNRVLPP 169
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IR+L+ V F+++ +C RTY Y P D + + ++
Sbjct: 170 DIRVLAWAPVEPSFSARFSCLERTYRYFFP----------HADLDIVT-----MNYAAQK 214
Query: 158 YEGTHNFHNFTS----------KRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQS 207
Y GTH+F N +R L S ++S E+ ++ +L ++ GQ+
Sbjct: 215 YVGTHDFRNLCKMDVANGVTNFQRTIL--SAQVQLLSQSLEEERWQEAFQLCQFEVVGQA 272
Query: 208 FMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYG 267
F+ HQ+R M+ V I +G ++I++ +++ P P + +E LY+ K+
Sbjct: 273 FLYHQVRCMMAVLFLIGQGMEKPEVIDELLNIEKN--PQKPQYSMAVE-FPLVLYDCKF- 328
Query: 268 QDGMHESLHFHEVDKEVNEF 287
E++ + D+EV EF
Sbjct: 329 -----ENIKWI-YDREVQEF 342
>gi|395846476|ref|XP_003795929.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Otolemur garnettii]
Length = 480
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 133/320 (41%), Gaps = 74/320 (23%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K V + Q
Sbjct: 64 IALKMAYLGWGYQGFASQ---------ENTNNTIEEKLFEALTKTRLV-----ESRQTSN 109
Query: 61 FQRAARTDKGVSALKQIVSL---------------KLPEEANKEA--------INEHLPE 97
+ R RTDKGVSA Q++SL L +EA+ A +N LP
Sbjct: 110 YHRCGRTDKGVSAFGQVISLDLRSQFPRDRDSEDFNLKDEASSAAKEIRYTHILNRVLPP 169
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IRIL+ V F+++ +C RTY Y P L + N+ ++
Sbjct: 170 DIRILAWAPVEPSFSARFSCLERTYRYFFPHAD------------LDIETMNYA---AQK 214
Query: 158 YEGTHNFHNFTS----------KRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQS 207
Y GTH+F NF +R L S E+ ++ +L ++ GQ+
Sbjct: 215 YVGTHDFRNFCKMDVANGVINFQRTILSAQVQLVGQSLSEER--WQEPFQLCQFEVIGQA 272
Query: 208 FMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYG 267
F+ HQ+R M+ + I +G ++I++ +++ P P + +E LY+ K+
Sbjct: 273 FLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEKN--PQKPQYSMAIE-FPLVLYDCKF- 328
Query: 268 QDGMHESLHFHEVDKEVNEF 287
E++ + D+EV EF
Sbjct: 329 -----ENIKWI-YDREVQEF 342
>gi|422857646|ref|ZP_16904296.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK1057]
gi|327462829|gb|EGF09151.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK1057]
Length = 249
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 117/270 (43%), Gaps = 41/270 (15%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G G+ G Q R ++++ +I + L + N Q +
Sbjct: 7 IISYDGYGFAGFQ----------RQPHARSVQEEIEKTLTR--------INKGQPVVIHG 48
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV AL Q++ LPEE ++E A++ PE I + ++RV+ F+S+ N ++
Sbjct: 49 AGRTDSGVHALGQVLHFDLPEERDEEKLRFALDTQTPEDIDFIRVERVSDDFHSRYNKHS 108
Query: 120 RTYSYTCPTYAFATPQDTKDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+TY + P++ T P + + ++ + Q EGTH+F FT+ ++
Sbjct: 109 KTYEFLV---DIGRPKNPMMRHYATHYPYPLELSLIEEAIAQLEGTHDFTGFTASGTSVE 165
Query: 176 P---SCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDL 232
+ + + D E+ F + G F+ QIR MVG I +
Sbjct: 166 DKVRTITEAKVRHDAERNF-------LVFTFSGNGFLYKQIRNMVGTLFKIGNKRMPVEQ 218
Query: 233 IEKTFGLDQFDL--PMAPGLGLLLEQVHYD 260
I++ L P A GL L+++ Y+
Sbjct: 219 IQRILAEKDRHLAGPTAGPNGLYLKEIRYE 248
>gi|146089460|ref|XP_001470389.1| pseudouridylate synthase-like protein [Leishmania infantum JPCM5]
gi|134070422|emb|CAM68761.1| pseudouridylate synthase-like protein [Leishmania infantum JPCM5]
Length = 696
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 75/148 (50%), Gaps = 18/148 (12%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTP--QN 58
+ + YSG G+ GLQ I T+EG +++AL AG V + P ++
Sbjct: 27 IGLCVLYSGSGFRGLQ-------IQAHAPTCHTVEGVLIQALKDAGIVADVVRGRPAGEH 79
Query: 59 IQFQRAARTDKGVSALKQIVSLKLPEEANKE---------AINEHLPEQIRILSIKRVTK 109
F R+ RTD+GV A++ +VSL +P+E +E +N LP +R+ ++ +++
Sbjct: 80 HHFARSCRTDRGVHAIRNMVSLFVPKEVFEEMGQAEGICEKLNRQLPSTVRVANVMQLSG 139
Query: 110 GFNSKNNCNARTYSYTCPTYAFATPQDT 137
F ++ CN R Y Y P YA P DT
Sbjct: 140 SFIPRHCCNRRVYRYMLPLYALLPPCDT 167
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 195 GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMAPGLGLL 253
L + +I+G SF+L+ IRK++G +A+ RG + ++E F + + P+APG L
Sbjct: 362 ALPFLFFQIEGCSFLLNMIRKIIGSVLAVCRG-ARESILEDAFSPERRVTTPLAPGPYLY 420
Query: 254 LEQVHYDLYNQKYGQDG 270
L Q Y Y++ G G
Sbjct: 421 LAQSTYHGYDRSIGGAG 437
>gi|448347582|ref|ZP_21536453.1| tRNA pseudouridine synthase A [Natrinema altunense JCM 12890]
gi|445630284|gb|ELY83550.1| tRNA pseudouridine synthase A [Natrinema altunense JCM 12890]
Length = 287
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 112/266 (42%), Gaps = 32/266 (12%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G Y G Q + + T+E + +AL +A V + + P +
Sbjct: 5 AFRIAYDGTDYHGFQRQ--------PQPDIPTVEDAVFDAL-RALAVLDPDADKPAG--Y 53
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSAL Q ++L+ P+ A+N LP +R + GF++ ++ + R
Sbjct: 54 AAAGRTDAGVSALAQTIALEAPDWLTPRALNAELPADVRAWAAADAPDGFHATHHASRRA 113
Query: 122 YSYT--CPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCS 179
Y+Y P ATP D D F +A GTH+ HN T P D +
Sbjct: 114 YTYHLYAPPADAATPDSDADATAPAVDDERF-RAACDALSGTHDIHNLT----PDDRNTE 168
Query: 180 RYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGL 239
R ++ E +DG + + + F +R++V + A+ G + IE+ L
Sbjct: 169 RS-LTIAAE----RDG-DYFVVTVSAGGFARELVRRLVSLVRAVGAGDSPLAKIERV--L 220
Query: 240 DQFDLP------MAPGLGLLLEQVHY 259
+ LP AP L+L V Y
Sbjct: 221 EPEPLPGHEGIAPAPPEPLVLTAVDY 246
>gi|426370989|ref|XP_004052438.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Gorilla gorilla
gorilla]
Length = 481
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 120/290 (41%), Gaps = 70/290 (24%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K V + Q
Sbjct: 65 VALRIAYMGWGYQGFASQ---------ENTNNTIEEKLFEALTKTRLV-----ESRQTSN 110
Query: 61 FQRAARTDKGVSALKQIVSLKL---------------PEEANKEA--------INEHLPE 97
+ R RTDKGVSA Q++SL L EEAN A +N LP
Sbjct: 111 YHRCGRTDKGVSAFGQVISLDLRSQFPRGRDSEDFNVKEEANVAAEEIRYTHILNRVLPP 170
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IRIL+ V F+++ +C RTY Y P + D + + ++
Sbjct: 171 DIRILAWAPVEPSFSARFSCLERTYRYFFP----------RADLDIVT-----MDYAAQK 215
Query: 158 YEGTHNFHNFTSKRKPLDPSCS-----RYIMSFDCE-------QPFVKDGLELITLKIKG 205
Y GTH+F N +D + R I+S + + ++ +L ++ G
Sbjct: 216 YVGTHDFRNLCK----MDVANGVINFQRTILSAQVQLVRQSPGEGRWQEPFQLCQFEVTG 271
Query: 206 QSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
Q+F+ HQ+R M+ + I +G ++I++ +++ P P + +E
Sbjct: 272 QAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEKN--PQKPQYSMAVE 319
>gi|448453731|ref|ZP_21594074.1| tRNA pseudouridine synthase A [Halorubrum litoreum JCM 13561]
gi|448485752|ref|ZP_21606897.1| tRNA pseudouridine synthase A [Halorubrum arcis JCM 13916]
gi|445807531|gb|EMA57616.1| tRNA pseudouridine synthase A [Halorubrum litoreum JCM 13561]
gi|445817451|gb|EMA67325.1| tRNA pseudouridine synthase A [Halorubrum arcis JCM 13916]
Length = 305
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 84/187 (44%), Gaps = 19/187 (10%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQN-IQ 60
A AY G GY G Q R T+ ++EAL + G V +T +
Sbjct: 14 AFRVAYDGRGYAGFQ----------RQPHASTVADALLEALAEHGVVERGDGSTHATPVG 63
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNAR 120
+ A RTD GVSA+ Q V+ + P A N HLP +R+ + V GF++ ++ R
Sbjct: 64 YAAAGRTDAGVSAVAQTVAFEAPTWLTPRAFNGHLPGSVRVWAAADVEGGFHATHDAVQR 123
Query: 121 TYSYT--CPTYAFATPQD-TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKR----KP 173
TY Y P + D T+ D D F +A L +++G H+FHN T+ +
Sbjct: 124 TYRYHLYAPESGSESGSDRTRRDPEHAVDDDRF-RAALARFDGEHDFHNLTTDETGTVRD 182
Query: 174 LDPSCSR 180
LD +R
Sbjct: 183 LDARATR 189
>gi|448428370|ref|ZP_21584240.1| tRNA pseudouridine synthase A [Halorubrum terrestre JCM 10247]
gi|445676539|gb|ELZ29059.1| tRNA pseudouridine synthase A [Halorubrum terrestre JCM 10247]
Length = 305
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 84/187 (44%), Gaps = 19/187 (10%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQN-IQ 60
A AY G GY G Q R T+ ++EAL + G V +T +
Sbjct: 14 AFRVAYDGRGYAGFQ----------RQPHASTVADALLEALAEHGVVERGDGSTHATPVG 63
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNAR 120
+ A RTD GVSA+ Q V+ + P A N HLP +R+ + V GF++ ++ R
Sbjct: 64 YAAAGRTDAGVSAVAQTVAFEAPTWLTPRAFNGHLPGSVRVWAAADVEGGFHATHDAVQR 123
Query: 121 TYSYT--CPTYAFATPQD-TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKR----KP 173
TY Y P + D T+ D D F +A L +++G H+FHN T+ +
Sbjct: 124 TYRYHLYAPESGSESGSDRTRRDPEHAVDDDRF-RAALARFDGEHDFHNLTTDETGTVRD 182
Query: 174 LDPSCSR 180
LD +R
Sbjct: 183 LDARATR 189
>gi|109109191|ref|XP_001111887.1| PREDICTED: tRNA pseudouridine synthase 3 [Macaca mulatta]
Length = 480
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 119/287 (41%), Gaps = 64/287 (22%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K V + Q
Sbjct: 64 VALRIAYMGWGYQGFASQ---------ENTNNTIEEKLFEALSKTRLV-----ESRQTSN 109
Query: 61 FQRAARTDKGVSALKQIVSLKL---------------PEEANKEA--------INEHLPE 97
+ R RTDKGVSA Q++SL L EEAN A +N LP
Sbjct: 110 YHRCGRTDKGVSAFGQVISLDLRSQFPRGRDSEDFNVKEEANATAEEIRYTHILNRVLPP 169
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IRIL+ V F+++ +C RTY Y P + D + + ++
Sbjct: 170 DIRILAWAPVEPSFSARFSCLERTYRYFFP----------RADLDIVA-----MDYAAQK 214
Query: 158 YEGTHNFHNFTSK---------RKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSF 208
Y GTH+F N ++ + + R + E + ++ +L ++ GQ+F
Sbjct: 215 YVGTHDFRNLCKMDVANGVINFQRTILSAQVRLVGQSPGEGRW-QEPFQLCQFEVTGQAF 273
Query: 209 MLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
+ HQ+R M+ + I +G ++I++ +++ P P + +E
Sbjct: 274 LYHQVRCMMAILFLIGQGMEKPEIIDELLNIEKN--PQKPQYSMAVE 318
>gi|41056053|ref|NP_956361.1| tRNA pseudouridine synthase 3 [Danio rerio]
gi|29436973|gb|AAH49516.1| Zgc:56653 [Danio rerio]
Length = 460
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/341 (24%), Positives = 137/341 (40%), Gaps = 83/341 (24%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G Y G + T+E + EAL K + + Q
Sbjct: 60 VALRLAYLGWQYQGFA---------VQENTDNTVEARLFEALLKTKLIQDR-----QTSC 105
Query: 61 FQRAARTDKGVSALKQIVSLKL-------------PEEANKEA------------INEHL 95
+ R RTDKGVSA Q++S+ L P + + + +N L
Sbjct: 106 YHRCGRTDKGVSAFSQVISIDLRSTQYGGGLGVTVPADVDVKGKTSADELPYVKILNRVL 165
Query: 96 PEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALL 155
P IRIL V GF+++ +C +RTY Y P + D L +
Sbjct: 166 PHDIRILQWAPVESGFSARFDCQSRTYRYYFP----------RGDLDL-----ELMAEAA 210
Query: 156 KQYEGTHNFHNFTS----------KRKPLDPSCSRYIMSFDCEQPFV-KDGLELITLKIK 204
K+YEGTH+F N +R L S + P V D +L ++K
Sbjct: 211 KRYEGTHDFRNLCKMDVGNGVLQFQRTILSAS----VQPAQLPHPSVHNDPHQLFVFQVK 266
Query: 205 GQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQF----DLPMAPGLGLLLEQVHYD 260
G + + HQ+R M+ + + I + + ++I++ +++ MA L+L H++
Sbjct: 267 GLALLYHQVRCMMALLLLIGQKLEAPEVIDQLLDVEKNPRKPQYSMAVDYPLVLYDCHFE 326
Query: 261 LYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEI 301
N + + + E +H +N F H+ + VKT+I
Sbjct: 327 GVNWR---NEIEEEIHI------LNTF-HQHWVQNAVKTQI 357
>gi|355567201|gb|EHH23580.1| hypothetical protein EGK_07068 [Macaca mulatta]
gi|355752776|gb|EHH56896.1| hypothetical protein EGM_06391 [Macaca fascicularis]
gi|380816966|gb|AFE80357.1| tRNA pseudouridine synthase 3 [Macaca mulatta]
gi|383422019|gb|AFH34223.1| tRNA pseudouridine synthase 3 [Macaca mulatta]
gi|384949702|gb|AFI38456.1| tRNA pseudouridine synthase 3 [Macaca mulatta]
Length = 480
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 119/287 (41%), Gaps = 64/287 (22%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K V + Q
Sbjct: 64 VALRIAYMGWGYQGFASQ---------ENTNNTIEEKLFEALSKTRLV-----ESRQTSN 109
Query: 61 FQRAARTDKGVSALKQIVSLKL---------------PEEANKEA--------INEHLPE 97
+ R RTDKGVSA Q++SL L EEAN A +N LP
Sbjct: 110 YHRCGRTDKGVSAFGQVISLDLRSQFPRGRDSEDFNVKEEANATAEEIRYTHILNRVLPP 169
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IRIL+ V F+++ +C RTY Y P + D + + ++
Sbjct: 170 DIRILAWAPVEPSFSARFSCLERTYRYFFP----------RADLDIVA-----MDYAAQK 214
Query: 158 YEGTHNFHNFTSK---------RKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSF 208
Y GTH+F N ++ + + R + E + ++ +L ++ GQ+F
Sbjct: 215 YVGTHDFRNLCKMDVANGVINFQRTILSAQVRLVGQSPGEGRW-QEPFQLCQFEVTGQAF 273
Query: 209 MLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
+ HQ+R M+ + I +G ++I++ +++ P P + +E
Sbjct: 274 LYHQVRCMMAILFLIGQGMEKPEIIDELLNIEKN--PQKPQYSMAVE 318
>gi|448284702|ref|ZP_21475958.1| tRNA pseudouridine synthase A [Natrialba magadii ATCC 43099]
gi|445569412|gb|ELY23985.1| tRNA pseudouridine synthase A [Natrialba magadii ATCC 43099]
Length = 321
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 112/283 (39%), Gaps = 60/283 (21%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G GY+G Q R + T+E + +AL + D+ + P +
Sbjct: 31 AFRLAYDGTGYYGFQ----------RQPDVPTVEDAMFDALRALDVLAPDA-DKPAG--Y 77
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSAL Q V+ + P+ A N LP IR + F++ ++ R
Sbjct: 78 AAAGRTDAGVSALAQTVAFEAPDWLTPRAFNGELPADIRAWAAADAPDEFHATHHARERE 137
Query: 122 YSYTCPTYAFATP--------QDTKDDFRLTP--------DQFNFLQALLKQYEGTHNFH 165
Y+Y Y +A P DT +D TP D+F QA G H+FH
Sbjct: 138 YTY----YLYAPPANDDAPPASDTDEDHAGTPVTAHTVDDDRF---QAACDALSGPHDFH 190
Query: 166 NFT-----SKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVA 220
N T ++R P+ S +DG I L + F +R++V +A
Sbjct: 191 NLTPDDHNTERSPVLEST--------------RDGHFRI-LTVTAGGFCRELVRRLVSLA 235
Query: 221 MAIARGFTSKDLIEKTFGLDQFD----LPMAPGLGLLLEQVHY 259
+ G + IE+ D + AP L+L V Y
Sbjct: 236 RDVGTGEANLQTIERALESDPLPGHEGIAPAPPEPLVLTDVEY 278
>gi|317419455|emb|CBN81492.1| tRNA pseudouridine synthase 3 [Dicentrarchus labrax]
Length = 472
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 131/331 (39%), Gaps = 97/331 (29%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G Y G + T+E + EAL K + + Q+
Sbjct: 73 VALRLAYLGWSYQGFA---------VQENTDNTVEARLFEALLKTRLIQDR-----QSSN 118
Query: 61 FQRAARTDKGVSALKQIVSL-------------KLPEEANKEA--------------INE 93
+ R RTDKGVSA Q++++ LPE + + +N
Sbjct: 119 YHRCGRTDKGVSAFSQVITIDLRSTQFCGGLGVTLPENVDVRSKNKASGSELPYVKMLNR 178
Query: 94 HLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQA 153
LP+ IRIL +GF+++ +C +RTY Y P + +
Sbjct: 179 VLPQDIRILDWAPAAEGFSARFDCQSRTYRYYFPRGSLDVA---------------LMAE 223
Query: 154 LLKQYEGTHNFHN-----------------FTSKRKPLDPSCSRYIMSFDCEQPFVKDGL 196
K+YEGTH+F N ++ KP+ P +++ S D
Sbjct: 224 AAKRYEGTHDFRNLCKMDVGNGVLQFERTILSASVKPVQP---QHVSS--------TDQY 272
Query: 197 ELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQ 256
EL +IKG +F+ HQ+R M+ + + I + + ++I + +D P P + ++
Sbjct: 273 ELFMFEIKGLAFLYHQVRCMMALLLLIGQKLEAPEIINQL--MDVQSNPRKPQYSMAVDY 330
Query: 257 --VHYDLYNQKYGQDGMHESLHFHEVDKEVN 285
V YD + E L + + ++EVN
Sbjct: 331 PLVLYDCH---------FEGLSWQQENEEVN 352
>gi|342183994|emb|CCC93475.1| conserved hypothetical protein [Trypanosoma congolense IL3000]
Length = 553
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 23/148 (15%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFN---TPQ 57
+A++F Y G Y GLQ +L T+E +++ AL + ++E++++ Q
Sbjct: 23 VAIIFGYIGERYCGLQWNHL--------PNYPTVEEELLRALHRTNMISEENYSQEKVQQ 74
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPEEANKEAINEH------------LPEQIRILSIK 105
+ ++RA+RTDKGV AL+ ++SL L K + +E+ LP I + I
Sbjct: 75 KLNWERASRTDKGVHALRNVISLNLMLPHAKGSASEYDTVEAKRLLMSVLPPDIIVYEII 134
Query: 106 RVTKGFNSKNNCNARTYSYTCPTYAFAT 133
VT+ FN+ C ARTY Y PT+AF +
Sbjct: 135 PVTRSFNAYMMCGARTYEYYIPTFAFMS 162
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 68/133 (51%), Gaps = 13/133 (9%)
Query: 192 VKDGLELITLKIKGQSFMLHQIRKMVGV--AMAIARGFTSKDLIEKTFGLD-QFDLPMAP 248
V +GLE++ +++ GQSF+ +QIRKM+G +M +A G L + + PMAP
Sbjct: 410 VSNGLEVVRIELNGQSFLFNQIRKMIGAVSSMRVA-GLPPAYLRDHFLNRSVRCGTPMAP 468
Query: 249 GLGLLLEQVHYDLYNQKYGQDGMH-------ESLHFHEVDK-EVNEFRHKFILPYLVKTE 300
GL L + + YN + G+ + + ++ VD+ V EFR K I+ +++ E
Sbjct: 469 ANGLFLSYLDFQRYNYRLGRIQLEGDNGRGKDGIYVDRVDQGAVEEFRRK-IVAVVLRNE 527
Query: 301 ITEKPMLAWLELL 313
+ + W+ L
Sbjct: 528 MVTDAIGRWMRSL 540
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 134 PQDTKDD---FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQP 190
P+DT + +R+T + + + YEGTH++HNFT K DPS RYI S P
Sbjct: 281 PEDTMREVARYRITSEDLEETRRIFHLYEGTHSYHNFTPGGKASDPSSVRYITSVTVSDP 340
Query: 191 FVKD 194
FV D
Sbjct: 341 FVID 344
>gi|422861430|ref|ZP_16908070.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK330]
gi|327468298|gb|EGF13783.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK330]
Length = 249
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 118/270 (43%), Gaps = 41/270 (15%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G G+ G Q R ++++ +I + L + N Q +
Sbjct: 7 IISYDGYGFAGFQ----------RQLHARSVQEEIEKTLTR--------INKGQPVVIHG 48
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV AL Q++ LPEE ++E A++ PE I + +++V+ F+S+ N ++
Sbjct: 49 AGRTDSGVHALGQVLHFDLPEERDEEKLRFALDTQTPEDIDFIRVEQVSDEFHSRYNKHS 108
Query: 120 RTYSYTCPTYAFATPQDTKDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+TY + P++ T P + ++ + Q EGTH+F FT+ ++
Sbjct: 109 KTYEFLVD---IGRPKNPMMRHYATHYPYPLELRLIEEAIAQLEGTHDFTGFTASGTSVE 165
Query: 176 P---SCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDL 232
+ + + +D E+ F + G F+ QIR MVG + I +
Sbjct: 166 DKVRTITEAKVRYDAERNF-------LVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQ 218
Query: 233 IEKTFGLDQFDL--PMAPGLGLLLEQVHYD 260
I++ L P A GL L+++ Y+
Sbjct: 219 IQRILAEKDRHLAGPTAGPNGLYLKEIRYE 248
>gi|428182335|gb|EKX51196.1| hypothetical protein GUITHDRAFT_134700 [Guillardia theta CCMP2712]
Length = 706
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 116/264 (43%), Gaps = 48/264 (18%)
Query: 33 TIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLP---EEANKE 89
T+E ++ME +AG + + P+ + RA+RTDKGV A ++S+KL + E
Sbjct: 247 TVEQELMEVCHQAGLIAVLNPENPKQLCLSRASRTDKGVHAALNVISMKLQLNRSTGHDE 306
Query: 90 AINEHLPEQIRILSIKRVT-KGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQF 148
A H+ + S +T ++N C+ RTY Y P+ +T D +
Sbjct: 307 ADGVHVEVKAMTGSQYYLTPPASGARNICSLRTYEYLLPSCLLGA--ETAD----IDQKV 360
Query: 149 NFLQALLKQYEGTHNFHNFTSKRKPLD------PSCS-----------------RYIMS- 184
+ L +LLK++ G F NF + D PS S R I+
Sbjct: 361 DKLNSLLKKFSGNKFFINFCGRDSVSDSLFQTVPSQSNTSDENLDFWRAKKFPKRSIVDS 420
Query: 185 ----FDCE-QPFV---KDG---LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSK--- 230
+ C +P DG + ++I SFMLHQIRKM+G +A+ G +
Sbjct: 421 KRVVYRCHAEPITLHFDDGNASASFVKIEICANSFMLHQIRKMIGTCLAVLHGSIPELYL 480
Query: 231 DLIEKTFGLDQFDLPMAPGLGLLL 254
D+ + G + P+APG GL+L
Sbjct: 481 DMPKALQGDYRLPCPLAPGSGLIL 504
>gi|448341948|ref|ZP_21530902.1| tRNA pseudouridine synthase A [Natrinema gari JCM 14663]
gi|445626658|gb|ELY80000.1| tRNA pseudouridine synthase A [Natrinema gari JCM 14663]
Length = 287
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 114/266 (42%), Gaps = 32/266 (12%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G Y+G Q + + T+E + +AL +A V + + P +
Sbjct: 5 AFRIAYDGTDYYGFQRQP--------QPDIPTVEDAVFDAL-RALSVLDPEADKPAG--Y 53
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSAL Q ++L++P+ A+N LP +R + GF++ ++ + R
Sbjct: 54 AAAGRTDAGVSALAQTIALEVPDWLTPRALNAELPADVRAWAAADAPDGFHATHHASRRA 113
Query: 122 YSY--TCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCS 179
Y+Y P A P D D F +A GTH+ HN T P D +
Sbjct: 114 YTYHLYAPPADAAVPDSAVDVTAPAVDDERF-RAACDALSGTHDIHNLT----PDDRNTE 168
Query: 180 RYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGL 239
R ++ E +DG + + + + F +R++V + A+ G + I++ L
Sbjct: 169 RS-LTIAVE----RDG-DYLVITVSAGGFARELVRRLVSLVRAVGAGDSPLAKIDRV--L 220
Query: 240 DQFDLP------MAPGLGLLLEQVHY 259
+ LP AP L+L V Y
Sbjct: 221 ESEPLPGHEGIAPAPPEPLVLTAVDY 246
>gi|409386794|ref|ZP_11239147.1| tRNA pseudouridine synthase A [Lactococcus raffinolactis 4877]
gi|399206007|emb|CCK20062.1| tRNA pseudouridine synthase A [Lactococcus raffinolactis 4877]
Length = 253
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/263 (25%), Positives = 112/263 (42%), Gaps = 30/263 (11%)
Query: 5 FAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRA 64
AY G + G Q +N G +T++ ++ L K N+ ++ +
Sbjct: 8 IAYDGTDFAGFQ---------IQNNG-RTVQEELERVLAK--------LNSGHPVKLHGS 49
Query: 65 ARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNAR 120
RTD GV AL QI+ LP+ + E A++ P+ I +++++ V F+S+ +++
Sbjct: 50 GRTDSGVHALAQIIHFDLPQARDTEKLRFALDTQTPDDIDVVALELVADDFHSRFKPHSK 109
Query: 121 TYSYTCPTYAFATPQDTKDDFRLTP-DQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCS 179
TY Y T P + + F+ + A + GTH+F FT+ ++
Sbjct: 110 TYQYRLTTSRANNPLTRRFSYHFPKIVAFDDMVAAAQLLVGTHDFTGFTASGATVEDKV- 168
Query: 180 RYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGL 239
R I + V+ G + I G F+ Q+R MVG + I G + +
Sbjct: 169 RTI----TQANVVRSGTDEILFIFSGNGFLYKQVRNMVGTLVKIGAGKWPVSRVSEILVA 224
Query: 240 DQFDL--PMAPGLGLLLEQVHYD 260
DL P AP GL L +V YD
Sbjct: 225 QNRDLAGPTAPAHGLCLMEVRYD 247
>gi|448398880|ref|ZP_21570235.1| tRNA pseudouridine synthase A [Haloterrigena limicola JCM 13563]
gi|445670353|gb|ELZ22955.1| tRNA pseudouridine synthase A [Haloterrigena limicola JCM 13563]
Length = 279
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 111/263 (42%), Gaps = 34/263 (12%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G Y+G Q R + T+E I +AL + G + D+ + P +
Sbjct: 5 AFRIAYDGTDYYGYQ----------RQPDVPTVEDSIFDALRELGVLEPDA-DKPDG--Y 51
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSAL Q ++L+ P+ A+N LP +R + F++ ++ R
Sbjct: 52 AAAGRTDAGVSALAQTIALEAPDWLTPRALNAELPADVRAWASADAPADFHATHHARRRK 111
Query: 122 YSYTCPTYAFATPQDTKDDFRLTP-DQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSR 180
Y TY P DT D + P D FL A + GTH+ N T P D + R
Sbjct: 112 Y-----TYQLYAPSDTPVDSQPAPIDDERFLTA-CEVLSGTHDVANLT----PDDHNTER 161
Query: 181 YIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD 240
++ + +DG L+ G F +R++V +A I G + +E+ +
Sbjct: 162 -TLTLEA----ARDGDYLVITASAG-GFARELVRRLVSLACEIGTGESPLAKLERVLEPE 215
Query: 241 QFDLP----MAPGLGLLLEQVHY 259
P AP L+L V Y
Sbjct: 216 PLPGPEGIAPAPPEPLVLTDVDY 238
>gi|257053070|ref|YP_003130903.1| tRNA pseudouridine synthase A [Halorhabdus utahensis DSM 12940]
gi|256691833|gb|ACV12170.1| tRNA pseudouridine synthase [Halorhabdus utahensis DSM 12940]
Length = 275
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 108/264 (40%), Gaps = 46/264 (17%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G + G Q R + T+ I++AL + V ED N P +
Sbjct: 8 AFRIAYDGRPFHGFQ----------RQPDVATVSDAILDALRELD-VLEDGDNVPPG--Y 54
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSAL Q V+ P+ + A+N LP +R + V F++ ++ AR
Sbjct: 55 AAAGRTDAGVSALAQTVAFDCPDWLSPAALNSELPADVRAWASADVPAEFHATHDAVARE 114
Query: 122 YSY--TCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCS 179
Y+Y P + + D L G H+FHNFT P +
Sbjct: 115 YTYHLHAPDASVSRAGDA-----------------LDALAGEHDFHNFT-------PDDT 150
Query: 180 RYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGL 239
+ E D L ++TL+ G F +R+ V V A+A G D IE+ G
Sbjct: 151 GTVRDLTGEARSEGDFL-VVTLRADG--FPRQFVRRAVTVIDALASGVAELDRIEQLLGD 207
Query: 240 DQFDLP--MAPGL--GLLLEQVHY 259
D + P +AP L+L V Y
Sbjct: 208 DPVEGPAGVAPAAPEALVLTAVEY 231
>gi|407410310|gb|EKF32791.1| hypothetical protein MOQ_003354 [Trypanosoma cruzi marinkellei]
Length = 574
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 82/157 (52%), Gaps = 25/157 (15%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSF---NTPQ 57
+A++F Y G Y GLQ +L T+E +++ AL++ G ++++++ Q
Sbjct: 41 VAIIFGYVGERYCGLQWNHL--------PEYPTVEEELLRALYRTGMISKENYEQEKVQQ 92
Query: 58 NIQFQRAARTDKGVSALKQIVSLKL-------------PEEANKEAINEHLPEQIRILSI 104
+ ++RA+RTDKGV AL+ ++S+ + P+EA + + LP I + I
Sbjct: 93 KLNWERASRTDKGVHALRNVISVNVMLPYAKGSTTEYDPQEA-RRLLMSVLPHDIVVYEI 151
Query: 105 KRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDF 141
VT+ FN+ C ARTY Y PT+A + + D+
Sbjct: 152 VPVTRSFNAYMLCGARTYEYYLPTFALMSLDEYSRDY 188
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 71/132 (53%), Gaps = 11/132 (8%)
Query: 192 VKDGLELITLKIKGQSFMLHQIRKMVGVAMAI-ARGFTSKDLIEKTFG-LDQFDLPMAPG 249
VK GLE++ +++ GQSFML+QIRKM+G +AI A G + + L + + +PMAP
Sbjct: 431 VKTGLEVVRIELHGQSFMLNQIRKMIGAVIAICAAGLSPEYLRDHLLNKAVRCGVPMAPA 490
Query: 250 LGLLLEQVHYDLYN------QKYGQDGMHE-SLHFHEVDKE-VNEFRHKFILPYLVKTEI 301
GL L + + YN Q G +G + ++ V + V FRHK I+ +++ E+
Sbjct: 491 NGLFLSYLDFQRYNYRLDRIQSQGGNGSGKCGVYVDRVSSDAVEAFRHK-IVAVVLRNEM 549
Query: 302 TEKPMLAWLELL 313
M W+ L
Sbjct: 550 VGDVMGRWMRSL 561
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV 192
+RL+P+Q + + YEGT+++HNFT + DPSC RY+ S PF+
Sbjct: 313 YRLSPEQLEHARNTFRLYEGTYSYHNFTPGGRASDPSCMRYVTSVTVGDPFL 364
>gi|218192790|gb|EEC75217.1| hypothetical protein OsI_11484 [Oryza sativa Indica Group]
Length = 722
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 77/147 (52%), Gaps = 10/147 (6%)
Query: 174 LDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLI 233
L+ S R I++F C + + G++ + L I G SFMLHQIRKMVG ++A+ RG KD+I
Sbjct: 541 LNASHFRDILTFSCGELQISSGIQFVELTISGVSFMLHQIRKMVGTSVAVKRGLLPKDII 600
Query: 234 EKTFG-LDQFDLPMAPGLGLLLEQVHYDLYNQ-----KYGQDGMHESLHFHEVDKEVNEF 287
+ + LP+AP L+L + L N+ + G M+ES EV K V EF
Sbjct: 601 ALSLAKFSRIVLPIAPSEVLVLRDNSFCLRNKQGTIVRPGIQSMNES---EEVKKGVMEF 657
Query: 288 RHKFILPYLVK-TEITEKPMLAWLELL 313
++P L + + P W+E L
Sbjct: 658 YRAALVPELANFLDASMPPWKEWVENL 684
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 18/139 (12%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ + Y G Y GLQ + TIE + A+FKAG + E ++ Q +
Sbjct: 74 VVLRVGYVGTEYRGLQKQREL-------SADSTIESVLETAIFKAGGILESNYGKLQKVG 126
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEA---------INEHLPEQIRILSIKRVTK 109
++R++RTDKGV +L ++SLK+ P+ A + IN +LP+ +R+ S+ +
Sbjct: 127 WERSSRTDKGVHSLATMISLKMEIPDRAWENDPDGIALSNFINSNLPDNVRVFSVLPAQR 186
Query: 110 GFNSKNNCNARTYSYTCPT 128
F+ + C R Y Y P
Sbjct: 187 SFDVRRECLYREYLYLLPA 205
>gi|225718836|gb|ACO15264.1| tRNA pseudouridine synthase 3 [Caligus clemensi]
Length = 423
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 117/276 (42%), Gaps = 67/276 (24%)
Query: 33 TIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKL---------- 82
TIEG + AL + + + + + R RTDKGVSA +Q+VS++L
Sbjct: 85 TIEGHLFNALSRTCLI-----RSRETSNYHRCGRTDKGVSAFRQVVSIELRSNLLEGPGV 139
Query: 83 -----------PEEANKEAI------NEHLPEQIRILSIKRVT-KGFNSKNNCNARTYSY 124
P E I N +LP I++++ +T + F+++ +C R Y Y
Sbjct: 140 FDYPECRAHSRPNPTTNEEIDYCKILNSNLPPDIQVIAWAPLTNRDFSARFDCKIREYKY 199
Query: 125 TCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNF----------TSKRKPL 174
P A +D R+ L G+H+F NF T R+ L
Sbjct: 200 IFPLGA------ARDLSRIQEAGAKLL--------GSHDFRNFCKMDVSNGVLTYIRRML 245
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+ S S S D L+ LKI G +F+ HQIR +V V I +G LI+
Sbjct: 246 EVSVSPLESS-------STDSYSLVELKIVGNAFLWHQIRCIVTVLFHIGQGLEEPSLID 298
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDG 270
+ +++ P P GL E + +L++ YG++G
Sbjct: 299 ELLDVEKH--PRRPQYGLASE-IPLNLFDCSYGEEG 331
>gi|385802497|ref|YP_005838897.1| tRNA-pseudouridine synthase A [Haloquadratum walsbyi C23]
gi|339727989|emb|CCC39107.1| tRNA pseudouridine synthase TruA [Haloquadratum walsbyi C23]
Length = 272
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 108/266 (40%), Gaps = 49/266 (18%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G + G Q R + T+E + +AL D+ + P +
Sbjct: 3 AFRLAYDGRPFSGFQ----------RQPSVPTVEDSLFDALDSLDVFNRDTDSKPSG--Y 50
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSAL+Q V + P A+N LP +R + V GF++ ++ RT
Sbjct: 51 AAAGRTDAGVSALRQTVGFECPSWCTPRALNSELPTSVRAWASADVQSGFHATHDALQRT 110
Query: 122 YSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRY 181
Y+Y Y + D N L + G H+FHNFTS D + +
Sbjct: 111 YTY----YLYGPELD-----------MNRLNTAAEILSGKHDFHNFTSDD---DGTTRKL 152
Query: 182 IMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDL-IEKTFGL- 239
++ + + PF IT +I F IR++ M+ RG S+ + IE GL
Sbjct: 153 SITLEFDDPF-------ITARITADGFPRSLIRRL----MSALRGVGSESMTIETLTGLL 201
Query: 240 ------DQFDLPMAPGLGLLLEQVHY 259
+P A L+L +V Y
Sbjct: 202 NTVPQTGPDGIPTASPEPLILTRVTY 227
>gi|57085889|ref|XP_536533.1| PREDICTED: tRNA pseudouridine synthase 3 [Canis lupus familiaris]
Length = 480
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 117/288 (40%), Gaps = 66/288 (22%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + +AL K V + Q
Sbjct: 64 VALKIAYLGWGYQGFASQ---------ENTNNTIEEKLFDALTKTRLV-----ESRQTSN 109
Query: 61 FQRAARTDKGVSALKQIVSLKL----PEEANKE-------------------AINEHLPE 97
+ R RTDKGVSA Q++SL L PE + E +N LP
Sbjct: 110 YHRCGRTDKGVSAFGQVISLDLRSHFPEGSTSEDSNLKNEVNDVAKEIRYTHILNRVLPP 169
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IR+L+ V F+++ +C RTY Y P + D + + ++
Sbjct: 170 DIRVLAWAPVEPSFSARFSCLERTYRYFFP----------RADLDIIT-----MNYAAQK 214
Query: 158 YEGTHNFHNFTS----------KRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQS 207
Y GTH+F N +R L S D EQ ++ +L ++ GQ+
Sbjct: 215 YVGTHDFRNLCKMDVANGVINFQRTVLFAQVELVGQSLDKEQ--WQEPFQLCQFEVVGQA 272
Query: 208 FMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
F+ HQ+R M+ + I +G ++I++ +++ P P + +E
Sbjct: 273 FLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEKN--PQKPQYSMAVE 318
>gi|383620985|ref|ZP_09947391.1| tRNA pseudouridine synthase A [Halobiforma lacisalsi AJ5]
gi|448692514|ref|ZP_21696353.1| tRNA pseudouridine synthase A [Halobiforma lacisalsi AJ5]
gi|445787526|gb|EMA38267.1| tRNA pseudouridine synthase A [Halobiforma lacisalsi AJ5]
Length = 366
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 109/284 (38%), Gaps = 46/284 (16%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGF----VTEDSFNTPQ 57
A AY G Y G Q R + T+EG I AL G +DS +
Sbjct: 52 AYRIAYDGTDYHGFQ----------RQPSVPTVEGAIFAALRSLGVFDPDAADDSGPAVR 101
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNC 117
+ A RTDKGVSA+ Q ++ + P+ A+N LP +R ++ GF++ ++
Sbjct: 102 PAGYAAAGRTDKGVSAIAQTIAFEAPDWLTPRALNGELPADVRAWAVADAPDGFHATHHA 161
Query: 118 NARTYSYTCPTYAFATPQDTKDDF------RLTPD------------QFNFLQALLKQYE 159
R Y+Y YA DT R TP +QA +
Sbjct: 162 RRREYTYQL--YAPPLEDDTDGSTPGGGSERRTPPIPPVAPADAARVSDERIQAACRALS 219
Query: 160 GTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGV 219
G H++HN + P R S E +DG + + ++ F +R++V +
Sbjct: 220 GEHDYHNLAADDDP-----DRTERSLTVEA--TRDG-DYLVCTVEADGFARQLVRRLVSL 271
Query: 220 AMAIARGFTSKDLIEKTFGLDQFDLP----MAPGLGLLLEQVHY 259
I G + + +++ + P AP L+L V Y
Sbjct: 272 VREIGAGDSPLEKVDRVLADEPLPGPEGVGPAPPEPLVLTGVEY 315
>gi|108708044|gb|ABF95839.1| tRNA pseudouridine synthase family protein, expressed [Oryza sativa
Japonica Group]
Length = 374
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 77/147 (52%), Gaps = 10/147 (6%)
Query: 174 LDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLI 233
L+ S R I++F C + + G++ + L I G SFMLHQIRKMVG ++A+ RG KD+I
Sbjct: 193 LNASHFRDILTFSCGELQISSGIQFVELTISGVSFMLHQIRKMVGTSVAVKRGLLPKDII 252
Query: 234 EKTFG-LDQFDLPMAPGLGLLLEQVHYDLYNQ-----KYGQDGMHESLHFHEVDKEVNEF 287
+ + LP+AP L+L + L N+ + G M+ES EV K V EF
Sbjct: 253 ALSLAKFSRIVLPIAPSEVLVLRDNSFCLRNKQGTIVRPGIQSMNES---EEVKKGVMEF 309
Query: 288 RHKFILPYLVK-TEITEKPMLAWLELL 313
++P L + + P W+E L
Sbjct: 310 YRAALVPELANFLDASMPPWKEWVENL 336
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 91 INEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNF 150
IN +LP+ +R+ S+ + F+ + C R Y Y P + + + +
Sbjct: 26 INSNLPDNVRVFSVLPAQRSFDVRRECLYREYLYLLPAEIIGIKGGCSSEEVM--EHLSE 83
Query: 151 LQALLKQYEGTHNFHNFTSKRK 172
++LK +EG H FHN+T++ K
Sbjct: 84 FNSILKGFEGNHPFHNYTARAK 105
>gi|403262406|ref|XP_003923581.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Saimiri boliviensis
boliviensis]
Length = 477
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 118/287 (41%), Gaps = 67/287 (23%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K V + Q
Sbjct: 64 VALRIAYMGWGYQGFASQ---------ENTNNTIEEKLFEALTKTRLV-----ESRQTAN 109
Query: 61 FQRAARTDKGVSALKQIVSLKL---------------PEEANKEA-----INEHLPEQIR 100
+ R RTDKGVSA Q++SL L EEA +E +N LP IR
Sbjct: 110 YHRCGRTDKGVSAFGQVISLDLRSQFPRGRDSEDFNVKEEAAEEIRYTHILNRVLPPDIR 169
Query: 101 ILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEG 160
IL+ V F+++ +C RTY Y P + D + + ++Y G
Sbjct: 170 ILAWAPVEPSFSARFSCLERTYRYFFP----------RADLDIVT-----MDYAAQKYVG 214
Query: 161 THNFHNFTSKRKPLDPSCS-----RYIMSFDCEQPFVKDG-------LELITLKIKGQSF 208
TH+F N +D + R I+S + G +L ++ GQ+F
Sbjct: 215 THDFRNLCK----MDVANGVINFQRTILSAQVQLVGQSPGEERWQVPFQLCQFEVTGQAF 270
Query: 209 MLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
+ HQ+R M+ + I +G ++I++ +++ P P + +E
Sbjct: 271 LYHQVRCMMAILFLIGQGMEKPEIIDELLNIEKN--PQKPQYSMAVE 315
>gi|448319614|ref|ZP_21509110.1| tRNA pseudouridine synthase A [Natronococcus amylolyticus DSM
10524]
gi|445607607|gb|ELY61487.1| tRNA pseudouridine synthase A [Natronococcus amylolyticus DSM
10524]
Length = 285
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 112/270 (41%), Gaps = 42/270 (15%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G Y+G Q R + T+E + +AL G + D+ + +
Sbjct: 5 AFRIAYDGSDYYGFQ----------RQPDVPTVEDALFDALRAHGVLESDAR---KPAGY 51
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSAL Q V L+ P A N LP +R + GF++ ++ R
Sbjct: 52 AAAGRTDAGVSALAQTVGLEAPSWLTPRAFNGELPADVRAWAAADPADGFHATHHATRRE 111
Query: 122 YSYTCPTYAFATPQDTKD------DFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
Y+Y + +A P + + D R D F +A GTH+FHN T + +
Sbjct: 112 YTY----HLYAPPANRGEENEPARDGRAAVDDDRF-RAACDALSGTHDFHNLTPDDRNTE 166
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
S + M +DG + + + + F +R++V +A ++ G S +E+
Sbjct: 167 RSPTLEAM---------RDG-DYLVVTVSAGGFARELVRRLVSLAESVGTGERSFADLER 216
Query: 236 TFGLDQFDLP------MAPGLGLLLEQVHY 259
L+ LP AP L+L V Y
Sbjct: 217 A--LEPESLPGHEGIAPAPPEPLVLADVDY 244
>gi|422847509|ref|ZP_16894192.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK72]
gi|422877218|ref|ZP_16923688.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK1056]
gi|325686853|gb|EGD28878.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK72]
gi|332359857|gb|EGJ37671.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK1056]
Length = 249
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 114/252 (45%), Gaps = 31/252 (12%)
Query: 22 FLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLK 81
F F R ++++ +I + L + N Q + A RTD GV AL Q++
Sbjct: 15 FAGFQRQPHARSVQEEIEKTLTR--------INKGQPVVIHGAGRTDSGVHALGQVLHFD 66
Query: 82 LPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDT 137
LPE+ ++E A++ PE I +S+++V++ F+S+ N +++TY + P++
Sbjct: 67 LPEDRDEEKLRFALDTQTPEDIDFISVEQVSEDFHSRYNKHSKTYEFLV---DIGRPKNP 123
Query: 138 KDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLDP---SCSRYIMSFDCEQP 190
T P + ++ + Q EGTH+F FT+ ++ + + + +D E+
Sbjct: 124 MMRHYATHYPYPLELGLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRYDAERN 183
Query: 191 FVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDL--PMAP 248
F + G F+ QIR MVG + I + I++ L P A
Sbjct: 184 F-------LVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILAEKDRHLAGPTAG 236
Query: 249 GLGLLLEQVHYD 260
GL L+++ Y+
Sbjct: 237 PNGLYLKEIRYE 248
>gi|410972303|ref|XP_003992599.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Felis catus]
Length = 480
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 132/320 (41%), Gaps = 74/320 (23%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K V + Q
Sbjct: 64 VALKIAYLGWGYQGFASQ---------ENTNNTIEEKLFEALTKTRLV-----ESRQTSN 109
Query: 61 FQRAARTDKGVSALKQIVSLKL----PEEANKE-------------------AINEHLPE 97
+ R RTDKGVSA Q++SL L P++ E +N LP
Sbjct: 110 YHRCGRTDKGVSAFGQVISLDLRSHFPKDRASEDCNLKDEVSDAAKEIRYTHILNRVLPP 169
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IR+L+ V F+++ +C RTY Y P + D + + ++
Sbjct: 170 DIRVLAWAPVEPSFSARFSCLERTYRYFFP----------RADLDIVA-----MNDAAQK 214
Query: 158 YEGTHNFHNFTS----------KRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQS 207
Y GTH+F N +R L S D E+ ++ +L ++ GQ+
Sbjct: 215 YVGTHDFRNLCKMDVANGVINFQRTILSAQVQLVGQSLDKER--WQEPFQLCQFEVIGQA 272
Query: 208 FMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYG 267
F+ HQ+R M+ + I +G ++I++ +++ P P + +E LY+ K+
Sbjct: 273 FLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEKN--PQKPQYSMAVE-FPLVLYDCKF- 328
Query: 268 QDGMHESLHFHEVDKEVNEF 287
E++ + D+EV EF
Sbjct: 329 -----ENIKWI-YDREVQEF 342
>gi|443732826|gb|ELU17390.1| hypothetical protein CAPTEDRAFT_127384, partial [Capitella teleta]
Length = 372
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 105/236 (44%), Gaps = 46/236 (19%)
Query: 32 KTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSL----------- 80
KTIE + +A K + +S +T + +QR RTDKGVSA Q++SL
Sbjct: 28 KTIEAAVFDAFVKTKLI--ESRDTSK---YQRCGRTDKGVSAFTQVISLEVRTNLLEGPG 82
Query: 81 -KLPEEANKEA--------INEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAF 131
++PE+ +N LP +IR+++ V + F+++ +C +RTY Y P
Sbjct: 83 VRVPEDNASRGKEMPFSKMLNGCLPPEIRVIAWCPVDEDFSARFSCQSRTYKYFFPRAQL 142
Query: 132 ATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSK--RKPLDPSCSR----YIMSF 185
+ ++A + G H+F NF R + R +I F
Sbjct: 143 ---------------NLDVMRAAAAKLIGLHDFRNFCKMDVRNGVIEYMRRISEIHIEPF 187
Query: 186 DCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQ 241
+ E DG + + + G+SF+ HQ+R + + + I G + +LI+ +++
Sbjct: 188 NSEYAAEDDGYSMCVMTVHGKSFLWHQVRCIAAILLIIGEGKETPELIDDLLNVEK 243
>gi|289581033|ref|YP_003479499.1| pseudouridine synthase I TruA [Natrialba magadii ATCC 43099]
gi|289530586|gb|ADD04937.1| Pseudouridine synthase I, TruA, alpha/beta domain protein
[Natrialba magadii ATCC 43099]
Length = 293
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 112/283 (39%), Gaps = 60/283 (21%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G GY+G Q R + T+E + +AL + D+ + P +
Sbjct: 3 AFRLAYDGTGYYGFQ----------RQPDVPTVEDAMFDALRALDVLAPDA-DKPAG--Y 49
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSAL Q V+ + P+ A N LP IR + F++ ++ R
Sbjct: 50 AAAGRTDAGVSALAQTVAFEAPDWLTPRAFNGELPADIRAWAAADAPDEFHATHHARERE 109
Query: 122 YSYTCPTYAFATP--------QDTKDDFRLTP--------DQFNFLQALLKQYEGTHNFH 165
Y+Y Y +A P DT +D TP D+F QA G H+FH
Sbjct: 110 YTY----YLYAPPANDDAPPASDTDEDHAGTPVTAHTVDDDRF---QAACDALSGPHDFH 162
Query: 166 NFT-----SKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVA 220
N T ++R P+ S +DG I L + F +R++V +A
Sbjct: 163 NLTPDDHNTERSPVLES--------------TRDGHFRI-LTVTAGGFCRELVRRLVSLA 207
Query: 221 MAIARGFTSKDLIEKTFGLDQF----DLPMAPGLGLLLEQVHY 259
+ G + IE+ D + AP L+L V Y
Sbjct: 208 RDVGTGEANLQTIERALESDPLPGHEGIAPAPPEPLVLTDVEY 250
>gi|403356760|gb|EJY77983.1| tRNA pseudouridine synthase putative [Oxytricha trifallax]
Length = 497
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 89/205 (43%), Gaps = 20/205 (9%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDC------------- 187
+RL+ + + AL K + G +HN+T + R++M +
Sbjct: 291 YRLSKEDHERVIALFKLFLGVKKYHNYTKLIRAHMMKAQRFMMILEASDFMYVNYETNEV 350
Query: 188 ---EQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDL 244
E P +E + +KGQSF+ +QIRKM+GV + + RG I T + ++
Sbjct: 351 TNKEDP---KAIEFLHFALKGQSFLYNQIRKMIGVIIQVFRGDLDDKFIPNTLRDNIVNV 407
Query: 245 PMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEK 304
+APG GLLLE+V YD YN + + E+ +FR + ++ E +K
Sbjct: 408 ALAPGDGLLLEKVCYDKYNTNKKDVKNEIMIKYVATTNEIKQFRENLV-RHIATRETVDK 466
Query: 305 PMLAWLELLADHSFETRAAKAALAA 329
WL D+S + + AA
Sbjct: 467 AFTKWLSQFDDYSEDYYVERPPQAA 491
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 75/140 (53%), Gaps = 17/140 (12%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+AM+ Y+G + G Q +N ++++E +I +AL++ G ++E ++ + I
Sbjct: 64 VAMIVGYNGSNFCGSQ----------KNPNIRSVEEEIEKALYRLGRISEYNYGDLKKIG 113
Query: 61 FQRAARTDKGVSALKQIVSLKL-------PEEANKEAINEHLPEQIRILSIKRVTKGFNS 113
+ RA RTDK V A++ S K+ +E + +N+ LPE I I +I R + FNS
Sbjct: 114 WNRATRTDKRVHAIQNCFSFKIHISKDENEDEDFRVVLNKELPEDITIFAIIRSSNRFNS 173
Query: 114 KNNCNARTYSYTCPTYAFAT 133
K N + R YSY PT+ +
Sbjct: 174 KLNADDREYSYYLPTFMLKS 193
>gi|156844606|ref|XP_001645365.1| hypothetical protein Kpol_1058p44 [Vanderwaltozyma polyspora DSM
70294]
gi|156116026|gb|EDO17507.1| hypothetical protein Kpol_1058p44 [Vanderwaltozyma polyspora DSM
70294]
Length = 446
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 116/275 (42%), Gaps = 70/275 (25%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ FAY G Y GL I + T+EG I+EA+ K V S N PQ+ +
Sbjct: 97 IALKFAYLGWNYNGLA-------IQKEPTPLPTVEGVILEAMNKCRLVP--SMN-PQDYK 146
Query: 61 FQRAARTDKGVSALKQIVSLKL-----PEE-ANK----------EAINEHLPEQIRILSI 104
F R RTDKGVSA+ Q++SLK+ PEE AN + +N+ LP+ IR+ ++
Sbjct: 147 FSRCGRTDKGVSAMSQVISLKVRSNLTPEEQANSDNDSKEIQYVDILNQLLPDDIRVSAV 206
Query: 105 K-RVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHN 163
R K F+++ +C R Y Y F ++ K YEG ++
Sbjct: 207 CLRPPKDFDARFSCKHRHYKYL---------------FNKEGLDLEKMEQAAKYYEGEND 251
Query: 164 FHNFTS----------KRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQI 213
F NF KR + S F C +LI G +F+ HQ+
Sbjct: 252 FRNFCKLDGSKQITNYKRTIISASIMHVSGDFYC--------FDLI-----GSAFLWHQV 298
Query: 214 RKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAP 248
R M+ + +G LI+ D D+ P
Sbjct: 299 RCMMANLFLVGQGLEDHTLIK-----DMLDIEKTP 328
>gi|428184071|gb|EKX52927.1| hypothetical protein GUITHDRAFT_161113 [Guillardia theta CCMP2712]
Length = 419
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 110/241 (45%), Gaps = 50/241 (20%)
Query: 32 KTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLPEEANKEAI 91
+TIEG + AL K + + ++ + R ARTDKGVSAL Q+VSL+ E + I
Sbjct: 103 ETIEGHLFAALSKTCLIPSRASSS-----YSRCARTDKGVSALGQVVSLR--ELPYLQMI 155
Query: 92 NEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPD-QFNF 150
N LP IR ++ C+ R+Y Y F + D
Sbjct: 156 NALLPPTIRAIAW----------FACSMRSYKY----------------FFVRADMNIEG 189
Query: 151 LQALLKQYEGTHNFHNFTS--KRKPLDPSCSRYIMSFDCEQPFVKDGLE----LITLKIK 204
++A K EG+H+F NF KP + + +R+I+SFD P V+ E + ++ IK
Sbjct: 190 MRAAAKLLEGSHDFRNFCKIDSSKP-NLTFTRHIISFDI-IPVVEQETESRYSVWSMDIK 247
Query: 205 GQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLG------LLLEQVH 258
+F+ HQ+R M + A+ RG ++ + ++ LD P P LLL H
Sbjct: 248 ATAFLWHQVRAMAAILFAVGRGELEENFV--SYMLDISRCPQKPHYNIASEEPLLLYHCH 305
Query: 259 Y 259
+
Sbjct: 306 F 306
>gi|330837397|ref|YP_004412038.1| tRNA pseudouridine synthase A [Sphaerochaeta coccoides DSM 17374]
gi|329749300|gb|AEC02656.1| tRNA pseudouridine synthase A [Sphaerochaeta coccoides DSM 17374]
Length = 299
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 123/294 (41%), Gaps = 39/294 (13%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
M AY G GY G Q + RN +++ +I +AL++ T ++
Sbjct: 24 MTVAYDGTGYSGWQHQ--------RNA--PSVQAEIEDALYRL---------TGHSVTVV 64
Query: 63 RAARTDKGVSALKQIVSLKLPEE-----ANKEAINEHLPEQIRILSIKRVTKGFNSKNNC 117
+ RTD GV AL Q+ LP+E K A+N LP IRI+ + F+++ +
Sbjct: 65 GSGRTDSGVHALGQVCHFDLPDERFPAVVFKRALNAFLPPAIRIMDSEETNDSFHARFSA 124
Query: 118 NARTYSYTCPTYAFATPQDTKDDFRLTP-DQFNFLQALLKQYEGTHNFHNFTSKRKPLDP 176
AR Y Y A TP D+ + + L+A + GTH+F FT+
Sbjct: 125 MAREYRYLIKREADMTPFDSGRVWVVKELPSLELLKAHAAEIAGTHDFTTFTAA----GD 180
Query: 177 SCSR-----YIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVA-MAIARGFTSK 230
C R Y+ F E+ G E++ I G +F+ +R +VG + G +
Sbjct: 181 MCERRHRDIYVSDFSVEKDI--HGAEVLVYTICGNAFLYKMVRSIVGTLFFLVLGGVPAT 238
Query: 231 DLIEKTFGLDQFDLP-MAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKE 283
+ + D+ A GL L ++ +D ++ + +H S+ D+E
Sbjct: 239 ETARRLAARDRSQAGRTASAHGLYLSRISFDEKEYEWFEH-LHPSMEMPSEDRE 291
>gi|403212791|emb|CAJ51238.2| tRNA pseudouridine synthase TruA [Haloquadratum walsbyi DSM 16790]
Length = 272
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 108/266 (40%), Gaps = 49/266 (18%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G + G Q R + T+E + +AL D+ + P +
Sbjct: 3 AFRLAYDGRPFSGFQ----------RQPSVPTVEDALFDALDSLDVFNRDTDSKPSG--Y 50
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSAL+Q V + P A+N LP +R + V GF++ ++ RT
Sbjct: 51 AAAGRTDAGVSALRQTVGFECPSWCTPRALNSELPTSVRAWASADVQSGFHATHDALQRT 110
Query: 122 YSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRY 181
Y+Y Y + D N L + G H+FHNFTS D + +
Sbjct: 111 YTY----YLYGPELD-----------MNRLNTAAEILSGKHDFHNFTSDD---DGTTRKL 152
Query: 182 IMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDL-IEKTFGL- 239
++ + + PF IT +I F IR++ M+ RG S+ + IE GL
Sbjct: 153 SITLEFDDPF-------ITARITADGFPRSLIRRL----MSALRGVGSESMTIETLTGLL 201
Query: 240 ------DQFDLPMAPGLGLLLEQVHY 259
+P A L+L +V Y
Sbjct: 202 NTVPQTGPDGIPTASPEPLILTRVTY 227
>gi|124486487|ref|YP_001031103.1| tRNA pseudouridine synthase ACD [Methanocorpusculum labreanum Z]
gi|166228737|sp|A2SU30.1|TRUA_METLZ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|124364028|gb|ABN07836.1| tRNA pseudouridine synthase A [Methanocorpusculum labreanum Z]
Length = 281
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 98/231 (42%), Gaps = 28/231 (12%)
Query: 32 KTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLPE-EANKEA 90
+T+EG+ F AG + F+ + F+ A RTDKGVSA +Q+ S+ + E EA
Sbjct: 24 RTVEGE-----FVAGGIELGLFSDAKEAHFRTAGRTDKGVSARRQLFSITTEKPELAIEA 78
Query: 91 INEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNF 150
+N HLP+ I + V + F + R+Y Y P P +
Sbjct: 79 LNFHLPDDIWCIGAAEVDEEFYPRYAARERSYRYYFP----------------YPADVSR 122
Query: 151 LQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFML 210
+Q + GTHNF F DP R + + + KDG + ++ +SF+
Sbjct: 123 MQDAASRLIGTHNFSGFAKMEAGRDP--VRTVTRAEVFEG--KDGCPV--FEVAAKSFLW 176
Query: 211 HQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDL 261
+ +R M G I G D+IE+ + AP GL+ V DL
Sbjct: 177 NMVRGMAGALQTIGLGLCEPDVIEELLSSPTARVHPAPAEGLVFWDVVCDL 227
>gi|401423720|ref|XP_003876346.1| pseudouridylate synthase-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492588|emb|CBZ27865.1| pseudouridylate synthase-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 696
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 75/148 (50%), Gaps = 18/148 (12%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTP--QN 58
+ + YSG G+ GLQ I T+EG +++AL AG + + P ++
Sbjct: 27 IGLCVLYSGSGFRGLQ-------IQAHAPTCHTVEGVLIQALKDAGIIADVVRGRPAGEH 79
Query: 59 IQFQRAARTDKGVSALKQIVSLKLPEEANKEA---------INEHLPEQIRILSIKRVTK 109
F R+ RTD+GV A++ +VSL +P+E +E +N LP +R+ ++ +++
Sbjct: 80 HHFARSCRTDRGVHAIRNMVSLFVPKEIFEEVGQTEGICEKLNRQLPATVRVANVMQLSG 139
Query: 110 GFNSKNNCNARTYSYTCPTYAFATPQDT 137
F ++ CN R Y Y P YA P DT
Sbjct: 140 SFIPRHCCNRRVYRYMLPLYALLPPCDT 167
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 195 GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMAPGLGLL 253
L + +I+G SF+L+ IRK++G +A+ RG + ++E+ F + + P+APG L
Sbjct: 362 ALPFLFFQIEGCSFLLNMIRKIIGSVLAVCRG-AREPILEEAFSPERRVTTPLAPGPYLY 420
Query: 254 LEQVHYDLYNQKYGQDG 270
L Q Y Y++ G G
Sbjct: 421 LAQSTYHGYDRSIGGAG 437
>gi|157870999|ref|XP_001684049.1| pseudouridylate synthase-like protein [Leishmania major strain
Friedlin]
gi|68127117|emb|CAJ04679.1| pseudouridylate synthase-like protein [Leishmania major strain
Friedlin]
Length = 696
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 75/148 (50%), Gaps = 18/148 (12%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTP--QN 58
+ + YSG G+ GLQ I T+EG +++AL AG + + P ++
Sbjct: 27 IGLCVLYSGSGFRGLQ-------IQVHAPTCHTVEGVLIQALKDAGIIADVVRGRPAGEH 79
Query: 59 IQFQRAARTDKGVSALKQIVSLKLPEEANK---------EAINEHLPEQIRILSIKRVTK 109
F R+ RTD+GV A++ +VSL +P+E + E +N LP +R+ ++ +++
Sbjct: 80 HHFARSCRTDRGVHAIRNMVSLFVPKEVFEKMGQAEGICEKLNRQLPATVRVANVMQLSG 139
Query: 110 GFNSKNNCNARTYSYTCPTYAFATPQDT 137
F ++ CN R Y Y P YA P DT
Sbjct: 140 SFIPRHCCNRRVYRYMLPLYALLPPCDT 167
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 195 GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMAPGLGLL 253
L + +I+G SF+L+ IRK++G +A+ RG + ++E F + + P+APG L
Sbjct: 362 ALPFLFFQIEGCSFLLNMIRKIIGSVLAVCRG-ARESILEDAFSPECRVTTPLAPGPYLY 420
Query: 254 LEQVHYDLYNQKYGQDG 270
L Q Y Y++ G G
Sbjct: 421 LAQSTYHGYDRSIGGAG 437
>gi|134056983|emb|CAK44330.1| unnamed protein product [Aspergillus niger]
Length = 517
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 116/250 (46%), Gaps = 27/250 (10%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ FAY G Y GL+ + TIE ++ +AL K T+ + +
Sbjct: 109 IALKFAYLGQRYNGLEHAN------GNATPLPTIEEEMYKALRKT-RETKPYYINWDGCE 161
Query: 61 FQRAARTDKGVSALKQIVSLKLPEE-ANKEAINEHLPEQIRILS-IKRVTKGFNSKNNCN 118
+ +A RTD+GVSA Q++ +++ E +N+ LPE IR+L+ R +GF+++ +C
Sbjct: 162 YSKAGRTDRGVSAFGQVIGIRVRNELPYVSMLNKVLPEDIRVLAWCPRPPEGFDARFSCG 221
Query: 119 ARTYSYTCPTYAFA--------TPQD-TKDDFRLTPDQFNF--LQALLKQYEGTHNFHNF 167
R Y Y AF+ P+D T +L + ++ K +EGTH+F NF
Sbjct: 222 ERHYKYFFTQPAFSPTPGASGFVPRDGTGKPPKLREGWLDIEAMRKAAKYFEGTHDFRNF 281
Query: 168 TSKRKPLDPSC---SRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIA 224
LD + S Y F + ++ ++G +F+ HQ+R MV V +
Sbjct: 282 CK----LDVTKQIESFYRDIFQSSAAPLPTAAQVYVFHLEGSAFLWHQVRHMVNVLFLVG 337
Query: 225 RGFTSKDLIE 234
+G +++
Sbjct: 338 QGLEEPSIVQ 347
>gi|300088167|ref|YP_003758689.1| tRNA pseudouridine synthase A [Dehalogenimonas lykanthroporepellens
BL-DC-9]
gi|299527900|gb|ADJ26368.1| tRNA pseudouridine synthase A [Dehalogenimonas lykanthroporepellens
BL-DC-9]
Length = 261
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 101/214 (47%), Gaps = 16/214 (7%)
Query: 55 TPQNIQFQRAARTDKGVSALKQIVS----LKLPEEANKEAINEHLPEQIRILSIKRVTKG 110
T + I+ A+RTD GVSA +Q+ S L+LP +A+N LP I + + RV
Sbjct: 44 TGEKIRIHLASRTDAGVSAAEQVASFRTSLRLPGRTVADALNHFLPADIAVKKVFRVPDT 103
Query: 111 FNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPD-QFNFLQALLKQYEGTHNFHNFTS 169
F+ + + +R Y Y +P + +R+ + ++ + + G H+ F S
Sbjct: 104 FDVRRHAVSREYRYRILNTRIPSPLRERHSYRVYGELDIAAIEQAVGKLVGEHDLAAFAS 163
Query: 170 K--RKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGF 227
K R+P + R I++ +G EL+ +I +SF+ H +R +VGV + I G
Sbjct: 164 KLGRRP--GTTIRRILAAG----LTSEGEELV-FRIVAKSFLPHMVRNIVGVLVKIGTGR 216
Query: 228 TSKDLIEKTF--GLDQFDLPMAPGLGLLLEQVHY 259
+ EK + P APG GL L +V+Y
Sbjct: 217 LTVAEFEKLLSAAVPGSAGPAAPGKGLCLIKVNY 250
>gi|431904392|gb|ELK09777.1| tRNA pseudouridine synthase 3 [Pteropus alecto]
Length = 481
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/324 (25%), Positives = 135/324 (41%), Gaps = 82/324 (25%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K + + Q
Sbjct: 64 VALKIAYLGWGYQGFASQ---------ENTNNTIEEKLFEALTKTRLI-----ESRQTSN 109
Query: 61 FQRAARTDKGVSALKQIVSL---------------KLPEEANKEA--------INEHLPE 97
+ R RTDKGVSA Q++SL L +E N A +N LP
Sbjct: 110 YHRCGRTDKGVSAFGQVISLDLRSHFPKGRDSEDFNLTDEVNDAAKEIRYTHILNRVLPP 169
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IR+L+ V F+++ +C RTY Y P + D + + ++
Sbjct: 170 DIRVLAWASVEPSFSARFSCLERTYRYFFP----------RADLDIVT-----MNCAAQK 214
Query: 158 YEGTHNFHNFTSKRKPLDPSCS-----RYIMSFDCEQPFVKDGL---------ELITLKI 203
Y GTH+F N +D + R I+S + V GL ++ ++
Sbjct: 215 YVGTHDFRNLCK----MDVANGVINFHRTILSAQVQ--LVGQGLAEERWQEPFQICQFEV 268
Query: 204 KGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYN 263
GQ+F+ HQ+R M+ + I +G ++I++ +++ P P + +E LY+
Sbjct: 269 TGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNVEKN--PQKPQYSMAVE-FPLVLYD 325
Query: 264 QKYGQDGMHESLHFHEVDKEVNEF 287
K+ E++ + D+EV+EF
Sbjct: 326 CKF------ENIKWI-YDREVHEF 342
>gi|367011433|ref|XP_003680217.1| hypothetical protein TDEL_0C01170 [Torulaspora delbrueckii]
gi|359747876|emb|CCE91006.1| hypothetical protein TDEL_0C01170 [Torulaspora delbrueckii]
Length = 437
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 116/260 (44%), Gaps = 49/260 (18%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ FAY G Y GL + + T+EG I+EAL K V P + +
Sbjct: 86 IALKFAYLGWNYNGLAVQK-------EPTPLPTVEGVIIEALNKCKLVPSLD---PHDFR 135
Query: 61 FQRAARTDKGVSALKQIVSLKL-----------PEEANKE-----AINEHLPEQIRILSI 104
F R RTDKGVSA+ Q++SL + P+ +KE +N+ LPE IR+ ++
Sbjct: 136 FSRCGRTDKGVSAMSQVISLFVRSNLSEEEQSDPKNDSKEIQYVNILNQLLPEDIRVSAV 195
Query: 105 K-RVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHN 163
R KGF+++ +C R Y Y +D D R+ DQ L ++G H+
Sbjct: 196 SLRPPKGFDARFSCQYRHYRYL-------FHKDGLDVGRM--DQAAAL------FKGEHD 240
Query: 164 FHNFTSKRKPLDPS--CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAM 221
F NF LD S + Y + + G + + G +F+ HQ+R M+
Sbjct: 241 FRNFCK----LDGSKQITNYARNIISAKIIPLSG-DFYCFDLIGSAFLWHQVRCMMANLF 295
Query: 222 AIARGFTSKDLIEKTFGLDQ 241
+ +G + LI +D+
Sbjct: 296 LVGQGLENVSLISDMLDVDK 315
>gi|444317471|ref|XP_004179393.1| hypothetical protein TBLA_0C00580 [Tetrapisispora blattae CBS 6284]
gi|387512434|emb|CCH59874.1| hypothetical protein TBLA_0C00580 [Tetrapisispora blattae CBS 6284]
Length = 435
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 109/257 (42%), Gaps = 59/257 (22%)
Query: 1 MAMMFAYSGVGYFGL--QSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQN 58
+A+ FAY G Y GL Q Y + T+EG I+EA+ K V S PQ+
Sbjct: 86 IALKFAYLGWNYNGLAIQKDY---------TPLPTVEGTILEAMNKCKLVPSMS---PQD 133
Query: 59 IQFQRAARTDKGVSALKQIVSLKLPEEANKE----------------AINEHLPEQIRIL 102
F R RTDKGVSA+ Q++SL + + E +N+ LP IRI
Sbjct: 134 YNFSRCGRTDKGVSAMSQVISLNVRSNLSNEEQLNPLKDSDEIHYVDILNQVLPADIRIS 193
Query: 103 SIK-RVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGT 161
++ R GFN++ +C Y + + D + ++ K Y+G
Sbjct: 194 AVCLRPPSGFNARFSC----YKSSLQVFIRKKNLDIEK-----------MKIAAKLYQGE 238
Query: 162 HNFHNFTSKRKPLDPS-----CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKM 216
H+F NF LD S +R I+S D P D + G +F+ HQ+R M
Sbjct: 239 HDFRNFCK----LDGSKQITNYNRTIISADI-LPINGD---FYCFDLVGSAFLWHQVRCM 290
Query: 217 VGVAMAIARGFTSKDLI 233
+ + I +G LI
Sbjct: 291 MAILFLIGQGLEEPSLI 307
>gi|110667083|ref|YP_656894.1| tRNA pseudouridine synthase A [Haloquadratum walsbyi DSM 16790]
Length = 276
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 108/266 (40%), Gaps = 49/266 (18%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G + G Q R + T+E + +AL D+ + P +
Sbjct: 7 AFRLAYDGRPFSGFQ----------RQPSVPTVEDALFDALDSLDVFNRDTDSKPSG--Y 54
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSAL+Q V + P A+N LP +R + V GF++ ++ RT
Sbjct: 55 AAAGRTDAGVSALRQTVGFECPSWCTPRALNSELPTSVRAWASADVQSGFHATHDALQRT 114
Query: 122 YSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRY 181
Y+Y Y + D N L + G H+FHNFTS D + +
Sbjct: 115 YTY----YLYGPELD-----------MNRLNTAAEILSGKHDFHNFTSDD---DGTTRKL 156
Query: 182 IMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDL-IEKTFGL- 239
++ + + PF IT +I F IR++ M+ RG S+ + IE GL
Sbjct: 157 SITLEFDDPF-------ITARITADGFPRSLIRRL----MSALRGVGSESMTIETLTGLL 205
Query: 240 ------DQFDLPMAPGLGLLLEQVHY 259
+P A L+L +V Y
Sbjct: 206 NTVPQTGPDGIPTASPEPLILTRVTY 231
>gi|389601586|ref|XP_001562276.2| pseudouridylate synthase-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505105|emb|CAM39306.2| pseudouridylate synthase-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 689
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 18/148 (12%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTP--QN 58
+ + YSG G+ GLQ I T+EG +++AL G + + P ++
Sbjct: 27 IGLCLLYSGSGFRGLQ-------IQVHAPTCHTVEGMLIQALKDTGIIADVVRGRPAGEH 79
Query: 59 IQFQRAARTDKGVSALKQIVSLKLPEEANK---------EAINEHLPEQIRILSIKRVTK 109
F R+ RTD+GV A++ +VSL +P+E E +N LP +R+ S+ +++
Sbjct: 80 HHFARSCRTDRGVHAIRNMVSLFVPKEVFDKVGQSGGICERLNRRLPATVRVASVMQLSG 139
Query: 110 GFNSKNNCNARTYSYTCPTYAFATPQDT 137
F ++ CN R Y Y P YA P DT
Sbjct: 140 SFIPRHCCNRRVYRYMLPLYALLPPCDT 167
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
L + +I+G+SF+L+ IRK++G +A+ RG L E + P+APG L L
Sbjct: 363 LPFLIFQIEGESFLLNMIRKVIGSLLAVCRGARESILEEALSPERRVTTPLAPGPYLYLA 422
Query: 256 QVHYDLYNQKYG 267
Q Y Y++ G
Sbjct: 423 QSTYHGYDRSIG 434
>gi|298674065|ref|YP_003725815.1| tRNA pseudouridine synthase A [Methanohalobium evestigatum Z-7303]
gi|298287053|gb|ADI73019.1| tRNA pseudouridine synthase A [Methanohalobium evestigatum Z-7303]
Length = 277
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 124/298 (41%), Gaps = 49/298 (16%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
MA+ AY G Y G Q + + TIEG++ ++L + + P++
Sbjct: 5 MALKLAYIGTEYHGSQVQ----------PELPTIEGELFKSLKNLEII-----DDPKSAN 49
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F + RTD GV +L Q+V+ P A IN LPE I + V FN ++
Sbjct: 50 FVSSGRTDTGVHSLGQVVTFDTDNPRLAVPRVINSQLPESIWAWAYAVVPDEFNPRHGAF 109
Query: 119 ARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSC 178
+R Y Y + + ++ K GTH+F NF + K S
Sbjct: 110 SRRYLYIMSGEEY---------------DISRIRTASKYLIGTHDFANFCTPVK--GKST 152
Query: 179 SRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFG 238
R + + VK L LI I+ SF+ +RK+V M + G + +E+
Sbjct: 153 VRTVQRINIR---VKGTLTLI--DIQADSFLWKMVRKIVTALMMVGYGTRDTEWLEQMLN 207
Query: 239 LDQFD--LPMAPGLGLLLEQVHY--------DLYNQKYGQDGMHESLHFHEVDKEVNE 286
+ ++ + AP GL+L+ V Y D Y+ + ++ +H+ L + V EV E
Sbjct: 208 PEYYEEGIEPAPSYGLILKDVDYLQPIEWEVDDYSIQKARNQLHQHLIRYRVMAEVLE 265
>gi|334330487|ref|XP_001371991.2| PREDICTED: tRNA pseudouridine synthase 3-like [Monodelphis
domestica]
Length = 576
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 83/338 (24%), Positives = 135/338 (39%), Gaps = 76/338 (22%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K V + Q
Sbjct: 69 VALKIAYLGWGYQGFASQ---------ENTNNTIEEKLFEALTKTRLV-----ESRQTSN 114
Query: 61 FQRAARTDKGVSALKQIVSLKL---------PEEAN-KEAINEH-------------LPE 97
+ R RTDKGVSA Q++SL L PE+ N K+ +N+ LP
Sbjct: 115 YHRCGRTDKGVSAFGQVISLNLRSQLPRDKDPEDKNLKDTVNDSVEEICYTHILNRVLPP 174
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IR+L+ V F+++ +C RTY Y P + ++
Sbjct: 175 DIRVLAWATVESSFSARFSCLERTYRYFFPCANL---------------DIEAMNDAAQK 219
Query: 158 YEGTHNFHNFTS----------KRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQS 207
Y GTH+F N +R L E+ ++ +L ++ GQ+
Sbjct: 220 YVGTHDFRNLCKMDVANGVINFQRTILSAKVQLVAFGSPEEKLQQQESFQLCQFEVIGQA 279
Query: 208 FMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYG 267
F+ HQ+R M+ + I + ++I++ +++ P P + +E LY+ K+
Sbjct: 280 FLYHQVRCMMAILFLIGQRMEKAEIIDELLNIEKN--PQKPQYSMAVE-FPLVLYDCKF- 335
Query: 268 QDGMHESLHFHEVDKEVNEFR----HKFILPYLVKTEI 301
E++ + D+EV EF + Y VKT +
Sbjct: 336 -----ENIKWI-YDREVQEFNVTHLQQLWASYAVKTHM 367
>gi|47208381|emb|CAF93145.1| unnamed protein product [Tetraodon nigroviridis]
Length = 409
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/307 (22%), Positives = 123/307 (40%), Gaps = 71/307 (23%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G Y G + T+E + EAL K + + Q+
Sbjct: 75 VALRLAYLGWAYQGFA---------VQENTDNTVEARLFEALHKTCLIQDR-----QSSN 120
Query: 61 FQRAARTDKGVSALKQIV----------SLKLPE--EANKEA------------INEHLP 96
+ R RTDKGVSA Q+ S KLPE +A+K++ +N LP
Sbjct: 121 YHRCGRTDKGVSAFSQVTAVQSLHTPPFSFKLPENVDADKKSQTAVSELPYVKMLNRVLP 180
Query: 97 EQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLK 156
IRI + +GF+++ +C +RTY Y P + + +
Sbjct: 181 HDIRIWNWAPAAEGFSARFDCQSRTYRYYFPRGSL---------------NVELMADAAE 225
Query: 157 QYEGTHNFHNFTS----------KRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQ 206
+YEGTH+F N +R L S + + E D ++ +++G
Sbjct: 226 RYEGTHDFRNLCKMDVGNGVLQFERTILSSS----VTPVNPEHASSTDQYDIFVFEVRGL 281
Query: 207 SFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD----QFDLPMAPGLGLLLEQVHYDLY 262
+F+ HQ+R M+ + + I + + ++I + + + MA L+L H++
Sbjct: 282 AFLYHQVRCMMALLLLIGQKLEAPEIINQLLDVQSNPRKPQYSMAVDYPLVLYHCHFEGL 341
Query: 263 NQKYGQD 269
+ + D
Sbjct: 342 DWQQSND 348
>gi|448599368|ref|ZP_21655272.1| tRNA pseudouridine synthase A [Haloferax alexandrinus JCM 10717]
gi|445736829|gb|ELZ88369.1| tRNA pseudouridine synthase A [Haloferax alexandrinus JCM 10717]
Length = 275
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 102/264 (38%), Gaps = 45/264 (17%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G Y G Q R + T+E I +A G +D T +
Sbjct: 3 AFRVAYDGRPYHGFQ----------RQPDVPTVEDAIFDACRALGVCDDDEEPT----DY 48
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSAL Q V+ P+ A+N LP +R + F++++ R
Sbjct: 49 AAAGRTDAGVSALAQTVAFDCPDWCTPRALNSELPGTVRAWAAADAPDDFHARHRPTRRE 108
Query: 122 YSYT--CPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCS 179
Y Y PT F DD R +A G H+FHN T P D
Sbjct: 109 YVYDLHAPTEGF-------DDDR--------AKAAFDACRGDHDFHNLT----PDDHGTV 149
Query: 180 RYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGL 239
R I + +DG + + ++++ F +R++V + A+ G ++ G
Sbjct: 150 RSI-----DGGLTRDG-DFLLVRVEAGGFARELVRRLVSLVRAVGSGAAPLSKVDDALGP 203
Query: 240 DQFDLP----MAPGLGLLLEQVHY 259
D D P AP LLL V Y
Sbjct: 204 DHLDGPEGIAPAPPTPLLLTAVDY 227
>gi|422853504|ref|ZP_16900168.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK160]
gi|325697516|gb|EGD39402.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK160]
Length = 249
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 112/252 (44%), Gaps = 31/252 (12%)
Query: 22 FLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLK 81
F F R ++++ +I + L + N Q + A RTD GV AL Q++
Sbjct: 15 FAGFQRQPHARSVQEEIEKTLTR--------INKGQPVVIHGAGRTDSGVHALGQVLHFD 66
Query: 82 LPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDT 137
LPEE ++E A++ PE I +S+++V+ F+S+ N +++TY + P++
Sbjct: 67 LPEERDEEKLRFALDTQTPEDIDFISVEQVSNDFHSRYNKHSKTYEFLV---DIGRPKNP 123
Query: 138 KDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLDP---SCSRYIMSFDCEQP 190
T P + ++ + EGTH+F FT+ ++ + + + +D E+
Sbjct: 124 MMRHYATHYPYPLELGLIEEAIAHLEGTHDFTGFTASGTSVEDKVRTITEAKVRYDAERN 183
Query: 191 FVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDL--PMAP 248
F + G F+ QIR MVG + I + I++ L P A
Sbjct: 184 F-------LVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILAEKDRHLAGPTAG 236
Query: 249 GLGLLLEQVHYD 260
GL L+++ Y+
Sbjct: 237 PNGLYLKEIRYE 248
>gi|297690638|ref|XP_002822721.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Pongo abelii]
Length = 481
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 119/290 (41%), Gaps = 70/290 (24%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K V + Q
Sbjct: 65 VALRIAYMGWGYQGFASQ---------ENTNNTIEEKLFEALTKTRLV-----ESRQTSN 110
Query: 61 FQRAARTDKGVSALKQIVSLKLPE---------------EANKEA--------INEHLPE 97
+ R RTDKGVSA Q++SL L EAN A +N LP
Sbjct: 111 YHRCGRTDKGVSAFGQVISLDLRSQFPRGKDSEDFNVKGEANAAAEEIRYTHILNRVLPP 170
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IRIL+ V F+++ +C RTY Y P + D + + ++
Sbjct: 171 DIRILAWAPVEPSFSARFSCLERTYRYFFP----------RADLDIVT-----MDYAAQK 215
Query: 158 YEGTHNFHNFTSKRKPLDPSCS-----RYIMSFDCE-------QPFVKDGLELITLKIKG 205
Y GTH+F N +D + R I+S + + ++ +L ++ G
Sbjct: 216 YVGTHDFRNLCK----MDVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTG 271
Query: 206 QSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
Q+F+ HQ+R M+ + I +G ++I++ +++ P P + +E
Sbjct: 272 QAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEKN--PQKPQYSMAIE 319
>gi|448511902|ref|ZP_21616281.1| tRNA pseudouridine synthase A [Halorubrum distributum JCM 9100]
gi|448519915|ref|ZP_21618122.1| tRNA pseudouridine synthase A [Halorubrum distributum JCM 10118]
gi|445694736|gb|ELZ46855.1| tRNA pseudouridine synthase A [Halorubrum distributum JCM 9100]
gi|445703479|gb|ELZ55409.1| tRNA pseudouridine synthase A [Halorubrum distributum JCM 10118]
Length = 305
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 83/187 (44%), Gaps = 19/187 (10%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQN-IQ 60
A AY G GY G Q R T+ ++EAL + G V +T
Sbjct: 14 AFRVAYDGRGYAGFQ----------RQPHASTVADALLEALAEHGVVERGDGSTHATPAG 63
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNAR 120
+ A RTD GVSA+ Q V+ + P A N HLP +R+ + V GF++ ++ R
Sbjct: 64 YAAAGRTDAGVSAVAQTVAFEAPTWLTPRAFNGHLPGSVRVWAAADVEGGFHATHDAVQR 123
Query: 121 TYSYT--CPTYAFATPQD-TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKR----KP 173
TY Y P + D T+ D D F +A L +++G H+FHN T+ +
Sbjct: 124 TYRYHLYAPESGSESGSDRTRRDPEHAVDDDRF-RAALARFDGEHDFHNLTTDETGTVRD 182
Query: 174 LDPSCSR 180
LD +R
Sbjct: 183 LDARATR 189
>gi|441661308|ref|XP_003280267.2| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Nomascus leucogenys]
Length = 163
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 63/108 (58%), Gaps = 14/108 (12%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 58 IVLLMAYSGKGYHGMQ----------RNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMR 107
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSI 104
+ FQR ARTDKGVSA Q+VSLK+ + E IN HLP IRIL +
Sbjct: 108 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRILGL 155
>gi|52548278|gb|AAU82127.1| pseudouridylate synthase [uncultured archaeon GZfos10C7]
Length = 284
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 123/299 (41%), Gaps = 46/299 (15%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ Y G Y G Q + + TIEG++ +AL K G + ED +
Sbjct: 10 IALKIGYIGTNYHGFQIQ--------PRSALPTIEGELFKALKKQGII-EDR----KTAN 56
Query: 61 FQRAARTDKGVSALKQIVSLKLP-EEANKEAINEHLPE-QIRILSIKRVTKGFNSKNNCN 118
+ A RTD GV AL Q+VS + IN LP+ I + +I + GFN++ +
Sbjct: 57 YSAAGRTDTGVHALAQVVSFVTSNQNTTPRMINSVLPDGSIWVSAIAKPYSGFNARRDAI 116
Query: 119 ARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSC 178
+R Y Y Y F + D R+ F+ GTH+F NF S + +
Sbjct: 117 SREYRY----YLFLQTELDLDITRMREASELFV--------GTHDFSNF-SLLQGNEYEV 163
Query: 179 SRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFG 238
+ Y D ++ VK + + I+ F+ +RK+V + G K IE
Sbjct: 164 AGYSTIRDIKRIEVKTKKPFVIIDIEASGFLRKMVRKIVSALRMVGSGMKDKRWIE---- 219
Query: 239 LDQFDLPM------APGLGLLLEQVHY-------DLYNQKYGQDGMHESLHFHEVDKEV 284
D DL + AP GL+L+ V Y D Y ++ + E L H EV
Sbjct: 220 -DLLDLRIKEGIEPAPAFGLVLKNVSYRDVKFVEDEYARRRIVTRLKEDLVLHATMAEV 277
>gi|452206040|ref|YP_007486162.1| tRNA pseudouridine synthase TruA [Natronomonas moolapensis 8.8.11]
gi|452082140|emb|CCQ35392.1| tRNA pseudouridine synthase TruA [Natronomonas moolapensis 8.8.11]
Length = 277
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 99/245 (40%), Gaps = 30/245 (12%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G GY G Q R +T+E ++ AL + G F+ +
Sbjct: 3 AFRLAYDGSGYRGFQ----------RQPHGETVEDELFAALRELGV----GFDGGSPAGY 48
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSA Q V+ + P A++ LP IR + V GF++ ++ R
Sbjct: 49 AAAGRTDAGVSARAQTVAFEAPAWLTPRALDGELPGAIRAWASADVEPGFHATHDATERV 108
Query: 122 YSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRY 181
Y Y +A A ++D D + ++ +FHNFT P D R
Sbjct: 109 YKYFL--HAPAAETGAREDVTAVDD--GRAREACRRLSAEADFHNFT----PDDEGTERA 160
Query: 182 I-MSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD 240
+ +S + PF + L+ + F +R++V V A+ARG I + G +
Sbjct: 161 VSVSTRRDGPF-------LILECRAGGFARQLVRRLVSVVEAVARGVRDPSFITRALGPE 213
Query: 241 QFDLP 245
P
Sbjct: 214 PLSGP 218
>gi|406600600|ref|YP_006745946.1| tRNA pseudouridine synthase A [Leuconostoc gelidum JB7]
gi|406372135|gb|AFS41060.1| tRNA pseudouridine synthase A [Leuconostoc gelidum JB7]
Length = 255
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 124/273 (45%), Gaps = 40/273 (14%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGM---KTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ +Y G G+FG Q + G+ +T++G++ +A V + + N I+
Sbjct: 7 IVSYDGSGFFGFQVQ--------TKDGVERQRTVQGELNKA------VNQMAKNPTHAIK 52
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEAN----KEAINEHLPEQIRILSIKRVTKGFNSKNN 116
A+RTD GV A Q+V LP + N ++ +N LP+ I I S+ +V F+++ N
Sbjct: 53 VVGASRTDTGVHAFGQVVHFDLPFDINVIGVRKGLNTLLPKDIIIRSVDQVANDFHARFN 112
Query: 117 CNARTYSYTCPTYAFATPQDTKDDF-RLTPDQFNF------LQALLKQYEGTHNFHNFTS 169
+A+ Y Y T QD D F R F++ ++ L G H+F +F +
Sbjct: 113 THAKRYVYRVST------QDFTDPFKRFYTGHFHWKLDVERIKIALPDLLGEHDFASFAA 166
Query: 170 KRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTS 229
+ + + + D ELI L +G +F+ +QIR MVGV + I G
Sbjct: 167 SG---NQTITTIRTITRADIKVNNDDQELI-LTFEGNAFLYNQIRIMVGVLLEIGNGRRD 222
Query: 230 KDLIEKTFGLDQFDLP--MAPGLGLLLEQVHYD 260
I + + + AP GL L++++YD
Sbjct: 223 VHDIIRLIAVKDREQARFTAPASGLYLDEIYYD 255
>gi|448547278|ref|ZP_21626756.1| tRNA pseudouridine synthase A [Haloferax sp. ATCC BAA-645]
gi|448556156|ref|ZP_21631881.1| tRNA pseudouridine synthase A [Haloferax sp. ATCC BAA-644]
gi|445716289|gb|ELZ68033.1| tRNA pseudouridine synthase A [Haloferax sp. ATCC BAA-645]
gi|445716908|gb|ELZ68637.1| tRNA pseudouridine synthase A [Haloferax sp. ATCC BAA-644]
Length = 283
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 101/262 (38%), Gaps = 41/262 (15%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G Y G Q R + T+E + +A G +D T +
Sbjct: 3 AFRVAYDGRPYHGFQ----------RQPDVPTVEDALFDACRALGVCDDDEEPT----GY 48
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSAL Q V+ P+ A+N LP +R + F++++ R
Sbjct: 49 AAAGRTDAGVSALAQTVAFDCPDWCTPRALNSELPGTVRAWAAADAPDDFHARHRPARRE 108
Query: 122 YSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRY 181
Y Y P D DD R +A G H+FHN T P D R
Sbjct: 109 Y-----VYDLHAPSDGFDDDR--------AKAAFDACRGDHDFHNLT----PDDHGTVRT 151
Query: 182 IMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQ 241
I + +DG + + ++++ F +R+++ + A+ G ++ G D
Sbjct: 152 I-----DGDLTRDG-DFLLVRVEAGGFARELVRRLISLVRAVGSGAAPLSKVDDALGPDH 205
Query: 242 FDLP----MAPGLGLLLEQVHY 259
D P AP LLL V Y
Sbjct: 206 LDGPEGIAPAPPTPLLLTAVDY 227
>gi|406889676|gb|EKD35801.1| hypothetical protein ACD_75C01773G0002 [uncultured bacterium]
Length = 260
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 120/268 (44%), Gaps = 39/268 (14%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
++ Y G + G Q + +T++GD+++A A V E + + Q
Sbjct: 12 LVLEYDGTNFSGWQ----------KQADARTVQGDVLKA--AARVVGEVAMD------LQ 53
Query: 63 RAARTDKGVSALKQI----VSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
RTD GV AL+ + V+ K+P E + + E LP+ I +L++ + F+++ +C
Sbjct: 54 GCGRTDGGVHALEYVAHLEVASKMPPEEVERRLAEELPKDIALLAVTKADPRFHARYSCL 113
Query: 119 ARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSC 178
AR+Y Y T A + R P + EG H+F F K++ L S
Sbjct: 114 ARSYVYQLRTRKSAFGKRYGWWMR-EPLDLAVMHQAAAVMEGMHDFAAFAEKQE-LKKST 171
Query: 179 SRYIMSFDCEQ-PFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTF 237
D +Q F+ +G LI L++ G F+ H +R+MVGV + + + +
Sbjct: 172 -----KVDVQQIRFLVEG-HLIRLRVVGSHFLWHMVRRMVGVLVEVG---CHRLSVADVQ 222
Query: 238 GLDQ--FDLP---MAPGLGLLLEQVHYD 260
GL Q ++P AP GL E+ YD
Sbjct: 223 GLLQGPSEIPGNHTAPAAGLFFEKAFYD 250
>gi|448544901|ref|ZP_21625714.1| tRNA pseudouridine synthase A [Haloferax sp. ATCC BAA-646]
gi|445704679|gb|ELZ56588.1| tRNA pseudouridine synthase A [Haloferax sp. ATCC BAA-646]
Length = 272
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 101/262 (38%), Gaps = 41/262 (15%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G Y G Q R + T+E + +A G +D T +
Sbjct: 3 AFRVAYDGRPYHGFQ----------RQPDVPTVEDALFDACRALGVCDDDEEPT----GY 48
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSAL Q V+ P+ A+N LP +R + F++++ R
Sbjct: 49 AAAGRTDAGVSALAQTVAFDCPDWCTPRALNSELPGTVRAWAAADAPDDFHARHRPARRE 108
Query: 122 YSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRY 181
Y Y P D DD R +A G H+FHN T P D R
Sbjct: 109 Y-----VYDLHAPSDGFDDDR--------AKAAFDACRGDHDFHNLT----PDDHGTVRT 151
Query: 182 IMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQ 241
I + +DG + + ++++ F +R+++ + A+ G ++ G D
Sbjct: 152 I-----DGDLTRDG-DFLLVRVEAGGFARELVRRLISLVRAVGSGAAPLSKVDDALGPDH 205
Query: 242 FDLP----MAPGLGLLLEQVHY 259
D P AP LLL V Y
Sbjct: 206 LDGPEGIAPAPPTPLLLTAVDY 227
>gi|344291496|ref|XP_003417471.1| PREDICTED: tRNA pseudouridine synthase 3-like [Loxodonta africana]
Length = 480
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 115/276 (41%), Gaps = 68/276 (24%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G Y G S+ TIE + EAL K V + Q
Sbjct: 64 VALRIAYLGWSYQGFASQ---------ENTNNTIEEKLFEALTKTRLV-----ESRQTSN 109
Query: 61 FQRAARTDKGVSALKQIVSL---------------KLPEEANKEA--------INEHLPE 97
+ R RTDKGVSA Q++SL +L +EAN A +N LP
Sbjct: 110 YHRCGRTDKGVSAFGQVISLDLRSHFPKDKDSEDFQLKDEANDSAKEIRYTHILNRVLPP 169
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IRIL+ V F+++ +C RTY Y P + D + + ++
Sbjct: 170 DIRILAWAPVEPAFSARFSCLERTYRYFFP----------RADLDIA-----IMSYAAQK 214
Query: 158 YEGTHNFHNFTSKRKPLDPSC-----SRYIMSFDCE-------QPFVKDGLELITLKIKG 205
Y GTH+F N +D + R I+S + + ++ +L ++ G
Sbjct: 215 YVGTHDFRNLCK----MDVANGVINFQRTILSAQVQLVGQSRGEDRWEESFQLCQFEVTG 270
Query: 206 QSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQ 241
Q+F+ HQ+R M+ + I +G ++I++ +++
Sbjct: 271 QAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEK 306
>gi|329768896|ref|ZP_08260324.1| tRNA pseudouridine synthase A [Gemella sanguinis M325]
gi|328837259|gb|EGF86896.1| tRNA pseudouridine synthase A [Gemella sanguinis M325]
Length = 262
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 101/216 (46%), Gaps = 20/216 (9%)
Query: 57 QNIQFQRAARTDKGVSALKQIV----SLKLPEEANKEAINEHLPEQIRILSIKRVTKGFN 112
+N++ + RTD GV A Q++ L +P + +AIN +P+ IRI+S K V F+
Sbjct: 40 KNVRIYMSGRTDSGVHAYGQVLHFDTDLNIPTDGWVKAINAMIPKDIRIVSAKVVNDEFH 99
Query: 113 SKNNCNARTYSYTC----PTYAFATPQDTKDDFRLTPDQFNFLQA--LLKQYEGTHNFHN 166
+ N +TYSY F + F FNF +A LK + G H+F +
Sbjct: 100 VRYNSIKKTYSYKLYLGREIDPFLINYVGQHKF-----NFNFDKAKEALKYFIGEHDFSS 154
Query: 167 FTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARG 226
F SK ++ R I SF ++ D +I +I G F+ + +R ++G +A G
Sbjct: 155 FCSKNTSVEDKV-RTIYSFKMDRDNQNDN--IINFEITGNGFLYNMVRIIIGTVQDVAAG 211
Query: 227 FTSKDLIEKTFGLDQ--FDLPMAPGLGLLLEQVHYD 260
+ I++ + F P A GL L++V YD
Sbjct: 212 KYEPEYIQEILAKKERSFSGPKADASGLYLKEVLYD 247
>gi|242040775|ref|XP_002467782.1| hypothetical protein SORBIDRAFT_01g033960 [Sorghum bicolor]
gi|241921636|gb|EER94780.1| hypothetical protein SORBIDRAFT_01g033960 [Sorghum bicolor]
Length = 459
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 85/363 (23%), Positives = 141/363 (38%), Gaps = 62/363 (17%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ Y G ++G S+ T+E +I +AL +A + + +
Sbjct: 124 VALKVMYFGQRFYGFSSE---------GNTEPTVESEIFKALERAKLMV----GSRKESC 170
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK---------------EAINEHLPEQIRILSIK 105
+ R RTDKGVSA Q++SL L + +N LP IR+L
Sbjct: 171 YSRCGRTDKGVSATGQVISLYLRSNIKDVGGDMLDERSEIDYVKVLNRILPRDIRVLGWC 230
Query: 106 RVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFH 165
V F+++ C +R Y Y K D + +Q ++ G H+F
Sbjct: 231 PVPADFHARFTCLSREYKYLF----------WKGDLDILE-----MQKAASKFIGEHDFR 275
Query: 166 NFTSKRKPLDPSCSRYIMSFD---CEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMA 222
NF + R I F C++ D EL ++ IKG +F+ HQ+R MV V
Sbjct: 276 NFCKMDAANVSNYRRRITEFTISACDRRSNND--ELCSMMIKGSAFLWHQVRCMVAVLFL 333
Query: 223 IARGFTSKDLIEKTFGLDQF----DLPMAPGLGLLLEQVHYDLYNQKYGQDG-------M 271
I +G S +++ + + MAP L L+L +D N D
Sbjct: 334 IGQGLESPSVVDSLLDITKTPRKPQYKMAPELPLILRSCLFDKANFMCSSDASQSLTEHF 393
Query: 272 HESLHFHEVDKEVNEFRHK---FILPYLVKTEITEKPMLAWLELLADHSFETRAAKAALA 328
++ H H + E+ F P ++T ++ + L + S+E R +K
Sbjct: 394 NDEYHHHMLQAEIFHIASSCLPFPEPNSLETLQKKRNHIPLLSRQTEPSYEERISKVKTK 453
Query: 329 AAN 331
A+
Sbjct: 454 VAD 456
>gi|385808937|ref|YP_005845333.1| tRNA pseudouridine synthase A [Ignavibacterium album JCM 16511]
gi|383800985|gb|AFH48065.1| tRNA pseudouridine synthase A [Ignavibacterium album JCM 16511]
Length = 287
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 124/270 (45%), Gaps = 43/270 (15%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
+ Y G + G Q + +TI+G++++A K + D F + Q
Sbjct: 29 LFLEYEGTRFSGWQ----------KQPNARTIQGELIKACEK---IFGDDF-----VDLQ 70
Query: 63 RAARTDKGVSALKQIVSLK----LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ RTD GV AL Q+ L L E K +N+ LP I IL +++ K F+++++
Sbjct: 71 GSGRTDSGVHALCQVAHLDAKTVLAPEIIKLKLNDSLPHDINILEVEKARKNFHARHDVK 130
Query: 119 ARTYSYTCPTYAFATPQD----TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
+R+Y Y A ++ KD+ F + + K + G H+F +F+
Sbjct: 131 SRSYIYQISERRTAFGKNFVWWIKDNL-----DFEAMNSASKIFLGLHDFVSFSDD---- 181
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
DP + D Q +K ELI ++I G F+ +R++VGV + + RG SK I
Sbjct: 182 DPEEKSTKVLIDNIQ--LKKEDELILIRIIGSHFIWKMVRRIVGVLVEVGRGKKSKSDI- 238
Query: 235 KTFGL-DQFDLP---MAPGLGLLLEQVHYD 260
F L ++ D P AP GL LE+V Y+
Sbjct: 239 -LFYLNNKSDEPARFTAPPSGLFLEKVFYE 267
>gi|333398834|ref|ZP_08480647.1| tRNA pseudouridine synthase A [Leuconostoc gelidum KCTC 3527]
Length = 266
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 124/273 (45%), Gaps = 40/273 (14%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGM---KTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ +Y G G+FG Q + G+ +T++G++ +A V + + N I+
Sbjct: 18 IVSYDGSGFFGFQVQ--------TKDGVERQRTVQGELNKA------VNQMAKNPTHAIK 63
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEAN----KEAINEHLPEQIRILSIKRVTKGFNSKNN 116
A+RTD GV A Q+V LP + N ++ +N LP+ I I S+ +V F+++ N
Sbjct: 64 VVGASRTDTGVHAFGQVVHFDLPFDINVIGVRKGLNTLLPKDIIIRSVDQVANDFHARFN 123
Query: 117 CNARTYSYTCPTYAFATPQDTKDDF-RLTPDQFNF------LQALLKQYEGTHNFHNFTS 169
+A+ Y Y T QD D F R F++ ++ L G H+F +F +
Sbjct: 124 THAKRYVYRVST------QDFTDPFKRFYTGHFHWKLDVERIKIALPDLLGEHDFASFAA 177
Query: 170 KRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTS 229
+ + + + D ELI L +G +F+ +QIR MVGV + I G
Sbjct: 178 SG---NQTITTIRTITRADIKVNNDDQELI-LTFEGNAFLYNQIRIMVGVLLEIGNGRRD 233
Query: 230 KDLIEKTFGLDQFDLP--MAPGLGLLLEQVHYD 260
I + + + AP GL L++++YD
Sbjct: 234 VHDIIRLIAVKDREQARFTAPASGLYLDEIYYD 266
>gi|450047043|ref|ZP_21839291.1| tRNA pseudouridine synthase A [Streptococcus mutans N34]
gi|450158933|ref|ZP_21879126.1| tRNA pseudouridine synthase A [Streptococcus mutans 66-2A]
gi|449198042|gb|EMB99174.1| tRNA pseudouridine synthase A [Streptococcus mutans N34]
gi|449241792|gb|EMC40410.1| tRNA pseudouridine synthase A [Streptococcus mutans 66-2A]
Length = 249
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 116/267 (43%), Gaps = 35/267 (13%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G + G Q R M+T++ +I + L + N+ Q ++
Sbjct: 7 IISYDGTNFSGFQ----------RQPQMRTVQEEIEKTLLR--------LNSGQAVKIHG 48
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV A Q++ LP++ + E ++ P+ I ++ +++V F+++ + +
Sbjct: 49 AGRTDAGVHAYGQVIHFDLPQQRDLEKLRFGLDTQTPDDIDVIQVEQVADDFHARYHKHR 108
Query: 120 RTYSYTC----PTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+TY + P T +++ F+ ++A +K+ GTH+F FT+ ++
Sbjct: 109 KTYEFLVDLGRPKNPLMRHYATHFPYKV---DFSVVKAAIKKLRGTHDFTGFTASGTSVE 165
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
R I E+ D + G F+ Q+R MVG + I G D I++
Sbjct: 166 NKV-RTISRATVEK---DDKTGFLIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPIDQIDR 221
Query: 236 TF--GLDQFDLPMAPGLGLLLEQVHYD 260
G P A GL L+++ YD
Sbjct: 222 ILESGDRSLAGPTAASNGLYLKEIIYD 248
>gi|448414876|ref|ZP_21577825.1| tRNA pseudouridine synthase A [Halosarcina pallida JCM 14848]
gi|445681573|gb|ELZ34003.1| tRNA pseudouridine synthase A [Halosarcina pallida JCM 14848]
Length = 284
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 104/263 (39%), Gaps = 43/263 (16%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G ++G Q R + T+E ++ +AL + G ++ P +
Sbjct: 15 AFRIAYDGRPFYGFQ----------RQPSVPTVENELFDALDRLGAFDAEADRKPPG--Y 62
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSAL Q V PE A+N LP +R + + F++ ++ R
Sbjct: 63 AAAGRTDAGVSALGQTVGFDCPEWCTPRALNAELPADVRAWAAADAPEDFHATHDAVRRE 122
Query: 122 YSYTCPTYAFATPQDTKDDFRLTP-DQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSR 180
Y Y R P +A G H+FHN T D +
Sbjct: 123 YVYD----------------RYAPDADPALARAAADALSGEHDFHNLTG-----DDDGTV 161
Query: 181 YIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD 240
+S D + DG E + +++ F +R++V + +A G S ++ G +
Sbjct: 162 RDLSVDVD----PDG-EFLVVRVAADGFSYELVRRLVSLVHGVAAGDRSPASVKDVLGPE 216
Query: 241 QFD----LPMAPGLGLLLEQVHY 259
+P AP LLLE+V Y
Sbjct: 217 PLTGAEAVPAAPPEPLLLERVVY 239
>gi|153005130|ref|YP_001379455.1| tRNA-pseudouridine synthase I [Anaeromyxobacter sp. Fw109-5]
gi|152028703|gb|ABS26471.1| tRNA-pseudouridine synthase I [Anaeromyxobacter sp. Fw109-5]
Length = 265
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 101/251 (40%), Gaps = 28/251 (11%)
Query: 22 FLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLK 81
F F R G+ T++ + AL AG AARTD GV AL Q+VS
Sbjct: 17 FRGFQRQPGLPTVQDALEGALLAAGV----------RATLAVAARTDAGVHALDQVVSFS 66
Query: 82 ----LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTC---PTYAFATP 134
L A + A+N LPE + +L + RV F+++N AR Y Y P + A
Sbjct: 67 ARAALDPAALRGALNAALPEGVAVLEVLRVAPSFHARNTARARRYVYLVGAPPPESLAAY 126
Query: 135 QDTKDDFRLTPDQFNFLQALLKQYE-----GTHNFHNFTSKRKPLDPSCSRYIMSFDCEQ 189
T D R PD L GTH+F F +P + + + + +
Sbjct: 127 AWTLPDPRAFPDGEARLDVAAMSAALAHAVGTHDFTAFA---RPGEQRGT--VRTVTRAE 181
Query: 190 PFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLI-EKTFGLDQFDLPMAP 248
L L +G F+ IR + G A+ + G + +++ E ++ AP
Sbjct: 182 VVSATWAPLHALVFEGHGFLRAMIRNLAGTAVTVGVGRAAPEIVRELLLARGRYRGVRAP 241
Query: 249 GLGLLLEQVHY 259
G GL L V Y
Sbjct: 242 GWGLTLASVVY 252
>gi|47214586|emb|CAG00940.1| unnamed protein product [Tetraodon nigroviridis]
Length = 412
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/310 (22%), Positives = 125/310 (40%), Gaps = 74/310 (23%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G Y G + T+E + EAL K + + Q+
Sbjct: 75 VALRLAYLGWAYQGFA---------VQENTDNTVEARLFEALHKTCLIQDR-----QSSN 120
Query: 61 FQRAARTDKGVSALKQIVSL-------------KLPE--EANKEA------------INE 93
+ R RTDKGVSA Q++++ KLPE +A+K++ +N
Sbjct: 121 YHRCGRTDKGVSAFSQVITIESRSTQFCGGLGVKLPENVDADKKSQTAVSELPYVKMLNR 180
Query: 94 HLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQA 153
LP IRI + +GF+++ +C +RTY Y P + +
Sbjct: 181 VLPHDIRIWNWAPAAEGFSARFDCQSRTYRYYFPRGSL---------------NVELMAD 225
Query: 154 LLKQYEGTHNFHNFTS----------KRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKI 203
++YEGTH+F N +R L S + + E D ++ ++
Sbjct: 226 AAERYEGTHDFRNLCKMDVGNGVLQFERTILSSS----VTPVNPEHASSTDQYDIFVFEV 281
Query: 204 KGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD----QFDLPMAPGLGLLLEQVHY 259
+G +F+ HQ+R M+ + + I + + ++I + + + MA L+L H+
Sbjct: 282 RGLAFLYHQVRCMMALLLLIGQKLEAPEIINQLLDVQSNPRKPQYSMAVDYPLVLYHCHF 341
Query: 260 DLYNQKYGQD 269
+ + + D
Sbjct: 342 EGLDWQQSND 351
>gi|325678788|ref|ZP_08158386.1| tRNA pseudouridine synthase A [Ruminococcus albus 8]
gi|324109292|gb|EGC03510.1| tRNA pseudouridine synthase A [Ruminococcus albus 8]
Length = 250
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 107/267 (40%), Gaps = 36/267 (13%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
+ AY G GY G Q R ++ + A+FK T + + Q
Sbjct: 6 VTLAYDGSGYHGWQ----------RQSNALAVQEVVENAIFKL---------TGEKVVVQ 46
Query: 63 RAARTDKGVSALKQIVSLKLPEEANKEAI----NEHLPEQIRILSIKRVTKGFNSKNNCN 118
+RTD GV A ++S++L I N LP+ I ++ + GF+++ +C
Sbjct: 47 GCSRTDAGVHARMYVLSMELESTITPRGIQLGLNSWLPDDISVIGCEECEAGFHARYHCK 106
Query: 119 ARTYSYTCPTYAFATPQDTKDDFRLT-PDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPS 177
+ Y Y P FR T P L K Y G H+F F S + +
Sbjct: 107 GKEYEYIVHNSRIKDPFLKNTAFRNTYPIDEVLLDKAAKDYVGEHDFKAFCSTACDKEIT 166
Query: 178 CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTF 237
R I FD V+ EL+ + G F+ + +R MVG + I G + D I +
Sbjct: 167 V-RTIYRFD-----VRREGELVIFTVAGNGFLYNMVRIMVGTLLFINEGKIAADAIPRI- 219
Query: 238 GLDQFDLPMA----PGLGLLLEQVHYD 260
++ D A P GL L +V+YD
Sbjct: 220 -IESKDRTKAGKTVPPQGLYLNKVYYD 245
>gi|66361768|ref|XP_627406.1| Deg1p-like type II pseudouridylate synthase TruA [Cryptosporidium
parvum Iowa II]
gi|46228868|gb|EAK89738.1| Deg1p-like type II pseudouridylate synthase TruA [Cryptosporidium
parvum Iowa II]
Length = 283
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/263 (25%), Positives = 116/263 (44%), Gaps = 30/263 (11%)
Query: 20 LFF--LIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQI 77
+FF + F ++ + TIEG+I +AL + + + + R RTD+GV +
Sbjct: 2 IFFQGIAFQKDDKIPTIEGEIYKALLQLRLIKD-----IDSCDLVRCGRTDRGVHSAGNY 56
Query: 78 VSLKLPEEANK-------EAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYA 130
+S+ L A E +N LP IR++ V F+++ +C R Y Y P
Sbjct: 57 ISVNLRTRAKNLEPYNYMEMLNGVLPWDIRVIGYCEVRPDFSARFDCEYRLYKYFFPL-- 114
Query: 131 FATPQDTK-DDF-RLTPDQFNFLQALLKQYEGTHNFHNFTSK--RKPLDPSCSRYIMSFD 186
+ TK F ++ P+Q + KQ+ GTH++ F + + + R I FD
Sbjct: 115 --NHERTKISKFPKIPPEQVPLMNVAAKQFLGTHDYRRFCKMDLKNRKNQTYIRTIYEFD 172
Query: 187 CEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTF------GLD 240
FV + IKG +F+ HQ+R M+G+ I + + ++I + +
Sbjct: 173 IN--FVDENRTFAVATIKGSAFLWHQVRLMMGILFEIGQQKFNPEVITQMLTDVEQKNIA 230
Query: 241 QFDLPMAPGLGLLLEQVHYDLYN 263
+ MA LGL+L + Y+
Sbjct: 231 ELSFQMATELGLVLWDCVFKEYD 253
>gi|450087981|ref|ZP_21854575.1| tRNA pseudouridine synthase A [Streptococcus mutans NV1996]
gi|450125679|ref|ZP_21867762.1| tRNA pseudouridine synthase A [Streptococcus mutans U2A]
gi|449217093|gb|EMC17168.1| tRNA pseudouridine synthase A [Streptococcus mutans NV1996]
gi|449232201|gb|EMC31327.1| tRNA pseudouridine synthase A [Streptococcus mutans U2A]
Length = 249
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 115/267 (43%), Gaps = 35/267 (13%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G + G Q R M+T++ +I + L + N+ Q ++
Sbjct: 7 IISYDGTNFSGFQ----------RQPQMRTVQEEIEKTLLR--------LNSGQAVKIHG 48
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV A Q++ LP++ + E ++ P+ I ++ +++V F+++ +
Sbjct: 49 AGRTDAGVHAYGQVIHFDLPQQRDLEKLRFGLDTQTPDDIDVIQVEQVADNFHARYQKHR 108
Query: 120 RTYSYTC----PTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+TY + P T +++ F+ ++A +K+ GTH+F FT+ ++
Sbjct: 109 KTYEFLVDLGRPKNPLMRHYATHFPYKV---DFSVVKAAIKKLRGTHDFTGFTASGTSVE 165
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
R I E+ D + G F+ Q+R MVG + I G D I++
Sbjct: 166 NKV-RTISRATVEK---DDKTGFLIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPIDQIDR 221
Query: 236 TF--GLDQFDLPMAPGLGLLLEQVHYD 260
G P A GL L+++ YD
Sbjct: 222 ILESGDRSLAGPTAASNGLYLKEIIYD 248
>gi|410895609|ref|XP_003961292.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Takifugu
rubripes]
Length = 447
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 73/316 (23%), Positives = 124/316 (39%), Gaps = 74/316 (23%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G Y G + N G T+E + EAL K + + Q
Sbjct: 73 VALRLAYLGWSYQGFAVQ--------ENTG-HTVEARLFEALQKTCLIQDR-----QTSN 118
Query: 61 FQRAARTDKGVSALKQIVSL-------------KLPEEANKEA--------------INE 93
+ R RTDKGVSA Q++++ +LPE + A +N
Sbjct: 119 YHRCGRTDKGVSAFSQVITIDLRSTQFCGGLGVRLPETVDAGAKTKAAVSELPYVKMLNR 178
Query: 94 HLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQA 153
LP+ IRIL +GF+++ +C +RTY Y P A +
Sbjct: 179 VLPQDIRILDWAPAEEGFSARFDCQSRTYRYYFPRGAL---------------NLELMAD 223
Query: 154 LLKQYEGTHNFHNFTS----------KRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKI 203
K+YEG H+F N +R L S I + D ++ ++
Sbjct: 224 AAKRYEGKHDFRNLCKMDVGNGVLQFERTILSAS----IRPVNPIHASSTDQYDIFIFEV 279
Query: 204 KGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD----QFDLPMAPGLGLLLEQVHY 259
KG +F+ HQ+R M+ + + I + + ++I + + + MA L+L H+
Sbjct: 280 KGLAFLYHQVRCMMALLLLIGQELEAPEIINQLLDVQSNPRKPQYSMAVDYPLVLHDCHF 339
Query: 260 DLYNQKYGQDGMHESL 275
+ + + D ++ L
Sbjct: 340 EGLDWQQSNDEVNHVL 355
>gi|409095808|ref|ZP_11215832.1| tRNA pseudouridine synthase A [Thermococcus zilligii AN1]
Length = 269
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 125/279 (44%), Gaps = 43/279 (15%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G ++G Q R G++T+E +++ L K G + + P +
Sbjct: 4 LALRIAYDGTAFYGFQ----------RQPGVRTVEDEVIRVLQKLGIIRD-----PVTSE 48
Query: 61 FQRAARTDKGVSALKQIVS-LKLPEEAN---KEAINEHLPEQIRILSIKRVTKGFNSKNN 116
F+ A+RTD GVSA +VS + +PE+A+ +N HL + + ++ + V F+ +
Sbjct: 49 FKGASRTDSGVSAFFNVVSFVPVPEKAHLATPRVLNHHL-KDVWVVGVSEVPAEFHPRFW 107
Query: 117 CNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDP 176
+TY Y Y D F + + + GTH+F F DP
Sbjct: 108 AKEKTYRY----YLIDMGHD-----------FGEMVKCARSFIGTHDFSAFARPEPGRDP 152
Query: 177 SCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKT 236
R + S + + G ++ ++ G+SF+ +R++V G S++ +E+
Sbjct: 153 --VREVRSIEV---IPRQGYYIV--EVSGKSFLWEMVRRIVNAISYCGLGLLSREDVERM 205
Query: 237 F-GLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHES 274
G +P AP L+L ++ Y+ + ++G+ ++
Sbjct: 206 LSGEVDKKIPPAPPENLVLWRIEYEGITFETDEEGLKKA 244
>gi|85860424|ref|YP_462626.1| tRNA pseudouridine synthase A [Syntrophus aciditrophicus SB]
gi|85723515|gb|ABC78458.1| tRNA pseudouridine synthase A [Syntrophus aciditrophicus SB]
Length = 328
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 117/269 (43%), Gaps = 41/269 (15%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
+ Y G GY G Q + + K+I+G ++ V ED P +IQ
Sbjct: 69 LTLEYDGTGYSGWQMQ----------KNAKSIQGTLLR-------VAEDLLGGPVDIQG- 110
Query: 63 RAARTDKGVSALKQIVSL----KLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
A RTD GV AL Q+ L ++P E +N+ LP I IL ++ F+++++
Sbjct: 111 -AGRTDAGVHALAQVAHLETTRRMPPRKLLEGLNDALPSSINILRVEEAPPLFHARHSAQ 169
Query: 119 ARTYSYTCPTYAFATPQD----TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
R+Y Y + A + +D L +QA + + G H+F +F KR +
Sbjct: 170 LRSYLYVISGHRTAFGKRYVWWIRDHLEL-----KKMQAASRLFAGFHDFSSFADKR--M 222
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIAR---GFTSKD 231
D + E + +LI ++ G F+ +R+MVGV + + R +
Sbjct: 223 DKQAPTRV---KVEATELHASGDLIFFRVTGSHFLWKMVRRMVGVMVEVGREKLDISDVR 279
Query: 232 LIEKTFGLDQFDLPMAPGLGLLLEQVHYD 260
+ K++ + L AP GL LE+V Y+
Sbjct: 280 QMLKSYSPEPARL-TAPPSGLYLERVLYE 307
>gi|450007375|ref|ZP_21827750.1| tRNA pseudouridine synthase A [Streptococcus mutans NMT4863]
gi|449186450|gb|EMB88281.1| tRNA pseudouridine synthase A [Streptococcus mutans NMT4863]
Length = 249
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/271 (22%), Positives = 118/271 (43%), Gaps = 41/271 (15%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
++ +Y G + G Q R M+T++ +I + L + N+ Q ++
Sbjct: 6 VIISYDGTNFSGFQ----------RQPQMRTVQEEIEKTLLR--------LNSGQAVKIH 47
Query: 63 RAARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCN 118
A RTD GV A Q++ LP++ + E ++ P+ I ++ +++V F+++ +
Sbjct: 48 GAGRTDAGVHAYGQVIHFDLPQQRDLEKLRFGLDTQTPDDIDVIQVEQVADDFHARYQKH 107
Query: 119 ARTYSYTC----PTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
+TY + P T +++ F+ ++A +K+ GTH+F FT+ +
Sbjct: 108 RKTYEFLVDLGRPKNPLMRHYATHFPYKV---DFSVVKAAIKKLRGTHDFTGFTAAGTSV 164
Query: 175 D---PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKD 231
+ + SR + D + F + G F+ Q+R MVG + I G D
Sbjct: 165 ENKVRTISRATVEKDGKTGF-------LIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPID 217
Query: 232 LIEKTF--GLDQFDLPMAPGLGLLLEQVHYD 260
I++ G P A GL L+++ YD
Sbjct: 218 QIDRILESGDRSLAGPTAASNGLYLKEIIYD 248
>gi|435850369|ref|YP_007311955.1| pseudouridylate synthase I [Methanomethylovorans hollandica DSM
15978]
gi|433660999|gb|AGB48425.1| pseudouridylate synthase I [Methanomethylovorans hollandica DSM
15978]
Length = 269
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 123/298 (41%), Gaps = 53/298 (17%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G Q + + TIEG++ AL + D + P+
Sbjct: 3 VALKIAYVGTGYHGSQIQ----------SDVATIEGELFNALKEL-----DIIDDPKTAS 47
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
FQ + RTD GV A Q+V+ P + IN LP I + V F+ + + N
Sbjct: 48 FQSSGRTDAGVHARGQVVAFNTDKPNLSIPRVINSKLPNSIWAWAHAEVPYDFDPRRDAN 107
Query: 119 ARTYSYTCPTYAFATPQDTKDDFRLTPDQFNF--LQALLKQYEGTHNFHNFTSKRKPLDP 176
+R Y Y ++ +Q++ +++ K G H+F NF SK + D
Sbjct: 108 SRVYRYI-----------------MSGEQYDISRIRSASKILAGEHDFSNFCSKDE--DK 148
Query: 177 SCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKT 236
S R + D V+ L + I+ SF+ + +RK+V + + +++
Sbjct: 149 STVRDVKRID-----VRVSGALTKIDIEANSFLWNMVRKIVTALTMVGSLIRDEAWLKQM 203
Query: 237 FGLDQFDLPMAPG--LGLLLEQVH--------YDLYNQKYGQDGMHESLHFHEVDKEV 284
+ ++ + P GL L +V YD Y+ + + + E L H V EV
Sbjct: 204 LEPESYEEGLEPAQSYGLTLMEVKYPMPIQWVYDSYSLRRASEKVQEYLVRHRVMAEV 261
>gi|328873726|gb|EGG22093.1| hypothetical protein DFA_01983 [Dictyostelium fasciculatum]
Length = 604
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 91/183 (49%), Gaps = 29/183 (15%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+AM+F+Y G G+FGL+ Y + +E + +ALF +G + +F I+
Sbjct: 156 VAMLFSYVGTGHFGLEYTY--------EEKYPALENYLEKALFLSGMILPTNFGDVTRIK 207
Query: 61 FQRAARTDKGVSALKQIV--SLKLPEE---------ANKEAINEHLPEQIRILSIKRVTK 109
+ R++RTDKGV +L I+ S+ + E A + IN +LP + I+S+ ++
Sbjct: 208 WSRSSRTDKGVHSLSTIIGASILINREKIQTKEGVRAYIDQINSYLPPTLHIVSMATTSR 267
Query: 110 GFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTS 169
F + ++RTY Y P + T + N + +L + GT+++HNFT+
Sbjct: 268 SFMPRRQTSSRTYHYVLPKKFLGN--------QFTLQEIN--EKILSLFIGTNSYHNFTT 317
Query: 170 KRK 172
RK
Sbjct: 318 LRK 320
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 14/151 (9%)
Query: 180 RYIMSFDCEQPFVKDG-----LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
R I SF + F+ + E + I+G+SF+ +QIRKMVG +A+ G ++E
Sbjct: 417 RKIHSFTIGETFLVESNDQQQEEWVKFMIEGESFIQYQIRKMVGFVLAVCHGLVDVKILE 476
Query: 235 KTF-GLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHF---HEVDKEVNEFRHK 290
G + P+AP L L YD + D ++ E+ K+ N F K
Sbjct: 477 IALKGPFSINSPIAPPDTLYL----YDCRVNERKSDVLYNVFSMETKEEIQKDKNLFCSK 532
Query: 291 FILPYLVKTEITEKPMLAWLE-LLADHSFET 320
+ P+L + +K +++E L H F T
Sbjct: 533 QLYPHLNQLNNQKKFFESFIEKALPSHYFST 563
>gi|448607820|ref|ZP_21659773.1| tRNA pseudouridine synthase A [Haloferax sulfurifontis ATCC
BAA-897]
gi|445737757|gb|ELZ89289.1| tRNA pseudouridine synthase A [Haloferax sulfurifontis ATCC
BAA-897]
Length = 283
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 95/244 (38%), Gaps = 37/244 (15%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G Y G Q R + T+E + +A G +D T +
Sbjct: 3 AFRVAYDGRPYHGFQ----------RQPDVPTVEDALFDACRALGVCDDDEEPT----DY 48
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSAL Q V+ P+ A+N LP +R + F++++ R
Sbjct: 49 AAAGRTDAGVSALAQTVAFDCPDWCTPRALNSELPGTVRAWAAADAPDDFHARHRPTRRE 108
Query: 122 YSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRY 181
Y Y P D DD R + A G H+FHN T P R
Sbjct: 109 Y-----VYDLHVPSDGFDDDRAS--------AAFDACRGEHDFHNLT-------PDDHRT 148
Query: 182 IMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQ 241
+ + D + +DG + + ++++ F +R++V + A+ G ++ G D
Sbjct: 149 VRAIDGD--LTRDG-DFLLVRVEAGGFARELVRRLVSLVRAVGSGAAPPSKVDDVLGPDH 205
Query: 242 FDLP 245
D P
Sbjct: 206 LDGP 209
>gi|449892202|ref|ZP_21788320.1| tRNA pseudouridine synthase A [Streptococcus mutans SF12]
gi|449896854|ref|ZP_21789971.1| tRNA pseudouridine synthase A [Streptococcus mutans R221]
gi|449903248|ref|ZP_21792043.1| tRNA pseudouridine synthase A [Streptococcus mutans M230]
gi|449931466|ref|ZP_21802379.1| tRNA pseudouridine synthase A [Streptococcus mutans 3SN1]
gi|449970439|ref|ZP_21813823.1| tRNA pseudouridine synthase A [Streptococcus mutans 2VS1]
gi|450057822|ref|ZP_21842779.1| tRNA pseudouridine synthase A [Streptococcus mutans NLML4]
gi|450072303|ref|ZP_21848524.1| tRNA pseudouridine synthase A [Streptococcus mutans M2A]
gi|450092816|ref|ZP_21856257.1| tRNA pseudouridine synthase A [Streptococcus mutans W6]
gi|450106299|ref|ZP_21860423.1| tRNA pseudouridine synthase A [Streptococcus mutans SF14]
gi|450148064|ref|ZP_21875421.1| tRNA pseudouridine synthase A [Streptococcus mutans 14D]
gi|450164091|ref|ZP_21881128.1| tRNA pseudouridine synthase A [Streptococcus mutans B]
gi|450176989|ref|ZP_21886146.1| tRNA pseudouridine synthase A [Streptococcus mutans SM1]
gi|449162563|gb|EMB65693.1| tRNA pseudouridine synthase A [Streptococcus mutans 3SN1]
gi|449173404|gb|EMB75980.1| tRNA pseudouridine synthase A [Streptococcus mutans 2VS1]
gi|449204668|gb|EMC05455.1| tRNA pseudouridine synthase A [Streptococcus mutans NLML4]
gi|449211333|gb|EMC11738.1| tRNA pseudouridine synthase A [Streptococcus mutans M2A]
gi|449217818|gb|EMC17849.1| tRNA pseudouridine synthase A [Streptococcus mutans W6]
gi|449223405|gb|EMC23094.1| tRNA pseudouridine synthase A [Streptococcus mutans SF14]
gi|449236306|gb|EMC35229.1| tRNA pseudouridine synthase A [Streptococcus mutans 14D]
gi|449242335|gb|EMC40928.1| tRNA pseudouridine synthase A [Streptococcus mutans B]
gi|449244279|gb|EMC42660.1| tRNA pseudouridine synthase A [Streptococcus mutans SM1]
gi|449256256|gb|EMC54086.1| tRNA pseudouridine synthase A [Streptococcus mutans SF12]
gi|449261426|gb|EMC58902.1| tRNA pseudouridine synthase A [Streptococcus mutans M230]
gi|449261550|gb|EMC59022.1| tRNA pseudouridine synthase A [Streptococcus mutans R221]
Length = 249
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 115/267 (43%), Gaps = 35/267 (13%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G + G Q R M+T++ +I + L + N+ Q ++
Sbjct: 7 IISYDGTNFSGFQ----------RQPQMRTVQEEIEKTLLR--------LNSGQAVKIHG 48
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV A Q++ LP++ + E ++ P+ I ++ +++V F+++ +
Sbjct: 49 AGRTDAGVHAYGQVIHFDLPQQRDLEKLRFGLDTQTPDDIDVIQVEQVADDFHARYQKHR 108
Query: 120 RTYSYTC----PTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+TY + P T +++ F+ ++A +K+ GTH+F FT+ ++
Sbjct: 109 KTYEFLVDLGRPKNPLMRHYATHFPYKV---DFSVVKAAIKKLRGTHDFTGFTASGTSVE 165
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
R I E+ D + G F+ Q+R MVG + I G D I++
Sbjct: 166 NKV-RTISRATVEK---DDKTGFLIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPIDQIDR 221
Query: 236 TF--GLDQFDLPMAPGLGLLLEQVHYD 260
G P A GL L+++ YD
Sbjct: 222 ILESGDRSLAGPTAASNGLYLKEIIYD 248
>gi|397690186|ref|YP_006527440.1| tRNA pseudouridine synthase A [Melioribacter roseus P3M]
gi|395811678|gb|AFN74427.1| tRNA pseudouridine synthase A [Melioribacter roseus P3M]
Length = 269
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 120/269 (44%), Gaps = 49/269 (18%)
Query: 7 YSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEA---LFKAGFVTEDSFNTPQNIQFQR 63
Y+G Y G Q + + +TI+G ++EA +FK + I Q
Sbjct: 10 YAGTRYSGWQ----------KQKNGRTIQGKLIEAAEKIFKG-----------ERIDIQG 48
Query: 64 AARTDKGVSALKQIVSLK----LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
+ RTD GV AL Q+ L+ L E K +N+ LP I IL + + K F+++++ +
Sbjct: 49 SGRTDAGVHALNQVAHLEVKTMLAPEIIKMKLNDLLPADINILEVSKAGKNFHARHDAVS 108
Query: 120 RTYSYTCPTYAFATPQD----TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
R+Y Y A + KD+ F +++ + +EG H+F +F K D
Sbjct: 109 RSYIYQISRRRTAFGKQFVWWIKDEL-----DFEYMKRVGGLFEGMHDFASFADKDSE-D 162
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
S I S K+ ELI ++I G F+ +R++VGV R +++ +E
Sbjct: 163 KSTKALIESIQF-----KEVGELILIRIVGSHFLWKMVRRIVGVLAEAGRHKLNENDVES 217
Query: 236 TFGLDQFDLP----MAPGLGLLLEQVHYD 260
L+ F AP GL LE+V Y+
Sbjct: 218 Y--LNVFSREPAKYTAPPSGLFLEKVIYE 244
>gi|426251725|ref|XP_004019572.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Ovis aries]
Length = 481
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 129/325 (39%), Gaps = 84/325 (25%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K V Q
Sbjct: 65 VALKIAYLGWGYQGFASQ---------ENTSNTIEEKLFEALTKTRLV-----ENRQTSN 110
Query: 61 FQRAARTDKGVSALKQIVSL---------------KLPEEANKEA--------INEHLPE 97
+ R RTDKGVSA Q++SL L +E N A +N LP
Sbjct: 111 YHRCGRTDKGVSAFGQVISLDLRSHFPKGRDSEDFNLKDEVNDVATEIRYTHILNRVLPP 170
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSY--TCPTYAFATPQDTKDDFRLTPDQFNFLQALL 155
IR+L+ V F+++ +C RTY Y C T +
Sbjct: 171 DIRVLAWAPVETSFSARFSCLERTYRYFFPCANLDIVT-----------------MNYAA 213
Query: 156 KQYEGTHNFHNFTS----------KRKPLDPSCSRYIMSF---DCEQPFVKDGLELITLK 202
++Y GTH+F N +R L R + ++PF +L +
Sbjct: 214 QKYVGTHDFRNLCKMDVANGVTNFQRTILSAQVQRVGQNLAEEGWQEPF-----QLCQFE 268
Query: 203 IKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLY 262
+ GQ+F+ HQ+R M+ + I +G ++I++ +++ P P + +E LY
Sbjct: 269 VTGQAFLYHQVRCMMAILFLIGQGMEKPEVIDELLNIEKN--PQKPQYSMAVE-FPLVLY 325
Query: 263 NQKYGQDGMHESLHFHEVDKEVNEF 287
+ K+ E++ + D+EV EF
Sbjct: 326 DCKF------ENIKWI-YDREVQEF 343
>gi|317472004|ref|ZP_07931336.1| tRNA pseudouridine synthase A [Anaerostipes sp. 3_2_56FAA]
gi|316900408|gb|EFV22390.1| tRNA pseudouridine synthase A [Anaerostipes sp. 3_2_56FAA]
Length = 252
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 112/266 (42%), Gaps = 32/266 (12%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ + AY G Y G Q + TIEG + E L + E+ I
Sbjct: 4 IKLEVAYDGTNYCGWQIQ----------PKDTTIEGVLNEKL--GSLLGEE-------IT 44
Query: 61 FQRAARTDKGVSALKQIVSL----KLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
A+RTD GV AL + ++P E A+N+ LP+ I I S V F+ +
Sbjct: 45 VIGASRTDSGVHALGNVAVFDTETEIPGERIARALNQRLPDDIVIQSSSEVKDDFHPRYQ 104
Query: 117 CNARTYSYTCPTYAFATPQDTK-DDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+TY YT F P + F P ++ + + G H+F +F++ P
Sbjct: 105 DTRKTYEYTIYNAEFDNPVTARHHHFVYVPLDVERMRTAARCFLGEHDFLSFSTTGSPTK 164
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
+ R I ++CE V+ IT+++ G F+ + +R M G ++I RG + + +
Sbjct: 165 TTV-RTI--YECE---VRQNGRYITMRVTGNGFLYNMVRMMAGTLISIGRGRRDPEWVRE 218
Query: 236 TFGLDQFDL--PMAPGLGLLLEQVHY 259
F + P AP GL L +HY
Sbjct: 219 LFLHPKRGKAGPNAPAKGLTLINIHY 244
>gi|296111462|ref|YP_003621844.1| tRNA pseudouridine synthase A [Leuconostoc kimchii IMSNU 11154]
gi|295832994|gb|ADG40875.1| tRNA pseudouridine synthase A [Leuconostoc kimchii IMSNU 11154]
Length = 256
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 124/275 (45%), Gaps = 44/275 (16%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRN--QGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
+ +Y G G+FG Q + +N + +T++G++ +A V + + N + I+
Sbjct: 7 IVSYDGSGFFGFQVQ-------TKNGIERQRTVQGELTKA------VNQMAKNPTEPIKV 53
Query: 62 QRAARTDKGVSALKQIVSLKLPEEAN----KEAINEHLPEQIRILSIKRVTKGFNSKNNC 117
A+RTD GV A Q+V LP + N ++ +N LP + I + +VT F+++ N
Sbjct: 54 VGASRTDTGVHAFGQVVHFDLPFDINENGVRKGLNTLLPRDMLIKQVDKVTPDFHARFNT 113
Query: 118 NARTYSYTCPTYAFATP--QDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+A+ Y Y T F P + F+ D +++ L G H+F +F +
Sbjct: 114 HAKRYIYRVSTQDFTDPFKRQYTGHFQWHLD-IERIKSALPDLLGEHDFASFAASGNQTA 172
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARG--------- 226
+ + +P D EL+ +G +F+ +QIR MVGV + I G
Sbjct: 173 TTIRTITRADVTIKP---DDQELV-FTFEGNAFLYNQIRIMVGVLLEIGNGRRDVHDILR 228
Query: 227 -FTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYD 260
T KD + F AP GL L+Q++Y+
Sbjct: 229 LITVKDREQARF--------TAPASGLYLDQIYYN 255
>gi|260893342|ref|YP_003239439.1| tRNA pseudouridine synthase A [Ammonifex degensii KC4]
gi|260865483|gb|ACX52589.1| tRNA pseudouridine synthase A [Ammonifex degensii KC4]
Length = 259
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 114/285 (40%), Gaps = 52/285 (18%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G + G Q R G++T++G + EAL + T + Q
Sbjct: 6 VALKVAYDGTAFSGFQ----------RQPGLRTVQGVLEEALARL---------TKETCQ 46
Query: 61 FQRAARTDKGVSALKQIVSLK----LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ A RTD GV A Q+VS + +P A+N LP + +L+ V + F+ + +
Sbjct: 47 VKGAGRTDAGVHAEGQVVSFRTASSIPTPRLVPALNGLLPPDVAVLAAAEVPEQFHPRYD 106
Query: 117 CNARTYSYT-------CPT---YAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHN 166
++ Y YT CP YA P+ P ++ G H+F
Sbjct: 107 AVSKVYRYTFFRRAVRCPLTRFYALHVPE---------PLDVERMREAAAYLGGRHDFRA 157
Query: 167 FTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARG 226
F + +P+ S F C +++ + I+ F+ +R + G + I RG
Sbjct: 158 FQNTGRPVKSSVR---TVFSCR---LEEAGPFLYFWIEADGFLYQMVRVIAGTLLEIGRG 211
Query: 227 FTSKDLIEKTF--GLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQD 269
+I G Q P AP GL L QV Y +G+D
Sbjct: 212 KLEPSVILAALEKGERQLLGPTAPPHGLCLVQVKYP--QDPFGED 254
>gi|354495795|ref|XP_003510014.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Cricetulus
griseus]
gi|344251676|gb|EGW07780.1| tRNA pseudouridine synthase-like 1 [Cricetulus griseus]
Length = 291
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 121/277 (43%), Gaps = 32/277 (11%)
Query: 15 LQSKYLFFLIFCRN--QGMKTIEGDIMEALFKAGFVTEDS--FNTPQNIQFQRAARTDKG 70
++++YL F + G+ + G+ A+ F+ E + N+ + I+F ++RTD G
Sbjct: 10 VRARYLVFFQYLGTDFNGVAAVRGN-HRAVGVQNFLEEAATRLNSIEPIRFTISSRTDAG 68
Query: 71 VSALKQIVSLKL---------PEEANKEAINEHLPEQ-IRILSIKRVTKGFNSKNNCNAR 120
V AL L + E +A+N HL Q IR+L RV F+++ +R
Sbjct: 69 VHALSNAAHLDIHRRSGLQPYTPEVVTQALNTHLKHQAIRVLKAFRVPNDFHARRAATSR 128
Query: 121 TYSYTCPT---YAFATP---QDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
TY Y T + P Q+ + +Q + GTH+F F S P
Sbjct: 129 TYLYRLATGCHWPDQLPVFEQNVCWALQTKSLDVAAMQEAAQHLIGTHDFSAFQSAGSPA 188
Query: 175 DPSCS---RYIMSFDCEQPFV----KDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGF 227
+ R +S PF L+ TL+ + QSF+ Q+R+M V +A+ +G
Sbjct: 189 TSTVRTLRRVSVSSGPASPFALPQESRRLQFWTLEFESQSFLYRQVRRMTAVLVAVGQGI 248
Query: 228 TS----KDLIEKTFGLDQFDLPMAPGLGLLLEQVHYD 260
+ K +++ L ++ +AP GL L+ V YD
Sbjct: 249 LTPTEVKAILDSQDPLGKYQARVAPARGLFLKSVLYD 285
>gi|296471772|tpg|DAA13887.1| TPA: tRNA pseudouridine synthase 3 [Bos taurus]
Length = 481
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 86/323 (26%), Positives = 127/323 (39%), Gaps = 80/323 (24%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K V Q
Sbjct: 65 VALKIAYLGWGYQGFASQ---------ENTSNTIEEKLFEALTKTRLV-----ENRQTSN 110
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKEAINEH-----------------------LPE 97
+ R RTDKGVSA Q++SL L K +EH LP
Sbjct: 111 YHRCGRTDKGVSAFGQVISLDLRSHIPKGRDSEHFNLKNEVNDVATEIRYTHILNRVLPP 170
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IR+L+ V F+++ +C RTY Y P R D A K
Sbjct: 171 DIRVLAWAPVETSFSARFSCLERTYRYFFP--------------RANLDIVTMNYAAQK- 215
Query: 158 YEGTHNFHNFTS----------KRKPLDPSCSRYIMSFDCE---QPFVKDGLELITLKIK 204
Y GTH+F N +R L R + E +PF +L ++
Sbjct: 216 YVGTHDFRNLCKMDVANGVINFQRTILSAQVQRVGQNLGEEGWQEPF-----QLCQFEVT 270
Query: 205 GQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQ 264
GQ+F+ HQ+R M+ V I +G ++I++ +++ P P + +E LY+
Sbjct: 271 GQAFLYHQVRCMMAVLFLIGQGMEKPEVIDELLNIEKN--PQKPQYSMAVE-FPLVLYDC 327
Query: 265 KYGQDGMHESLHFHEVDKEVNEF 287
K+ E++ + D+EV EF
Sbjct: 328 KF------ENIKWI-YDREVQEF 343
>gi|118594739|ref|ZP_01552086.1| tRNA pseudouridine synthase A [Methylophilales bacterium HTCC2181]
gi|118440517|gb|EAV47144.1| tRNA pseudouridine synthase A [Methylophilales bacterium HTCC2181]
Length = 264
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 120/274 (43%), Gaps = 46/274 (16%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A +Y+G G+ G Q + +KTI+G I AL + + +D+ T
Sbjct: 3 IACSVSYNGYGFSGWQ----------KQPDVKTIQGLIESALTE---IAKDTVIT----- 44
Query: 61 FQRAARTDKGVSALKQIVSLKL----PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ RTD GV AL QI+ P A + +N LP I++ K +++ F+++++
Sbjct: 45 -HASGRTDSGVHALGQIIHFDTTKNRPLTAWVKGVNAFLPSSIKVRWAKNISESFHARHS 103
Query: 117 CNARTYSYTC--PTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSK---- 170
R Y Y T A T D +N L A K +EGTH+F +F S
Sbjct: 104 VLEREYQYLLIKDTNNSAIFHATAGWTYFDLDDYN-LMAACKCFEGTHDFSSFRSSECQA 162
Query: 171 RKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSK 230
+ P+ R I F CEQ L T++ G F+ HQIR M+ + +A+ S
Sbjct: 163 KSPV-----RTINQFRCEQ---FGNTYLFTIRANG--FLHHQIRNMIAAVIHVAKNEDSV 212
Query: 231 DLIEKTFGLDQFDLPMAPGL----GLLLEQVHYD 260
I+ L + D +AP GL L + YD
Sbjct: 213 GFIDDL--LSKKDRTLAPPTFMPNGLYLSNIKYD 244
>gi|221486308|gb|EEE24569.1| pseudouridylate synthase, putative [Toxoplasma gondii GT1]
Length = 901
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 89/175 (50%), Gaps = 9/175 (5%)
Query: 151 LQALLKQYEGTHNFHNFTSKRKPLDPSCS---RYIMSFDCEQPFVKDGL--ELITLKIKG 205
L+A+ K +EGTH F NFT + K D S + R+I Q + DG+ +++ ++++G
Sbjct: 706 LRAVFKVFEGTHAFQNFTKRGKHKDSSPAAFKRHIHRTAVSQAHL-DGVSDDVVVIELEG 764
Query: 206 QSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFD--LPMAPGLGLLLEQVHYDLYN 263
QSF+ +QIRKMVG+A+ + RG + + ++ + + AP GLLL YD YN
Sbjct: 765 QSFLFNQIRKMVGIAVEVCRGTATVTSLTDALRPNRQNVFIHTAPAEGLLLLSPVYDTYN 824
Query: 264 QKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF 318
+ ++ + +E+ F+ I P + + + W+E + H F
Sbjct: 825 RTRAAPPELPAVEVESIQEEILSFQRSAIFPRIAHS-FSTTVWNDWIENINWHPF 878
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 32 KTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKL 82
+T+EG + EAL +G + Q +Q+ RAARTD+GV A +VSLKL
Sbjct: 281 RTVEGVLEEALLASGGIAPCCLGCLQKLQWSRAARTDRGVHAACNVVSLKL 331
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 91 INEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFR 142
+N LP IR +++RVTK F+++ +C+ R Y++ P + P + D R
Sbjct: 449 LNAALPPDIRCFAVRRVTKNFDARVSCSRRRYAFLLPAW-LLQPIAVRRDVR 499
>gi|449881743|ref|ZP_21784619.1| tRNA pseudouridine synthase A [Streptococcus mutans SA38]
gi|449926715|ref|ZP_21800914.1| tRNA pseudouridine synthase A [Streptococcus mutans 4SM1]
gi|449960287|ref|ZP_21810574.1| tRNA pseudouridine synthase A [Streptococcus mutans 4VF1]
gi|449963897|ref|ZP_21811048.1| tRNA pseudouridine synthase A [Streptococcus mutans 15VF2]
gi|449975279|ref|ZP_21815725.1| tRNA pseudouridine synthase A [Streptococcus mutans 11VS1]
gi|450138245|ref|ZP_21872075.1| tRNA pseudouridine synthase A [Streptococcus mutans NLML1]
gi|449160441|gb|EMB63709.1| tRNA pseudouridine synthase A [Streptococcus mutans 4SM1]
gi|449167745|gb|EMB70609.1| tRNA pseudouridine synthase A [Streptococcus mutans 4VF1]
gi|449173007|gb|EMB75603.1| tRNA pseudouridine synthase A [Streptococcus mutans 15VF2]
gi|449177142|gb|EMB79456.1| tRNA pseudouridine synthase A [Streptococcus mutans 11VS1]
gi|449234218|gb|EMC33238.1| tRNA pseudouridine synthase A [Streptococcus mutans NLML1]
gi|449250917|gb|EMC48955.1| tRNA pseudouridine synthase A [Streptococcus mutans SA38]
Length = 249
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 115/267 (43%), Gaps = 35/267 (13%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G + G Q R M+T++ +I + L + N+ Q ++
Sbjct: 7 IISYDGTNFSGFQ----------RQPQMRTVQEEIEKTLLR--------LNSGQAVKIHG 48
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV A Q++ LP++ + E ++ P+ I ++ +++V F+++ +
Sbjct: 49 AGRTDAGVHAYGQVIHFDLPQQRDLEKLRFGLDTQTPDDIDVIQVEQVADDFHARYQKHR 108
Query: 120 RTYSYTC----PTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+TY + P T +++ F+ ++A +K+ GTH+F FT+ ++
Sbjct: 109 KTYEFLVDLGRPKNPLMRHYATHFPYKV---DFSVVKAAIKKLRGTHDFTGFTAAGTSVE 165
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
R I E+ D + G F+ Q+R MVG + I G D I++
Sbjct: 166 NKV-RTISRATVEK---DDKTGFLIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPIDQIDR 221
Query: 236 TF--GLDQFDLPMAPGLGLLLEQVHYD 260
G P A GL L+++ YD
Sbjct: 222 ILESGDRSLAGPTAASNGLYLKEIIYD 248
>gi|440894412|gb|ELR46876.1| tRNA pseudouridine synthase 3 [Bos grunniens mutus]
Length = 481
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 87/323 (26%), Positives = 128/323 (39%), Gaps = 80/323 (24%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K V Q
Sbjct: 65 VALKIAYLGWGYQGFASQ---------ENTSNTIEEKLFEALTKTRLV-----ENRQTSN 110
Query: 61 FQRAARTDKGVSALKQIVSL---------------KLPEEANKEA--------INEHLPE 97
+ R RTDKGVSA Q++SL L E N A +N LP
Sbjct: 111 YHRCGRTDKGVSAFGQVISLDLRSHIPKGRDSEHFNLKNEVNDVATEIRYTHILNRVLPP 170
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IR+L+ V F+++ +C RTY Y P R D A K
Sbjct: 171 DIRVLAWAPVETSFSARFSCLERTYRYFFP--------------RANLDIVTMNYAAQK- 215
Query: 158 YEGTHNFHNFTS----------KRKPLDPSCSRYIMSFDCE---QPFVKDGLELITLKIK 204
Y GTH+F N +R L R + E +PF +L ++
Sbjct: 216 YVGTHDFRNLCKMDVANGVINFQRTILSAQVQRVGQNLGEEGWQEPF-----QLCQFEVT 270
Query: 205 GQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQ 264
GQ+F+ HQ+R M+ V I +G ++I++ +++ P P + +E LY+
Sbjct: 271 GQAFLYHQVRCMMAVLFLIGQGMEKPEVIDELLNIEKN--PQKPQYSMAVE-FPLVLYDC 327
Query: 265 KYGQDGMHESLHFHEVDKEVNEF 287
K+ E++ + D+EV EF
Sbjct: 328 KF------ENIKWI-YDREVQEF 343
>gi|284161452|ref|YP_003400075.1| tRNA pseudouridine synthase A [Archaeoglobus profundus DSM 5631]
gi|284011449|gb|ADB57402.1| tRNA pseudouridine synthase A [Archaeoglobus profundus DSM 5631]
Length = 262
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 111/265 (41%), Gaps = 47/265 (17%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A AY G + G Q + ++T+ G++ +A G P+ +
Sbjct: 3 IAYKLAYVGTNFHGFQYQ----------PNVRTVAGELFKAFRALGI-------DPKKAK 45
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNAR 120
F+ A RTD GV A Q++++ + + N HLPE + + V + FN + + +R
Sbjct: 46 FRCAGRTDAGVHAFGQVIAINVEKPIFPRMFNAHLPEDVTFWAWTEVDEKFNPR-HAKSR 104
Query: 121 TYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSK---RKPLDPS 177
TY Y P + + ++ K GTH+F NFT K R+
Sbjct: 105 TYVYVMPAEGY---------------DISAMRKASKLLLGTHDFSNFTKKFGERR----R 145
Query: 178 CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTF 237
C R I + + + DG + L+I G +F + +R +V + G S + E
Sbjct: 146 CIRTIYNVELR---LDDG--FVVLEIVGNAFTWNMVRCIVSALREVGSGHRSVEWFEDML 200
Query: 238 GLDQF--DLPMAPGLGLLLEQVHYD 260
++ + AP GL+L+ V Y+
Sbjct: 201 NPERHRERIEPAPAYGLILKDVEYE 225
>gi|221508095|gb|EEE33682.1| pseudouridylate synthase, putative [Toxoplasma gondii VEG]
Length = 904
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 89/175 (50%), Gaps = 9/175 (5%)
Query: 151 LQALLKQYEGTHNFHNFTSKRKPLDPSCS---RYIMSFDCEQPFVKDGL--ELITLKIKG 205
L+A+ K +EGTH F NFT + K D S + R+I Q + DG+ +++ ++++G
Sbjct: 709 LRAVFKVFEGTHAFQNFTKRGKHKDSSPAAFKRHIHRTAVSQAHL-DGVSDDVVVIELEG 767
Query: 206 QSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFD--LPMAPGLGLLLEQVHYDLYN 263
QSF+ +QIRKMVG+A+ + RG + + ++ + + AP GLLL YD YN
Sbjct: 768 QSFLFNQIRKMVGIAVEVCRGTATVTSLTDALRPNRQNVFIHTAPAEGLLLLSPVYDTYN 827
Query: 264 QKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF 318
+ ++ + +E+ F+ I P + + + W+E + H F
Sbjct: 828 RTRAAPPELPAVEVESIQEEILSFQRSAIFPRIAHS-FSTTVWNDWIENINWHPF 881
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 32 KTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKL 82
+T+EG + EAL +G + Q +Q+ RAARTD+GV A +VSLKL
Sbjct: 281 RTVEGVLEEALLASGGIAPYCLGCLQKLQWSRAARTDRGVHAACNVVSLKL 331
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 91 INEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFR 142
+N LP IR +++RVTK F+++ +C+ R Y++ P + P + D R
Sbjct: 452 LNAALPPDIRCFAVRRVTKNFDARVSCSRRRYAFLLPAW-LLQPIAVRRDVR 502
>gi|77735971|ref|NP_001029684.1| tRNA pseudouridine(38/39) synthase [Bos taurus]
gi|119391067|sp|Q3SX07.1|PUS3_BOVIN RecName: Full=tRNA pseudouridine(38/39) synthase; AltName:
Full=tRNA pseudouridine synthase 3; AltName: Full=tRNA
pseudouridylate synthase 3; AltName: Full=tRNA-uridine
isomerase 3
gi|74356305|gb|AAI04570.1| Pseudouridylate synthase 3 [Bos taurus]
Length = 481
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 86/323 (26%), Positives = 127/323 (39%), Gaps = 80/323 (24%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K V Q
Sbjct: 65 VALKIAYLGWGYQGFASQ---------ENTSNTIEEKLFEALTKTRLV-----ENRQTSN 110
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKEAINEH-----------------------LPE 97
+ R RTDKGVSA Q++SL L K +EH LP
Sbjct: 111 YHRCGRTDKGVSAFGQVISLDLRSHIPKGRDSEHFNLKNEVNDVATEIRYTHILNRVLPP 170
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IR+L+ V F+++ +C RTY Y P R D A K
Sbjct: 171 DIRVLAWAPVETSFSARFSCLERTYRYFFP--------------RANLDIVTMNYAAQK- 215
Query: 158 YEGTHNFHNFTS----------KRKPLDPSCSRYIMSFDCE---QPFVKDGLELITLKIK 204
Y GTH+F N +R L R + E +PF +L ++
Sbjct: 216 YVGTHDFRNLCKMDVANGVINFQRTILSAQVQRVGQNLGEEGWQEPF-----QLCQFEVT 270
Query: 205 GQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQ 264
GQ+F+ HQ+R M+ V I +G ++I++ +++ P P + +E LY+
Sbjct: 271 GQAFLYHQVRCMMAVLFLIGQGMEKPEVIDELLNIEKN--PQKPQYSMAVE-FPLVLYDC 327
Query: 265 KYGQDGMHESLHFHEVDKEVNEF 287
K+ E++ + D+EV EF
Sbjct: 328 KF------ENIKWI-YDREVQEF 343
>gi|237833615|ref|XP_002366105.1| hypothetical protein TGME49_024200 [Toxoplasma gondii ME49]
gi|211963769|gb|EEA98964.1| hypothetical protein TGME49_024200 [Toxoplasma gondii ME49]
Length = 904
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 89/175 (50%), Gaps = 9/175 (5%)
Query: 151 LQALLKQYEGTHNFHNFTSKRKPLDPSCS---RYIMSFDCEQPFVKDGL--ELITLKIKG 205
L+A+ K +EGTH F NFT + K D S + R+I Q + DG+ +++ ++++G
Sbjct: 709 LRAVFKVFEGTHAFQNFTKRGKHKDSSPAAFKRHIHRTAVSQAHL-DGVSDDVVVIELEG 767
Query: 206 QSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFD--LPMAPGLGLLLEQVHYDLYN 263
QSF+ +QIRKMVG+A+ + RG + + ++ + + AP GLLL YD YN
Sbjct: 768 QSFLFNQIRKMVGIAVEVCRGTATVTSLTDALRPNRQNVFIHTAPAEGLLLLSPVYDTYN 827
Query: 264 QKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF 318
+ ++ + +E+ F+ I P + + + W+E + H F
Sbjct: 828 RTRAAPPELPAVEVESIQEEILSFQRSAIFPRIAHS-FSTTVWNDWIENINWHPF 881
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 32 KTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKL 82
+T+EG + EAL +G + Q +Q+ RAARTD+GV A +VSLKL
Sbjct: 281 RTVEGVLEEALLASGGIAPCCLGCLQKLQWSRAARTDRGVHAACNVVSLKL 331
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 91 INEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFR 142
+N LP IR +++RVTK F+++ +C+ R Y++ P + P + D R
Sbjct: 452 LNAALPPDIRCFAVRRVTKNFDARVSCSRRRYAFLLPAW-LLQPIAVRRDVR 502
>gi|355714592|gb|AES05053.1| pseudouridylate synthase 3 [Mustela putorius furo]
Length = 479
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 86/323 (26%), Positives = 130/323 (40%), Gaps = 80/323 (24%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K V + Q
Sbjct: 64 VALKIAYLGWGYQGFASQ---------ENTNNTIEEKLFEALTKTRLV-----ESRQTSN 109
Query: 61 FQRAARTDKGVSALKQIVSLKLPE------------------EANKEA-----INEHLPE 97
+ R RTDKGVSA Q++SL L +A KE +N LP
Sbjct: 110 YHRCGRTDKGVSAFGQVISLDLRSHFLKGRASEDCNVKDDVYDAAKEIRYTHILNRVLPP 169
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IR+L+ V F+++ +C RTY Y P R D A K
Sbjct: 170 DIRVLAWAPVEPSFSARFSCLERTYRYFFP--------------RADLDILTMNHAAQK- 214
Query: 158 YEGTHNFHNFTS----------KRKPLDPSCSRYIMSFDCE---QPFVKDGLELITLKIK 204
Y GTH+F N +R L + D E +PF +L ++
Sbjct: 215 YVGTHDFRNLCKMDVANGVINFQRTILSAQVQLVGQTLDEETWQEPF-----QLCQFEVI 269
Query: 205 GQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQ 264
GQ+F+ HQ+R M+ + I +G ++I++ +++ P P + +E LY+
Sbjct: 270 GQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNVEKN--PQKPQYSMAVE-FPLVLYDC 326
Query: 265 KYGQDGMHESLHFHEVDKEVNEF 287
K+ E++ + D+EV EF
Sbjct: 327 KF------ENIKWI-YDREVQEF 342
>gi|450143500|ref|ZP_21873480.1| tRNA pseudouridine synthase A [Streptococcus mutans 1ID3]
gi|449152121|gb|EMB55836.1| tRNA pseudouridine synthase A [Streptococcus mutans 1ID3]
Length = 249
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 116/267 (43%), Gaps = 35/267 (13%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G + G Q R M+T++ +I + L + N+ Q ++
Sbjct: 7 IISYDGTNFSGFQ----------RQPQMRTVQEEIEKTLLR--------LNSGQAVKIYG 48
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV A Q++ LP++ + E ++ P+ I ++ +++V F+++ + +
Sbjct: 49 AGRTDAGVHAYGQVIHFDLPQQRDLEKLRFGLDTQTPDDIDVIQVEQVADDFHARYHKHR 108
Query: 120 RTYSYTC----PTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+TY + P T +++ F+ ++A +K+ GTH+F FT+ ++
Sbjct: 109 KTYEFLVDLGRPKNPLMRHYATHFPYKV---DFSVVKAAIKKLRGTHDFTGFTASGTSVE 165
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
R I E+ D + G F+ Q+R MVG + I G D I++
Sbjct: 166 NKV-RTISRATVEK---DDKTGFLIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPIDQIDR 221
Query: 236 TF--GLDQFDLPMAPGLGLLLEQVHYD 260
G P A GL L+++ YD
Sbjct: 222 ILESGDRSLAGPTAASNGLYLKEIIYD 248
>gi|403215491|emb|CCK69990.1| hypothetical protein KNAG_0D02400 [Kazachstania naganishii CBS
8797]
Length = 418
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 107/262 (40%), Gaps = 55/262 (20%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ FAY G Y GL + + T+E I+E + K V P +
Sbjct: 98 IALRFAYLGWKYNGLALQK-------EPTALPTVEETILEVMNKCKLVPS---MEPLDYN 147
Query: 61 FQRAARTDKGVSALKQIVSLKL-----PEEANKEA-----------INEHLPEQIRILSI 104
F R RTDKGVSA+ Q++SL + PEE A IN LP+ IR+ ++
Sbjct: 148 FSRCGRTDKGVSAMNQVISLTVRSNLSPEEQRDPANDHQELQYVHMINHLLPDDIRVSAV 207
Query: 105 K-RVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHN 163
R F+++++C R Y Y F+ ++ K YEG H+
Sbjct: 208 CLRPPADFDARHSCKHRHYRYL---------------FKAEQLDLEKMREAAKLYEGEHD 252
Query: 164 FHNFTSKRKPLDPS-----CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVG 218
F NF +D S R I+S D ++ + + G +F+ HQ+R M+
Sbjct: 253 FRNFCK----IDGSKQITNYRRRIISGD----IIRVNEDFYCFDLVGTAFLWHQVRCMMA 304
Query: 219 VAMAIARGFTSKDLIEKTFGLD 240
+ +G ++ +D
Sbjct: 305 CLFLVGQGLEKPSIVTDLMNID 326
>gi|450035792|ref|ZP_21835197.1| tRNA pseudouridine synthase A [Streptococcus mutans M21]
gi|450111953|ref|ZP_21862949.1| tRNA pseudouridine synthase A [Streptococcus mutans SM6]
gi|449195007|gb|EMB96344.1| tRNA pseudouridine synthase A [Streptococcus mutans M21]
gi|449223157|gb|EMC22861.1| tRNA pseudouridine synthase A [Streptococcus mutans SM6]
Length = 249
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 116/268 (43%), Gaps = 37/268 (13%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G + G Q R M+T++ +I + L + N+ Q ++
Sbjct: 7 IISYDGTNFSGFQ----------RQPQMRTVQEEIEKTLLR--------LNSGQAVKVHG 48
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV A Q++ LP++ + E ++ P+ I ++ +++V F+++ +
Sbjct: 49 AGRTDAGVHAYGQVIHFDLPQQRDLEKLRFGLDTQTPDDIDVIQVEQVADDFHARYQKHR 108
Query: 120 RTYSYTC----PTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+TY + P T +++ F+ ++A +K+ GTH+F FT+ ++
Sbjct: 109 KTYEFLVDLGRPKNPLMRHYATHFPYKV---DFSVVKAAIKKLRGTHDFTGFTASGTSVE 165
Query: 176 PSCSRYIMSFDCEQPFVKDG-LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
R I E KDG + G F+ Q+R MVG + I G D I+
Sbjct: 166 NKV-RTISRATVE----KDGKTGFLIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPIDQID 220
Query: 235 KTF--GLDQFDLPMAPGLGLLLEQVHYD 260
+ G P A GL L+++ YD
Sbjct: 221 RILESGDRSLAGPTAASNGLYLKEIIYD 248
>gi|339640162|ref|ZP_08661606.1| tRNA pseudouridine synthase A [Streptococcus sp. oral taxon 056
str. F0418]
gi|339453431|gb|EGP66046.1| tRNA pseudouridine synthase A [Streptococcus sp. oral taxon 056
str. F0418]
Length = 249
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 117/270 (43%), Gaps = 41/270 (15%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G G+ G Q R ++++ +I + L + N Q +
Sbjct: 7 IISYDGYGFAGFQ----------RQPHARSVQEEIEKTLTR--------INKGQTVVIHG 48
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV AL QI+ LP E + E A++ P I +S++RV + F+++ N ++
Sbjct: 49 AGRTDSGVHALGQILHFDLPGERDAEKLRFALDTQTPADIDFISVERVAEDFHARYNKHS 108
Query: 120 RTYSYTCPTYAFATPQDTKDDFRLT----PDQFNFLQALLKQYEGTHNFHNFT-SKRKPL 174
+TY + P++ T P + ++ + Q EGTH+F FT S +
Sbjct: 109 KTYEFLVD---IGRPKNPMMRHYATHYPYPLELELIEEAIVQLEGTHDFTGFTASGTSVV 165
Query: 175 DP--SCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDL 232
D + + + +D E+ F + G F+ QIR MVG + I +
Sbjct: 166 DKVRTITEAKVRYDAERNF-------LVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQ 218
Query: 233 IEKTFGLDQFDL--PMAPGLGLLLEQVHYD 260
I++ +L P A GL L+++ Y+
Sbjct: 219 IQRILDEKNRNLAGPTADPNGLYLKEIRYE 248
>gi|450131349|ref|ZP_21869440.1| tRNA pseudouridine synthase A [Streptococcus mutans NLML8]
gi|449153944|gb|EMB57571.1| tRNA pseudouridine synthase A [Streptococcus mutans NLML8]
Length = 249
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 115/267 (43%), Gaps = 35/267 (13%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G + G Q R M+T++ +I + L + N+ Q ++
Sbjct: 7 IISYDGTNFSGFQ----------RQPQMRTVQEEIEKTLLR--------LNSGQAVKIHG 48
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV A Q++ LP++ + E ++ P+ I ++ +++V F+++ +
Sbjct: 49 AGRTDAGVHAYGQVIHFDLPQQRDLEKLRFGLDTQTPDDIDVIQVEQVADNFHARYQKHR 108
Query: 120 RTYSYTC----PTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+TY + P T +++ F+ ++A +K+ GTH+F FT+ ++
Sbjct: 109 KTYEFLVDLGRPKNPLMRHYATHFPYKV---DFSVVKAAIKKLRGTHDFTGFTASGISVE 165
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
R I E+ D + G F+ Q+R MVG + I G D I++
Sbjct: 166 NKV-RTISRATVEK---DDKTGFLIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPIDQIDR 221
Query: 236 TF--GLDQFDLPMAPGLGLLLEQVHYD 260
G P A GL L+++ YD
Sbjct: 222 ILESGDRSLAGPTAASNGLYLKEIIYD 248
>gi|167748465|ref|ZP_02420592.1| hypothetical protein ANACAC_03209 [Anaerostipes caccae DSM 14662]
gi|167652457|gb|EDR96586.1| tRNA pseudouridine synthase A [Anaerostipes caccae DSM 14662]
Length = 252
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 112/266 (42%), Gaps = 32/266 (12%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ + AY G Y G Q + TIEG + E L + E+ I
Sbjct: 4 IKLEVAYDGTNYCGWQIQ----------PKDTTIEGILNEKL--GSLLGEE-------IT 44
Query: 61 FQRAARTDKGVSALKQIVSL----KLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
A+RTD GV AL + ++P E A+N+ LP+ I I S V F+ +
Sbjct: 45 VIGASRTDSGVHALGNVAVFDTETEIPGERIARALNQRLPDDIVIQSSSEVKDDFHPRYQ 104
Query: 117 CNARTYSYTCPTYAFATPQDTK-DDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+TY YT F P + F P ++ + + G H+F +F++ P
Sbjct: 105 DTRKTYEYTIYNAEFDNPVTARHHHFVYVPLDAERMRTAARCFLGEHDFLSFSTTGSPTK 164
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
+ R I ++CE V+ IT+++ G F+ + +R M G ++I RG + + +
Sbjct: 165 TTV-RTI--YECE---VRQNGRYITMRVTGNGFLYNMVRMMAGTLISIGRGRKDPEWVRE 218
Query: 236 TFGLDQFDL--PMAPGLGLLLEQVHY 259
F + P AP GL L +HY
Sbjct: 219 LFLHPKRGKAGPNAPAKGLTLINIHY 244
>gi|450120607|ref|ZP_21865803.1| tRNA pseudouridine synthase A [Streptococcus mutans ST6]
gi|449230100|gb|EMC29379.1| tRNA pseudouridine synthase A [Streptococcus mutans ST6]
Length = 249
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 115/267 (43%), Gaps = 35/267 (13%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G + G Q R M+T++ +I + L + N+ Q ++
Sbjct: 7 IISYDGTNFSGFQ----------RQPQMRTVQEEIEKTLLR--------LNSGQAVKVHG 48
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV A Q++ LP++ + E ++ P+ I ++ +++V F+++ +
Sbjct: 49 AGRTDAGVHAYGQVIHFDLPQQRDLEKLRFGLDTQTPDDIDVIQVEQVADDFHARYQKHR 108
Query: 120 RTYSYTC----PTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+TY + P T +++ F+ ++A +K+ GTH+F FT+ ++
Sbjct: 109 KTYEFLVDLGRPKNPLMRHYATHFPYKV---DFSVVKAAIKKLRGTHDFTGFTAAGTSVE 165
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
R I E+ D + G F+ Q+R MVG + I G D I++
Sbjct: 166 NKV-RTISRATVEK---DDKTGFLIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPIDQIDR 221
Query: 236 TF--GLDQFDLPMAPGLGLLLEQVHYD 260
G P A GL L+++ YD
Sbjct: 222 ILESGDRSLAGPTAASNGLYLKEIIYD 248
>gi|241896974|ref|NP_001028662.1| tRNA pseudouridine synthase-like 1 [Mus musculus]
gi|218525914|sp|A2ADA5.1|PUSL1_MOUSE RecName: Full=tRNA pseudouridine synthase-like 1; AltName:
Full=tRNA pseudouridylate synthase-like 1; AltName:
Full=tRNA-uridine isomerase-like 1
Length = 291
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 124/278 (44%), Gaps = 34/278 (12%)
Query: 15 LQSKYLFFLIFCRN--QGMKTIEGDIMEALFKAGFVTEDS--FNTPQNIQFQRAARTDKG 70
++++YL FL + G+ + G+ A+ F+ E + N+ ++F ++RTD G
Sbjct: 10 VRARYLVFLQYLGTDFNGVAAVRGN-PRAVGVLNFLEEAAKRLNSVDPVRFTISSRTDAG 68
Query: 71 VSALKQIVSLKL----------PEEANKEAINEHLPE-QIRILSIKRVTKGFNSKNNCNA 119
V AL L + PE K A+N HL IR+L RV F++++ +
Sbjct: 69 VHALSNAAHLDIQRRPGQSPFSPEVVAK-ALNTHLKHPAIRVLKAFRVPNDFHARHAATS 127
Query: 120 RTYSYTCPTYAFATPQ----DTKDDFRLTPDQFNF--LQALLKQYEGTHNFHNFTSKRKP 173
RTY Y T Q + + L + + +Q + GTH+F F S P
Sbjct: 128 RTYQYRLATGCSWPNQLPVFEQNVCWALQTEYLDMAAMQEAAQHLLGTHDFSAFQSAGSP 187
Query: 174 LDPSCS---RYIMSFDCEQPFV----KDGLELITLKIKGQSFMLHQIRKMVGVAMAIARG 226
+ + R +S PFV L+ TL+ + QSF+ Q+R+M V +A+ G
Sbjct: 188 VTNTVRTLRRVSVSPGPASPFVLPEGSRRLQFWTLEFESQSFLYRQVRRMTAVLVAVGLG 247
Query: 227 FTS----KDLIEKTFGLDQFDLPMAPGLGLLLEQVHYD 260
+ K ++E L ++ +AP GL L+ V YD
Sbjct: 248 ILAPTQVKVILESQDPLGKYQARVAPARGLFLKSVLYD 285
>gi|450061243|ref|ZP_21843700.1| tRNA pseudouridine synthase A [Streptococcus mutans NLML5]
gi|450083279|ref|ZP_21852829.1| tRNA pseudouridine synthase A [Streptococcus mutans N66]
gi|449207584|gb|EMC08255.1| tRNA pseudouridine synthase A [Streptococcus mutans NLML5]
gi|449213535|gb|EMC13867.1| tRNA pseudouridine synthase A [Streptococcus mutans N66]
Length = 249
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 115/267 (43%), Gaps = 35/267 (13%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G + G Q R M+T++ +I + L + N+ Q ++
Sbjct: 7 IISYDGTNFSGFQ----------RQPQMRTVQEEIEKTLLR--------LNSGQAVKIHG 48
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV A Q++ LP++ + E ++ P+ I ++ +++V F+++ +
Sbjct: 49 AGRTDAGVHAYGQVIHFDLPQQRDLEKLRFGLDTQTPDDIDVIQVEQVADDFHARYQKHR 108
Query: 120 RTYSYTC----PTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+TY + P T +++ F+ ++A +K+ GTH+F FT+ ++
Sbjct: 109 KTYEFLVDLGRPKNPLMRHYATHFPYKV---DFSVVKAAIKKLRGTHDFTGFTAAGTSVE 165
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
R I E+ D + G F+ Q+R MVG + I G D I++
Sbjct: 166 NKI-RTISRATVEK---DDKTGFLIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPIDQIDR 221
Query: 236 TF--GLDQFDLPMAPGLGLLLEQVHYD 260
G P A GL L+++ YD
Sbjct: 222 ILESGDRSLAGPTAASNGLYLKEIIYD 248
>gi|320591696|gb|EFX04135.1| pseudouridylate synthase 3 [Grosmannia clavigera kw1407]
Length = 522
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 79/321 (24%), Positives = 137/321 (42%), Gaps = 66/321 (20%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNI- 59
+A+ AY G Y G + + + + TIE ++ +AL KA V + +
Sbjct: 60 IALKLAYLGKRYGGFE--------YQPSGALPTIEEELWKALTKACLVFPAPGASADEVD 111
Query: 60 ----QFQRAARTDKGVSALKQIVSLKLPEEANKEAI-----NEHLPEQIRILSIKRVTKG 110
++ + RTD+GVSA Q+V+L++ +NK A+ N LP IR+L+
Sbjct: 112 LVRCEYSKCGRTDRGVSAFGQVVALRV--RSNKRAVYAKVLNRLLPPDIRVLAWCATPPA 169
Query: 111 -FNSKNNCNARTYSY--TCPTY-----AFATPQDTKDDFRLTPDQFNFLQAL---LKQYE 159
F+++ +C R Y Y T P Y + P + PD + + A+ ++
Sbjct: 170 DFSARFSCRERQYRYFFTQPAYFTEDGSRPGPTSSAGSASQPPDGWLDIDAMRDAATRFV 229
Query: 160 GTHNFHNFTSKRKPLDPSCSRYIMSFD--------CEQPFVKDGLELI------------ 199
G H+F NF +DPS + I +F+ E V L +
Sbjct: 230 GLHDFRNFCK----VDPS--KQITNFERRIFAAGITEVADVHSSLRCLSSSASSVSFPRV 283
Query: 200 -TLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGL----DQFDLPMAPGLGLLL 254
+ ++G +F+ HQIR MV V + +G D++ + G+ + + PMA L+L
Sbjct: 284 YSFDVRGSAFLWHQIRHMVAVLFLVGQGREPADVVSQLLGVAAQPGRPNYPMADETPLVL 343
Query: 255 EQVHYDLYNQKYGQDGMHESL 275
+D G G+ +S+
Sbjct: 344 ----WDCIFPPLGLPGVDDSV 360
>gi|323452423|gb|EGB08297.1| hypothetical protein AURANDRAFT_11850, partial [Aureococcus
anophagefferens]
Length = 266
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 109/255 (42%), Gaps = 34/255 (13%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ +Y G Y G + + G+ T+E + AL K V + ++
Sbjct: 19 IALWISYEGGAYSGFAEQNI------PGAGVDTVERQLFAALKKTCLV-----ESRESCG 67
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK-------EAINEHLPEQIRILSIKRVTKGFNS 113
+ R RTDKGVSAL Q+V L++ A +N LP+ +R L+ + V F++
Sbjct: 68 YSRCGRTDKGVSALGQVVGLRVRSAARAGEPLDYVNMLNRVLPDDVRALAWRPVVPEFSA 127
Query: 114 KNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKP 173
+ +C +RTY Y P AT +T + + P L+ G H+F NF
Sbjct: 128 RFSCASRTYRYFFP----ATSPNTGAAYDV-PAMAAAAARLV----GDHDFRNFCKMDVL 178
Query: 174 LDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLI 233
+ R + + D + DG +I GQ+F+ H +R +V V + G ++
Sbjct: 179 HVKNFRRVVYAADVRK--TGDGF---FFEIHGQAFLWHMVRSLVAVLFLVGEGLEPPAVV 233
Query: 234 EKTFGLDQFDLPMAP 248
+ LD P P
Sbjct: 234 DAL--LDVARTPRKP 246
>gi|448376223|ref|ZP_21559507.1| tRNA pseudouridine synthase A [Halovivax asiaticus JCM 14624]
gi|445658241|gb|ELZ11064.1| tRNA pseudouridine synthase A [Halovivax asiaticus JCM 14624]
Length = 300
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 125/315 (39%), Gaps = 60/315 (19%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFN------- 54
A AY G YFG Q R + TIE +ALF A D++
Sbjct: 3 AYRLAYDGRDYFGFQ----------RQPDVATIE----DALFDA-LRALDAYRPAAASTS 47
Query: 55 ---------TPQNIQ-FQRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSI 104
P Q + A RTD GVSAL Q V+ PE A+N LP +IR +
Sbjct: 48 ASDSQSAGPVPDRPQGYAAAGRTDAGVSALAQTVAFDAPEWLTPRALNAELPAEIRAWAS 107
Query: 105 KRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFR---LTPDQFNFLQAL----LKQ 157
V F++ ++ ARTY+Y + +A P+ D R D+ AL L
Sbjct: 108 ADVPDSFHATHDATARTYTY----HLYAPPESRNDRRRGRLAAADERRVDDALFHEALDG 163
Query: 158 YEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMV 217
G +++HN T P D R +S ++ G +++T+ ++ F +R++V
Sbjct: 164 LSGHNDYHNLT----PDDEGTER-TLSLAADR-----GGDVLTVTVQAGGFARQLVRRLV 213
Query: 218 GVAMAIARGFTSKDLIEKTFGLDQF----DLPMAPGLGLLLEQVHYDLYNQKYGQDGMHE 273
+ + G + I++ + +P AP L+L V Y +
Sbjct: 214 TLLHRVGTGEAPLEKIDRVLAAESLPGHGGIPPAPPEPLVLADVTYPDTEFAVDDEAATS 273
Query: 274 SLHFHE---VDKEVN 285
+ H E +D+EV
Sbjct: 274 ARHVFEQRRIDREVG 288
>gi|149716663|ref|XP_001505142.1| PREDICTED: tRNA pseudouridine synthase 3 [Equus caballus]
Length = 479
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 131/320 (40%), Gaps = 74/320 (23%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K V + Q
Sbjct: 63 VALRIAYLGWGYQGFASQ---------ENTNNTIEEKLFEALTKTRLV-----ESRQTSN 108
Query: 61 FQRAARTDKGVSALKQIVSL---------------KLPEEANKEA--------INEHLPE 97
+ R RTDKGVSA Q++SL L +E N A +N LP
Sbjct: 109 YHRCGRTDKGVSAFGQVISLDLRSHFPNGRDSEDFNLKDEVNDAAKEIRYTHILNRVLPP 168
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IR+L+ V F+++ +C RTY Y P + D + + + ++
Sbjct: 169 DIRVLAWAPVEPSFSARFSCLERTYRYFFP----------RADLDIIT-----MNSAAQK 213
Query: 158 YEGTHNFHNFTS----------KRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQS 207
Y GTH+F N +R L S E+ ++ +L ++ GQ+
Sbjct: 214 YVGTHDFRNLCKMDVANGVINFQRTILSAQVQLVGQSLAEERG--QEPFQLCQFEVIGQA 271
Query: 208 FMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYG 267
F+ HQ+R M+ + I +G ++I++ + + P P + +E LY+ K+
Sbjct: 272 FLYHQVRCMMAILFLIGQGMEKPEVIDELLNIQKN--PQKPQYSMAVE-FPLVLYDCKF- 327
Query: 268 QDGMHESLHFHEVDKEVNEF 287
E++ + D+EV EF
Sbjct: 328 -----ENIKWI-YDREVQEF 341
>gi|410076082|ref|XP_003955623.1| hypothetical protein KAFR_0B01890 [Kazachstania africana CBS 2517]
gi|372462206|emb|CCF56488.1| hypothetical protein KAFR_0B01890 [Kazachstania africana CBS 2517]
Length = 436
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 82/338 (24%), Positives = 132/338 (39%), Gaps = 83/338 (24%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ FAY G Y GL I + T+EG I+EA+ K + PQ
Sbjct: 88 IALKFAYLGWNYNGLA-------IQKEVTKLPTVEGTILEAMNKCKLIPS---MVPQEYN 137
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKE----------------AINEHLPEQIRILSI 104
F R RTDKGVSA+ Q++SL++ +E +N+ LP IR+ ++
Sbjct: 138 FSRCGRTDKGVSAMNQVISLRVRSNLTEEEQMDPQNDVREIQYVTILNQLLPADIRVFAV 197
Query: 105 K-RVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHN 163
R GF+++ +C AR Y Y F + ++ K +EG H+
Sbjct: 198 SLRPPPGFDARFSCKARHYKYI---------------FHNSGLNLTKMEEAAKFFEGEHD 242
Query: 164 FHNFTS----------KRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQI 213
F NF KR L + +F C +LI G +F+ HQ+
Sbjct: 243 FRNFCKIDGSKQITNYKRTILSAKILKISNNFYC--------FDLI-----GSAFLWHQV 289
Query: 214 RKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHE 273
R M+ + + LI +D P P + + V LY+ K+ D
Sbjct: 290 RCMMANLFLVGQELEEPQLIPDM--MDVVKTPQKP-IYEMASDVPLLLYDCKFPDD---- 342
Query: 274 SLHFHEVDKEVNEFRH--------KFILPYLVKTEITE 303
++ V++++ L Y +KT++ E
Sbjct: 343 ---VEWIETNVDDYKSIKYGKAVDALTLNYQIKTKVAE 377
>gi|449446486|ref|XP_004141002.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Cucumis
sativus]
Length = 455
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 109/271 (40%), Gaps = 53/271 (19%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ Y G ++G S+ Q T+E +I AL KA + +
Sbjct: 114 IALKVMYFGQRFYGFASEA---------QMEPTVESEIFRALEKARLLV----GGRKESC 160
Query: 61 FQRAARTDKGVSALKQIVSLKL-------PEEANK---------------EAINEHLPEQ 98
+ R RTDKGVS++ Q+++L L P N IN+ LP
Sbjct: 161 YSRCGRTDKGVSSVGQVIALYLRSNLKDPPNGENSCHNGEEQHDGEIDYVRVINKVLPND 220
Query: 99 IRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQY 158
IR+L V GF+++ +C R Y Y F + ++ K++
Sbjct: 221 IRVLGWCSVPVGFSARFSCLRRKYKYF---------------FWGANLNISAMERAGKKF 265
Query: 159 EGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVK-DGLELITLKIKGQSFMLHQIRKMV 217
G H+F NF + R IMSFD V+ +G L I+G +F+ HQ+R MV
Sbjct: 266 VGEHDFRNFCKMDAANVHNYRRRIMSFDISPCDVRTEGNPLWAFNIEGSAFLWHQVRCMV 325
Query: 218 GVAMAIARGFTSKDLIEKTFGLDQFDLPMAP 248
V + + D+I+ LD P P
Sbjct: 326 AVVFMVGQDLEDPDVID--ILLDPLRTPRKP 354
>gi|450180363|ref|ZP_21887187.1| tRNA pseudouridine synthase A [Streptococcus mutans 24]
gi|449248339|gb|EMC46589.1| tRNA pseudouridine synthase A [Streptococcus mutans 24]
Length = 249
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 115/267 (43%), Gaps = 35/267 (13%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G + G Q R M+T++ +I + L + N+ Q ++
Sbjct: 7 IISYDGTNFSGFQ----------RQPQMRTVQEEIEKTLLR--------LNSGQAVKIHG 48
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV A Q++ LP++ + E ++ P+ I ++ +++V F+++ +
Sbjct: 49 AGRTDAGVHAYGQVIHFDLPQQRDLEKLRFGLDTQTPDDIDVIQVEQVADDFHARYQKHR 108
Query: 120 RTYSYTC----PTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+TY + P T +++ F+ ++A +K+ GTH+F FT+ ++
Sbjct: 109 KTYEFLVDLGRPKNPLMRHYATHFPYKV---DFSVVKAAIKKLRGTHDFTGFTASGTSVE 165
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
R I E+ D + G F+ Q+R MVG + I G D I++
Sbjct: 166 NKV-RTISRATVEK---DDKTGFLIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPIDQIDR 221
Query: 236 TF--GLDQFDLPMAPGLGLLLEQVHYD 260
G P A GL L+++ YD
Sbjct: 222 ILESGDRSLAGPTAGSNGLYLKEIIYD 248
>gi|429765159|ref|ZP_19297461.1| tRNA pseudouridine synthase A [Clostridium celatum DSM 1785]
gi|429186902|gb|EKY27831.1| tRNA pseudouridine synthase A [Clostridium celatum DSM 1785]
Length = 244
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 126/270 (46%), Gaps = 40/270 (14%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ + Y G Y+G Q + GMKTI+G++ EA+F T +
Sbjct: 4 IKLTLEYDGTNYYGWQ----------KQNGMKTIQGELEEAIFNV---------TKEKCD 44
Query: 61 FQRAARTDKGVSALKQIVSLK----LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
++RTD GV A I + K +P +EA+N LP I ++ + V + F+++
Sbjct: 45 LTGSSRTDAGVHAKGFIANFKTNSKVPPNKFREALNVKLPNDIVVVKSEEVEESFHARYC 104
Query: 117 CNARTYSYTC--PTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
+TY Y+ A ++T ++ D ++ KQ+ GTH+F F ++ +
Sbjct: 105 AKGKTYEYSILNSDVPSALIRNTVYHYKYNLD-VEAMKIAAKQFIGTHDFAAFKTQGSSV 163
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFT-SKDLI 233
+ R I + E+ E+I + +KG F+ + +R +VG + + RG T + D+I
Sbjct: 164 KGTI-RTIFDVNVEK-----NDEIIKISVKGDGFLYNMVRIIVGTLINVGRGKTDATDII 217
Query: 234 EKTFGLDQFDLPMA----PGLGLLLEQVHY 259
+++ D +A P GL+L++V+Y
Sbjct: 218 NI---INKKDRTLAGDCVPPNGLILKEVYY 244
>gi|422880739|ref|ZP_16927195.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK355]
gi|332366230|gb|EGJ43985.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK355]
Length = 249
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 115/254 (45%), Gaps = 35/254 (13%)
Query: 22 FLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLK 81
F F R ++++ +I + L + N Q + A RTD GV AL Q++
Sbjct: 15 FAGFQRQPHARSVQEEIEKTLTR--------INKGQPVVIHGAGRTDSGVHALGQVLHFD 66
Query: 82 LPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDT 137
LPEE ++E A++ PE I + +++V+ F+S+ N +++TY + P++
Sbjct: 67 LPEERDEEKLRFALDTQTPEDIDFIRVEQVSDDFHSRYNKHSKTYEFLV---DIGRPKNP 123
Query: 138 KDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLDP---SCSRYIMSFDCEQP 190
T P + ++ + Q EGTH+F FT+ ++ + + + +D E+
Sbjct: 124 MMRHYATHYPYPLELGLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRYDAERN 183
Query: 191 FVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDL----PM 246
F + G F+ QIR MVG + I + I++ L++ D P
Sbjct: 184 F-------LVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRI--LEEKDRYLAGPT 234
Query: 247 APGLGLLLEQVHYD 260
A GL L+++ Y+
Sbjct: 235 AGPNGLYLKEIRYE 248
>gi|450066105|ref|ZP_21845802.1| tRNA pseudouridine synthase A [Streptococcus mutans NLML9]
gi|449209263|gb|EMC09795.1| tRNA pseudouridine synthase A [Streptococcus mutans NLML9]
Length = 249
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 117/268 (43%), Gaps = 37/268 (13%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G + G Q R ++T++ +I + L + N+ Q ++
Sbjct: 7 IISYDGTNFSGFQ----------RQPQVRTVQEEIEKTLLR--------LNSGQAVKVHG 48
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV A Q++ LP++ + E ++ P+ I ++ +++V F+++ +
Sbjct: 49 AGRTDAGVHAYGQVIHFDLPQQRDLEKLRFGLDTQTPDDIDVIQVEQVADDFHARYQKHR 108
Query: 120 RTYSYTCPTYAFATP--QDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD-- 175
+TY + P + F D F+ ++A +K+ GTH+F FT+ ++
Sbjct: 109 KTYEFLVDLGRPKNPLMRHYATHFPYKVD-FSVVKAAIKKLRGTHDFTGFTASGTSVENK 167
Query: 176 -PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+ SR + D + F + G F+ Q+R MVG + I G S D I+
Sbjct: 168 VRTISRATVEKDEKTGF-------LIFTFTGSGFLYKQVRNMVGTLLKIGNGRMSIDQID 220
Query: 235 KTF--GLDQFDLPMAPGLGLLLEQVHYD 260
+ G P A GL L+++ YD
Sbjct: 221 RILESGDRSLAGPTAASNGLYLKEIIYD 248
>gi|412990717|emb|CCO18089.1| predicted protein [Bathycoccus prasinos]
Length = 473
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 72/308 (23%), Positives = 123/308 (39%), Gaps = 49/308 (15%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFC------RNQGMKTIEGDIMEALFKAGFV--TEDS 52
+A+ AY G +FG S+ N ++TIEG + EAL K V +++
Sbjct: 45 IALELAYCGANHFGFSSQGCLQASNAETTNAKNNSHIRTIEGALFEALKKCRLVDPSKEI 104
Query: 53 FNTPQNIQFQRAARTDKGVSALKQIVSLKLPEEANKEA---------------------- 90
F P ++ + R RTD+GVS++ +VSL + +
Sbjct: 105 FGEP-SVDYSRCGRTDRGVSSIGNVVSLNVRCKGVGGGGGGEDEEDDEDGENGEEIDYVG 163
Query: 91 -INEHLPEQIRILSIKRVTKGFNSKNNCNARTYSY----TCPTYAFATPQDTKDDFRLTP 145
+N LP+ +R L V GF+S+ NC +R Y Y P+ ++ + P
Sbjct: 164 NLNRALPDDVRALCWYAVPDGFSSRFNCTSRRYEYHFTRVVRQNLAPPPRGGEEAGKCEP 223
Query: 146 DQF---NFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELI--- 199
++ ++ ++ GTH+F NF +R+I E+ + +
Sbjct: 224 EEILDVGRMREACEKLVGTHDFRNFCKMNVKDCRDYTRHIKECRIEKKNTERTTGALLRE 283
Query: 200 ---TLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFD----LPMAPGLGL 252
L I+G SF+ H +R + V + + D+I+ L + MAP L
Sbjct: 284 TDWVLIIEGSSFLWHMVRCIAAVLFQVGLRADAPDIIDDLLDLTKTPRKPLYAMAPEHSL 343
Query: 253 LLEQVHYD 260
+L YD
Sbjct: 344 VLVGCEYD 351
>gi|254583638|ref|XP_002497387.1| ZYRO0F04334p [Zygosaccharomyces rouxii]
gi|238940280|emb|CAR28454.1| ZYRO0F04334p [Zygosaccharomyces rouxii]
Length = 431
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 114/263 (43%), Gaps = 55/263 (20%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ F+Y G Y GL + + T+EG I++AL K V + Q+ +
Sbjct: 82 IALKFSYLGWNYNGLAVQKDV-------TPLPTVEGVIIDALMKCRLVASSNV---QDFR 131
Query: 61 FQRAARTDKGVSALKQIVSLK----LPEEANK------------EAINEHLPEQIRILSI 104
F R RTDKGVSA+ Q++SL+ L +E K + +N LPE I+I ++
Sbjct: 132 FSRCGRTDKGVSAMNQVISLEVRSNLSDEEQKDPSNDTRELQYAQILNHLLPEDIKISAM 191
Query: 105 K-RVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHN 163
R +GF+++ +C R Y Y F + +Q Y G H+
Sbjct: 192 CLRPPEGFDARYSCEYRHYKYL---------------FSGKGLMLDRMQKAAALYHGEHD 236
Query: 164 FHNFTSKRKPLDPS-----CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVG 218
F NF LD S +R I+ + + + D + L G +F+ HQ+R M+
Sbjct: 237 FRNFCK----LDGSKQITNYTRNILGSEIQH--ISDNMYCFDL--VGSAFLWHQVRCMMA 288
Query: 219 VAMAIARGFTSKDLIEKTFGLDQ 241
+ + +G +I +D+
Sbjct: 289 ILFLVGQGLEEPSVITNLLDVDK 311
>gi|448368394|ref|ZP_21555346.1| tRNA pseudouridine synthase A [Natrialba aegyptia DSM 13077]
gi|445652224|gb|ELZ05124.1| tRNA pseudouridine synthase A [Natrialba aegyptia DSM 13077]
Length = 287
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 103/267 (38%), Gaps = 32/267 (11%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G Y G Q R + T+E D+ +AL ++ V + P +
Sbjct: 3 AFRLAYDGTAYHGFQ----------RQPDVATVEDDLFDAL-RSLSVLASKADKPAG--Y 49
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSAL Q V+ P+ A+N LP IR + F++ ++ R
Sbjct: 50 AAAGRTDAGVSALAQTVAFDAPDWLTPRALNSDLPADIRAWAAADAPDEFHATHHARRRE 109
Query: 122 YSYT--CPTYAFATPQDTKDDFRLTPDQF---NFLQALLKQYEGTHNFHNFTSKRKPLDP 176
Y+Y P A + D PD+ + Q G H+FHN T P D
Sbjct: 110 YTYQLHAPPADDAPRRSGTADSTGDPDRAVDDDRFQRACHALSGDHDFHNLT----PDDH 165
Query: 177 SCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKT 236
+ R E I + + F +R++V +A A+ G + +E+
Sbjct: 166 NTERSPTLTATRD------AEFIVITVTAGGFSRELVRRLVSLAWAVGTGDAPLEKVERA 219
Query: 237 FGLDQF----DLPMAPGLGLLLEQVHY 259
G + + AP L+L V Y
Sbjct: 220 LGPEPLPGHEGIAPAPPEPLVLTDVRY 246
>gi|322386788|ref|ZP_08060412.1| tRNA pseudouridine synthase A [Streptococcus cristatus ATCC 51100]
gi|417922211|ref|ZP_12565700.1| tRNA pseudouridine synthase A [Streptococcus cristatus ATCC 51100]
gi|321269070|gb|EFX52006.1| tRNA pseudouridine synthase A [Streptococcus cristatus ATCC 51100]
gi|342833099|gb|EGU67387.1| tRNA pseudouridine synthase A [Streptococcus cristatus ATCC 51100]
Length = 249
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 113/252 (44%), Gaps = 31/252 (12%)
Query: 22 FLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLK 81
F F R ++++ +I + L + N Q I A RTD GV AL Q++
Sbjct: 15 FAGFQRQPHARSVQEEIEKTLTR--------INKGQPIVIHGAGRTDSGVHALGQVIHFD 66
Query: 82 LPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDT 137
LP ++E A++ PE I ++S++ VT+ F+++ +++TY + P++
Sbjct: 67 LPSARDEEKLRFALDTQTPEDIDVISVEEVTEDFHARYKPHSKTYEFLV---DIGRPKNP 123
Query: 138 KDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLD---PSCSRYIMSFDCEQP 190
T P + ++ +K EGTH+F FT+ ++ + ++ ++FD ++
Sbjct: 124 MMRHYATHYPYPLEIPLMEQAIKALEGTHDFTGFTASGTSVENKVRTITKASLTFDAQRN 183
Query: 191 FVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD--QFDLPMAP 248
F + G F+ QIR MVG + I + IE+ Q P A
Sbjct: 184 F-------LVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVNQIERILEEKDRQLAGPTAA 236
Query: 249 GLGLLLEQVHYD 260
GL L+++ Y+
Sbjct: 237 PNGLYLKEIIYE 248
>gi|149237835|ref|XP_001524794.1| tRNA pseudouridine synthase 3 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146451391|gb|EDK45647.1| tRNA pseudouridine synthase 3 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 491
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 120/272 (44%), Gaps = 59/272 (21%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ FAY G Y GL + + T+E I++AL K + E + ++
Sbjct: 131 VAIKFAYLGWNYNGLAFQN-------DPTPLPTVEEIILKALAKVKLIRE----PIEEVE 179
Query: 61 FQRAARTDKGVSALKQIVSLKL-----PEEANKEA-----------INEHLPEQIRILSI 104
+ + RTDKGVSA+ Q++S+KL P+E A IN +LP I++ +I
Sbjct: 180 YSKCGRTDKGVSAMNQVISIKLRSNLTPQEQQDPAFDAKEVDYFTVINANLPADIKVHAI 239
Query: 105 -KRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPD-QFNFLQALLKQYEGTH 162
R + F+++ +C R Y Y FR T + + + YEG H
Sbjct: 240 CLRPPENFDARFSCKERHYRYL---------------FRKTSTLDIDLMAQAAEYYEGLH 284
Query: 163 NFHNFTSKRKPLDPSCSRYIMSF--DCEQ----PFVKDGLELITLKIKGQSFMLHQIRKM 216
+F NF LD S+ + SF D + P DG L + G +F+ HQ+R M
Sbjct: 285 DFRNFCK----LD--GSKQLTSFVRDIRRSKIIPLDSDG-NLYCFDLIGNAFLWHQVRCM 337
Query: 217 VGVAMAIARGFTSKDLIEKTFGLDQFDLPMAP 248
V + + + S ++++ + +F P P
Sbjct: 338 VAILFLVGQKLESPEIVKDLMDVTKF--PTKP 367
>gi|118350997|ref|XP_001008777.1| tRNA pseudouridine synthase A family protein [Tetrahymena
thermophila]
gi|89290544|gb|EAR88532.1| tRNA pseudouridine synthase A family protein [Tetrahymena
thermophila SB210]
Length = 481
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 118/290 (40%), Gaps = 43/290 (14%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A+ +Y G+ Y GL + + T+E + +AL K + N F
Sbjct: 115 ALKMSYVGINYQGLAY---------QQETDNTVEEQLFKALEKTTLIK-----NRDNCNF 160
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPE--QIRILSIKRVTKGFNSKNNCNA 119
R+ RTDKGVSAL Q++ + L I E++ E IRIL +V FN++ +C
Sbjct: 161 TRSGRTDKGVSALGQVIGITLRTSI---KIGENIDEIDDIRILGCSKVDPAFNARFDCQK 217
Query: 120 RTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCS 179
R Y Y Y F D + R+ FL G H+F NF +
Sbjct: 218 RIYKY----YFFENQMDIQ---RMKEAANLFL--------GEHDFRNFCKIDVLQTLNYV 262
Query: 180 RYIMSFDCEQPFVKDGL-----ELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
R I D E+ G +L I+G +F+ HQIR M+ + + R ++
Sbjct: 263 RIIYQLDIEEVQANFGTLDPRSKLYVATIQGSAFLWHQIRNMMAILFLVGRKQEEPSIVT 322
Query: 235 KTFGLDQF----DLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEV 280
+ + + + MAP L+L Y+ + Y D + H+ ++
Sbjct: 323 ELLDIQKNPSKPNYEMAPDYPLVLFDCLYNNVSFNYSSDQIKIYEHYLQI 372
>gi|449990072|ref|ZP_21821315.1| tRNA pseudouridine synthase A [Streptococcus mutans NVAB]
gi|449182075|gb|EMB84121.1| tRNA pseudouridine synthase A [Streptococcus mutans NVAB]
Length = 249
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 115/267 (43%), Gaps = 35/267 (13%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G + G Q R M+T++ +I + L + N+ Q ++
Sbjct: 7 IISYDGTNFSGFQ----------RQPQMRTVQEEIEKTLLR--------LNSGQAVKIHG 48
Query: 64 AARTDKGVSALKQIVSLKLPEEANKEAI----NEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV A Q++ LP++ + E + + P+ I ++ +++V F+++ +
Sbjct: 49 AGRTDAGVHAYGQVIHFDLPQQRDLEKLRFGFDTQTPDDIDVIQVEQVADDFHARYQKHR 108
Query: 120 RTYSYTC----PTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+TY + P T +++ F+ ++A +K+ GTH+F FT+ ++
Sbjct: 109 KTYEFLVDLGRPKNPLMRHYATHFPYKV---DFSVVKAAIKKLRGTHDFTGFTAAGTSVE 165
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
R I E+ D + G F+ Q+R MVG + I G D I++
Sbjct: 166 NKI-RTISRATVEK---DDKTGFLIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPIDQIDR 221
Query: 236 TF--GLDQFDLPMAPGLGLLLEQVHYD 260
G P A GL L+++ YD
Sbjct: 222 ILESGDRSLAGPTAASNGLYLKEIIYD 248
>gi|257387360|ref|YP_003177133.1| tRNA pseudouridine synthase A [Halomicrobium mukohataei DSM 12286]
gi|257169667|gb|ACV47426.1| tRNA pseudouridine synthase [Halomicrobium mukohataei DSM 12286]
Length = 263
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 109/266 (40%), Gaps = 48/266 (18%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G Y G Q R ++T+EG+++ L + G D P +
Sbjct: 3 AYRIAYDGQPYHGFQ----------RQPDVETVEGELLATLDRLGVTAGD---VPAG--Y 47
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSAL Q V+ + PE + A N LP +R+ + V F++ ++ R
Sbjct: 48 AAAGRTDAGVSALAQTVAFEAPEWLSPAAFNSELPASVRVWASADVPDDFHATHDARERE 107
Query: 122 YSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRY 181
Y Y Y +A + + + G H+FHN T D S +
Sbjct: 108 YVY----YLYAPER-----------HDDRARRAADALSGEHDFHNLTP-----DDSGTVR 147
Query: 182 IMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQ 241
+S D ++G E + +++ F +R++VG+ I RG +++ G
Sbjct: 148 ALSID----LTREG-EFLVCRLRAGGFCRQLVRRVVGLVDEIRRGDAPLSKVDRVLGSKP 202
Query: 242 FDLPMAPGLG------LLLEQVHYDL 261
D A G+G L+L V Y +
Sbjct: 203 ID--GAAGVGPASPTPLVLVAVDYGV 226
>gi|253577209|ref|ZP_04854529.1| tRNA pseudouridine synthase A [Paenibacillus sp. oral taxon 786
str. D14]
gi|251843453|gb|EES71481.1| tRNA pseudouridine synthase A [Paenibacillus sp. oral taxon 786
str. D14]
Length = 261
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 122/280 (43%), Gaps = 48/280 (17%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ M +Y G YFG Q++ G T++ I A+ + T + ++
Sbjct: 4 LLMTVSYDGTNYFGFQTQ----------PGGNTVQDHIEGAIRQL---------TGETVK 44
Query: 61 FQRAARTDKGVSALKQIVSL----KLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ RTD GV A +Q ++P E A+N LP IR+L+ + V F+S+++
Sbjct: 45 IHGSGRTDAGVHARQQPFHFHTDSRIPVERWCLALNARLPSDIRVLTAREVPLTFHSRHS 104
Query: 117 CNARTYSYTCPTYAFATPQDTKDDFRL-TPDQFNF--LQALLKQYEGTHNFHNFTSKRKP 173
+TY YT T F P + +++ P Q N +QA L GTH+F +F S R+
Sbjct: 105 AKRKTYRYTINTNRF--PDVFQRNYQFHHPGQLNVDAMQASLPYLVGTHDFTSFAS-RQS 161
Query: 174 LDPSCSRYIMSFDCEQPFVKDGLE---------LITLKIKGQSFMLHQIRKMVGVAMAIA 224
S R I +D V D L ++ + G F+ H +R +VG + I
Sbjct: 162 TKLSHVRTI--YDAR--IVVDSLAKIPGTTGQGIVHFYVTGSGFLQHMVRIIVGTLIEIG 217
Query: 225 RGFTSKDLIEKTFGLDQFDL----PMAPGLGLLLEQVHYD 260
G + + I+ L+ D P A GL+L V Y+
Sbjct: 218 EGKRTPESIQAI--LEAKDRTAAGPTAESKGLMLWSVEYE 255
>gi|449919836|ref|ZP_21798176.1| tRNA pseudouridine synthase A [Streptococcus mutans 1SM1]
gi|449159126|gb|EMB62500.1| tRNA pseudouridine synthase A [Streptococcus mutans 1SM1]
Length = 249
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 117/270 (43%), Gaps = 41/270 (15%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G + G Q R M+T++ +I + L + N+ Q ++
Sbjct: 7 IISYDGTNFSGFQ----------RQPQMRTVQEEIEKTLLR--------LNSGQAVKIHG 48
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV A Q++ LP++ + E ++ P+ I ++ +++V F+++ +
Sbjct: 49 AGRTDAGVHAYGQVIHFDLPQQRDLEKLRFGLDTQTPDDIDVIQVEQVADDFHARYQKHR 108
Query: 120 RTYSYTC----PTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+TY + P T +++ F+ ++A +K+ GTH+F FT+ ++
Sbjct: 109 KTYEFLVDLGRPKNPLMRHYATHFPYKV---DFSVVKAAIKKLRGTHDFTGFTAAGTSVE 165
Query: 176 ---PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDL 232
+ SR + D + F + G F+ Q+R MVG + I G D
Sbjct: 166 NKVRTISRATVEKDEKTGF-------LIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPIDQ 218
Query: 233 IEKTF--GLDQFDLPMAPGLGLLLEQVHYD 260
I++ G P A GL L+++ YD
Sbjct: 219 IDRILESGDRSLAGPTAASNGLYLKEIIYD 248
>gi|290579596|ref|YP_003483988.1| tRNA pseudouridine synthase A [Streptococcus mutans NN2025]
gi|254996495|dbj|BAH87096.1| putative tRNA pseudouridine synthase A [Streptococcus mutans
NN2025]
Length = 249
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 117/270 (43%), Gaps = 41/270 (15%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G + G Q R M+T++ +I + L + N+ Q ++
Sbjct: 7 IISYDGTNFSGFQ----------RQPQMRTVQEEIEKTLLR--------LNSGQAVKVHG 48
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV A Q++ LP++ + E ++ P+ I ++ +++V F+++ +
Sbjct: 49 AGRTDAGVHAYGQVIHFDLPQQRDLEKLRFGLDTQTPDDIDVIQVEQVADDFHARYQKHR 108
Query: 120 RTYSYTC----PTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+TY + P T +++ F+ ++A +K+ GTH+F FT+ ++
Sbjct: 109 KTYEFLVDLGRPKNPLMRHYATHFPYKV---DFSVVKAAIKKLRGTHDFTGFTASGTSVE 165
Query: 176 ---PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDL 232
+ SR + D + F + G F+ Q+R MVG + I G D
Sbjct: 166 NKVRTISRATVEKDEKTGF-------LIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPIDQ 218
Query: 233 IEKTF--GLDQFDLPMAPGLGLLLEQVHYD 260
I++ G P A GL L+++ YD
Sbjct: 219 IDRILESGDRSLAGPTAASNGLYLKEIIYD 248
>gi|302676700|ref|XP_003028033.1| hypothetical protein SCHCODRAFT_60363 [Schizophyllum commune H4-8]
gi|300101721|gb|EFI93130.1| hypothetical protein SCHCODRAFT_60363 [Schizophyllum commune H4-8]
Length = 455
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 112/288 (38%), Gaps = 62/288 (21%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ F Y G + GL I + T+EG + AL +A V D +
Sbjct: 81 IALKFCYGGWDFGGLA-------IQKDRTPLPTVEGKLFGALVRARLV--DPKGGLEGCG 131
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKE----------------AINEHLPEQIRILSI 104
++R RTD+GVSA Q++SL + ++E IN HLP+ I+IL+
Sbjct: 132 WERCGRTDRGVSAAGQVISLWVRSALSQEELTPTATPTEEHPFIYMINRHLPDTIKILAW 191
Query: 105 KRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNF 164
V F+S+ +C R Y Y F +P ++A GTH+F
Sbjct: 192 SPVDPSFSSRYSCTWRHYKY------FFSPVGL---------DVAAMRAACAYLPGTHDF 236
Query: 165 HNFTSKRKPLDPS----------CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIR 214
N +DP+ I D P G+ + L KG SF+ H +R
Sbjct: 237 RNLCK----IDPTKQLDQFRRDILHASISPVDASNP---GGMHVFDL--KGSSFLYHMVR 287
Query: 215 KMVGVAMAIARGFTSKDLIEKTFGLDQFDLP---MAPGLGLLLEQVHY 259
++GV ++I L+ + P MA L L L Y
Sbjct: 288 NIMGVLLSIGARLEPPTLLPALMNVAPGCRPEYMMADALPLTLWDCGY 335
>gi|407420847|gb|EKF38702.1| pseudouridylate synthase I, putative [Trypanosoma cruzi
marinkellei]
Length = 623
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 109/475 (22%), Positives = 164/475 (34%), Gaps = 139/475 (29%)
Query: 7 YSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFV--TEDSFNTPQNIQFQRA 64
Y G GY GLQ + T+EG +++A+ G + E F R+
Sbjct: 2 YCGTGYRGLQ-------LQTHAPTHYTVEGVLIQAMKDVGLIEAIERGRVKGDMHHFARS 54
Query: 65 ARTDKGVSALKQIVSL-----KLPE----EANKEAINEHLPEQIRILSIKRVTKGFNSKN 115
RTD+GV A++ ++ L +L E KE +N LP IR+ + + F +
Sbjct: 55 CRTDRGVHAVRNLICLFVFTERLEALGGCEKLKEMLNTALPLTIRVARVTPLMGNFIPRF 114
Query: 116 NCNARTYSYTCPTYAFATPQDTKDDF------------RLTPDQFNFL------------ 151
+CN R Y Y P YAF P D F R + +FL
Sbjct: 115 SCNRRVYHYLIPAYAFLAPCDHWKSFYEKFPQAAELLRRRCAEARSFLDLSPAESDPLLA 174
Query: 152 ----------QALLKQYEGTHNFHNFT----------SKRKPLDPSCSRYIMS-FDCE-- 188
+ LL+ GTH FH+F+ RK + PS + + S + CE
Sbjct: 175 ALLAAVTRANELLLRYVVGTHRFHSFSVDVPQRGVSGCNRKVIVPSSNEAVRSVYRCEIA 234
Query: 189 ------------------------------------------------QPFVKDG----- 195
+ F DG
Sbjct: 235 PRVFLLPQNTTGLTRAEFQAALQIVGKDASLASTSSLLSCLLEAAATAERFSVDGFPSDV 294
Query: 196 -LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLL 254
L + +I+G SF+ + IRK+VG +A+ RG E + P+APG L L
Sbjct: 295 SLPFLIFQIEGNSFLFNMIRKIVGTLIAVLRGARETLFAEALSPDRRVVCPLAPGPYLYL 354
Query: 255 EQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITE-KPMLAWLELL 313
Y Y+ S+ FH + E + E+TE A L +
Sbjct: 355 FLSTYRRYDTVVRGS---RSVRFHPIAHE-------------WRGEVTEAAATFARLSVA 398
Query: 314 ADH---SFETRAAKAALAAANGEELQEVTDGEEEEDEEDRGGVRHSNGTSLAPKP 365
AD A L AA + G EEE++ G++ + ++ P P
Sbjct: 399 ADVVDLDLNRTPAIGTLLAARDVARRVTRPGWEEEEDCHLLGLKDYHPAAVEPHP 453
>gi|292655987|ref|YP_003535884.1| tRNA pseudouridine synthase A [Haloferax volcanii DS2]
gi|291370921|gb|ADE03148.1| tRNA pseudouridine synthase A [Haloferax volcanii DS2]
Length = 283
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 101/264 (38%), Gaps = 45/264 (17%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G Y G Q R + T+E I +A G +D + +
Sbjct: 3 AFRVAYDGRPYHGFQ----------RQPDVPTVEDAIFDACRALGVCDDDE----EPTDY 48
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSAL Q V+ + P+ A+N LP +R + F++++ R
Sbjct: 49 AAAGRTDAGVSALAQTVAFECPDWCTPRALNSELPGTVRAWADADAPDDFHARHWPTRRE 108
Query: 122 YSYT--CPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCS 179
Y Y PT F DD R +A G H+F N T P D
Sbjct: 109 YVYDLHAPTEGF-------DDDR--------AKAAFDACRGDHDFRNLT----PDDHGTV 149
Query: 180 RYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGL 239
R I + +DG + + ++++ F +R++V + A+ ++ G
Sbjct: 150 RAI-----DGGLTRDG-DFLLVRVEAGGFARELVRRLVSLVRAVGSDAAPLSKVDDALGP 203
Query: 240 DQFDLP----MAPGLGLLLEQVHY 259
D D P AP LLL V Y
Sbjct: 204 DHLDGPEGIAPAPPTPLLLTAVDY 227
>gi|448289975|ref|ZP_21481131.1| tRNA pseudouridine synthase A [Haloferax volcanii DS2]
gi|445580367|gb|ELY34746.1| tRNA pseudouridine synthase A [Haloferax volcanii DS2]
Length = 259
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 101/264 (38%), Gaps = 45/264 (17%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G Y G Q R + T+E I +A G +D + +
Sbjct: 3 AFRVAYDGRPYHGFQ----------RQPDVPTVEDAIFDACRALGVCDDDE----EPTDY 48
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSAL Q V+ + P+ A+N LP +R + F++++ R
Sbjct: 49 AAAGRTDAGVSALAQTVAFECPDWCTPRALNSELPGTVRAWADADAPDDFHARHWPTRRE 108
Query: 122 YSYT--CPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCS 179
Y Y PT F DD R +A G H+F N T P D
Sbjct: 109 YVYDLHAPTEGF-------DDDR--------AKAAFDACRGDHDFRNLT----PDDHGTV 149
Query: 180 RYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGL 239
R I + +DG + + ++++ F +R++V + A+ ++ G
Sbjct: 150 RAI-----DGGLTRDG-DFLLVRVEAGGFARELVRRLVSLVRAVGSDAAPLSKVDDALGP 203
Query: 240 DQFDLP----MAPGLGLLLEQVHY 259
D D P AP LLL V Y
Sbjct: 204 DHLDGPEGIAPAPPTPLLLTAVDY 227
>gi|357119728|ref|XP_003561586.1| PREDICTED: tRNA pseudouridine synthase 3-like [Brachypodium
distachyon]
Length = 450
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 100/248 (40%), Gaps = 39/248 (15%)
Query: 33 TIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLPEEANK---- 88
T+E +I + L +A + + + + R RTDKGVSA Q++SL L
Sbjct: 139 TVESEIFKVLERARLLV----GSRKESCYSRCGRTDKGVSATGQVISLYLRSNLKDPGGN 194
Query: 89 -----------EAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDT 137
+ +N LP IR++ V F ++ +C R Y Y P+
Sbjct: 195 VLDERSEIDYVKVLNRMLPRDIRVIGWCPVAADFLARFSCLGREYKYLFWKGGLDVPK-- 252
Query: 138 KDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVK-DGL 196
+Q ++ G H+F NF + R+I FD + +
Sbjct: 253 -------------MQKAASKFIGEHDFRNFCKMDAANVSNYRRHITDFDISAYDERSNND 299
Query: 197 ELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQF----DLPMAPGLGL 252
EL + IKG +F+ HQ+R MV V I +G S +++ + + MAP L L
Sbjct: 300 ELWAMNIKGSAFLWHQVRCMVAVLFLIGQGLESPCVVDSLLDITRTPRKPQYTMAPELPL 359
Query: 253 LLEQVHYD 260
+L +D
Sbjct: 360 ILRSCKFD 367
>gi|401425633|ref|XP_003877301.1| putative pseudouridine synthase A-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493546|emb|CBZ28834.1| putative pseudouridine synthase A-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 499
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 128/309 (41%), Gaps = 54/309 (17%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G + GL + + T+EG + +AL + + ED P N
Sbjct: 62 IALRLAYHGHVHDGLAKQ---------KETDNTVEGLVCDALRRLRLIPEDG---PHN-- 107
Query: 61 FQRAARTDKGVSALKQIVSL------------KLPEEANKEAINEHLPEQIRILSIKRVT 108
F R RTDKGVSAL +SL +LP +N LP IRI+ V
Sbjct: 108 FGRCGRTDKGVSALGNALSLTARASCTADAEPQLPPLDYCSMLNNVLPSTIRIVGCALVD 167
Query: 109 KGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFT 168
F+++ +C RTY Y Y F + +Q + GTHNF NF
Sbjct: 168 DAFDARFSCVHRTYRY----YFFHRGLN-----------LAAMQEAAAFFLGTHNFRNFC 212
Query: 169 SKRKPLDPSCSRYIMSFDCEQPFVKDGL-ELIT-LKIKGQSFMLHQIRKMVGVAMAIARG 226
K + S ++ + + + L ELI+ L+I+ SF+ HQIR + V + RG
Sbjct: 213 ---KMDVVNVSNFVRTVFSVGLYPSEELPELISYLEIRANSFLYHQIRCTMEVLFLVGRG 269
Query: 227 FTSKDLIEKTFGLDQFD--LPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEV 284
+ +++ L P+A G L+L +D + FH +++E+
Sbjct: 270 LEAPSVVQTLLELGDCKPTYPLADGTPLVLWDCGFDNVQWEMSH------CAFHAMEQEL 323
Query: 285 NEFRHKFIL 293
+ ++
Sbjct: 324 QDISTALLI 332
>gi|118101049|ref|XP_417580.2| PREDICTED: pseudouridylate synthase-like 1 [Gallus gallus]
Length = 291
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 107/233 (45%), Gaps = 34/233 (14%)
Query: 59 IQFQRAARTDKGVSALKQIVSLKLPEEANKEA---------INEHL-PEQIRILSIKRVT 108
I+F ++RTD GV AL L + K A +N HL PE IRILS RVT
Sbjct: 51 IKFHISSRTDSGVHALCNSAHLDIQRAPGKPAFQERVLIGCLNHHLKPEPIRILSAYRVT 110
Query: 109 KGFNSKNNCNARTYSYT----CPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYE---GT 161
F+++ + +RTY Y C T+ P +D P + + A+ + GT
Sbjct: 111 NNFHARFSALSRTYIYRLLMGC-THHSEIPVFERDLCWAPPGGYLNVPAMQDAAQFLLGT 169
Query: 162 HNFHNFTS--KRKPLDPSCSRYIMSFDCEQP--------FVKDGLELITLKIKGQSFMLH 211
H+F F S P S + I+ D QP + GL+ LK K +SF+
Sbjct: 170 HDFSTFCSLNSETPFR-SPVKTILQADI-QPSSGFLSHHYEYRGLQFWELKFKSRSFLYR 227
Query: 212 QIRKMVGVAMAIARGFTSKDLIEKTFGL-DQFDLP---MAPGLGLLLEQVHYD 260
Q+R+MVG +A+ +G + I++ + D P MAP GL L+ V Y+
Sbjct: 228 QVRRMVGALVAVGQGKLAPHHIKELLEMKDARAFPAFAMAPSSGLFLKSVEYN 280
>gi|315221272|ref|ZP_07863195.1| tRNA pseudouridine synthase A [Streptococcus anginosus F0211]
gi|315189631|gb|EFU23323.1| tRNA pseudouridine synthase A [Streptococcus anginosus F0211]
Length = 249
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 120/270 (44%), Gaps = 41/270 (15%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G G+ G Q R ++++ +I + L K N+ ++
Sbjct: 7 IISYDGHGFAGFQ----------RQLHARSVQEEIEKTLTK--------INSGASVVIHG 48
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV AL Q++ LP++ + E A++ PE I +S++ V + F+S+ ++
Sbjct: 49 AGRTDSGVHALGQVIHFDLPQKRDGEKLRFALDTQTPEDIDFISVEEVNEAFHSRYCKHS 108
Query: 120 RTYSYTCPTYAFATPQDTKDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+TY + P++ + T P + ++ +++ EGTH+F FT+ ++
Sbjct: 109 KTYEFIVD---IGRPKNPMMRYYATHYPYPLDLSLIEEAIEKLEGTHDFTGFTASGTSVE 165
Query: 176 ---PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDL 232
+ + + FD ++ F + G F+ QIR MVG + I G +
Sbjct: 166 NKIRTITEARLVFDEKRNF-------LMFTFSGNGFLYKQIRNMVGTLLKIGNGRMPVEQ 218
Query: 233 IEKTFGLDQFDL--PMAPGLGLLLEQVHYD 260
I++ L P A GL L+++ Y+
Sbjct: 219 IDRILTEKDRHLAGPTAAPNGLYLKEIRYE 248
>gi|397498358|ref|XP_003819951.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Pan paniscus]
Length = 481
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 124/309 (40%), Gaps = 72/309 (23%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K V + Q
Sbjct: 65 VALRIAYMGWGYQGFASQ---------ENTNNTIEEKLFEALTKTRLV-----ESRQTSN 110
Query: 61 FQRAARTDKGVSALKQIVSLKL----PEEANKE-------------------AINEHLPE 97
+ R RTDKGVSA Q++SL L P + E +N LP
Sbjct: 111 YHRCGRTDKGVSAFGQVISLDLRSHFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPP 170
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IRIL+ V F+++ +C RTY Y P + D + + ++
Sbjct: 171 DIRILAWAPVEPSFSARFSCLERTYRYFFP----------RADLDIVT-----MDYAAQK 215
Query: 158 YEGTHNFHNFTSKRKPLDPSCS-----RYIMSFDCE-------QPFVKDGLELITLKIKG 205
Y GTH+F N +D + R I+S + + ++ +L ++ G
Sbjct: 216 YVGTHDFRNLCK----MDVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTG 271
Query: 206 QSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQF----DLPMAPGLGLLLEQVHYDL 261
Q+F+ HQ+R M+ + I +G ++I++ +++ MA L+L ++
Sbjct: 272 QAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFEN 331
Query: 262 YNQKYGQDG 270
N Y Q+
Sbjct: 332 VNWIYDQEA 340
>gi|375083694|ref|ZP_09730712.1| tRNA pseudouridine synthase A [Thermococcus litoralis DSM 5473]
gi|374741694|gb|EHR78114.1| tRNA pseudouridine synthase A [Thermococcus litoralis DSM 5473]
Length = 262
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 117/262 (44%), Gaps = 43/262 (16%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
M AY G ++G Q R ++T+E +I+ L K G + P++ F+
Sbjct: 1 MKIAYDGRRFYGFQ----------RQPNLRTVEAEIIRVLTKLGII-----ENPKDANFK 45
Query: 63 RAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNAR 120
A+RTD+GVSA +V+ PE + +N HL + +L +V + F+ + +
Sbjct: 46 GASRTDRGVSAFGNVVAFNTFKPELTSPRILNHHL-RDVWVLGRAQVPEDFHPRFWSKGK 104
Query: 121 TYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSR 180
Y Y F + +++ + + G H+F NF + +P
Sbjct: 105 VYRYYLLNEGFDIEK---------------MKSCAEIFVGVHDFSNFAKLEEDKNP---- 145
Query: 181 YIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD 240
I D + + ++IT++++G+SF+ +R+++ A G S + +++ +
Sbjct: 146 -IRKIDRIEVLQRG--KVITVEVEGESFLWEMVRRIITALKLCASGALSIEEVKRMLE-E 201
Query: 241 QFD--LPMAPGLGLLLEQVHYD 260
+ D LP AP L+L +V YD
Sbjct: 202 EVDKKLPPAPPENLVLWEVKYD 223
>gi|448361248|ref|ZP_21549869.1| tRNA pseudouridine synthase A [Natrialba asiatica DSM 12278]
gi|445651058|gb|ELZ03968.1| tRNA pseudouridine synthase A [Natrialba asiatica DSM 12278]
Length = 287
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 109/274 (39%), Gaps = 46/274 (16%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G Y G Q R + T+E ++ AL + D+ + P +
Sbjct: 3 AFRLAYDGTAYHGFQ----------RQPDVATVEDELFAALESLSVLATDA-DKPAG--Y 49
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSAL Q V+ P+ A+N LP IR + F++ ++ R
Sbjct: 50 AAAGRTDAGVSALAQTVAFDAPDWLTPRALNSDLPADIRAWAAADAPDEFHATHHARRRE 109
Query: 122 YSYTCPTYAFATPQD-------TKD-----DFRLTPDQFNFLQALLKQYEGTHNFHNFTS 169
Y+Y +A P D T D D + D+F +L G H+FHN T
Sbjct: 110 YTYQL----YAPPADDAPRRPGTADSTANRDRAVDDDRFRRACHVLS---GDHDFHNLTP 162
Query: 170 KRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTS 229
+ + S + + D E I + + F +R++V +A A+ G S
Sbjct: 163 DDRNTERSPT-LTATRDA---------EFIVVTVTAGGFARELVRRLVSLARAVGTGDAS 212
Query: 230 KDLIEKTFGLDQF----DLPMAPGLGLLLEQVHY 259
+ +E+ G + + AP L+L V Y
Sbjct: 213 LEKVERALGPEPLPGHKGIAPAPPEPLVLTDVRY 246
>gi|187734897|ref|YP_001877009.1| tRNA pseudouridine synthase A [Akkermansia muciniphila ATCC
BAA-835]
gi|238691867|sp|B2UNB6.1|TRUA_AKKM8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|187424949|gb|ACD04228.1| tRNA pseudouridine synthase A [Akkermansia muciniphila ATCC
BAA-835]
Length = 265
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 111/271 (40%), Gaps = 43/271 (15%)
Query: 6 AYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAA 65
AY G Y G QS+ G +T++ D++E F F T + +
Sbjct: 9 AYDGRPYLGWQSQ----------PGGRTVQ-DVLERAFSGLFGT--------TCRIHGSG 49
Query: 66 RTDKGVSALKQIV------SLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
RTD GV AL Q+ + ++P + A+N LP IRI + V GF+++ +
Sbjct: 50 RTDAGVHALGQVFHADAPDTHRIPADKWPAALNTRLPRTIRITHAEYVPPGFHARFSATG 109
Query: 120 RTYSYTCPTYAFATPQDTKDDF-RLTPDQFNFLQALLKQYEGTHNFHNFTSKR----KPL 174
+TY Y P D + R + L+ + + GTH+F F + R +P+
Sbjct: 110 KTYRYCISRAPILNPFDAGLAWHRPLAWSVDILEQAVHLFRGTHDFTAFAALRGNEPRPI 169
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
R ++ Q V E + + G F+ +R M G A ARG K +E
Sbjct: 170 PEGYFRRTIT----QTQVAQTGEHVFITFTGTGFLYKMVRLMTGAAHEAARG---KITLE 222
Query: 235 KTFGLDQFDLP------MAPGLGLLLEQVHY 259
+ L LP AP GL L +VHY
Sbjct: 223 ELARLINAPLPDDKSPFCAPPDGLTLMRVHY 253
>gi|398019410|ref|XP_003862869.1| pseudouridine synthase A-like protein, putative [Leishmania
donovani]
gi|322501100|emb|CBZ36178.1| pseudouridine synthase A-like protein, putative [Leishmania
donovani]
Length = 499
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 126/309 (40%), Gaps = 54/309 (17%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G + GL + + T+EG + +AL + + ED P N
Sbjct: 62 IALRLAYHGHVHDGLAKQ---------KETDNTVEGLVCDALRRLRLIPEDG---PHN-- 107
Query: 61 FQRAARTDKGVSALKQIVSL------------KLPEEANKEAINEHLPEQIRILSIKRVT 108
F R RTDKGVSAL +SL +LP +N LP IRI+ V
Sbjct: 108 FGRCGRTDKGVSALGNALSLTARASCTADAEPQLPPLDYCSMLNNVLPSTIRIVGCALVD 167
Query: 109 KGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFT 168
F+++ +C RTY Y Y F + +Q + GTHNF NF
Sbjct: 168 DAFDARFSCVHRTYRY----YFFHRGLN-----------LEAMQEAAAFFLGTHNFRNFC 212
Query: 169 SKRKPLDPSCSRYIMSFDCEQPFVKDGL-ELIT-LKIKGQSFMLHQIRKMVGVAMAIARG 226
+ R + S + L ELI+ L+I+ SF+ HQIR ++ V + RG
Sbjct: 213 KMDVVNVSNFVRTVFSVGLHP---SEALPELISYLEIRANSFLYHQIRCIMEVLFLVGRG 269
Query: 227 FTSKDLIEKTF--GLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEV 284
+++ G + P+A G L+L +D + FH +++E+
Sbjct: 270 LEVPSVVQTLLERGDRKPTYPLADGTPLVLWDCGFDNVQWQMSH------CAFHAMEQEL 323
Query: 285 NEFRHKFIL 293
+ ++
Sbjct: 324 QDISTALLI 332
>gi|171777516|ref|ZP_02919238.1| hypothetical protein STRINF_00067 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|379704648|ref|YP_005203107.1| tRNA pseudouridylate synthase I [Streptococcus infantarius subsp.
infantarius CJ18]
gi|171283226|gb|EDT48650.1| tRNA pseudouridine synthase A [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|374681347|gb|AEZ61636.1| tRNA pseudouridylate synthase I [Streptococcus infantarius subsp.
infantarius CJ18]
Length = 249
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 96/221 (43%), Gaps = 23/221 (10%)
Query: 53 FNTPQNIQFQRAARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVT 108
N+ Q ++ A RTD GV A Q+V LP+ + E ++ PE I ++ ++ V+
Sbjct: 38 LNSGQPVKVHGAGRTDSGVHAYGQVVHFDLPQARDVEKLRFGLDTQSPEDIDVVKVELVS 97
Query: 109 KGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLT----PDQFNFLQALLKQYEGTHNF 164
F+S+ N +++TY + + P++ T P +Q +K GTH+F
Sbjct: 98 DDFHSRYNKHSKTYEFLVDS---GRPKNPMMRHYATHYPYPLDLALMQEAIKDLVGTHDF 154
Query: 165 HNFTSKRKPLD---PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAM 221
FT+ ++ + +R + D + F G F+ Q+R MVG +
Sbjct: 155 TGFTASGTSVENKVRTITRATVDIDEKTGF-------FVFTFSGNGFLYKQVRNMVGTLL 207
Query: 222 AIARGFTSKDLIEKTFGLDQFDL--PMAPGLGLLLEQVHYD 260
I G I+ DL P A G GL L+++ YD
Sbjct: 208 KIGNGRMPVSQIKTVLASKNRDLAGPTAAGNGLYLKEIIYD 248
>gi|317055617|ref|YP_004104084.1| tRNA pseudouridine synthase A [Ruminococcus albus 7]
gi|315447886|gb|ADU21450.1| tRNA pseudouridine synthase A [Ruminococcus albus 7]
Length = 245
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 109/267 (40%), Gaps = 36/267 (13%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
M AY G Y G Q R ++ + +A+FK T +N+ Q
Sbjct: 1 MTLAYDGSNYHGWQ----------RQSNALAVQEVVEDAIFKL---------TGENVVVQ 41
Query: 63 RAARTDKGVSALKQIVSLKLPEEANKEAI----NEHLPEQIRILSIKRVTKGFNSKNNCN 118
+RTD GV A + ++S L N I N LP+ I ++ + +GF+++ C
Sbjct: 42 GCSRTDAGVHAREYVLSFGLELPINCRGIQLGLNSWLPDDISVIGCEEADEGFHARYMCK 101
Query: 119 ARTYSYTCPTYAFATPQDTKDDFRLT-PDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPS 177
+ Y Y P FR T P L K + G H+F F S + +
Sbjct: 102 GKEYEYIVHNSRIKDPFMRNTAFRNTYPIDEVLLDRAAKYFVGEHDFKAFCSTACDKEIT 161
Query: 178 CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTF 237
R I FD ++G ++I + G F+ + +R MVG + I G + D I +
Sbjct: 162 V-RKIYRFDVR----REGDKVI-FTVAGNGFLYNMVRIMVGTLLFINEGKIAADAIPRI- 214
Query: 238 GLDQFDLPMA----PGLGLLLEQVHYD 260
LD D A P GL L +V+YD
Sbjct: 215 -LDSKDRKKAGKTVPPQGLYLNKVYYD 240
>gi|255088754|ref|XP_002506299.1| predicted protein [Micromonas sp. RCC299]
gi|226521571|gb|ACO67557.1| predicted protein [Micromonas sp. RCC299]
Length = 601
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 86/195 (44%), Gaps = 32/195 (16%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQ--N 58
+A++ Y G GY G + +G T++ + +ALF AG + ++ +
Sbjct: 113 VALLMGYVGAGYSGNTTNASL------PRG-STVDDVLEDALFDAGCILLSNYRSRSLSR 165
Query: 59 IQFQRAARTDKGVSALKQIVSLKL----------PEEANKEA-INEHLPEQIRILSIKRV 107
+++ R++RTDKGVS+L +VS +L PE A IN HLP +R+
Sbjct: 166 LKWSRSSRTDKGVSSLATVVSARLEVDVGVWENDPEGTRIAADINRHLPNHVRVFGAYST 225
Query: 108 TKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLT-PDQFNFLQA-----------LL 155
K F ++ C RTY Y P + + D L P A L
Sbjct: 226 PKSFQARRACVRRTYDYLLPATCLGLNVNGERDAALAWPGAPELADATGEEVMARFRRAL 285
Query: 156 KQYEGTHNFHNFTSK 170
+ +EG+H FHN+T +
Sbjct: 286 RMFEGSHYFHNYTRR 300
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 179 SRYIMSFDCEQPFV----KDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+R + SF P V KD + + + G SFML+QIRKM+ A+A A G +LI
Sbjct: 377 ARKVNSFIAADPAVAAGHKDAPPFVRVTVNGDSFMLYQIRKMIATAVAAAIGHFPLELIP 436
Query: 235 KTFGLD-QFDLPMAPGLGLLL 254
+ + P+AP L L
Sbjct: 437 ASLTRPARIATPIAPASTLYL 457
>gi|390942069|ref|YP_006405830.1| pseudouridylate synthase I [Belliella baltica DSM 15883]
gi|390415497|gb|AFL83075.1| pseudouridylate synthase I [Belliella baltica DSM 15883]
Length = 258
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 115/245 (46%), Gaps = 38/245 (15%)
Query: 7 YSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAAR 66
Y G+ Y G Q + G+KTI+G +E +F+ F E+ FN A R
Sbjct: 14 YLGLRYHGWQ----------KQPGLKTIQGK-LEKVFRYVFGHEE-FNILS------AGR 55
Query: 67 TDKGVSA------LKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNAR 120
TD GVS L I + LP ++ +NE+LP+ IR+L KRV+ FN + A+
Sbjct: 56 TDSGVSCHRGAFELFNIAEIDLPSFIDQ--VNENLPDDIRLLEGKRVSLDFNIIQDVTAK 113
Query: 121 TYSYTCPT----YAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDP 176
Y Y+ + + F T L D ++A + G H+F F +K+K D
Sbjct: 114 EYRYSFTSGEKFHPFVAGNLTYFSGELDIDS---MKATADIFVGEHDFRRFCAKQKQSD- 169
Query: 177 SCSRYIMSFDC--EQPFVKDG--LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDL 232
+ R I + + + DG L+ ++KG+ F++HQ+R M+G + + +G +K
Sbjct: 170 NYHRQIFESEILEDNLLLTDGSSLKRYCYRVKGKGFLMHQVRLMMGSLLEVGKGIITKAD 229
Query: 233 IEKTF 237
I++
Sbjct: 230 IQEAL 234
>gi|73668859|ref|YP_304874.1| tRNA pseudouridine synthase A [Methanosarcina barkeri str. Fusaro]
gi|121729516|sp|Q46CU8.1|TRUA_METBF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|72396021|gb|AAZ70294.1| pseudouridylate synthase [Methanosarcina barkeri str. Fusaro]
Length = 269
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 127/303 (41%), Gaps = 59/303 (19%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G + G Q + ++T+EG++ +AL G + +P++
Sbjct: 3 VALKLAYIGTEFHGSQIQ----------PNVETVEGELFKALRNLGII-----ESPKSAN 47
Query: 61 FQRAARTDKGVSALKQIVS-------LKLPEEANKEAINEHLPEQIRILSIKRVTKGFNS 113
+ A RTD GV AL+Q+V+ L +P IN L I + + V F++
Sbjct: 48 YTCAGRTDAGVHALEQVVAFDTDKLNLAIPR-----VINSELTPGIWVWAHAEVPLSFDA 102
Query: 114 KNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKP 173
+ + +R Y Y + D + FL GTH+F NF+ R
Sbjct: 103 RRDAVSRHYRYVMSGKEY--------DISKIREASKFLL-------GTHDFENFS--RTN 145
Query: 174 LDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLI 233
+ S R I D DG ELI + + G SF+ + +RK+V I +G D +
Sbjct: 146 GEKSTVRTIERIDARI----DG-ELIKIDVVGNSFLWNMVRKIVTALSMIGKGVRDTDWL 200
Query: 234 EKTFGLDQFD--LPMAPGLGLLLEQVHY--------DLYNQKYGQDGMHESLHFHEVDKE 283
+ + ++ + AP GL L +V+Y D Y+ + D + + H V E
Sbjct: 201 LQMLNPEIYEEGIESAPAYGLTLLKVNYNEKIEWIEDNYSIRRAGDQNQKRILRHRVMAE 260
Query: 284 VNE 286
V E
Sbjct: 261 VLE 263
>gi|24378608|ref|NP_720563.1| tRNA pseudouridine synthase A [Streptococcus mutans UA159]
gi|397648877|ref|YP_006489404.1| tRNA pseudouridine synthase A [Streptococcus mutans GS-5]
gi|449866541|ref|ZP_21779563.1| tRNA pseudouridine synthase A [Streptococcus mutans U2B]
gi|449869723|ref|ZP_21780249.1| tRNA pseudouridine synthase A [Streptococcus mutans 8ID3]
gi|449876482|ref|ZP_21782813.1| tRNA pseudouridine synthase A [Streptococcus mutans S1B]
gi|449885732|ref|ZP_21785773.1| tRNA pseudouridine synthase A [Streptococcus mutans SA41]
gi|449911210|ref|ZP_21795031.1| tRNA pseudouridine synthase A [Streptococcus mutans OMZ175]
gi|449916643|ref|ZP_21796978.1| tRNA pseudouridine synthase A [Streptococcus mutans 15JP3]
gi|449943071|ref|ZP_21806268.1| tRNA pseudouridine synthase A [Streptococcus mutans 11A1]
gi|449985967|ref|ZP_21819969.1| tRNA pseudouridine synthase A [Streptococcus mutans NFSM2]
gi|449995390|ref|ZP_21822981.1| tRNA pseudouridine synthase A [Streptococcus mutans A9]
gi|450041028|ref|ZP_21837161.1| tRNA pseudouridine synthase A [Streptococcus mutans T4]
gi|450077661|ref|ZP_21850578.1| tRNA pseudouridine synthase A [Streptococcus mutans N3209]
gi|450115557|ref|ZP_21863985.1| tRNA pseudouridine synthase A [Streptococcus mutans ST1]
gi|38258780|sp|Q8DWH1.1|TRUA_STRMU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|24376463|gb|AAN57869.1|AE014860_6 putative tRNA pseudouridine synthase A [Streptococcus mutans UA159]
gi|392602446|gb|AFM80610.1| tRNA pseudouridine synthase A [Streptococcus mutans GS-5]
gi|449149680|gb|EMB53471.1| tRNA pseudouridine synthase A [Streptococcus mutans 11A1]
gi|449155015|gb|EMB58551.1| tRNA pseudouridine synthase A [Streptococcus mutans 15JP3]
gi|449157859|gb|EMB61293.1| tRNA pseudouridine synthase A [Streptococcus mutans 8ID3]
gi|449178575|gb|EMB80831.1| tRNA pseudouridine synthase A [Streptococcus mutans NFSM2]
gi|449184577|gb|EMB86513.1| tRNA pseudouridine synthase A [Streptococcus mutans A9]
gi|449198203|gb|EMB99328.1| tRNA pseudouridine synthase A [Streptococcus mutans T4]
gi|449210881|gb|EMC11308.1| tRNA pseudouridine synthase A [Streptococcus mutans N3209]
gi|449227841|gb|EMC27239.1| tRNA pseudouridine synthase A [Streptococcus mutans ST1]
gi|449252317|gb|EMC50300.1| tRNA pseudouridine synthase A [Streptococcus mutans S1B]
gi|449255008|gb|EMC52890.1| tRNA pseudouridine synthase A [Streptococcus mutans SA41]
gi|449258568|gb|EMC56141.1| tRNA pseudouridine synthase A [Streptococcus mutans OMZ175]
gi|449263711|gb|EMC61076.1| tRNA pseudouridine synthase A [Streptococcus mutans U2B]
Length = 249
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 115/267 (43%), Gaps = 35/267 (13%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G + G Q R ++T++ +I + L + N+ Q ++
Sbjct: 7 IISYDGTNFSGFQ----------RQPQVRTVQEEIEKTLLR--------LNSGQAVKIHG 48
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV A Q++ LP++ + E ++ P+ I ++ +++V F+++ +
Sbjct: 49 AGRTDAGVHAYGQVIHFDLPQQRDLEKLRFGLDTQTPDDIDVIQVEQVADDFHARYQKHR 108
Query: 120 RTYSYTC----PTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+TY + P T +++ F+ ++A +K+ GTH+F FT+ ++
Sbjct: 109 KTYEFLVDLGRPKNPLMRHYATHFPYKV---DFSVVKAAIKKLRGTHDFTGFTASGTSVE 165
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
R I E+ D + G F+ Q+R MVG + I G D I++
Sbjct: 166 NKV-RTISRATVEK---DDKTGFLIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPIDQIDR 221
Query: 236 TF--GLDQFDLPMAPGLGLLLEQVHYD 260
G P A GL L+++ YD
Sbjct: 222 ILESGDRSLAGPTAASNGLYLKEIIYD 248
>gi|335438472|ref|ZP_08561215.1| tRNA pseudouridine synthase A [Halorhabdus tiamatea SARL4B]
gi|334891517|gb|EGM29764.1| tRNA pseudouridine synthase A [Halorhabdus tiamatea SARL4B]
Length = 273
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 107/263 (40%), Gaps = 44/263 (16%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G + G Q R + T+ I++AL +A V D+ + P +
Sbjct: 8 AFRIAYDGRPFHGFQ----------RQPDVGTVSDAILDAL-RALDVLGDADDVPPG--Y 54
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSAL Q V+ PE A+N LP +R + F++ ++ AR
Sbjct: 55 AAAGRTDAGVSALAQTVAFDCPEWLTPAALNSELPADVRAWASADAFADFHATHHAVARE 114
Query: 122 YSYTCPTYAFATPQDTKDDFRLTPD-QFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSR 180
Y+Y PD + L +G H+FHNFT D + +
Sbjct: 115 YTYHL----------------HAPDASLSRATEALDALDGEHDFHNFTP-----DETGTV 153
Query: 181 YIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD 240
+S D + + + + ++ F +R+ V V A+A G D I++ G D
Sbjct: 154 RDLSGDIHR-----DSDFLVVTLRADGFPRQFVRRAVTVVDAVASGAAGLDRIDRLLGGD 208
Query: 241 QFDLP--MAPGL--GLLLEQVHY 259
+ P +AP L+L V Y
Sbjct: 209 PVEGPGGLAPATPEALVLTAVEY 231
>gi|308812814|ref|XP_003083714.1| PUSH_ARATH Putative tRNA pseudouridine synthase (ISS) [Ostreococcus
tauri]
gi|116055595|emb|CAL58263.1| PUSH_ARATH Putative tRNA pseudouridine synthase (ISS) [Ostreococcus
tauri]
Length = 543
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 85/185 (45%), Gaps = 26/185 (14%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMK--TIEGDIMEALFKAGFVTEDSFNTP-- 56
+A++ AY G GY G Q ++ T++ + +ALF+ G + ++ +
Sbjct: 90 VALLLAYVGAGYKGNTHNA---------QAVRGTTVDDVVEDALFRWGGILLPNYRSKGL 140
Query: 57 QNIQFQRAARTDKGVSALKQIVSLKL---PE--------EANKEAINEHLPEQIRILSIK 105
Q +++ R++RTDKGVS+L +VSL+ PE A I +HLP+ + ++
Sbjct: 141 QRLKWSRSSRTDKGVSSLCTVVSLRAEIDPEVWTTDVEARATARDITKHLPDDVECFAVY 200
Query: 106 RVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFH 165
K F ++ C RTY Y P D D+ + L + G+H FH
Sbjct: 201 NTPKSFQARRECVMRTYEYLLPARVLGLDGDAMDESGRR--RLALFNEALSCFIGSHPFH 258
Query: 166 NFTSK 170
N+T +
Sbjct: 259 NYTKR 263
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 8/72 (11%)
Query: 189 QPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMA 247
+PFV+ + ++G+SFML+QIRKM+ A+A++ G + + + + +P+A
Sbjct: 382 EPFVR-------VSVRGESFMLYQIRKMIASAVAVSLGHCPLEFLPASLARPCRAAMPLA 434
Query: 248 PGLGLLLEQVHY 259
P L L V +
Sbjct: 435 PASTLYLYDVEF 446
>gi|212223540|ref|YP_002306776.1| tRNA pseudouridine synthase A [Thermococcus onnurineus NA1]
gi|229470756|sp|B6YTJ2.1|TRUA_THEON RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|212008497|gb|ACJ15879.1| tRNA pseudouridine synthase A [Thermococcus onnurineus NA1]
Length = 267
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 127/280 (45%), Gaps = 42/280 (15%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G ++G Q R G++T+EG+I+ AL K G + ED ++
Sbjct: 3 LALRIAYDGTAFYGFQ----------RQPGLRTVEGEIIRALTKLG-IIEDV----ESSN 47
Query: 61 FQRAARTDKGVSALKQIVSLKL---PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNC 117
F+ A+RTD+GVSA +V+ + P+ E +N HL + + +L V + F+ +
Sbjct: 48 FKGASRTDRGVSAFFNVVAFDVASRPDLVRPEVLNFHL-KDVWVLGTAEVPEDFHPRFWA 106
Query: 118 NARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPS 177
++TY Y F D K ++ K + GTH+F F +P
Sbjct: 107 KSKTYRYYLIDAGF----DEKA-----------MRECAKLFIGTHDFSAFARLEPHKNP- 150
Query: 178 CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTF 237
R ++ D + + G +I L +G+SF+ R++V G +++ +EK
Sbjct: 151 -VRELIRADIIK---RQGYYIIEL--EGKSFLWEMARRIVNALRFCGLGILTEEEVEKML 204
Query: 238 -GLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLH 276
G +P A GL+L + Y+ + + G+ ++ H
Sbjct: 205 NGEYSRKIPPARPEGLVLWGIEYEGIEFRGNEKGIRKAKH 244
>gi|11499319|ref|NP_070558.1| tRNA pseudouridine synthase A [Archaeoglobus fulgidus DSM 4304]
gi|3915163|sp|O28544.1|TRUA_ARCFU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|2648818|gb|AAB89516.1| pseudouridylate synthase I (truA) # [Archaeoglobus fulgidus DSM
4304]
Length = 265
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 106/231 (45%), Gaps = 33/231 (14%)
Query: 32 KTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLPEEANKEAI 91
+T+EG+++ AL + G +N + + A RTD GV A Q++S ++ +
Sbjct: 25 RTVEGEVINALRRLGV---------ENPRLRSAGRTDAGVHAYGQVISFYSEDKIFPRML 75
Query: 92 NEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFL 151
N LPE I + +V++ F+ + +R Y+Y D+ ++ +
Sbjct: 76 NAELPEDITAWAWAKVSEDFDPR-RAKSRVYTYVM----------YGSDYDISA-----M 119
Query: 152 QALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLH 211
+ +K+ G H+F NFT K + SC R I+S D ++ E I +I+G +F +
Sbjct: 120 RKAVKELIGVHDFSNFTKKFGEGE-SCVREIISAD-----IRADREFIIFEIEGNAFTWN 173
Query: 212 QIRKMVGVAMAIARGFTSKDLIEKTFGLDQFD--LPMAPGLGLLLEQVHYD 260
+R +V M I + S + ++ + AP GL+L+ V YD
Sbjct: 174 MVRCIVTAIMEIGKQHRSIEWFRDLLNPEKHKERVEPAPPYGLILKDVKYD 224
>gi|255726904|ref|XP_002548378.1| tRNA pseudouridine synthase 3 [Candida tropicalis MYA-3404]
gi|240134302|gb|EER33857.1| tRNA pseudouridine synthase 3 [Candida tropicalis MYA-3404]
Length = 437
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 118/269 (43%), Gaps = 56/269 (20%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A FAY G Y GL + + T+E I++ L K + E + ++
Sbjct: 76 VAFKFAYLGWNYNGLAFQ-------LEPTPLPTVEEIILKTLAKVKLIKE----PIEEVK 124
Query: 61 FQRAARTDKGVSALKQIVSLKL-----------PEEANKEA-----INEHLPEQIRILSI 104
F R RTDKGVSA+ Q++S++L PE +KE +N +LP I++ SI
Sbjct: 125 FSRCGRTDKGVSAMNQVISIELRSNLSKEDQANPELDDKEVDYLSILNANLPSDIKVHSI 184
Query: 105 -KRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHN 163
R + F+++ +C +R Y Y F+ + + Y+G H+
Sbjct: 185 CLRPPEDFDARFSCISRHYRYI---------------FKKQNLDIDLMNQGASLYQGIHD 229
Query: 164 FHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLEL----ITLKIKGQSFMLHQIRKMVGV 219
F NF LD S+ I +F E + L L +KG +F+ HQ+R MV +
Sbjct: 230 FRNFCK----LDG--SKQITNFQRE-IYSSKILHLHDDYYCFDLKGSAFLWHQVRCMVAI 282
Query: 220 AMAIARGFTSKDLIEKTFGLDQFDLPMAP 248
I +G +++ + ++++ P P
Sbjct: 283 LFTIGQGLEKPEIVTELMDMEKY--PTKP 309
>gi|449947841|ref|ZP_21807663.1| tRNA pseudouridine synthase A [Streptococcus mutans 11SSST2]
gi|449999194|ref|ZP_21824364.1| tRNA pseudouridine synthase A [Streptococcus mutans N29]
gi|450028728|ref|ZP_21832351.1| tRNA pseudouridine synthase A [Streptococcus mutans G123]
gi|450098081|ref|ZP_21857802.1| tRNA pseudouridine synthase A [Streptococcus mutans SF1]
gi|450171486|ref|ZP_21884033.1| tRNA pseudouridine synthase A [Streptococcus mutans SM4]
gi|449168197|gb|EMB71030.1| tRNA pseudouridine synthase A [Streptococcus mutans 11SSST2]
gi|449187115|gb|EMB88912.1| tRNA pseudouridine synthase A [Streptococcus mutans N29]
gi|449195287|gb|EMB96617.1| tRNA pseudouridine synthase A [Streptococcus mutans G123]
gi|449221829|gb|EMC21581.1| tRNA pseudouridine synthase A [Streptococcus mutans SF1]
gi|449244031|gb|EMC42425.1| tRNA pseudouridine synthase A [Streptococcus mutans SM4]
Length = 249
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 115/267 (43%), Gaps = 35/267 (13%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G + G Q R ++T++ +I + L + N+ Q ++
Sbjct: 7 IISYDGTNFSGFQ----------RQPQVRTVQEEIEKTLLR--------LNSGQAVKVHG 48
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV A Q++ LP++ + E ++ P+ I ++ +++V F+++ +
Sbjct: 49 AGRTDAGVHAYGQVIHFDLPQQRDLEKLRFGLDTQTPDDIDVIQVEQVADDFHARYQKHR 108
Query: 120 RTYSYTC----PTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+TY + P T +++ F+ ++A +K+ GTH+F FT+ ++
Sbjct: 109 KTYEFLVDLGRPKNPLMRHYATHFPYKV---DFSVVKAAIKKLRGTHDFTGFTASGTSVE 165
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
R I E+ D + G F+ Q+R MVG + I G D I++
Sbjct: 166 NKV-RTISRATVEK---DDKTGFLIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPIDQIDR 221
Query: 236 TF--GLDQFDLPMAPGLGLLLEQVHYD 260
G P A GL L+++ YD
Sbjct: 222 ILESGDRSLAGPTAASNGLYLKEIIYD 248
>gi|66812718|ref|XP_640538.1| tRNA pseudouridine synthase [Dictyostelium discoideum AX4]
gi|60468568|gb|EAL66571.1| tRNA pseudouridine synthase [Dictyostelium discoideum AX4]
Length = 504
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 88/181 (48%), Gaps = 30/181 (16%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+AM+F Y G GY+GL + + +IE I + LF+ G + + + ++
Sbjct: 91 VAMVFGYDGTGYYGLG--------YQVDIKYPSIENLIEKVLFRCGHILPSNVGELKRLK 142
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK----------EAINEHLPEQIRILSIKRVTKG 110
+ ++RTDKGV +L ++S L + N + IN +LP IR+ S +V++
Sbjct: 143 WSHSSRTDKGVHSLATVISCFLVVDDNTFKNDINQTFIDTINNYLPSSIRLFSACKVSRS 202
Query: 111 FNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSK 170
F ++ R+Y+Y P+ + D+ N +L+ + G +++HNFTSK
Sbjct: 203 FQARKKGIERSYNYMVPSEYLNN---------IKIDEMN---KILQNFIGINSYHNFTSK 250
Query: 171 R 171
R
Sbjct: 251 R 251
Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 180 RYIMSFDCEQPFVK-DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFG 238
R I SF E ++ G I G+SF+L+QIR+MVG ++I +G+++ + +E +
Sbjct: 311 RNIKSFYVENEIIEIKGKGWYKFVIIGESFILYQIRRMVGFFLSIVKGYSTVEALELSLK 370
Query: 239 LD-QFDLPMAPGLGLLLEQVHYD 260
+P AP L L V +D
Sbjct: 371 SPFSICVPTAPPFPLYLFNVKFD 393
>gi|116754296|ref|YP_843414.1| tRNA pseudouridine synthase A [Methanosaeta thermophila PT]
gi|121692939|sp|A0B7V0.1|TRUA_METTP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|116665747|gb|ABK14774.1| tRNA pseudouridine synthase A [Methanosaeta thermophila PT]
Length = 267
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 109/270 (40%), Gaps = 60/270 (22%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G Y+G Q R G++T+E + +AL + G D
Sbjct: 3 IALKIAYLGDRYYGFQ----------RQPGLRTVESVMRDALLRIGVANGD--------- 43
Query: 61 FQRAARTDKGVSALKQIVSLKLPEE----ANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
F A RTD+GVSAL Q++ + E+ A IN LP + + GF+++ +
Sbjct: 44 FCYAGRTDRGVSALGQVIDFWIEEDRAYLAFPRVINSLLPSDVWAWARAVAPVGFSARWS 103
Query: 117 CNARTYSYTCPTYAFATPQDTKDDFRLTPD-QFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
R Y Y F +PD + ++ GTH+F NF+ +
Sbjct: 104 ALWREYRY----------------FLFSPDIDLSAVREAAGHLVGTHDFRNFSMSKV--- 144
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
R I+S D V ++ ++ + F+ + +R++VG I G D I
Sbjct: 145 -DTVRRIISID-----VNAHCGIVVFDVRAEGFIWNMVRRIVGALELIGIGEKPVDWI-- 196
Query: 236 TFGLDQFD------LPMAPGLGLLLEQVHY 259
L+ D P AP GL+L V Y
Sbjct: 197 ---LELLDPSTPHGAPTAPPEGLMLMDVGY 223
>gi|387207441|gb|AFJ69057.1| trna pseudouridine synthase family protein, partial
[Nannochloropsis gaditana CCMP526]
Length = 138
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 51/83 (61%)
Query: 195 GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLL 254
GLE + + + GQ+F+LHQIRKMV VA+ ++RG LIE + LPMAP GL L
Sbjct: 7 GLEWVCVTLTGQAFLLHQIRKMVAVAIMVSRGSAPATLIEDAYQDVMLTLPMAPSEGLYL 66
Query: 255 EQVHYDLYNQKYGQDGMHESLHF 277
++ + LYNQ+ Q G SL +
Sbjct: 67 DKASFALYNQRATQIGQAASLDW 89
>gi|433589693|ref|YP_007279189.1| pseudouridylate synthase [Natrinema pellirubrum DSM 15624]
gi|448332712|ref|ZP_21521941.1| tRNA pseudouridine synthase A [Natrinema pellirubrum DSM 15624]
gi|433304473|gb|AGB30285.1| pseudouridylate synthase [Natrinema pellirubrum DSM 15624]
gi|445625687|gb|ELY79042.1| tRNA pseudouridine synthase A [Natrinema pellirubrum DSM 15624]
Length = 279
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 115/267 (43%), Gaps = 42/267 (15%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G Y G Q + + T+E I +AL + D+ + P +
Sbjct: 5 AFRIAYDGTDYHGFQRQP--------QPDVPTVEDAIFDALRDLSVLEPDA-DKPAG--Y 53
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSAL Q ++L+ P+ A+N LP +R + F++ ++ R
Sbjct: 54 AAAGRTDAGVSALAQTIALEAPDWLAPRALNGRLPADVRAWAAADAPSDFHATHHATRRA 113
Query: 122 YSYTCPTYAFATPQDTK---DDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSC 178
Y+Y YA AT D DD D+F+ A + GTH+ N T P D +
Sbjct: 114 YTYHL--YAPATETDGAPAVDD-----DRFH---AACEALSGTHDVRNLT----PDDHNT 159
Query: 179 SRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFG 238
R ++ E +DG + I L + F +R++V +A A+ G ++ I++
Sbjct: 160 ERS-LTLAAE----RDG-DYIVLTVAAGGFSRELVRRLVSLARAVGTGDAPREKIDRV-- 211
Query: 239 LDQFDLP------MAPGLGLLLEQVHY 259
L+ LP AP L+L V Y
Sbjct: 212 LEPEPLPGHEGIAPAPPEPLVLTDVRY 238
>gi|296206475|ref|XP_002750239.1| PREDICTED: tRNA pseudouridine synthase-like 1, partial [Callithrix
jacchus]
Length = 301
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 125/277 (45%), Gaps = 34/277 (12%)
Query: 15 LQSKYLFFLIFCRN--QGMKTIEGDIMEALFKAGFVTE--DSFNTPQNIQFQRAARTDKG 70
++++YL +L + G+ + G A+ ++ E + N+ + ++F ++RTD G
Sbjct: 8 VRARYLVYLQYVGTDFNGVAAVRG-AQRAVGVQNYLEEAAERLNSVEPVRFTISSRTDAG 66
Query: 71 VSALKQIVSLKL---------PEEANKEAINEHLPE-QIRILSIKRVTKGFNSKNNCNAR 120
V AL L + P E EA+N HL IR+L RV F++++ +R
Sbjct: 67 VHALSNAAHLDVQRRSGRPPFPPEVLTEALNTHLRHPAIRVLRAFRVPSDFHARHAATSR 126
Query: 121 TYSYTCPTYAFATPQ----DTKDDFRLTPDQFNF--LQALLKQYEGTHNFHNFTSKRKPL 174
TY Y T + + + + L D+ + +Q + GTH+F F S P+
Sbjct: 127 TYLYRLVTGCHRSDELPVFERNLCWALRADRLDVAAMQEAAQHLLGTHDFSAFQSAGSPV 186
Query: 175 DPSCSRYI----MSFDCEQPFV----KDGLELITLKIKGQSFMLHQIRKMVGVAMAIARG 226
PS R + +S P V L+ +L+ + QSF+ Q+R+M V +A+ G
Sbjct: 187 -PSPVRTLRRVSVSPGLTSPLVTPQESRKLQFWSLEFESQSFLYRQVRRMTAVLVAVGLG 245
Query: 227 FTS----KDLIEKTFGLDQFDLPMAPGLGLLLEQVHY 259
+ K ++E L + +AP GL L+ V Y
Sbjct: 246 ALAPAQVKTILESQDPLGKHQTRLAPAHGLFLKSVVY 282
>gi|332208632|ref|XP_003253411.1| PREDICTED: tRNA pseudouridine(38/39) synthase isoform 1 [Nomascus
leucogenys]
Length = 481
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 117/290 (40%), Gaps = 70/290 (24%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K V + Q
Sbjct: 65 VALRIAYMGWGYQGFASQ---------ENTNNTIEEKLFEALTKTRLV-----ESRQTSN 110
Query: 61 FQRAARTDKGVSALKQIVSLKL----PEEANKE-------------------AINEHLPE 97
+ R RTDKGVSA Q++SL L P E +N LP
Sbjct: 111 YHRCGRTDKGVSAFGQVISLDLRSQFPRGRESEDFNVKEEANAAAEEIRYTHILNRVLPP 170
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IRIL+ V F+++ +C RTY Y P + D + + ++
Sbjct: 171 DIRILAWAPVEPSFSARFSCLERTYRYFFP----------RADLDIVT-----MDYAAQK 215
Query: 158 YEGTHNFHNFTSKRKPLDPSCS-----RYIMSFDCE-------QPFVKDGLELITLKIKG 205
Y GTH+F N +D + R I+S + + ++ +L ++ G
Sbjct: 216 YVGTHDFRNLCK----MDVANGVVNFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTG 271
Query: 206 QSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
Q+F+ HQ+R M+ + I +G +LI++ +++ P P + +E
Sbjct: 272 QAFLYHQVRCMMAILFLIGQGMEKPELIDELLNIEKN--PQKPQYSMAVE 319
>gi|126302589|sp|Q9BZE2.3|PUS3_HUMAN RecName: Full=tRNA pseudouridine(38/39) synthase; AltName:
Full=tRNA pseudouridine synthase 3; AltName: Full=tRNA
pseudouridylate synthase 3; AltName: Full=tRNA-uridine
isomerase 3
gi|12276176|gb|AAG50280.1|AF325689_1 FKSG32 [Homo sapiens]
gi|189055315|dbj|BAG36917.1| unnamed protein product [Homo sapiens]
Length = 481
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 118/290 (40%), Gaps = 70/290 (24%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K V + Q
Sbjct: 65 VALRIAYMGWGYQGFASQ---------ENTNNTIEEKLFEALTKTRLV-----ESRQTSN 110
Query: 61 FQRAARTDKGVSALKQIVSLKL----PEEANKE-------------------AINEHLPE 97
+ R RTDKGVSA Q++SL L P + E +N LP
Sbjct: 111 YHRCGRTDKGVSAFGQVISLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPP 170
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IRIL+ V F+++ +C RTY Y P + D + + ++
Sbjct: 171 DIRILAWAPVEPSFSARFSCLERTYRYFFP----------RADLDIVT-----MDYAAQK 215
Query: 158 YEGTHNFHNFTSKRKPLDPSCS-----RYIMSFDCE-------QPFVKDGLELITLKIKG 205
Y GTH+F N +D + R I+S + + ++ +L ++ G
Sbjct: 216 YVGTHDFRNLCK----MDVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTG 271
Query: 206 QSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
Q+F+ HQ+R M+ + I +G ++I++ +++ P P + +E
Sbjct: 272 QAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEKN--PQKPQYSMAVE 319
>gi|114641137|ref|XP_001148378.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Pan troglodytes]
gi|410211820|gb|JAA03129.1| pseudouridylate synthase 3 [Pan troglodytes]
gi|410257886|gb|JAA16910.1| pseudouridylate synthase 3 [Pan troglodytes]
gi|410299778|gb|JAA28489.1| pseudouridylate synthase 3 [Pan troglodytes]
gi|410328501|gb|JAA33197.1| pseudouridylate synthase 3 [Pan troglodytes]
Length = 481
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 118/290 (40%), Gaps = 70/290 (24%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K V + Q
Sbjct: 65 VALRIAYMGWGYQGFASQ---------ENTNNTIEEKLFEALTKTRLV-----ESRQTSN 110
Query: 61 FQRAARTDKGVSALKQIVSLKL----PEEANKE-------------------AINEHLPE 97
+ R RTDKGVSA Q++SL L P + E +N LP
Sbjct: 111 YHRCGRTDKGVSAFGQVISLDLRSHFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPP 170
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IRIL+ V F+++ +C RTY Y P + D + + ++
Sbjct: 171 DIRILAWAPVEPSFSARFSCLERTYRYFFP----------RADLDIVT-----MDYAAQK 215
Query: 158 YEGTHNFHNFTSKRKPLDPSCS-----RYIMSFDCE-------QPFVKDGLELITLKIKG 205
Y GTH+F N +D + R I+S + + ++ +L ++ G
Sbjct: 216 YVGTHDFRNLCK----MDVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTG 271
Query: 206 QSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
Q+F+ HQ+R M+ + I +G ++I++ +++ P P + +E
Sbjct: 272 QAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEKN--PQKPQYSMAVE 319
>gi|354610208|ref|ZP_09028164.1| tRNA pseudouridine synthase A [Halobacterium sp. DL1]
gi|353195028|gb|EHB60530.1| tRNA pseudouridine synthase A [Halobacterium sp. DL1]
Length = 264
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 110/265 (41%), Gaps = 47/265 (17%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G Y+G Q R + T+E ++ AL + D F + +
Sbjct: 5 AFRVAYDGRPYYGFQ----------RQPDVTTVEDELFGALRRL-----DVFEGEKPPGY 49
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSA Q ++ P+ A+N LP + + F++ ++ N R
Sbjct: 50 AAAGRTDAGVSARAQTIAFDAPDWLVPSALNTELPGPVDAWASADAPPDFHATHDANWRE 109
Query: 122 YSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRY 181
YSY +P+ DD R + L + G H+FHN T P D + R
Sbjct: 110 YSYY-----LLSPE--ADDSR--------GRRALDRLTGEHDFHNLT----PDDRNTVRA 150
Query: 182 IM-SFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD 240
+ S CE F + L ++ + F +R++V + +A G S D I++ G +
Sbjct: 151 LSGSLVCEGDF-------LVLTLRAEGFCRELVRRVVSLVREVAAG-ASFDRIDQLLGSE 202
Query: 241 QFD----LPMAPGLGLLLEQVHYDL 261
D +P A L+L V YDL
Sbjct: 203 PVDGRAGVPPADPHPLVLHDVDYDL 227
>gi|14919399|gb|AAH04822.1| Pseudouridylate synthase 3 [Homo sapiens]
gi|124000287|gb|ABM87652.1| pseudouridylate synthase 3 [synthetic construct]
gi|124000289|gb|ABM87653.1| pseudouridylate synthase 3 [synthetic construct]
gi|157928602|gb|ABW03597.1| pseudouridylate synthase 3 [synthetic construct]
gi|157929242|gb|ABW03906.1| pseudouridylate synthase 3 [synthetic construct]
Length = 481
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 118/290 (40%), Gaps = 70/290 (24%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K V + Q
Sbjct: 65 VALRIAYMGWGYQGFASQ---------ENTNNTIEEKLFEALTKTRLV-----ESRQTSN 110
Query: 61 FQRAARTDKGVSALKQIVSLKL----PEEANKE-------------------AINEHLPE 97
+ R RTDKGVSA Q++SL L P + E +N LP
Sbjct: 111 YHRCGRTDKGVSAFGQVISLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPP 170
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IRIL+ V F+++ +C RTY Y P + D + + ++
Sbjct: 171 DIRILAWAPVEPSFSARFSCLERTYRYFFP----------RADLDIVT-----MDYAAQK 215
Query: 158 YEGTHNFHNFTSKRKPLDPSCS-----RYIMSFDCE-------QPFVKDGLELITLKIKG 205
Y GTH+F N +D + R I+S + + ++ +L ++ G
Sbjct: 216 YVGTHDFRNLCK----MDVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTG 271
Query: 206 QSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
Q+F+ HQ+R M+ + I +G ++I++ +++ P P + +E
Sbjct: 272 QAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEKN--PQKPQYSMAVE 319
>gi|199559785|ref|NP_112597.3| tRNA pseudouridine(38/39) synthase isoform 1 [Homo sapiens]
Length = 481
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 118/290 (40%), Gaps = 70/290 (24%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K V + Q
Sbjct: 65 VALRIAYMGWGYQGFASQ---------ENTNNTIEEKLFEALTKTRLV-----ESRQTSN 110
Query: 61 FQRAARTDKGVSALKQIVSLKL----PEEANKE-------------------AINEHLPE 97
+ R RTDKGVSA Q++SL L P + E +N LP
Sbjct: 111 YHRCGRTDKGVSAFGQVISLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPP 170
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IRIL+ V F+++ +C RTY Y P + D + + ++
Sbjct: 171 DIRILAWAPVEPSFSARFSCLERTYRYFFP----------RADLDIVT-----MDYAAQK 215
Query: 158 YEGTHNFHNFTSKRKPLDPSCS-----RYIMSFDCE-------QPFVKDGLELITLKIKG 205
Y GTH+F N +D + R I+S + + ++ +L ++ G
Sbjct: 216 YVGTHDFRNLCK----MDVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTG 271
Query: 206 QSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
Q+F+ HQ+R M+ + I +G ++I++ +++ P P + +E
Sbjct: 272 QAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEKN--PQKPQYSMAVE 319
>gi|119588071|gb|EAW67667.1| pseudouridylate synthase 3 [Homo sapiens]
Length = 481
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 118/290 (40%), Gaps = 70/290 (24%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K V + Q
Sbjct: 65 VALRIAYMGWGYQGFASQ---------ENTNNTIEEKLFEALTKTRLV-----ESRQTSN 110
Query: 61 FQRAARTDKGVSALKQIVSLKL----PEEANKE-------------------AINEHLPE 97
+ R RTDKGVSA Q++SL L P + E +N LP
Sbjct: 111 YHRCGRTDKGVSAFGQVISLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPP 170
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IRIL+ V F+++ +C RTY Y P + D + + ++
Sbjct: 171 DIRILAWAPVEPSFSARFSCLERTYRYFFP----------RADLDIVT-----MDYAAQK 215
Query: 158 YEGTHNFHNFTSKRKPLDPSCS-----RYIMSFDCE-------QPFVKDGLELITLKIKG 205
Y GTH+F N +D + R I+S + + ++ +L ++ G
Sbjct: 216 YVGTHDFRNLCK----MDVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTG 271
Query: 206 QSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
Q+F+ HQ+R M+ + I +G ++I++ +++ P P + +E
Sbjct: 272 QAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEKN--PQKPQYSMAVE 319
>gi|261417639|ref|YP_003251321.1| tRNA pseudouridine synthase A [Geobacillus sp. Y412MC61]
gi|319765297|ref|YP_004130798.1| tRNA pseudouridine synthase A [Geobacillus sp. Y412MC52]
gi|261374096|gb|ACX76839.1| tRNA pseudouridine synthase A [Geobacillus sp. Y412MC61]
gi|317110163|gb|ADU92655.1| tRNA pseudouridine synthase A [Geobacillus sp. Y412MC52]
Length = 258
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 114/270 (42%), Gaps = 45/270 (16%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ AY G + G Q + G +T++G++ E L + + + ++
Sbjct: 8 IIAYDGTHFSGYQIQ----------PGKRTVQGELEEVLRR--------MHKGKGVRVAA 49
Query: 64 AARTDKGVSALKQIV----SLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
+ RTD GV A Q++ SL L E K+A+N LP+ I + ++ F+++ + A
Sbjct: 50 SGRTDAGVHAYGQVIHFDTSLSLSSEQWKKALNAQLPDDIVVRFVQEADADFHARFSAKA 109
Query: 120 RTYSYTCPTYAFATPQDTKDDFRL-------TPDQFNFLQALLKQYEGTHNFHNFTSKRK 172
+ Y Y T A +D FR P + + L+ + GTH+F +F S +
Sbjct: 110 KEYRYKVWTAA------ERDVFRRHYCAWHPYPLHMDAMNEALRLFCGTHDFTSFCSAKT 163
Query: 173 PL-DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKD 231
+ D + Y + P ++ + G F+ + +R MVG + I +G S
Sbjct: 164 TIEDRVRTIYRAKVKVDGP-------MLEFRFVGSGFLYNMVRIMVGTVLEIGQGKRSPA 216
Query: 232 LIEKTFGLDQFDL--PMAPGLGLLLEQVHY 259
I L P AP GL L +V+Y
Sbjct: 217 DISTLLAAKDRRLAGPTAPAEGLYLWRVYY 246
>gi|340724310|ref|XP_003400525.1| PREDICTED: tRNA pseudouridine synthase 3-like [Bombus terrestris]
Length = 424
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/319 (22%), Positives = 125/319 (39%), Gaps = 61/319 (19%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ + F Y G Y G F++ + TIE + EAL K+ + + +
Sbjct: 73 ILLKFYYLGWNYNG-------FVV--QESTDNTIEEHLFEALIKSCCI-----ESRETSN 118
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKE-------------AINEHLPEQIRILSIKRV 107
+ R RTDKGVS+ Q++S+ L + N E +N LP IR ++
Sbjct: 119 YHRCGRTDKGVSSFSQVISIDLRSKLNPEDQCKLEDELPYCKILNRLLPSNIRCIAWCPA 178
Query: 108 TKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNF 167
+ F+++ NC RTY Y P + + +K G H+F N
Sbjct: 179 SSNFSARFNCKFRTYKYFFPRGNL---------------NIDSMDKAVKYTIGEHDFRNI 223
Query: 168 TS----------KRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMV 217
+RK +D Y F G ++ L I Q+F+ HQIR ++
Sbjct: 224 CKMDVANGVTNYQRKVIDAKVCLYRRDFR-----NISGYDVCQLIITSQAFLWHQIRCLM 278
Query: 218 GVAMAIARGFTSKDLIEKTFGLDQF----DLPMAPGLGLLLEQVHYDLYNQKYGQDGMHE 273
GV I +G ++I + ++++ +A + L L YD +D +
Sbjct: 279 GVLFLIGQGNEKPEIILELLDIEKYPRKPQYNLAHEIPLNLWYCEYDTMEWYIDKDELIN 338
Query: 274 SLHFHEVDKEVNEFRHKFI 292
++ F + D +N + I
Sbjct: 339 TIKFLQRDWTLNTVKSVMI 357
>gi|242398608|ref|YP_002994032.1| tRNA pseudouridine synthase A [Thermococcus sibiricus MM 739]
gi|259550478|sp|C6A238.1|TRUA_THESM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|242265001|gb|ACS89683.1| tRNA pseudouridine synthase A [Thermococcus sibiricus MM 739]
Length = 266
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 138/315 (43%), Gaps = 59/315 (18%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G ++G Q R ++T+EG++++ L K G + ED +
Sbjct: 3 IALKIAYDGTKFYGFQ----------RQPDLRTVEGELIKVLKKLG-IIEDV----KEAN 47
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F+ A+RTD+GVSAL +++ PE A +N HL I IL V + F+ +
Sbjct: 48 FKGASRTDRGVSALGNVIAFNTAKPELAEARILNHHL-RDIWILGKAEVPEDFHPRFWAK 106
Query: 119 ARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSK---RKPLD 175
+ Y Y Y F D L+A + + G H+F NF RKP+
Sbjct: 107 NKIYRY----YLFDEGIDVIK-----------LKACAEAFLGRHDFSNFARLEEFRKPV- 150
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
R I D F + +I ++I+G+SF+ R+++ G S +E
Sbjct: 151 ----REINRIDV---FSRG--RIIVVEIEGKSFLWEMTRRIITALKLCGLGVLSIGDVEL 201
Query: 236 TFGLDQFD--LPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFIL 293
++ D LP AP L+L +V Y +G+ + + ++K EF +F
Sbjct: 202 MLK-EKVDKKLPPAPPENLVLWEVGY---------EGIKFEVDAYAIEKVKREFLERF-R 250
Query: 294 PYLVKTEITEKPMLA 308
YL K+ I E +++
Sbjct: 251 KYLTKSAILEDWLIS 265
>gi|16550495|dbj|BAB70990.1| unnamed protein product [Homo sapiens]
Length = 481
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 118/290 (40%), Gaps = 70/290 (24%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K V + Q
Sbjct: 65 VALRIAYMGWGYQGFASQ---------ENTNNTIEEKLFEALTKTRLV-----ESRQTSN 110
Query: 61 FQRAARTDKGVSALKQIVSLKL----PEEANKE-------------------AINEHLPE 97
+ R RTDKGVSA Q++SL L P + E +N LP
Sbjct: 111 YHRCGRTDKGVSAFGQVISLDLRSQFPRGRDSEDLNVKEEANAAAEEIRYTHILNRVLPP 170
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IRIL+ V F+++ +C RTY Y P + D + + ++
Sbjct: 171 DIRILAWAPVEPSFSARFSCLERTYRYFFP----------RADLDIVT-----MDYAAQK 215
Query: 158 YEGTHNFHNFTSKRKPLDPSCS-----RYIMSFDCE-------QPFVKDGLELITLKIKG 205
Y GTH+F N +D + R I+S + + ++ +L ++ G
Sbjct: 216 YVGTHDFRNLCK----MDVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTG 271
Query: 206 QSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
Q+F+ HQ+R M+ + I +G ++I++ +++ P P + +E
Sbjct: 272 QAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEKN--PQKPQYSMAVE 319
>gi|154149764|ref|YP_001403382.1| tRNA pseudouridine synthase ACD [Methanoregula boonei 6A8]
gi|153998316|gb|ABS54739.1| tRNA pseudouridine synthase A [Methanoregula boonei 6A8]
Length = 276
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 116/274 (42%), Gaps = 48/274 (17%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A +Y G ++G Q + + +T+EG+ +EA + F+ +
Sbjct: 17 LACRVSYLGTRFYGSQQQ----------ESSRTVEGEFIEACRRLAL-----FSDWRTAG 61
Query: 61 FQRAARTDKGVSALKQIV--SLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F A RTD+GV A Q++ S + P+ A ++A+N LP I + V F+ + +
Sbjct: 62 FASAGRTDRGVHACGQVIAFSTQTPDRA-RQALNSQLPPDIWCTATAVVPDHFHPRYDAR 120
Query: 119 ARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSC 178
+RTY Y Y P+D ++ +++ G HNF NF + D +
Sbjct: 121 SRTYRY----YFGEPPRDPVA-----------METAAREFSGDHNFTNFA---RVGDKNP 162
Query: 179 SRYIMSFDCEQPFVKDGLE--LITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKT 236
R I+ ++ G E L++K QSF+ HQ+R M A++ G D I
Sbjct: 163 WRKILE-------IRIGTEGSFTYLEVKAQSFLWHQVRCMAAAALSAGMGEQDADGIRLL 215
Query: 237 FGLDQFDLPM--APGLGLLLEQVHYDLYNQKYGQ 268
+ P+ AP GL+L L G+
Sbjct: 216 LN-EAASRPIQPAPAEGLVLWDTDCGLTWDPVGK 248
>gi|146093784|ref|XP_001467003.1| putative pseudouridine synthase A-like protein [Leishmania infantum
JPCM5]
gi|134071367|emb|CAM70054.1| putative pseudouridine synthase A-like protein [Leishmania infantum
JPCM5]
Length = 499
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 126/309 (40%), Gaps = 54/309 (17%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G + GL + + T+EG + +AL + + ED P N
Sbjct: 62 IALRLAYHGHVHDGLAKQ---------KETDNTVEGLVCDALRRLRLIPEDG---PHN-- 107
Query: 61 FQRAARTDKGVSALKQIVSL------------KLPEEANKEAINEHLPEQIRILSIKRVT 108
F R RTDKGVSAL +SL +LP +N LP IRI+ V
Sbjct: 108 FGRCGRTDKGVSALGNALSLTARASCTADAEPQLPPLDYCSMLNNVLPSTIRIVGCALVD 167
Query: 109 KGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFT 168
F+++ +C RTY Y Y F + +Q + GTHNF NF
Sbjct: 168 DTFDARFSCVHRTYRY----YFFHRGLN-----------LEAMQEAAAFFLGTHNFRNFC 212
Query: 169 SKRKPLDPSCSRYIMSFDCEQPFVKDGL-ELIT-LKIKGQSFMLHQIRKMVGVAMAIARG 226
+ R + S + L ELI+ L+I+ SF+ HQIR ++ V + RG
Sbjct: 213 KMDVVNVSNFVRTVFSVGLHP---SEALPELISYLEIRANSFLYHQIRCIMEVLFLVGRG 269
Query: 227 FTSKDLIEKTF--GLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEV 284
+++ G + P+A G L+L +D + FH +++E+
Sbjct: 270 LEVPSVVQTLLERGDRKPTYPLADGTPLVLWDCGFDNVQWQMSH------CAFHAMEQEL 323
Query: 285 NEFRHKFIL 293
+ ++
Sbjct: 324 QDISTALLI 332
>gi|348573933|ref|XP_003472745.1| PREDICTED: tRNA pseudouridine synthase 3-like [Cavia porcellus]
Length = 480
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 119/287 (41%), Gaps = 64/287 (22%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EA+ K + + Q
Sbjct: 65 VALRIAYLGWGYQGFASQ---------ENTDNTIEEKLFEAMTKTRLI-----ESRQTSS 110
Query: 61 FQRAARTDKGVSALKQIVSL---------------KLPEEANKEA--------INEHLPE 97
+ R RTDKGVSA Q++SL L E + +A +N LP
Sbjct: 111 YHRCGRTDKGVSAFGQVISLDLRSQFPRGKDSEDLNLKNEVSDDAKEIRYTHILNRVLPP 170
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IR+L+ V F+++ +C RTY Y P D R+ N+ ++
Sbjct: 171 DIRVLAWAPVEPSFSARFSCLERTYRYFFPLADL-------DIVRM-----NYAA---QK 215
Query: 158 YEGTHNFHNFTSK---------RKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSF 208
Y GTH+F N ++ + + R + C + + ++ +L ++ GQ+F
Sbjct: 216 YVGTHDFRNLCKMDVANGVINFQRTILSAEVRLVGQSLCAESW-QEPFQLCQFEVTGQAF 274
Query: 209 MLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
+ HQ+R M+ V I +G +I++ +++ P P + +E
Sbjct: 275 LYHQVRCMMAVLFLIGQGMEEPQVIDELLNIEKN--PQKPQYSMAVE 319
>gi|449529415|ref|XP_004171695.1| PREDICTED: putative tRNA pseudouridine synthase-like [Cucumis
sativus]
Length = 421
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 77/151 (50%), Gaps = 19/151 (12%)
Query: 34 IEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKL--PEEAN---- 87
IE ++ +A++KAG + + ++ I + R++RTDKGV +L ++LK+ P A
Sbjct: 14 IEQELEDAIYKAGGICDSNYGNLNKISWARSSRTDKGVHSLATTITLKMEIPGSAWIDDP 73
Query: 88 -----KEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATP---QDTKD 139
+ IN +LP+ I++ I K F+ + C+ R YSY P + T+
Sbjct: 74 CGISLADYINSYLPDNIKVFGIVPAQKRFDPRKECDVRMYSYLLPAKLIGIESKLKTTEI 133
Query: 140 DFRLTPDQFNFLQALLKQYEGTHNFHNFTSK 170
D ++ + +LK +EG H FHN+T +
Sbjct: 134 DCHISD-----FKDILKSFEGDHPFHNYTVR 159
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 70/145 (48%), Gaps = 10/145 (6%)
Query: 180 RYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGL 239
R I+ C + G + I + I G+SFMLHQIRKM+ A+A+ R +D+I T L
Sbjct: 258 RRILYCSCGKLETYFGCDFIEISIWGESFMLHQIRKMIATAVAVKRKLLPRDII--TLSL 315
Query: 240 DQFD---LPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVD---KEVNEFRHKFIL 293
+F LP+AP L+L + ++ G E +E D VNEF IL
Sbjct: 316 TKFSRIVLPIAPAEVLVLRGNSFS-NRKRPGAPMRSELFTLNESDDIVNSVNEFYRSAIL 374
Query: 294 PYLVKTEITEKPMLA-WLELLADHS 317
P + K TE P W+E L ++
Sbjct: 375 PEVTKFLDTESPPWKEWVEKLDKYT 399
>gi|395520653|ref|XP_003764440.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Sarcophilus
harrisii]
Length = 506
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K V + Q
Sbjct: 95 VALRIAYLGWGYQGFASQ---------ENTNNTIEEKLFEALTKTRLV-----ESRQTSN 140
Query: 61 FQRAARTDKGVSALKQIVSLKL---------PEEAN-KEAINEH-------------LPE 97
+ R RTDKGVSA Q++SL L PE+ + K++IN+ LP
Sbjct: 141 YHRCGRTDKGVSAFGQVISLNLRSQLIGSKKPEDQSLKDSINDTVEEIRYTHILNRVLPP 200
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IR+L+ V F+++ +C RTY Y P D D ++
Sbjct: 201 DIRVLAWAPVEPSFSARFSCLERTYRYFFPCADL--------DIEAMND-------AAQK 245
Query: 158 YEGTHNFHNFTSKRKPLDPSC-----SRYIMSFDCEQPFVKD---------GLELITLKI 203
Y GTH+F N +D + R I+S + + ++D +L ++
Sbjct: 246 YVGTHDFRNLCK----MDVANGVINFQRTILSANVQLVALRDLEEKLQQQEPFQLCQFEV 301
Query: 204 KGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
GQ+F+ HQ+R M+ + I + ++I++ +++ P P + +E
Sbjct: 302 IGQAFLYHQVRCMMAILFLIGQRMEKPEIIDELLNIEKN--PQKPQYSMAVE 351
>gi|345858432|ref|ZP_08810825.1| tRNA pseudouridine synthase A [Desulfosporosinus sp. OT]
gi|344328451|gb|EGW39836.1| tRNA pseudouridine synthase A [Desulfosporosinus sp. OT]
Length = 263
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 112/275 (40%), Gaps = 48/275 (17%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ + AY G Y G Q + + TI+G +EA++K V E+ +
Sbjct: 4 IRLTVAYDGTNYHGFQRQDQTY--------GPTIQGT-LEAVWKK-LVEEE-------VT 46
Query: 61 FQRAARTDKGVSALKQIVSL----KLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
A RTD GV A Q+V+ ++PEE +A N LP IRIL + V FN++ +
Sbjct: 47 LATAGRTDAGVHASGQVVNFMTAARIPEEKIPKAFNSLLPRDIRILQAESVPHDFNARWS 106
Query: 117 CNARTYSYTCPT----------YAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHN 166
+ Y Y YA P P N +QA +EG HNF
Sbjct: 107 AKWKRYDYQIDNHRIPNVFLRLYASHVP---------IPLNVNQMQAAASLFEGHHNFKT 157
Query: 167 FTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARG 226
F + + R I + C+ VK+ +I + G F+ H +R MVG M + +G
Sbjct: 158 FAAA-GGASKTFERTI--YRCQ---VKEDKGIIRVSCVGNGFLYHMVRIMVGTLMDVGKG 211
Query: 227 FTSKDLIEKTFGLDQFDLP--MAPGLGLLLEQVHY 259
I + + +AP GL L V+Y
Sbjct: 212 RILSQEIPEIIASQERKRARIIAPAHGLTLAYVNY 246
>gi|157872401|ref|XP_001684749.1| putative pseudouridine synthase A-like protein [Leishmania major
strain Friedlin]
gi|68127819|emb|CAJ06260.1| putative pseudouridine synthase A-like protein [Leishmania major
strain Friedlin]
Length = 498
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 84/331 (25%), Positives = 132/331 (39%), Gaps = 55/331 (16%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G + GL + + T+EG + +AL + + ED P N
Sbjct: 62 IALRLAYHGHVHDGLAKQ---------KETDNTVEGLVCDALRRLRLIPEDG---PHN-- 107
Query: 61 FQRAARTDKGVSALKQIVSL------------KLPEEANKEAINEHLPEQIRILSIKRVT 108
F R RTDKGVSAL SL +LP +N LP IRI+ V
Sbjct: 108 FGRCGRTDKGVSALGNAFSLTARASCTGDAEPQLPPLDYCSMLNNVLPSTIRIVGCALVD 167
Query: 109 KGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFT 168
F+++ +C RTY Y Y F + +Q + GTHNF NF
Sbjct: 168 DAFDARFSCVHRTYRY----YFFHRGLN-----------LAAMQEAAAFFLGTHNFRNFC 212
Query: 169 SKRKPLDPSCSRYIMSFDCEQPFVKDGL-ELIT-LKIKGQSFMLHQIRKMVGVAMAIARG 226
+ R + S + L ELI+ L+I+ SF+ HQIR ++ V + RG
Sbjct: 213 KMDVVNVSNFVRTVFSVGLHP---SEALPELISYLEIRANSFLYHQIRCIMEVLFLVGRG 269
Query: 227 FTSKDLIEKT--FGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEV 284
+++ G + P+A G L+L +D + FH +++E+
Sbjct: 270 LEVPSVVQTLLELGDRKPTYPLADGTPLILWDCGFDNVQWQMSH------CAFHAMEQEL 323
Query: 285 NEFRHKFILPYLVKTEITEKPMLAWLELLAD 315
+ ++ T + + + W AD
Sbjct: 324 QDIGTALLIRATSATAMRSQ-LFRWYTGTAD 353
>gi|339491268|ref|YP_004705773.1| tRNA pseudouridine synthase A [Leuconostoc sp. C2]
gi|338852940|gb|AEJ31150.1| tRNA pseudouridine synthase A [Leuconostoc sp. C2]
Length = 256
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 123/275 (44%), Gaps = 44/275 (16%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRN--QGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
+ +Y G G+FG Q + +N + +T++G++ +A V + + + I+
Sbjct: 7 IVSYDGSGFFGFQVQ-------TKNGIERQRTVQGELTKA------VNQMAKKPTEPIKV 53
Query: 62 QRAARTDKGVSALKQIVSLKLPEEAN----KEAINEHLPEQIRILSIKRVTKGFNSKNNC 117
A+RTD GV A Q+V LP + N ++ +N LP + I + +VT F+++ N
Sbjct: 54 VGASRTDTGVHAFGQVVHFDLPFDINENGVRKGLNTLLPRDMLIKQVDKVTPDFHARFNT 113
Query: 118 NARTYSYTCPTYAFATP--QDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+A+ Y Y T F P + F+ D +++ L G H+F +F +
Sbjct: 114 HAKRYIYRVSTQDFTDPFKRQYTGHFQWHLD-IERIKSALPDLLGEHDFASFAASGNQTA 172
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARG--------- 226
+ + +P D EL+ +G +F+ +QIR MVGV + I G
Sbjct: 173 TTIRTITRADVTIKP---DDQELV-FTFEGNAFLYNQIRIMVGVLLEIGNGRRDVHDILR 228
Query: 227 -FTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYD 260
T KD + F AP GL L+Q++Y+
Sbjct: 229 LITVKDREQARF--------TAPASGLYLDQIYYN 255
>gi|157822367|ref|NP_001101604.1| tRNA pseudouridine synthase 3 [Rattus norvegicus]
gi|149027806|gb|EDL83266.1| pseudouridylate synthase 3 (predicted) [Rattus norvegicus]
gi|165971639|gb|AAI58694.1| Pseudouridylate synthase 3 [Rattus norvegicus]
Length = 479
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 114/292 (39%), Gaps = 74/292 (25%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K V + Q
Sbjct: 64 VALKIAYLGWGYQGFASQ---------ENTSNTIEEKLFEALIKTRLV-----ESRQTSN 109
Query: 61 FQRAARTDKGVSALKQIVSLKL----PEEANKE-------------------AINEHLPE 97
+ R RTDKGVSA Q++SL L P + E +N LP
Sbjct: 110 YHRCGRTDKGVSAFGQVISLDLRSQFPRSRDSEDSNLKDGADDIAKEIRYAHILNRVLPA 169
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSY--TCPTYAFATPQDTKDDFRLTPDQFNFLQALL 155
IR+L+ F+++ +C RTY Y C AT +
Sbjct: 170 DIRVLAWAPAEPSFSARFSCLERTYRYFFPCADLDIAT-----------------MNYAA 212
Query: 156 KQYEGTHNFHNFTSKRKPLDPSCS-----RYIMSFDCEQPFVKDG-------LELITLKI 203
++Y GTH+F N +D + R I+S + G +L ++
Sbjct: 213 QKYVGTHDFRNLCK----MDVANGVTNFQRTILSAQVQTVAQSPGEEGRQGPFQLCQFEV 268
Query: 204 KGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
GQ+F+ HQ+R M+ + I +G ++I++ +++ P P + +E
Sbjct: 269 IGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEKN--PQKPQYSMAVE 318
>gi|449937089|ref|ZP_21804356.1| tRNA pseudouridine synthase A [Streptococcus mutans 2ST1]
gi|450155340|ref|ZP_21878189.1| tRNA pseudouridine synthase A [Streptococcus mutans 21]
gi|449164772|gb|EMB67813.1| tRNA pseudouridine synthase A [Streptococcus mutans 2ST1]
gi|449237217|gb|EMC36088.1| tRNA pseudouridine synthase A [Streptococcus mutans 21]
Length = 249
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 115/267 (43%), Gaps = 35/267 (13%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G + G Q R ++T++ +I + L + N+ Q ++
Sbjct: 7 IISYDGTNFSGFQ----------RQPQVRTVQEEIEKTLLR--------LNSGQAVKVHG 48
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV A Q++ LP++ + E ++ P+ I ++ +++V F+++ +
Sbjct: 49 AGRTDAGVHAYGQVIHFDLPQQRDLEKLRFGLDTQTPDDIDVIQVEQVADDFHARYQKHR 108
Query: 120 RTYSYTC----PTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+TY + P T +++ F+ ++A +K+ GTH+F FT+ ++
Sbjct: 109 KTYEFLVDLGRPKNPLMRHYATHFPYKV---DFSVVKAAIKKLRGTHDFTGFTASGTSVE 165
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
R I E+ D + G F+ Q+R M+G + I G D I++
Sbjct: 166 NKV-RTISRATVEK---DDKTGFLIFTFTGSGFLYKQVRNMIGTLLKIGNGRMPIDQIDR 221
Query: 236 TF--GLDQFDLPMAPGLGLLLEQVHYD 260
G P A GL L+++ YD
Sbjct: 222 ILESGDRSLAGPTAASNGLYLKEIIYD 248
>gi|322368335|ref|ZP_08042904.1| tRNA pseudouridine synthase A [Haladaptatus paucihalophilus DX253]
gi|320552351|gb|EFW93996.1| tRNA pseudouridine synthase A [Haladaptatus paucihalophilus DX253]
Length = 263
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 104/265 (39%), Gaps = 49/265 (18%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G ++G Q R + T+E + E+L G P +
Sbjct: 3 AFRVAYDGRPFYGFQ----------RQPDVPTVEDSLFESLRALGVAD----RVPDG--Y 46
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSAL Q V+ + PE A N LP +IR+ + V F++ ++ R
Sbjct: 47 AAAGRTDSGVSALAQTVAFECPEWLTPSAFNSELPAEIRVWASADVVPAFHATHDAYYRE 106
Query: 122 YSYTC--PTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCS 179
Y Y C P ++ D RL+ G H+FHN TS D +
Sbjct: 107 YVYHCYAPRANLGLAKEASD--RLS---------------GEHDFHNLTS-----DTEGT 144
Query: 180 RYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGL 239
+ D V+DG E + + F + +R++V + +IA G I+
Sbjct: 145 VRDLGID----VVQDG-EYLVFTFQAGGFARNLVRRVVSLIHSIATGDAEMAKIDTVLAP 199
Query: 240 DQFD----LPMAPGLGLLLEQVHYD 260
+ D +P A L L V YD
Sbjct: 200 EPLDGRAGVPCASAHPLYLADVGYD 224
>gi|418963143|ref|ZP_13514985.1| tRNA pseudouridine synthase A [Streptococcus anginosus subsp.
whileyi CCUG 39159]
gi|383344009|gb|EID22180.1| tRNA pseudouridine synthase A [Streptococcus anginosus subsp.
whileyi CCUG 39159]
Length = 249
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 111/249 (44%), Gaps = 25/249 (10%)
Query: 22 FLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLK 81
F F R ++++ +I + L K N + + A RTD GV AL Q++
Sbjct: 15 FAGFQRQPHARSVQEEIEKTLTK--------INRGELVIIHGAGRTDSGVHALGQVIHFD 66
Query: 82 LPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDT 137
LP++ ++E A++ PE I +S++ V + F+S+ +++TY + P
Sbjct: 67 LPQKRDEEKLRFALDTQTPEDIDFISVEEVNEDFHSRYWKHSKTYEFIVDVGHPKNPMMR 126
Query: 138 KDDFRLT-PDQFNFLQALLKQYEGTHNFHNFTSKRKPLD---PSCSRYIMSFDCEQPFVK 193
R P + ++A + + EGTH+F FT+ ++ + + + FD ++ F
Sbjct: 127 HYATRYPYPLDLSLIEAAIAKLEGTHDFTGFTASGTSVENKVRTITEARLDFDEKRNF-- 184
Query: 194 DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDL--PMAPGLG 251
+ G F+ QIR MVG + I G + I++ L P A G
Sbjct: 185 -----LIFTFSGNGFLYKQIRNMVGTLLKIGNGRMPVEQIDRILTEKNRHLAGPTAAPNG 239
Query: 252 LLLEQVHYD 260
L L+++ Y+
Sbjct: 240 LYLKEIRYE 248
>gi|326932368|ref|XP_003212291.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Meleagris
gallopavo]
Length = 292
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 106/237 (44%), Gaps = 42/237 (17%)
Query: 59 IQFQRAARTDKGVSALKQIVSLKLPEEANKEA---------INEHL-PEQIRILSIKRVT 108
I+F ++RTD GV AL L + K A +N HL PE IRILS RVT
Sbjct: 51 IKFHISSRTDSGVHALCNSAHLDIQRAPGKPAFQEKMLIGCLNHHLKPEPIRILSAYRVT 110
Query: 109 KGFNSKNNCNARTYSYT----CPTYAFATPQDTKD-------DFRLTPDQFNFLQALLKQ 157
F+++ + +RTY Y C T+ P +D + P + Q LL
Sbjct: 111 NNFHARFSALSRTYIYRLLMGC-THHSEIPVFERDLCWAPTGGYLNVPAMQDAAQFLL-- 167
Query: 158 YEGTHNFHNFTS--KRKPLDPSCSRYIMSFDCEQP--------FVKDGLELITLKIKGQS 207
GTH+F F S P S + I+ D QP + GL+ LK K +S
Sbjct: 168 --GTHDFSTFCSLNSETPFR-SPVKTILQADI-QPSSGFLSHHYEYRGLQFWELKFKSRS 223
Query: 208 FMLHQIRKMVGVAMAIARG----FTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYD 260
F+ Q+R+MVG +A+ +G + K+L+E MAP GL L+ V Y+
Sbjct: 224 FLYRQVRRMVGALVAVGQGKLAPYHIKELLEMKDARAFPPFAMAPSSGLFLKSVEYN 280
>gi|387785250|ref|YP_006250346.1| putative tRNA pseudouridine synthase A [Streptococcus mutans LJ23]
gi|379131651|dbj|BAL68403.1| putative tRNA pseudouridine synthase A [Streptococcus mutans LJ23]
Length = 226
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 107/240 (44%), Gaps = 25/240 (10%)
Query: 31 MKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLPEEANKE- 89
M+T++ +I + L + N+ Q ++ A RTD GV A Q++ LP++ + E
Sbjct: 1 MRTVQEEIEKTLLR--------LNSGQAVKVHGAGRTDAGVHAYGQVIHFDLPQQRDLEK 52
Query: 90 ---AINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTC----PTYAFATPQDTKDDFR 142
++ P+ I ++ +++V F+++ + +TY + P T ++
Sbjct: 53 LRFGLDTQTPDDIDVIQVEQVADDFHARYQKHRKTYEFLVDLGRPKNPLMRHYATHFPYK 112
Query: 143 LTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLK 202
+ F+ ++A +K+ GTH+F FT+ ++ R I E+ D +
Sbjct: 113 V---DFSVVKAAIKKLRGTHDFTGFTASGTSVENKV-RTISRATVEK---DDKTGFLIFT 165
Query: 203 IKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTF--GLDQFDLPMAPGLGLLLEQVHYD 260
G F+ Q+R MVG + I G D I++ G P A GL L+++ YD
Sbjct: 166 FTGSGFLYKQVRNMVGTLLKIGNGRMPIDQIDRILESGDRSLAGPTAASNGLYLKEIIYD 225
>gi|436840540|ref|YP_007324918.1| tRNA pseudouridine synthase A [Desulfovibrio hydrothermalis AM13 =
DSM 14728]
gi|432169446|emb|CCO22814.1| tRNA pseudouridine synthase A [Desulfovibrio hydrothermalis AM13 =
DSM 14728]
Length = 276
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 126/284 (44%), Gaps = 33/284 (11%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ + AY G + G Q + ++T++G++ +A+ S T ++
Sbjct: 13 LKLTLAYDGTDFCGWQFQ----------PNLRTVQGELEKAI---------SHITGFPVR 53
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEAN----KEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ RTD GV A QIV L LP+ ++++N LP+ + +L V+ F+S+ +
Sbjct: 54 VHGSGRTDSGVHARGQIVHLDLPDNRTSVPWQKSLNSLLPDDVTVLDCAYVSGDFHSRFS 113
Query: 117 CNARTYSYTCPT-YAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+ YSY+ F P K ++ + + +K + G H+F +F + ++
Sbjct: 114 TVRKRYSYSIWVENDFCFPWRRKYVWKCGSLDLDAMDQAMKMFLGMHDFASFQNMGTEVN 173
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
S R ++ F +P + I L + G F+ +R MVG + I RG + +
Sbjct: 174 -STVRNVLEFS-RRP--GETPHEIKLDVCGTGFLKQMVRNMVGCLVKIGRGKEKPEFVRS 229
Query: 236 TFGL-DQFDLP-MAPGLGLLLEQVHY---DLYNQKYGQDGMHES 274
+ D+ P AP GL LE+V+Y D G++ H+S
Sbjct: 230 LLQMKDRTMAPATAPARGLCLERVYYGESDCGGSDTGRNQSHQS 273
>gi|449472493|ref|XP_004153611.1| PREDICTED: putative tRNA pseudouridine synthase-like [Cucumis
sativus]
Length = 464
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 77/151 (50%), Gaps = 19/151 (12%)
Query: 34 IEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLK--LPEEAN---- 87
IE ++ +A++KAG + + ++ I + R++RTDKGV +L ++LK +P A
Sbjct: 57 IEQELEDAIYKAGGICDSNYGNLNKISWARSSRTDKGVHSLATTITLKMEIPGSAWIDDP 116
Query: 88 -----KEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATP---QDTKD 139
+ IN +LP+ I++ I K F+ + C+ R YSY P + T+
Sbjct: 117 CGISLADYINSYLPDNIKVFGIVPAQKRFDPRKECDVRMYSYLLPAKLIGIESKLKTTEI 176
Query: 140 DFRLTPDQFNFLQALLKQYEGTHNFHNFTSK 170
D ++ + +LK +EG H FHN+T +
Sbjct: 177 DCHISD-----FKDILKSFEGDHPFHNYTVR 202
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 70/145 (48%), Gaps = 10/145 (6%)
Query: 180 RYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGL 239
R I+ C + G + I + I G+SFMLHQIRKM+ A+A+ R +D+I T L
Sbjct: 301 RRILYCSCGKLETYFGCDFIEISIWGESFMLHQIRKMIATAVAVKRKLLPRDII--TLSL 358
Query: 240 DQFD---LPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVD---KEVNEFRHKFIL 293
+F LP+AP L+L + ++ G E +E D VNEF IL
Sbjct: 359 TKFSRIVLPIAPAEVLVLRGNSFS-NRKRPGAPMRSELFTLNESDDIVNSVNEFYRSAIL 417
Query: 294 PYLVKTEITEKPMLA-WLELLADHS 317
P + K TE P W+E L ++
Sbjct: 418 PEVTKFLDTESPPWKEWVEKLDKYT 442
>gi|317123065|ref|YP_004103068.1| tRNA pseudouridine synthase A [Thermaerobacter marianensis DSM
12885]
gi|315593045|gb|ADU52341.1| tRNA pseudouridine synthase A [Thermaerobacter marianensis DSM
12885]
Length = 298
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/266 (23%), Positives = 110/266 (41%), Gaps = 32/266 (12%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ AY G + G Q + R + ++ + D +E L ++
Sbjct: 49 VLAYDGTDFAGWQRQ-------PRQRTVQQVVEDALERLLG------------HPVRVTA 89
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV A Q++ + P + A+ LP + + GF+++ +
Sbjct: 90 AGRTDAGVHARAQVIHWRTPRPFPVDRLVPALRGLLPADVVAVEAGEAPPGFHARYSARR 149
Query: 120 RTYSYTCPTYAFATPQDTKDDFRLTPD-QFNFLQALLKQYEGTHNFHNFTSKRKPLDPSC 178
+TY+Y P + + L D + + ++ EGTH+F F + P+
Sbjct: 150 KTYAYHVWRDPVPDPLHRRWQWHLPLDLDVDAMVEAARRLEGTHDFAPFKAAGSPV--RR 207
Query: 179 SRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFG 238
+R + + C V++ L+ ++ F++H R +VG + I RG D +E
Sbjct: 208 TRRTL-YRCA---VEERGPLLRFVLEADGFLMHMARGIVGTLVEIGRGRWQADRVEAILA 263
Query: 239 LDQFDL--PMAPGLGLLLEQVHYDLY 262
+ DL P AP GL+L QV YD +
Sbjct: 264 EGRRDLAGPTAPAHGLVLWQVVYDDW 289
>gi|448620373|ref|ZP_21667721.1| tRNA pseudouridine synthase A [Haloferax denitrificans ATCC 35960]
gi|445757161|gb|EMA08517.1| tRNA pseudouridine synthase A [Haloferax denitrificans ATCC 35960]
Length = 276
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 93/244 (38%), Gaps = 37/244 (15%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G Y G Q R + T+E +A G +D + +
Sbjct: 3 AFRVAYDGRPYHGFQ----------RQPDVPTVEDAFFDACRALGVCDDDE----EPTDY 48
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSAL Q V+ P+ A+N LP +R + F++++ R
Sbjct: 49 AAAGRTDAGVSALAQTVAFDCPDWCTPRALNSELPGTVRAWAAADAPDDFHARHRPTRRE 108
Query: 122 YSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRY 181
Y Y P D DD R + A G H+FHN T P D R
Sbjct: 109 Y-----VYDLHAPSDGFDDDRAS--------AAFDACRGEHDFHNLT----PDDHGTVRA 151
Query: 182 IMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQ 241
I + +DG + + ++++ F +R++V + A+ G ++ G D
Sbjct: 152 I-----DGDLTRDG-DFLLVRVEAGGFARELVRRLVSLVRAVGSGAAPPSKVDDVLGPDH 205
Query: 242 FDLP 245
D P
Sbjct: 206 LDGP 209
>gi|449017039|dbj|BAM80441.1| pseudouridine synthase 3 [Cyanidioschyzon merolae strain 10D]
Length = 467
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 96/227 (42%), Gaps = 39/227 (17%)
Query: 57 QNIQFQRAARTDKGVSALKQIVSL--KLPEEANK-------EAINEHLPEQIRILSIKRV 107
+ Q+ R RTDKGVSA+ Q+VSL + P +N LP +R+ + V
Sbjct: 139 KGWQYARGGRTDKGVSAIGQVVSLLVRCPPPGTGTNFYDYIHLLNRELPASVRVYAWAPV 198
Query: 108 TKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNF 167
F+++ + +RTY Y P + + + A K+ G H+F NF
Sbjct: 199 ADDFSARFSAYSRTYKYFVPNV-------------FSDEGICSMVAAAKKMVGRHDFANF 245
Query: 168 TS-KRKPLDPSCSRYIMSFDCEQPFVKDGL-------ELITLKIKGQSFMLHQIRKMVGV 219
+ + R I+ C KD ++ I+GQ+F+ HQ+R M+ +
Sbjct: 246 CKFDAETTKGNTERVIL--QCTVELAKDEFYRALFPRGILEFTIEGQAFLYHQVRFMIAL 303
Query: 220 AMAIARGFTSKDLIEKTFGLD-------QFDLPMAPGLGLLLEQVHY 259
+ I RG + L++ GLD + AP L+L +HY
Sbjct: 304 LLEIGRGTENISLVDSLLGLDGSPRIDPRPQYVQAPEHPLVLWNIHY 350
>gi|320107224|ref|YP_004182814.1| pseudouridine synthase I TruA [Terriglobus saanensis SP1PR4]
gi|319925745|gb|ADV82820.1| Pseudouridine synthase I, TruA, alpha/beta domain protein
[Terriglobus saanensis SP1PR4]
Length = 287
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 123/287 (42%), Gaps = 60/287 (20%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
+ AY G + G Q + G+ TI+G + A+ T + + Q
Sbjct: 19 LKLAYDGTDFAGWQVQ----------PGLPTIQGSLASAIRSV---------TSEEVLPQ 59
Query: 63 RAARTDKGVSALKQIVSLKL----PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ RTD GV AL Q+VSLKL P + K A+N LP IR+L V F+++
Sbjct: 60 GSGRTDAGVHALGQVVSLKLAVPIPPDNLKRALNRILPTSIRVLEAGIVAPEFHARRGVL 119
Query: 119 ARTYSYTCPTYAFATPQDTKDDFRLTPDQFNF---------LQALLKQYE---GTHNFHN 166
++TY Y T P ++ +P++ + + A+++ E GTH+F +
Sbjct: 120 SKTYRY---TLFLCRPTKDVEEIVCSPERARWVWQYPAPLDVAAMMQAAERFVGTHDFTS 176
Query: 167 FTS----KRKPLD-----PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMV 217
F + ++ L+ P R + S + G EL + +++G F+ H +R +V
Sbjct: 177 FAANDPERKTRLEAESNAPDNIRTLYS----SAWTLCGDEL-SYQVRGSGFLHHMVRNLV 231
Query: 218 GVAMAIARGFT-----SKDLIEKTFGLDQFDLPMAPGLGLLLEQVHY 259
G + + G K L+ K G P AP GL L +V Y
Sbjct: 232 GTCVDVGAGRILATEMEKILVAKNRGAAG---PTAPPQGLSLLEVEY 275
>gi|451947437|ref|YP_007468032.1| pseudouridylate synthase I [Desulfocapsa sulfexigens DSM 10523]
gi|451906785|gb|AGF78379.1| pseudouridylate synthase I [Desulfocapsa sulfexigens DSM 10523]
Length = 261
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 119/268 (44%), Gaps = 38/268 (14%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKA-GFVTEDSFNTPQNIQF 61
++ Y G + G Q + ++T++GD+++ + G V D
Sbjct: 12 LILEYDGTNFSGWQKQV----------NVRTVQGDVLKGAARVFGEVPMD---------L 52
Query: 62 QRAARTDKGVSALKQIVSLKL-----PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
Q RTD GV AL+ + L++ P E ++ +NE LP+ I + S++ F++++N
Sbjct: 53 QGCGRTDSGVHALEYVAHLEVAADMGPHEVARK-LNETLPKDIAVRSVEAAGARFHARHN 111
Query: 117 CNARTYSYTCPTYAFATPQDTKDDFRLTPD-QFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
C AR+Y Y T A + + D+ + D +Q G H+F F K K L
Sbjct: 112 CIARSYVYQIRTEKSAFGK--RYDWWVQADLDLPAMQHAGSLMTGMHDFAAFAEK-KELK 168
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
S I + + V E++ +++ G F+ H +R+MVG+ + + +++ ++
Sbjct: 169 KSTRVLIHNVE-----VFKEKEILKIRVVGSHFLWHMVRRMVGIMVEVGCHRLTEEDVQN 223
Query: 236 TFGLDQFDLP---MAPGLGLLLEQVHYD 260
LP AP GL E+ YD
Sbjct: 224 MLEDHSNALPSHHTAPSAGLFFEKAFYD 251
>gi|450011399|ref|ZP_21829163.1| tRNA pseudouridine synthase A [Streptococcus mutans A19]
gi|450023443|ref|ZP_21830615.1| tRNA pseudouridine synthase A [Streptococcus mutans U138]
gi|449189576|gb|EMB91228.1| tRNA pseudouridine synthase A [Streptococcus mutans A19]
gi|449193349|gb|EMB94734.1| tRNA pseudouridine synthase A [Streptococcus mutans U138]
Length = 249
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 114/267 (42%), Gaps = 35/267 (13%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G + G Q R ++T++ +I + L + N+ Q ++
Sbjct: 7 IISYDGTNFSGFQ----------RQPQVRTVQEEIEKTLLR--------LNSGQAVKIHG 48
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV A Q++ LP + + E ++ P+ I ++ +++V F+++ +
Sbjct: 49 AGRTDAGVHAYGQVIHFDLPPQRDLEKLRFGLDTQTPDDIDVIQVEQVADDFHARYQKHR 108
Query: 120 RTYSYTC----PTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+TY + P T +++ F+ ++A +K+ GTH+F FT+ ++
Sbjct: 109 KTYEFLVDLGRPKNPLMRHYATHFPYKV---DFSVVKAAIKKLRGTHDFTGFTASGTSVE 165
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
R I E+ D + G F+ Q+R MVG + I G D I++
Sbjct: 166 NKV-RTISRATVEK---DDKTGFLIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPIDQIDR 221
Query: 236 TF--GLDQFDLPMAPGLGLLLEQVHYD 260
G P A GL L+++ YD
Sbjct: 222 ILESGDRSLAGPTAASNGLYLKEIIYD 248
>gi|374993009|ref|YP_004968508.1| pseudouridylate synthase I [Desulfosporosinus orientis DSM 765]
gi|357211375|gb|AET65993.1| pseudouridylate synthase I [Desulfosporosinus orientis DSM 765]
Length = 262
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 79/282 (28%), Positives = 117/282 (41%), Gaps = 61/282 (21%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEG---DIMEALFKAGFVTEDSFNTPQ 57
+ + AY G Y G Q + + TI+G + E L K +
Sbjct: 4 ICLKLAYDGTNYHGFQRQAEAY--------GPTIQGTLEKVWEKLVK------------E 43
Query: 58 NIQFQRAARTDKGVSALKQIVSL----KLPEEANKEAINEHLPEQIRILSIKRVTKGFNS 113
+ A RTD GV AL QIV+ ++PEE +A N LP+ IRIL + V F+S
Sbjct: 44 KVAITMAGRTDAGVHALGQIVNFMTASRIPEEKIPKAFNSLLPKDIRILQAECVPDEFSS 103
Query: 114 KNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQA----------LLKQ----YE 159
+ + + Y Y + D +L PD FN L A L++Q E
Sbjct: 104 RWSAKWKRYDY-------------RIDNKLIPDIFNRLYAAHEPIPLKIDLMQQAALLME 150
Query: 160 GTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGV 219
G HNF F + S R I + C Q + +D ++I + G F+ H +R +VG
Sbjct: 151 GRHNFKTFAASGGD-SKSFERTI--YRC-QVYEEDN-KMIRVSCVGDGFLYHMVRIIVGT 205
Query: 220 AMAIARGFTSKDLIEKTFGLDQFDLP--MAPGLGLLLEQVHY 259
+ + +G T I + D +AP GL L V+Y
Sbjct: 206 LLEVGKGKTLPQKIPEIIASQDRDRARMIAPARGLTLIHVNY 247
>gi|417937508|ref|ZP_12580808.1| tRNA pseudouridine synthase A [Streptococcus infantis SK970]
gi|343391772|gb|EGV04345.1| tRNA pseudouridine synthase A [Streptococcus infantis SK970]
Length = 249
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 112/267 (41%), Gaps = 35/267 (13%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G + G Q R ++++ +I + L K N Q I
Sbjct: 7 IISYDGYAFAGFQ----------RQPHARSVQEEIEKTLTK--------LNKGQAITIHG 48
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV AL Q+V LP + ++E A++ PE I ++SI+ V F+ + ++
Sbjct: 49 AGRTDSGVHALGQVVHFDLPYQMDEEKLRFALDTQSPEDIDVISIEIVADDFHCRYAKHS 108
Query: 120 RTYSYTCPTYAFATPQDTKDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+TY + P++ T P +Q LK+ EGTH+F FT+ ++
Sbjct: 109 KTYEFIVDR---GRPKNPMRRHYATHYPYPLDVKRMQLALKKLEGTHDFTGFTASGTSVE 165
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
R IM V + + +T G F+ QIR MVG + I + I+
Sbjct: 166 DKV-RTIMEASLR---VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPIEQIDL 221
Query: 236 TFGLD--QFDLPMAPGLGLLLEQVHYD 260
Q P A GL L+++ Y+
Sbjct: 222 ILEKKDRQLAGPTAAPNGLYLKEIRYE 248
>gi|238882564|gb|EEQ46202.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 491
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 112/268 (41%), Gaps = 54/268 (20%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A FAY G Y GL + + T+E ++AL K + E + ++
Sbjct: 134 VAFKFAYLGWNYNGLALQL-------EPTPLPTVEEVFLKALAKVKLIKE----PIEEVK 182
Query: 61 FQRAARTDKGVSALKQIVSLK------LPEEANKE----------AINEHLPEQIRILSI 104
F R RTDKGVSA+ Q++S+ L ++N E +N +LP I++ SI
Sbjct: 183 FSRCGRTDKGVSAMNQVISINVRSNITLENQSNPEFDDLEIDYISVLNANLPSDIKVHSI 242
Query: 105 K-RVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHN 163
R F+++ +C +R Y Y FR + K Y+G H+
Sbjct: 243 CLRPPPDFDARFSCLSRHYRYI---------------FRKQDLDIELMNQGAKLYQGIHD 287
Query: 164 FHNFTSKRKPLDPSCSRYIMSFDCE---QPFVKDGLELITLKIKGQSFMLHQIRKMVGVA 220
F NF LD S+ I +F E + + +KG +F+ HQ+R MV +
Sbjct: 288 FRNFCK----LDG--SKQITNFVREIYQSQIIHLHQDYYCFDLKGSAFLWHQVRCMVAIL 341
Query: 221 MAIARGFTSKDLIEKTFGLDQFDLPMAP 248
I +G S +I ++F P P
Sbjct: 342 FTIGQGLESPSIITDLMDTNKF--PTKP 367
>gi|23097605|ref|NP_691071.1| tRNA pseudouridine synthase A [Oceanobacillus iheyensis HTE831]
gi|38258776|sp|Q8CXP1.1|TRUA_OCEIH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|22775828|dbj|BAC12106.1| tRNA pseudouridine synthase A [Oceanobacillus iheyensis HTE831]
Length = 253
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 121/243 (49%), Gaps = 34/243 (13%)
Query: 32 KTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVS----LKLPEEAN 87
+T++G + +AL+ + + ++I+ Q + RTD GV A+ Q++ L++PE
Sbjct: 25 RTVQGVLEKALY--------NMHKGKSIRIQASGRTDTGVHAVGQVIHFDSPLEIPERNW 76
Query: 88 KEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRL---- 143
K+A+N LP+ +RI +++ T+ F+++ + + Y Y F ++ + F+
Sbjct: 77 KQALNTLLPDDVRIQKVEKKTEEFHARYSVKEKEYHY------FVLNEEDPNVFQRGYVY 130
Query: 144 -TPDQFNF--LQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELIT 200
P + + +Q + EGTH+F +F+S + + S R + C Q +E I
Sbjct: 131 HEPRKLDLERMQEACQYLEGTHDFTSFSSAKSSVKGSKVRTLYHVSCHQ--TGTNIEFI- 187
Query: 201 LKIKGQSFMLHQIRKMVGVAMAIARGFTS-KDLIE--KTFGLDQFDLPMAPGLGLLLEQV 257
+G F+ + +R M+ V + + +G + +D+I+ + Q MAP GL L +V
Sbjct: 188 --FRGSGFLYNMVRIMMSVLIDVGKGKRNPEDIIDLLASKNRQQIGKTMAPQ-GLYLWRV 244
Query: 258 HYD 260
Y+
Sbjct: 245 SYE 247
>gi|448312986|ref|ZP_21502716.1| tRNA pseudouridine synthase A [Natronolimnobius innermongolicus JCM
12255]
gi|445599645|gb|ELY53674.1| tRNA pseudouridine synthase A [Natronolimnobius innermongolicus JCM
12255]
Length = 293
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 109/273 (39%), Gaps = 40/273 (14%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G GY G Q R + T+E + + L + G + D+ + P +
Sbjct: 5 AFRIAYDGAGYHGFQ----------RQPDVATVEDALFDGLRELGVLAADA-DKPAG--Y 51
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSAL Q + L+ PE A N LP IR + F++ ++ + RT
Sbjct: 52 AAAGRTDAGVSALAQTICLEAPEWLTPRAFNAGLPADIRAWAAVDAPPDFHATHDASERT 111
Query: 122 YSYTCPTYAFATPQDTKDDFRLTPDQFNFLQ-----------ALLKQYEGTHNFHNFTSK 170
YSY YA + D D L+ A + G H+FHN T
Sbjct: 112 YSYHL--YAPSASNDHGGDDATDAGGHTALERECAVDDGRFRAACEALSGPHDFHNLT-- 167
Query: 171 RKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSK 230
P D + R + + +DG + + + + F +R++V +A A+ G
Sbjct: 168 --PDDRNTER-APTLEAS----RDG-DYLVVTVTAGGFARELVRRLVSLARAVGTGTEPL 219
Query: 231 DLIEKTFGLDQF----DLPMAPGLGLLLEQVHY 259
I++ + + AP L+L V Y
Sbjct: 220 AKIDRALAPEPLPGHEGVAPAPPEPLVLTDVTY 252
>gi|138893815|ref|YP_001124268.1| tRNA pseudouridine synthase A [Geobacillus thermodenitrificans
NG80-2]
gi|196250992|ref|ZP_03149674.1| tRNA pseudouridine synthase A [Geobacillus sp. G11MC16]
gi|166228701|sp|A4IJL9.1|TRUA_GEOTN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|134265328|gb|ABO65523.1| tRNA pseudouridine synthase A [Geobacillus thermodenitrificans
NG80-2]
gi|196209464|gb|EDY04241.1| tRNA pseudouridine synthase A [Geobacillus sp. G11MC16]
Length = 253
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 115/271 (42%), Gaps = 45/271 (16%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ AY G + G Q + G +T++G+ E + K + +++
Sbjct: 8 VVAYDGTYFSGYQVQ----------PGKRTVQGE-FEGVLK-------RMHKGDDVRITA 49
Query: 64 AARTDKGVSALKQIV----SLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
+ RTD GV A Q++ L L E K+A+N LP+ I + S+ F+++ + A
Sbjct: 50 SGRTDAGVHAYGQVIHFDTPLALSPEQWKKALNAQLPDDIAVRSVDEADSTFHARFSAKA 109
Query: 120 RTYSYTCPTYAFATPQDTKDDFRL-------TPDQFNFLQALLKQYEGTHNFHNFTSKRK 172
+ Y Y T A +D FR P + + + L +GTH+F +F S +
Sbjct: 110 KEYRYNVWTAA------ERDVFRRHYCAWHPYPLRVDAMSEALGLLKGTHDFTSFCSAKT 163
Query: 173 PL-DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKD 231
+ D + Y + + P ++ + G F+ + +R +VG + + +G D
Sbjct: 164 VIEDRVRTIYQAEMEVDGP-------MLQFRFVGSGFLYNMVRIIVGTVLEVGQGKRPPD 216
Query: 232 LIEKTFGLDQFDL--PMAPGLGLLLEQVHYD 260
IE L P AP GL L +V+YD
Sbjct: 217 DIEALLAAKDRRLAGPTAPAEGLYLWRVYYD 247
>gi|222445148|ref|ZP_03607663.1| hypothetical protein METSMIALI_00769 [Methanobrevibacter smithii
DSM 2375]
gi|222434713|gb|EEE41878.1| tRNA pseudouridine synthase A [Methanobrevibacter smithii DSM 2375]
Length = 288
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 119/275 (43%), Gaps = 51/275 (18%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A+ Y G + G Q R ++T+E +++ L K G++ + + +F
Sbjct: 5 ALKIGYIGTNFHGFQ----------RQPDLRTVEEELIYHLRKLGYIDD-----LKKSRF 49
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
+ A RTD GV +L ++S + +E IN LP+ I+IL+ V GF + R
Sbjct: 50 RIAGRTDAGVHSLGNVISFQSEKEVRVNEINNSLPDDIQILAKAPVRFGFKPR-YAEMRQ 108
Query: 122 YSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRY 181
Y Y FR D + L + + ++GTHNF NFT K + +R
Sbjct: 109 YRYVL--------------FRSDLDLYK-LNEVAEIFKGTHNFTNFT---KRFQKTTTRT 150
Query: 182 IMSFDC-----------EQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSK 230
I E P + D L + + I G+SF+ + +RKM+ V + +A G S
Sbjct: 151 IDDIKITKANLNDYHKKEFPNLHDTLSPVFVDIYGESFLWNMVRKMMRVFVDVAIGKLSL 210
Query: 231 DLIEKTFGLDQFDL-----PMAPGLGLLLEQVHYD 260
+ +E+ + DL + P L+L + YD
Sbjct: 211 EKVEELLNPAENDLRANIKVLDPDY-LILMDIKYD 244
>gi|227499255|ref|NP_075781.3| tRNA pseudouridine(38/39) synthase [Mus musculus]
gi|52783242|sp|Q9JI38.2|PUS3_MOUSE RecName: Full=tRNA pseudouridine(38/39) synthase; AltName:
Full=tRNA pseudouridine synthase 3; AltName: Full=tRNA
pseudouridylate synthase 3; AltName: Full=tRNA-uridine
isomerase 3
gi|22137577|gb|AAH29253.1| Pseudouridine synthase 3 [Mus musculus]
gi|148693450|gb|EDL25397.1| pseudouridine synthase 3, isoform CRA_c [Mus musculus]
Length = 481
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 116/288 (40%), Gaps = 66/288 (22%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K V + Q
Sbjct: 66 VALKIAYLGWGYQGFASQ---------ENTSNTIEEKLFEALTKTRLV-----ESRQTSN 111
Query: 61 FQRAARTDKGVSALKQIVSLKL---------PEEAN--------------KEAINEHLPE 97
+ R RTDKGVSA Q++SL L E++N +N LP
Sbjct: 112 YHRCGRTDKGVSAFGQVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPA 171
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IR+L+ V F+++ +C RTY Y P + D + + ++
Sbjct: 172 DIRVLAWAPVEPSFSARFSCLERTYRYFFP----------RADLDIAT-----MNYAAQK 216
Query: 158 YEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV----------KDGLELITLKIKGQS 207
Y GTH+F N + + + + C Q + ++ +L ++ GQ+
Sbjct: 217 YVGTHDFRNLC--KMDVANGVINFQRTILCAQVQLVAQSPGEERRQEPFQLCQFEVIGQA 274
Query: 208 FMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
F+ HQ+R M+ + I +G ++I++ + + P P + +E
Sbjct: 275 FLYHQVRCMMAILFLIGQGMEKPEIIDELLNIQKN--PQKPQYSMAVE 320
>gi|237743728|ref|ZP_04574209.1| tRNA pseudouridine synthase A [Fusobacterium sp. 7_1]
gi|229432759|gb|EEO42971.1| tRNA pseudouridine synthase A [Fusobacterium sp. 7_1]
Length = 245
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 114/273 (41%), Gaps = 47/273 (17%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ + F Y G GY+G Q R T++G+I + L T + I
Sbjct: 6 IKIEFRYDGSGYYGFQ----------RQPNKITVQGEIEKIL---------RIVTKEEIN 46
Query: 61 FQRAARTDKGVSALKQI----VSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
A RTD+GV A Q+ S +P E K + LP I ILS++ V + FN+++N
Sbjct: 47 LISAGRTDRGVHANHQVSNFYTSSTIPIEKYKYLLTRALPNDIDILSVEEVDENFNARHN 106
Query: 117 CNARTYSYTC-----PTYA-FATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSK 170
R Y Y P A + K D R L+ + + G H+F NF
Sbjct: 107 AKMREYVYIISWEKNPFEARYCKFVKEKIDVRK-------LEKIFSDFVGVHDFKNFR-- 157
Query: 171 RKPLDPSCSRYIMS--FDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFT 228
L+ S+ + + E + G I + IKG +F+ Q+R MVG+A+ I G
Sbjct: 158 ---LNDCVSKVTIREIYQIEVKYF--GESKIKIYIKGSAFLKSQVRIMVGIALEIYYGRL 212
Query: 229 SKDLIEKTFG--LDQFDLPMAPGLGLLLEQVHY 259
++ I ++ + GL L +++Y
Sbjct: 213 PENHIRLMLNDFTREYKKNLVEAEGLYLNKINY 245
>gi|154341677|ref|XP_001566790.1| putative pseudouridine synthase A-like protein [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134064115|emb|CAM40310.1| putative pseudouridine synthase A-like protein [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 499
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 101/243 (41%), Gaps = 37/243 (15%)
Query: 33 TIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSL------------ 80
T+EG + +AL + + ED P N F R RTDKGVSAL SL
Sbjct: 85 TVEGLVCDALRRVRLIPEDG---PHN--FGRCGRTDKGVSALGNAFSLTARASCTADADP 139
Query: 81 KLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDD 140
+LP +N LP IRI+ V F+++ +C RTY Y
Sbjct: 140 QLPPLDYCSMLNNVLPSTIRIVGCALVDDRFDARFSCVHRTYRYY--------------- 184
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELIT 200
F +Q + GTHNF NF + +R ++S ++ ELI+
Sbjct: 185 FCHRGLNLAAMQEAAAFFLGTHNFRNFCQMDVVNVSNFTRTVLSVGLHPS--EELPELIS 242
Query: 201 -LKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFD--LPMAPGLGLLLEQV 257
L+I SF+ HQIR + V + RG + +++ L P+A G L+L
Sbjct: 243 YLEITANSFLYHQIRCTMEVLFLVGRGLEAPSVVQTMLELGDCKPTYPLADGTPLILWDC 302
Query: 258 HYD 260
+D
Sbjct: 303 AFD 305
>gi|26347775|dbj|BAC37536.1| unnamed protein product [Mus musculus]
Length = 481
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 116/288 (40%), Gaps = 66/288 (22%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K V + Q
Sbjct: 66 VALKIAYLGWGYQGFASQ---------ENTSNTIEEKLFEALTKTRLV-----ESRQTSN 111
Query: 61 FQRAARTDKGVSALKQIVSLKL---------PEEAN--------------KEAINEHLPE 97
+ R RTDKGVSA Q++SL L E++N +N LP
Sbjct: 112 YHRCGRTDKGVSAFGQVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPA 171
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IR+L+ V F+++ +C RTY Y P + D + + ++
Sbjct: 172 DIRVLAWAPVEPSFSARFSCLERTYRYFFP----------RADLDIAT-----MNYAAQK 216
Query: 158 YEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV----------KDGLELITLKIKGQS 207
Y GTH+F N + + + + C Q + ++ +L ++ GQ+
Sbjct: 217 YVGTHDFRNLC--KMDVANGVINFQRTILCAQVQLVAQSPGEERRQEPFQLCQFEVIGQA 274
Query: 208 FMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
F+ HQ+R M+ + I +G ++I++ + + P P + +E
Sbjct: 275 FLYHQVRCMMAILFLIGQGMEKPEIIDELLNIQKN--PQKPQYSMAVE 320
>gi|295398321|ref|ZP_06808363.1| tRNA pseudouridine synthase A [Aerococcus viridans ATCC 11563]
gi|294973460|gb|EFG49245.1| tRNA pseudouridine synthase A [Aerococcus viridans ATCC 11563]
Length = 285
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 95/211 (45%), Gaps = 13/211 (6%)
Query: 57 QNIQFQRAARTDKGVSALKQIVSLKLPEEANKEAI----NEHLPEQIRILSIKRVTKGFN 112
+IQ + RTD GV AL Q++ P E +EA+ N L + IRI ++RV F+
Sbjct: 42 HDIQVVGSGRTDSGVHALGQVIHFDYPAEIGEEAVLRAMNSILDDAIRITKVERVEDDFH 101
Query: 113 SKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNF--LQALLKQYEGTHNFHNFTSK 170
++ + N + Y Y T F +P T+ P + + +Q LK G H+F +F S
Sbjct: 102 ARFHTNGKKYIYKVDTSKFPSPF-TRQYMYHHPYRTDVTRMQTALKDIIGVHDFKSFCST 160
Query: 171 RKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSK 230
+ + ++ + E +T +G F+ + +R +VG + I G
Sbjct: 161 KT----DKTNFVREIYRAEVTADPDAETLTFVFEGSGFLYNMVRILVGTTLQIGDGLRPV 216
Query: 231 DLIEKTFGLDQFDL--PMAPGLGLLLEQVHY 259
D +++ + + P A GL L +V+Y
Sbjct: 217 DEMKRLITAEDRNEAGPTAAAHGLYLAEVYY 247
>gi|261332259|emb|CBH15253.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 573
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 23/146 (15%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSF---NTPQ 57
+A++F Y G Y GLQ +L T+E +++ AL +A ++E+++ Q
Sbjct: 35 VAIIFGYIGERYCGLQWNHL--------PNYPTVEEELLRALRRADMISEENYAQQKVQQ 86
Query: 58 NIQFQRAARTDKGVSALKQIVSLK--LPEEAN----------KEAINEHLPEQIRILSIK 105
+ ++RA+RTDKGV AL+ + SL LP + + + E LP I + I
Sbjct: 87 KLNWERASRTDKGVHALRNVFSLNVMLPYAKDSTSEFDVGEARRLLTEALPSDIVVYEII 146
Query: 106 RVTKGFNSKNNCNARTYSYTCPTYAF 131
VT+ FN+ C +R Y Y PT+AF
Sbjct: 147 PVTRSFNAYMMCGSRKYEYYLPTFAF 172
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKD 194
+R+TP + + + K +EGTH++HNFT K DPS +RYI S +PFV D
Sbjct: 306 YRVTPQRLEHARNIFKLFEGTHSYHNFTPGGKASDPSSARYITSVTVSEPFVVD 359
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 9/128 (7%)
Query: 195 GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTF--GLDQFDLPMAPGLGL 252
GLE++ +++ GQSF+ +QIRKM+G ++ D + F + PM P GL
Sbjct: 433 GLEVVRIELSGQSFLFNQIRKMIGTVASMCAAGLPPDYLRDHFLNKAVRCGTPMVPANGL 492
Query: 253 LLEQVHYDLYNQKYGQDGM-------HESLHFHEVDKEVNEFRHKFILPYLVKTEITEKP 305
L + + YN + + + ++ VD++ E + I+ +++ E+
Sbjct: 493 FLTYLDFQRYNYRLDRIQLEGENGKGKGGIYVDRVDEQAVETFRRKIVAVVLRNEMATDA 552
Query: 306 MLAWLELL 313
+ W+ L
Sbjct: 553 IGRWMRSL 560
>gi|449268482|gb|EMC79346.1| tRNA pseudouridine synthase-like 1 [Columba livia]
Length = 284
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 105/240 (43%), Gaps = 48/240 (20%)
Query: 59 IQFQRAARTDKGVSALKQIVSLKLPEEANKEAINE---------HL-PEQIRILSIKRVT 108
I+F ++RTD GV AL L + K NE HL PE IRIL+ RV
Sbjct: 51 IKFHISSRTDTGVHALCNAAHLDIQRAPGKPIFNEKQLVLGLNHHLKPEPIRILNAYRVA 110
Query: 109 KGFNSKNNCNARTYSYT----------CPTY----AFATPQDTKDDFRLTPDQFNFLQAL 154
F+++ + +RTY Y P + +A P + P + Q L
Sbjct: 111 SSFHARFSALSRTYVYRLLMGCRHHSEIPVFERNLCWAPPGGPLN----VPAMQDAAQFL 166
Query: 155 LKQYEGTHNFHNFTSKRK--PLDPSCSRYIMSFDCEQP--------FVKDGLELITLKIK 204
L GTH+F F S+ PL S R I D QP + GLE LK +
Sbjct: 167 L----GTHDFSTFRSQNSETPLQ-SPIRTISQVDI-QPSAGLLSHHYEHRGLEFWELKFR 220
Query: 205 GQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGL-DQFDLP---MAPGLGLLLEQVHYD 260
+SF+ Q+R+MVG +A+ +G + I++ + D P MAP GL L+ V YD
Sbjct: 221 SRSFLYRQVRRMVGALVAVGQGRLTPRHIKELLEIKDSRAFPANAMAPPSGLFLKSVEYD 280
>gi|73748346|ref|YP_307585.1| tRNA pseudouridine synthase A [Dehalococcoides sp. CBDB1]
gi|289432394|ref|YP_003462267.1| tRNA pseudouridine synthase A [Dehalococcoides sp. GT]
gi|452203351|ref|YP_007483484.1| pseudouridylate synthase [Dehalococcoides mccartyi DCMB5]
gi|73660062|emb|CAI82669.1| tRNA pseudouridine synthase A [Dehalococcoides sp. CBDB1]
gi|288946114|gb|ADC73811.1| tRNA pseudouridine synthase A [Dehalococcoides sp. GT]
gi|452110410|gb|AGG06142.1| pseudouridylate synthase [Dehalococcoides mccartyi DCMB5]
Length = 246
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 117/271 (43%), Gaps = 45/271 (16%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
M+ Y G Y G Q +++G TI+G++ A+ K T + +
Sbjct: 1 MVIEYEGTRYSGFQ---------IQDKG-ATIQGELETAIRKL---------TSEQTRVS 41
Query: 63 RAARTDKGVSALKQIVSL----KLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ RTD GV A Q+VS L E K +N +LP I + + V + F+ +
Sbjct: 42 GSGRTDAGVHAAYQVVSYLTESSLGLEKIKGGLNYYLPPDIAVKEVHFVAENFDVRRRAI 101
Query: 119 ARTYSYTCPTYAFATP----QDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
+R YSY +P Q + ++L ++ K EG H+F F S L
Sbjct: 102 SREYSYHILNSKTRSPLARLQAWQVPYKL---DIKLMEQAFKMLEGEHDFIAFASS---L 155
Query: 175 DPSCSRYIMSFDCEQ-PFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKD-- 231
P + + + + V+D L L+I+ SF+ HQ+R +GV + + RG S
Sbjct: 156 GPEIKKTVRRVNWTRLDIVEDRL---ILRIEANSFLTHQVRNTIGVLVELGRGTISMGEF 212
Query: 232 --LIE-KTFGLDQFDLPMAPGLGLLLEQVHY 259
L E KT GL P AP GL L +V+Y
Sbjct: 213 GALFEAKTPGLAG---PAAPACGLSLVRVNY 240
>gi|452204787|ref|YP_007484916.1| pseudouridylate synthase [Dehalococcoides mccartyi BTF08]
gi|452111843|gb|AGG07574.1| pseudouridylate synthase [Dehalococcoides mccartyi BTF08]
Length = 246
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 117/270 (43%), Gaps = 43/270 (15%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
M+ Y G Y G Q +++G TI+G++ A+ K T + +
Sbjct: 1 MVIEYEGTRYSGFQ---------IQDKG-ATIQGELETAIRKL---------TSEQTRVS 41
Query: 63 RAARTDKGVSALKQIVSL----KLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ RTD GV A Q+VS L E K +N +LP I + + V + F+ +
Sbjct: 42 GSGRTDAGVHAAYQVVSYLTESSLGLEKIKGGLNYYLPPDIAVKEVHFVAENFDVRRRAI 101
Query: 119 ARTYSYTCPTYAFATP----QDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
+R YSY +P Q + ++L ++ K EG H+F F S L
Sbjct: 102 SREYSYHILNSKTRSPLARLQAWQVPYKL---DIKLMEQAFKMLEGEHDFIAFASS---L 155
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKD--- 231
P + + + + + + + + L+I+ SF+ HQ+R +GV + + RG S
Sbjct: 156 GPEIKKTVRRVNWTRLDIAE--DRLILRIEANSFLTHQVRNTIGVLVELGRGTISMGEFG 213
Query: 232 -LIE-KTFGLDQFDLPMAPGLGLLLEQVHY 259
L E KT GL P AP GL L +V+Y
Sbjct: 214 ALFEAKTPGLAG---PAAPACGLSLVRVNY 240
>gi|448722324|ref|ZP_21704861.1| tRNA pseudouridine synthase A [Halococcus hamelinensis 100A6]
gi|445789808|gb|EMA40486.1| tRNA pseudouridine synthase A [Halococcus hamelinensis 100A6]
Length = 267
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 108/262 (41%), Gaps = 42/262 (16%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G Y G Q R + T+E + +AL + G V + + + P +
Sbjct: 3 AFRVAYDGRPYHGFQ----------RQPTVPTVEDTMFDALRELG-VLDATADKPSG--Y 49
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD+ VSA+ Q V+ P+ A+N LPE +R + GF++ ++ +RT
Sbjct: 50 AAAGRTDRRVSAVAQTVAFDAPDWLVPRALNSELPESVRAWAHADAPPGFHATHDAASRT 109
Query: 122 YSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRY 181
Y+Y A + + RL G H+FH+ T+ +
Sbjct: 110 YTYHLHAPAADVGRAGEACDRLA---------------GEHDFHDLTTDDR-------NT 147
Query: 182 IMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQ 241
+ + D V+ E + L ++ F + +R++ + A+A G +++ +
Sbjct: 148 VRALDVR---VEPDGEFLVLTVRAGGFSRNLVRRVGALVRAVATGEAPLAKVDRVLAPEP 204
Query: 242 FDLP----MAPGLGLLLEQVHY 259
D P AP GL+L V Y
Sbjct: 205 LDGPEGIGPAPAAGLVLTDVEY 226
>gi|424788383|ref|ZP_18215138.1| tRNA pseudouridine(38-40) synthase [Streptococcus intermedius BA1]
gi|422112886|gb|EKU16648.1| tRNA pseudouridine(38-40) synthase [Streptococcus intermedius BA1]
Length = 249
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 111/252 (44%), Gaps = 31/252 (12%)
Query: 22 FLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLK 81
F F R ++++ +I + L K N+ + + A RTD GV AL Q++
Sbjct: 15 FAGFQRQPHERSVQEEIEKTLIK--------INSGKQVVIHGAGRTDSGVHALGQVIHFD 66
Query: 82 LPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDT 137
LP++ ++E A++ PE I +S++ V F+S+ +++TY + P++
Sbjct: 67 LPQKRDEEKLRFALDTQTPEDIDFISVEEVDDKFHSRYRKHSKTYEFIVD---IGRPKNP 123
Query: 138 KDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLD---PSCSRYIMSFDCEQP 190
T P ++ + + EGTH+F FT+ ++ + +R + FD +
Sbjct: 124 MMRHYATHYPYPLDLKLMEKAIVKLEGTHDFTGFTASGTSVENKVRTITRAGLEFDENRN 183
Query: 191 FVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDL--PMAP 248
F + G F+ QIR MVG + I G + I++ L P A
Sbjct: 184 F-------LIFTFSGNGFLYKQIRNMVGTLLKIGNGRMPVEQIDRILIEQDRHLAGPTAA 236
Query: 249 GLGLLLEQVHYD 260
GL L+++ Y+
Sbjct: 237 PNGLYLKEIRYE 248
>gi|9652099|gb|AAF91402.1|AF266505_1 pseudouridine synthase 3 [Mus musculus]
Length = 481
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 116/288 (40%), Gaps = 66/288 (22%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K V + Q
Sbjct: 66 VALKIAYLGWGYQGFASQ---------ENTSNTIEEKLFEALTKTRLV-----ESRQTSN 111
Query: 61 FQRAARTDKGVSALKQIVSLKL---------PEEAN--------------KEAINEHLPE 97
+ R RTDKGVSA Q++SL L E++N +N LP
Sbjct: 112 YHRCGRTDKGVSAFGQVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPA 171
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IR+L+ V F+++ +C RTY Y P + D + + ++
Sbjct: 172 DIRVLAWAPVEPSFSARFSCLERTYRYFFP----------RADLDIAT-----MNYAAQK 216
Query: 158 YEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV----------KDGLELITLKIKGQS 207
Y GTH+F N + + + + C Q + ++ +L ++ GQ+
Sbjct: 217 YVGTHDFRNLC--KMDVANGVIDFQRTILCAQVQLVAQSPGEERRQEPFQLCQFEVIGQA 274
Query: 208 FMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
F+ HQ+R M+ + I +G ++I++ + + P P + +E
Sbjct: 275 FLYHQVRCMMAILFLIGQGMEKPEIIDELLNIQKN--PQKPQYSMAVE 320
>gi|448336302|ref|ZP_21525405.1| tRNA pseudouridine synthase A [Natrinema pallidum DSM 3751]
gi|445629415|gb|ELY82700.1| tRNA pseudouridine synthase A [Natrinema pallidum DSM 3751]
Length = 285
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 99/228 (43%), Gaps = 28/228 (12%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G Y G Q + + T+E + +AL +A V + + P +
Sbjct: 5 AFRIAYDGTDYHGFQRQP--------QPDIPTVENAVFDAL-RALAVLDPDADKPAG--Y 53
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSAL Q ++L++P+ A+N LP +R + F++ ++ + R
Sbjct: 54 AAAGRTDAGVSALAQTIALEVPDWLTPRALNAELPADVRAWAAADTPDEFHATHHASRRA 113
Query: 122 YSYTCPTYAFATPQD---TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSC 178
Y+Y + +A P D + D T +A GTH+ HN T P D +
Sbjct: 114 YTY----HLYAPPADAAPSDSDATATAVDDERFRAACDALSGTHDIHNLT----PDDRNT 165
Query: 179 SRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARG 226
R ++ E +DG + + + + F +R++V + A+ G
Sbjct: 166 ERS-LTIAAE----RDG-DYLVITVSAGGFARELVRRLVSLVRAVGAG 207
>gi|241713555|ref|XP_002412103.1| pseudouridylate synthase, putative [Ixodes scapularis]
gi|215505180|gb|EEC14674.1| pseudouridylate synthase, putative [Ixodes scapularis]
Length = 398
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 75/354 (21%), Positives = 141/354 (39%), Gaps = 74/354 (20%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ F Y G Y G + T+E + +AL + + +
Sbjct: 4 VALRFLYLGWNYDGY---------VVQEDTANTVEAALFQALQRTRL-----LDLRETSN 49
Query: 61 FQRAARTDKGVSALKQIVSLKL-------PEEANKEA--------------------INE 93
+ R RTDKGVSA Q++S+ L PE A +N
Sbjct: 50 YHRCGRTDKGVSAFSQVISIDLRSNLTEGPEGTAPSARSIHSVISVARSTELDYVKILNG 109
Query: 94 HLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQA 153
LP IR+L+ F+++ +C ARTY Y P + ++
Sbjct: 110 VLPPDIRVLAWAPAEPSFSARFDCQARTYRYFLPKGNLVVQR---------------MRE 154
Query: 154 LLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSF--------DCEQPFVKDGLELITLKIKG 205
K G H+F N + + +RY+ + E G +++ L+I G
Sbjct: 155 AAKLLVGEHDFRNLC--KMDVGNGVTRYVRRILSTELYDGEPEGDGGSSGYQMLCLEIVG 212
Query: 206 QSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQK 265
Q+F+ HQ+R +V + + + +G +++ K ++ P P G+ E + LY+ +
Sbjct: 213 QAFLWHQVRCIVAILLLVGQGLEEPEVVSKLLDVEAH--PCKPQYGMASE-IPLVLYDCQ 269
Query: 266 Y-GQDGMHESLHFHEVDKEVNE-FRHKFILPYLVKT---EITEKPMLAWLELLA 314
+ G D ++ V K + + + H+ + ++++ +I P +A E+L+
Sbjct: 270 FEGLDWRYDVAELTAVSKHLQKLWMHERVKSEMIRSMLKDIAGLPCMAGTEVLS 323
>gi|156369650|ref|XP_001628088.1| predicted protein [Nematostella vectensis]
gi|156215055|gb|EDO36025.1| predicted protein [Nematostella vectensis]
Length = 464
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 132/331 (39%), Gaps = 81/331 (24%)
Query: 33 TIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLPEEANK---- 88
T+E + +AL KA V + ++ + R RTDKGVSA Q++SL + +K
Sbjct: 105 TVEAHLFDALIKACLV-----KSRESCSYSRCGRTDKGVSAFGQVISLNVRTNLDKGPGV 159
Query: 89 -----------------------EAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYT 125
+ +N+ LP++IR+L+ V F+++ +C+ R Y Y
Sbjct: 160 ILRQESSVGRDTKGKTMKEILYVDILNKVLPKEIRVLAWAPVELDFDARFSCSYRKYKYL 219
Query: 126 CPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSC-----SR 180
P+ L D N K+ EG H+F NF +D + +R
Sbjct: 220 FPSA------------NLDIDLMNLAS---KKLEGEHDFRNFCK----MDVANGVIQFTR 260
Query: 181 YIMSFDC------------EQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFT 228
I SF E + G E+ I G +F+ HQ+R M+ + + + +G
Sbjct: 261 NITSFKVQKVSNATYSAPGENKAKQRGYEMCEAVICGSAFLWHQVRCMMSILLMVGQGLE 320
Query: 229 SKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKY-GQDGMHESLHFHEVDKEVNEF 287
++I+ + LD P P + E + LY+ Y G +++ V K + +
Sbjct: 321 QPEVID--WLLDIEKCPQRPQYNMASE-LPLVLYDCVYEGITWIYDPQVLESVTKNLQQL 377
Query: 288 RHKF---------ILPYLVKTEITEKPMLAW 309
+ + +L L EI P+ W
Sbjct: 378 WNTYATKATLAQELLASLDSAEIPGNPLTNW 408
>gi|350420811|ref|XP_003492633.1| PREDICTED: tRNA pseudouridine synthase 3-like [Bombus impatiens]
Length = 424
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 115/299 (38%), Gaps = 56/299 (18%)
Query: 33 TIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLPEEANKE--- 89
TIE + EAL K+ + + + + R RTDKGVS+ Q++S+ L + N E
Sbjct: 96 TIEEHLFEALIKSCCI-----ESRETSNYHRCGRTDKGVSSFSQVISIDLRSKLNPEDQC 150
Query: 90 ----------AINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKD 139
+N LP IR ++ + F+++ NC RTY Y P
Sbjct: 151 KLEDELPYCKILNRLLPSNIRCIAWCPASSNFSARFNCKFRTYKYFFPRGNL-------- 202
Query: 140 DFRLTPDQFNFLQALLKQYEGTHNFHNFTS----------KRKPLDPSCSRYIMSFDCEQ 189
+ + +K G H+F N +RK +D Y F
Sbjct: 203 -------NIDSMDKAVKYTIGEHDFRNICKMDVANGVTNYQRKVIDAKVCLYRRDFR--- 252
Query: 190 PFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPG 249
G ++ L I Q+F+ HQIR ++GV I +G ++I + +++ P P
Sbjct: 253 --NISGYDVCQLIITSQAFLWHQIRCLMGVLFLIGQGNEKPEIILELLDIEK--CPRKPQ 308
Query: 250 LGLL------LEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEIT 302
L L YD +D + ++ F + D +N + I L E T
Sbjct: 309 YNLAHEIPLNLWYCEYDTMEWYIDKDELINTIKFLQRDWTLNTVKSVMIENMLTDLEDT 367
>gi|148642915|ref|YP_001273428.1| tRNA pseudouridine synthase A [Methanobrevibacter smithii ATCC
35061]
gi|226708656|sp|A5ULI2.1|TRUA_METS3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|148551932|gb|ABQ87060.1| tRNA pseudouridine synthase A, TruA [Methanobrevibacter smithii
ATCC 35061]
Length = 290
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 108/245 (44%), Gaps = 45/245 (18%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A+ Y G + G Q R ++T+E +++ L K G++ + + +F
Sbjct: 5 ALKIGYIGTNFHGFQ----------RQPDLRTVEEELIYHLRKLGYIDD-----LKKSRF 49
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
+ A RTD GV +L ++S + +E IN LP+ I+IL+ V GF + R
Sbjct: 50 RIAGRTDAGVHSLGNVISFQSEKEVRVNEINNSLPDDIQILAKAPVRFGFKPR-YAEMRQ 108
Query: 122 YSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRY 181
Y Y FR D + L + + ++GTHNF NFT K + +R
Sbjct: 109 YRYVL--------------FRSDLDLYK-LNEVAEIFKGTHNFTNFT---KRFQKTTTRT 150
Query: 182 IMSFDC-----------EQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSK 230
I E P + D L + + I G+SF+ + +RKM+ V + +A G S
Sbjct: 151 IDDIKITKANLNDYHKKEFPNLHDTLSPVFVDIYGESFLWNMVRKMMRVFVDVAIGKLSL 210
Query: 231 DLIEK 235
+ +E+
Sbjct: 211 EKVEE 215
>gi|261350284|ref|ZP_05975701.1| tRNA pseudouridine synthase A [Methanobrevibacter smithii DSM 2374]
gi|288861068|gb|EFC93366.1| tRNA pseudouridine synthase A [Methanobrevibacter smithii DSM 2374]
Length = 288
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 108/245 (44%), Gaps = 45/245 (18%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A+ Y G + G Q R ++T+E +++ L K G++ + + +F
Sbjct: 5 ALKIGYIGTNFHGFQ----------RQPDLRTVEEELIYHLRKLGYIDD-----LKKSRF 49
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
+ A RTD GV +L ++S + +E IN LP+ I+IL+ V GF + R
Sbjct: 50 RIAGRTDAGVHSLGNVISFQSEKEVRVNEINNSLPDDIQILAKAPVRFGFKPR-YAEMRQ 108
Query: 122 YSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRY 181
Y Y FR D + L + + ++GTHNF NFT K + +R
Sbjct: 109 YRYVL--------------FRSDLDLYK-LNEVAEIFKGTHNFTNFT---KRFQKTTTRT 150
Query: 182 IMSFDC-----------EQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSK 230
I E P + D L + + I G+SF+ + +RKM+ V + +A G S
Sbjct: 151 IDDIKITKANLNDYHKKEFPNLHDTLSPVFVDIYGESFLWNMVRKMMRVFVDVAIGKLSL 210
Query: 231 DLIEK 235
+ +E+
Sbjct: 211 EKVEE 215
>gi|389576424|ref|ZP_10166452.1| pseudouridylate synthase I [Eubacterium cellulosolvens 6]
gi|389311909|gb|EIM56842.1| pseudouridylate synthase I [Eubacterium cellulosolvens 6]
Length = 271
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 95/217 (43%), Gaps = 15/217 (6%)
Query: 55 TPQNIQFQRAARTDKGVSALKQIVSL----KLPEEANKEAINEHLPEQIRILSIKRVTKG 110
T + I+ A+RTD GV A +V ++P + A+N LP+ I++ + V+
Sbjct: 42 TGEEIRTIGASRTDAGVHARGNVVVFDTKARMPGDKYSYALNPRLPDDIKVQLSREVSPD 101
Query: 111 FNSKNNCNARTYSYTCPTYAFATPQDTKDD----FRLTPDQFNFLQALLKQYEGTHNFHN 166
F+ + +TY Y P + F L D+ +QA + EGTH+F +
Sbjct: 102 FHPRYTDTVKTYEYRILNRRMPDPTRRLNTLFNYFSLDADR---MQAAARYLEGTHDFRS 158
Query: 167 F-TSKRKPLDPSCSRYIMSFDCEQPFVKDGLE-LITLKIKGQSFMLHQIRKMVGVAMAIA 224
F S D R I S + DG E LIT +I G F+ + +R + G + I
Sbjct: 159 FQASGETNPDKETVRTIYSASVTRGNAADGNEDLITFRITGNGFLYNMVRILAGTLIEIG 218
Query: 225 RGFTSKDLIEKTFGLDQFDL--PMAPGLGLLLEQVHY 259
RG + ++K D P AP GL L ++ Y
Sbjct: 219 RGKLEPEDMKKIMDARSRDAAGPTAPPQGLTLVEIRY 255
>gi|147669126|ref|YP_001213944.1| tRNA pseudouridine synthase A [Dehalococcoides sp. BAV1]
gi|146270074|gb|ABQ17066.1| tRNA pseudouridine synthase A [Dehalococcoides sp. BAV1]
Length = 246
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 117/270 (43%), Gaps = 43/270 (15%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
M+ Y G Y G Q +++G TI+G++ A+ K T + +
Sbjct: 1 MVIEYEGTRYSGFQ---------IQDKG-ATIQGELETAIRKL---------TSEQTRVS 41
Query: 63 RAARTDKGVSALKQIVSL----KLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ RTD GV A Q+VS L E K +N +LP I + + V + F+ +
Sbjct: 42 GSGRTDAGVHAAYQVVSYLTESSLGLEKIKGGLNYYLPPDIAVKEVHFVAENFDVRRRAI 101
Query: 119 ARTYSYTCPTYAFATP----QDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
+R YSY +P Q + ++L ++ K EG H+F F S L
Sbjct: 102 SREYSYHILNSKTRSPLARLQAWQVPYKL---DIKLMEQAFKMLEGEHDFIAFASG---L 155
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKD--- 231
P + + + + + + + + L+I+ SF+ HQ+R +GV + + RG S
Sbjct: 156 GPEIKKTVRRVNWTRLDIAE--DRLILRIEANSFLTHQVRNTIGVLVELGRGTISMGEFG 213
Query: 232 -LIE-KTFGLDQFDLPMAPGLGLLLEQVHY 259
L E KT GL P AP GL L +V+Y
Sbjct: 214 ALFEAKTPGLAG---PAAPACGLSLVRVNY 240
>gi|288904465|ref|YP_003429686.1| tRNA pseudouridylate synthase I [Streptococcus gallolyticus UCN34]
gi|306830500|ref|ZP_07463669.1| tRNA pseudouridine synthase A [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|306832735|ref|ZP_07465871.1| tRNA pseudouridine synthase A [Streptococcus bovis ATCC 700338]
gi|325977479|ref|YP_004287195.1| tRNA pseudouridine synthase A [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|336063600|ref|YP_004558459.1| tRNA pseudouridine synthase A [Streptococcus pasteurianus ATCC
43144]
gi|386337006|ref|YP_006033175.1| tRNA pseudouridine synthase A [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|288731190|emb|CBI12738.1| tRNA pseudouridylate synthase I [Streptococcus gallolyticus UCN34]
gi|304425084|gb|EFM28214.1| tRNA pseudouridine synthase A [Streptococcus bovis ATCC 700338]
gi|304427346|gb|EFM30449.1| tRNA pseudouridine synthase A [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325177407|emb|CBZ47451.1| tRNA pseudouridine synthase A [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|334279642|dbj|BAK27216.1| tRNA pseudouridine synthase A [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|334281800|dbj|BAK29373.1| tRNA pseudouridine synthase A [Streptococcus pasteurianus ATCC
43144]
Length = 249
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 104/250 (41%), Gaps = 25/250 (10%)
Query: 21 FFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSL 80
F F R ++++ ++ + L K N+ ++ A RTD GV A Q+V
Sbjct: 14 LFAGFQRQPSERSVQEELEKTLQK--------LNSGNPVKVHGAGRTDSGVHAYGQVVHF 65
Query: 81 KLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQD 136
LP+ + E ++ PE I ++ +++V+ F+++ N +++TY + P++
Sbjct: 66 DLPQARDVEKLRFGLDTQSPEDIDVVKVEQVSDEFHARYNKHSKTYEFLVDA---GRPKN 122
Query: 137 TKDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV 192
T P +Q +K GTH+F FT+ S + + +
Sbjct: 123 PMMRHYATHYPYPLDLTSMQEAIKDLVGTHDFTGFTAS----GTSVENKVRTITRATVAI 178
Query: 193 KDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDL--PMAPGL 250
D G F+ Q+R MVG + I G I+ DL P A G
Sbjct: 179 DDKTGFFVFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVSQIKTVLESKNRDLAGPTAAGN 238
Query: 251 GLLLEQVHYD 260
GL L++++YD
Sbjct: 239 GLYLKEINYD 248
>gi|312109293|ref|YP_003987609.1| tRNA pseudouridine synthase A [Geobacillus sp. Y4.1MC1]
gi|423718408|ref|ZP_17692590.1| tRNA pseudouridine synthase A [Geobacillus thermoglucosidans
TNO-09.020]
gi|311214394|gb|ADP72998.1| tRNA pseudouridine synthase A [Geobacillus sp. Y4.1MC1]
gi|383365218|gb|EID42519.1| tRNA pseudouridine synthase A [Geobacillus thermoglucosidans
TNO-09.020]
Length = 248
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 114/272 (41%), Gaps = 49/272 (18%)
Query: 5 FAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRA 64
+Y G +FG Q + G +T++G++ +AL + + + I+ +
Sbjct: 9 LSYDGTHFFGYQIQ----------PGKRTVQGELEQAL--------EQIHKGKAIRVTAS 50
Query: 65 ARTDKGVSALKQIVS----LKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNAR 120
RTD GV A Q++ L L E K+A+N LP+ I I + F+++ + A+
Sbjct: 51 GRTDAGVHAYGQVIHFDTFLSLSPEQWKKALNALLPDDIVIKDAQEAAPSFHARFSATAK 110
Query: 121 TYSYTCPT----------YAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSK 170
Y Y Y + P P + L+ EGTH+F +F S
Sbjct: 111 EYRYKVRIAQERDVFLRHYCYHYPY---------PLDMEAMGRALRLIEGTHDFTSFCSA 161
Query: 171 RKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSK 230
+ +D R I D V+D +L+ + G F+ + +R +VG + + +G S
Sbjct: 162 KTDVDDRV-RTIYKADMT---VRD--DLLEFRFIGNGFLYNMVRIIVGTILEVGQGKRSV 215
Query: 231 DLIEKTFGLD--QFDLPMAPGLGLLLEQVHYD 260
D I +F AP GL L +V+YD
Sbjct: 216 DSISSALAAKDRRFAGKTAPPQGLYLWKVYYD 247
>gi|449981133|ref|ZP_21817638.1| tRNA pseudouridine synthase A [Streptococcus mutans 5SM3]
gi|449176090|gb|EMB78456.1| tRNA pseudouridine synthase A [Streptococcus mutans 5SM3]
Length = 249
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 114/267 (42%), Gaps = 35/267 (13%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G + G Q R ++T++ +I + L + N+ Q ++
Sbjct: 7 IISYDGTNFSGFQ----------RQPQVRTVQEEIEKTLLR--------LNSGQAVKVHG 48
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV A Q++ LP+ + E ++ P+ I ++ +++V F+++ +
Sbjct: 49 AGRTDAGVHAYGQVIHFDLPQLRDLEKLRFGLDTQTPDDIDVIQVEQVADDFHARYQKHR 108
Query: 120 RTYSYTC----PTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+TY + P T +++ F+ ++A +K+ GTH+F FT+ ++
Sbjct: 109 KTYEFLVDLGRPKNPLMRHYATHFPYKV---DFSVVKAAIKKLRGTHDFTGFTASGTSVE 165
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
R I E+ D + G F+ Q+R MVG + I G D I++
Sbjct: 166 NKV-RTISRATVEK---DDKTGFLIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPIDQIDR 221
Query: 236 TF--GLDQFDLPMAPGLGLLLEQVHYD 260
G P A GL L+++ YD
Sbjct: 222 ILESGDRSLAGPTAASNGLYLKEIIYD 248
>gi|450050560|ref|ZP_21840344.1| tRNA pseudouridine synthase A [Streptococcus mutans NFSM1]
gi|449202513|gb|EMC03424.1| tRNA pseudouridine synthase A [Streptococcus mutans NFSM1]
Length = 249
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 115/268 (42%), Gaps = 37/268 (13%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G + G Q R M+T++ +I + L + N+ Q ++
Sbjct: 7 IISYDGTNFSGFQ----------RQPQMRTVQEEIEKTLLR--------LNSGQAVKIHG 48
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV A Q++ LP++ + E ++ P+ I ++ +++V F+++ +
Sbjct: 49 AGRTDAGVHAYGQVIHFDLPQQRDLEKLRFGLDTQTPDDIDVIQVEQVADDFHARYQKHR 108
Query: 120 RTYSYTC----PTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+TY + P T +++ F+ ++ +K+ GTH+F FT+ ++
Sbjct: 109 KTYEFLVDLGRPKNPLMRHYATHFPYKV---DFSVVKVAIKKLRGTHDFTGFTAAGTSVE 165
Query: 176 PSCSRYIMSFDCEQPFVKDG-LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
R I E KDG + G F+ Q+R MVG + I G + I+
Sbjct: 166 NKV-RTISRATVE----KDGKTGFLIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPINQID 220
Query: 235 KTF--GLDQFDLPMAPGLGLLLEQVHYD 260
+ G P A GL L+++ YD
Sbjct: 221 RILESGDRSLAGPTAASNGLYLKEIIYD 248
>gi|310777852|ref|YP_003966185.1| tRNA pseudouridine synthase A [Ilyobacter polytropus DSM 2926]
gi|309747175|gb|ADO81837.1| tRNA pseudouridine synthase A [Ilyobacter polytropus DSM 2926]
Length = 243
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 120/271 (44%), Gaps = 43/271 (15%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ + + Y G G+FG Q R +T++G+I AL + I
Sbjct: 4 IKIEYEYDGSGFFGFQ----------RQPSARTVQGEIESAL---------KVVLKEEIN 44
Query: 61 FQRAARTDKGVSALKQI----VSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ RTD+GV A Q+ S K+P + + A+ +PE I+I S+K V++ F+++ +
Sbjct: 45 LASSGRTDRGVHAYMQVSNFFTSSKIPLDRLEFAVKNLIPEDIKIHSMKNVSEEFHARFS 104
Query: 117 CNARTYSYT--CPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNF----TSK 170
+R Y Y AF T + ++ P++ L +L+ G HNF F S
Sbjct: 105 AKSRAYEYIMGWDRTAFETKYVSGIKGKVDPEK---LYKILEPIVGRHNFEGFRLTDCSG 161
Query: 171 RKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSK 230
+ P+ R I C G + + IKG +F+ QIR ++G A+A+ K
Sbjct: 162 KNPV-----RDISEIRC----YPKGENKLAVYIKGNAFLKSQIRIIMGTALAVYFEKRPK 212
Query: 231 D-LIEKTFGLDQFDLPM-APGLGLLLEQVHY 259
+ LI K D D + A G GL L + Y
Sbjct: 213 NYLINKLKNPDSKDEKIVADGSGLYLCDIEY 243
>gi|241890020|ref|ZP_04777318.1| tRNA pseudouridine synthase A [Gemella haemolysans ATCC 10379]
gi|241863642|gb|EER68026.1| tRNA pseudouridine synthase A [Gemella haemolysans ATCC 10379]
Length = 265
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 120/270 (44%), Gaps = 35/270 (12%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ ++ Y G Y G Q + TI+ +I ++L K ++++
Sbjct: 3 VVLLCRYDGSNYHGFQIQ----------PNNNTIQEEIEKSLKKI---------NKKDVR 43
Query: 61 FQRAARTDKGVSALKQIV----SLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ RTD GV A Q++ L +P+EA +A+N +P+ IRI+ ++ F+ + N
Sbjct: 44 LYMSGRTDSGVHAYGQVLHFDTDLNIPDEAWVKALNATIPKDIRIVGATSASEDFHVRYN 103
Query: 117 CNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNF--LQALLKQYEGTHNFHNFTSKRKPL 174
+TY Y P + + D FNF Q L+ + G H+F +F SK +
Sbjct: 104 STQKTYYYKLHIGREVDPFLLNYVGKHSFD-FNFEKAQEALQYFIGEHDFSSFCSKNSSV 162
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTS----K 230
+ R I S E+ + ++ +I G F+ + +R ++G +A G K
Sbjct: 163 EDKV-RTIYSLTMEKDLINPN--IVNFEITGNGFLYNMVRIIIGTIQNVAAGKYEANYVK 219
Query: 231 DLIEKTFGLDQFDLPMAPGLGLLLEQVHYD 260
+++EK QF P A GL L++V YD
Sbjct: 220 EILEKK--ERQFAGPKADAAGLYLKEVLYD 247
>gi|145356339|ref|XP_001422390.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582632|gb|ABP00707.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 286
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 123/274 (44%), Gaps = 36/274 (13%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A+ +Y G Y G Q + + + TI+ ++ AL K + + ++
Sbjct: 19 ALKISYDGERYNGFQYQ---------GEDVPTIQRELERALAKLTGIDR------ERLRL 63
Query: 62 QRAARTDKGVSALKQIVSL----KLPEEANK--EAINEHLPEQIRILSIKRVTKGFNSKN 115
A RTD GV A Q+ L E+ + +A+N LP+ IR+ + F+S+
Sbjct: 64 GAAGRTDAGVHARGQVAHFYCEKSLGEDLTRCQKAMNGMLPKDIRVDAFWEPHPLFHSRF 123
Query: 116 NCNARTYSYTCPTYAFATPQDTKDDFRL--TPDQFNFLQALLKQYEGTHNFHNF--TSKR 171
+ + +TY Y A ++P K ++ P L+ + + GT ++ F TS+
Sbjct: 124 HASGKTYHYYVDARATSSPFTRKYAHQVGWRPCDVELLRQAAQLFVGTMDYKGFCNTSRD 183
Query: 172 KP-LDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTS- 229
K D + +R I FD + DGL I L+++G F+ Q+R MVG + +A G
Sbjct: 184 KSNEDRNTTRTIRRFDVFEDAADDGL--IRLEVEGDGFLYRQVRNMVGALLVVASGKHDL 241
Query: 230 ---KDLIEKTFGLDQFDLPM-APGLGLLLEQVHY 259
+ LIE D+ PM AP GL L +V Y
Sbjct: 242 AYLRTLIETK---DRSRAPMGAPARGLFLHEVFY 272
>gi|407717698|ref|YP_006795103.1| tRNA pseudouridine synthase A [Leuconostoc carnosum JB16]
gi|407241454|gb|AFT81104.1| tRNA pseudouridine synthase A [Leuconostoc carnosum JB16]
Length = 255
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 67/263 (25%), Positives = 120/263 (45%), Gaps = 24/263 (9%)
Query: 6 AYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAA 65
+Y G +FG Q + + + +T++G++ +A V + + N + I+ A+
Sbjct: 9 SYDGSDFFGFQVQTKHGV-----ECQRTVQGELNKA------VNQMAKNPIEPIKVVGAS 57
Query: 66 RTDKGVSALKQIVSLKLP----EEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
RTD GV A Q+V LP E ++ +N LP I I +++V+ F+++ N +A+
Sbjct: 58 RTDTGVHAFGQVVHFDLPFNIHEIGVRKGLNTLLPRDILIQHVEKVSDNFHARFNTHAKR 117
Query: 122 YSYTCPTYAFATPQDTK--DDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCS 179
Y Y T + P K F+ D +Q L G H+F +F + +
Sbjct: 118 YIYRVSTQDYTDPFKRKYTGHFQWQLDT-KRIQLALPDLIGEHDFASFAASGNQTATTIR 176
Query: 180 RYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGL 239
+ D E +K+ + + +G +F+ +QIR MVGV + I G I + +
Sbjct: 177 TITRA-DVE---IKESDQELVFTFEGNAFLYNQIRIMVGVLLEIGNGRRDIHDIVRLIAV 232
Query: 240 DQFDLP--MAPGLGLLLEQVHYD 260
+ AP GL L++++YD
Sbjct: 233 KDREQARFTAPASGLYLDEIYYD 255
>gi|419841107|ref|ZP_14364485.1| tRNA pseudouridine synthase A [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
gi|386906126|gb|EIJ70871.1| tRNA pseudouridine synthase A [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
Length = 242
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 117/246 (47%), Gaps = 26/246 (10%)
Query: 22 FLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQI---- 77
F+ F R +T++G+I ++LF + I + RTD+GV A++Q+
Sbjct: 15 FMGFQRQPNQRTVQGEIEKSLFHI---------LREKIDLTSSGRTDRGVHAIQQVSNFF 65
Query: 78 VSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATP--Q 135
++ +P + A++ +LPE I +L ++ V F+++ + R+Y Y C T+ P
Sbjct: 66 TAVNIPSDRLFYALSRNLPEDILLLQVEEVDSEFHARFSAKTRSYRY-CITWK-KNPFEH 123
Query: 136 DTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDG 195
K + + FL+ +L+ + G HNF NF + + R I S E+ V++G
Sbjct: 124 RYKAYVKEKIESTEFLK-ILQVFVGKHNFQNFRLQDSAF-ANPMREIYSISVEE--VENG 179
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLP--MAPGLGLL 253
+ + I +F+ QIR M+G A+ + G D I + + + P +A GL
Sbjct: 180 M---NIDIVANAFLKSQIRIMIGTALQVYFGKVEGDRITRMLEELETEFPKYLADSSGLY 236
Query: 254 LEQVHY 259
L ++ Y
Sbjct: 237 LYRIEY 242
>gi|319955610|ref|YP_004166877.1| tRNA pseudouridine synthase a [Cellulophaga algicola DSM 14237]
gi|319424270|gb|ADV51379.1| tRNA pseudouridine synthase A [Cellulophaga algicola DSM 14237]
Length = 264
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 118/249 (47%), Gaps = 28/249 (11%)
Query: 27 RNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKL---P 83
+ G KTIE +++ L F+ D Q + A RTD VSAL L L P
Sbjct: 24 KQPGQKTIEAMLVKTL---KFILPD-----QKFKILGAGRTDAKVSALDAAFELYLDDTP 75
Query: 84 EEANKEAI---NEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCP----TYAFATPQD 136
E ++ + N++LP IRILS+ V + FN N + Y Y ++ F P
Sbjct: 76 IEVLEDFLALFNKNLPPDIRILSMTEVDESFNIIQNSKEKEYIYLFSFGEKSHPFCAPYL 135
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDC-EQPFVKDG 195
L D+ ++ + K +EGTHNF ++T++ + + R + S E ++
Sbjct: 136 VTFLDNLDLDK---MKTVAKYFEGTHNFKSYTARIQE-NTKVIRTVNSCGIIENKILEAN 191
Query: 196 L---ELITLKIKGQSFMLHQIRKMVGVAMAIARG-FTSKDLIEKTFGLDQFDLP-MAPGL 250
+ +KG+ FM +QIR M+GV + + +G + ++++ + LP +APG
Sbjct: 192 FFPEKSYAFHVKGEGFMRYQIRMMMGVLVQVGKGELSEEEVLNSLKEENNMQLPFVAPGS 251
Query: 251 GLLLEQVHY 259
GL+L QV +
Sbjct: 252 GLILNQVDF 260
>gi|448349227|ref|ZP_21538070.1| tRNA pseudouridine synthase A [Natrialba taiwanensis DSM 12281]
gi|445641013|gb|ELY94097.1| tRNA pseudouridine synthase A [Natrialba taiwanensis DSM 12281]
Length = 287
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 104/273 (38%), Gaps = 44/273 (16%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G Y G Q R + T+E ++ AL + + + + +
Sbjct: 3 AFRLAYDGTAYHGFQ----------RQPDVATVEDELFAALESLSVL---ATHADKPTGY 49
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSAL Q V+ P+ A+N LP IR + F++ ++ R
Sbjct: 50 AAAGRTDAGVSALAQTVAFDAPDWLTPRALNSDLPADIRAWAAADAPDEFHATHHARRRE 109
Query: 122 YSYTCPTYAFATPQD-----------TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSK 170
Y+Y +A P D T D R D + Q G H+FHN T
Sbjct: 110 YTYQL----YAPPADDVPRRSGTADSTGDPDRAVDD--DRFQRACHALSGDHDFHNLTPD 163
Query: 171 RKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSK 230
+ + S + + D E I + + F +R++V +A A+ G
Sbjct: 164 DRNTERSPT-LTATRDA---------EFIVVTVTAGGFARELVRRLVSLARAVGTGDAPL 213
Query: 231 DLIEKTFGLDQF----DLPMAPGLGLLLEQVHY 259
+ +E+ G + + AP L+L V Y
Sbjct: 214 EKVERALGPEPLPGHEGIAPAPPEPLVLTDVRY 246
>gi|320160443|ref|YP_004173667.1| tRNA pseudouridine synthase A [Anaerolinea thermophila UNI-1]
gi|319994296|dbj|BAJ63067.1| tRNA pseudouridine synthase A [Anaerolinea thermophila UNI-1]
Length = 259
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 117/269 (43%), Gaps = 42/269 (15%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
++ AY G + G Q R G +T++ ++ +AL G+ E ++
Sbjct: 6 VILAYDGTHFQGFQ----------RQAGARTVQAEVEKALRSLGWGEESLLSS------- 48
Query: 63 RAARTDKGVSALKQIVSLKLPE----EANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
RTD GV A Q+++ L EA + A+N LPE + ++ V F+ + N
Sbjct: 49 --GRTDTGVHASGQVIAFDLDWRHSLEALRNALNARLPEDVAAKQVEEVPGDFHPRFNAI 106
Query: 119 ARTYSYTCPTYAFATPQDTKDDFRLTP--DQFNFLQALLKQYEGTHNFHNFTSKRKPLD- 175
R Y Y P + +RL P + LQ+ + GTH+F F + P++
Sbjct: 107 ERAYLYRIIVAETRDPLRERYAWRLWPPLEAPEALQSAAQALCGTHDFSAFGT--PPVEG 164
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTS-KDLIE 234
S R+I + + +G E + +++G +F+ H +R+MV + + S D +E
Sbjct: 165 GSTLRHIYQAEWRE----NGDEWL-FEVRGNAFLYHMVRRMVWAQVQVGLNRLSLADFLE 219
Query: 235 KTFGLDQFDLPMAPGL----GLLLEQVHY 259
Q P+ PGL GL+L V Y
Sbjct: 220 AV----QQARPLPPGLAPAHGLVLTGVRY 244
>gi|327282044|ref|XP_003225754.1| PREDICTED: tRNA pseudouridine synthase 3-like [Anolis carolinensis]
Length = 455
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 118/280 (42%), Gaps = 53/280 (18%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G Y G S+ TIE + EAL K V Q
Sbjct: 66 VALKIAYLGWEYQGFASQ---------ENTNNTIEEKLFEALGKTRLVKNR-----QTSN 111
Query: 61 FQRAARTDKGVSALKQIVSL----KLPE------------EANKEA-----INEHLPEQI 99
+ R RTDKGVSA Q++SL LPE +A++E +N+ LP I
Sbjct: 112 YHRCGRTDKGVSAFGQVISLDLRSNLPENKPGDTATNKATKASEEIHYTHILNQVLPPDI 171
Query: 100 RILSIKRVTKGFNSKNNCNARTYSY--TCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
R+L+ V F+++ NC RTY Y C T A F T D N + +
Sbjct: 172 RVLAWAPVEPNFSARFNCLKRTYRYFFPCATLDVALMNRAAQKFVGTHDFRNLCK--MDV 229
Query: 158 YEGTHNFHN--FTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRK 215
G +FH ++ +P+D + EQ ++ + ++ GQ+F+ HQ+R
Sbjct: 230 ANGVTSFHRTILAAEVQPVDGES-------ETEQ---QNPFRMYYFEVTGQAFLYHQVRC 279
Query: 216 MVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE 255
M+ + I + ++I++ +++ P P + +E
Sbjct: 280 MMAILFLIGQRMERPEIIDELLDIEKN--PRKPQYSMAVE 317
>gi|399215855|emb|CCF72543.1| unnamed protein product [Babesia microti strain RI]
Length = 270
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 117/273 (42%), Gaps = 53/273 (19%)
Query: 5 FAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRA 64
++Y G Y G S Y +G+ T+E ++ AL K+G + + N + +
Sbjct: 18 YSYIGTNYHG--SAY--------QKGVDTVESHLINALTKSGLIVD-----IYNCDYCKC 62
Query: 65 ARTDKGVSALKQIVSL----KLPEE--ANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+RTDKGV A +SL +P+ N +N++LP I I I V F+ + +C
Sbjct: 63 SRTDKGVHARANYISLFALNNIPKLHLMNINRLNKYLPNDICITKIFPVHSTFSCRYDCK 122
Query: 119 ARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPS- 177
R Y Y F T + + + + G H+F F+ + + L S
Sbjct: 123 GRIYKYF---------------FNSTNLKICEMAEAAQLFIGEHDFKLFSKRNRGLTKST 167
Query: 178 ------CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTS-- 229
CS+ I F + GL + T IK +SF+ HQ+R M+G + I G +
Sbjct: 168 MYGNTNCSKEITEF--QIAAFASGLHVAT--IKARSFLWHQVRCMMGALIMIGSGQLTMQ 223
Query: 230 --KDLIEKTFGLDQFDLPMAPGLGLLLEQVHYD 260
D+++ + + MAP GLLL +D
Sbjct: 224 QLSDMLKLKSNVKCY--LMAPADGLLLYDCLFD 254
>gi|448299769|ref|ZP_21489776.1| tRNA pseudouridine synthase A [Natronorubrum tibetense GA33]
gi|445586923|gb|ELY41191.1| tRNA pseudouridine synthase A [Natronorubrum tibetense GA33]
Length = 287
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 115/270 (42%), Gaps = 40/270 (14%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G GY+G Q R + T+E I +AL + D+ + P +
Sbjct: 5 AFRVAYDGTGYYGFQ----------RQPDVLTVEDAIFDALRGLEVLAPDA-DKPDG--Y 51
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSAL Q V+L++PE A N LP IR + F++ ++ RT
Sbjct: 52 AAAGRTDAGVSALAQTVALEVPEWLTPRAFNAELPADIRAWAAADAADDFHATHHAAGRT 111
Query: 122 YSYTCPTYAFATPQ--------DTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKP 173
Y+Y + +A P+ DT + D F +A + G+H++HN T P
Sbjct: 112 YTY----HLYAPPEPAAPVGSIDTSNATERAVDDGRF-RAACEALSGSHDYHNLT----P 162
Query: 174 LDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLI 233
D + R M E +DG + + + + F +R++V +A + G I
Sbjct: 163 DDHNTERAPM---LEA--TRDG-DYLVVTVAASGFARELVRRLVSLARDVGTGAEPLAKI 216
Query: 234 EKTFGLDQF----DLPMAPGLGLLLEQVHY 259
++T D + AP L+L V Y
Sbjct: 217 DRTLDPDPLPGHEGIAPAPPEPLVLAAVDY 246
>gi|295093425|emb|CBK82516.1| pseudouridylate synthase I [Coprococcus sp. ART55/1]
Length = 247
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 109/273 (39%), Gaps = 50/273 (18%)
Query: 5 FAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRA 64
F+Y G Y G +SK T+EG I L + + A
Sbjct: 8 FSYDGTRYHGWESK----------TNADTVEGRIEAVLTRM---------VDAKVDIHGA 48
Query: 65 ARTDKGVSALKQIVSLKL-----PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
RTD GV A + + +L PEE K+ +N +LP I L + F+++ N
Sbjct: 49 GRTDAGVHARAMVANGRLETDKTPEEI-KDYLNRYLPADICALDVAVAGDRFHARLNATG 107
Query: 120 RTYSYTC----------PTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTS 169
+ Y YT Y + PQ + D + ++L G H+F +F
Sbjct: 108 KVYEYTLYVGAEKPVFDRNYVWCVPQGSALDVDVMKKAASYLV-------GKHDFRSFCG 160
Query: 170 KRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTS 229
K + S R I D VK+G + + ++ G F+ + +R + G + + G S
Sbjct: 161 NNK-MKKSTVRTIYDVD----IVKEG-DYVRMRFHGNGFLQNMVRILTGTLVEVGYGNMS 214
Query: 230 KDLI-EKTFGLD-QFDLPMAPGLGLLLEQVHYD 260
+ I E G+D Q P AP GL L +V YD
Sbjct: 215 AEHIPEIIAGMDRQLAGPTAPPHGLCLMKVEYD 247
>gi|421489779|ref|ZP_15937155.1| tRNA pseudouridine(38-40) synthase [Streptococcus anginosus SK1138]
gi|400374367|gb|EJP27286.1| tRNA pseudouridine(38-40) synthase [Streptococcus anginosus SK1138]
Length = 249
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 113/252 (44%), Gaps = 31/252 (12%)
Query: 22 FLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLK 81
F F R ++++ +I + L K N + + A RTD GV AL Q++
Sbjct: 15 FAGFQRQPHARSVQEEIEKTLTK--------INRGKPVIVHGAGRTDSGVHALGQVIHFD 66
Query: 82 LPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDT 137
LP++ + E A++ PE I +S++ V + F+S+ +++TY + P++
Sbjct: 67 LPQKRDGEKLRFALDTQTPEDIDFISVEEVNEAFHSRYCKHSKTYEFIV---DIGRPKNP 123
Query: 138 KDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLD---PSCSRYIMSFDCEQP 190
+ T P + ++ +++ EGTH+F FT+ ++ + + + FD ++
Sbjct: 124 MMRYYATHYPYPLDLSLIEEAIEKLEGTHDFTGFTASGTSVENKVRTITEARLDFDEKRN 183
Query: 191 FVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDL--PMAP 248
F + G F+ QIR MVG + I G + I++ L P A
Sbjct: 184 F-------LIFTFSGNGFLYKQIRNMVGTLLKIGNGRMPVEQIDRILTEKDRHLAGPTAA 236
Query: 249 GLGLLLEQVHYD 260
GL L+++ Y+
Sbjct: 237 PNGLYLKEIRYE 248
>gi|255938179|ref|XP_002559860.1| Pc13g14530 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211584480|emb|CAP92522.1| Pc13g14530 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 548
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 119/269 (44%), Gaps = 48/269 (17%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNT--PQN 58
+A+ FAY G Y GL+ + T+E + +AL + ++ ++ + P +
Sbjct: 117 IALKFAYLGQAYNGLEHTN------GNTTPLPTVEEVLWKALRRTRLISPETTSDLEPSD 170
Query: 59 ----------------IQFQRAARTDKGVSALKQIVSLKL-PEEANK-EAINEHLPEQIR 100
++ +A RTDKGVSA Q++ L++ +E N +N LPE IR
Sbjct: 171 RAERVPMRPYHLYWDGCEYSKAGRTDKGVSAFGQVIGLRVRTDEMNYINVLNRVLPEDIR 230
Query: 101 ILS-IKRVTKGFNSKNNCNARTYSYTCPTYAFA-TP------------QDTKDDFRLTPD 146
+L+ GF+++ +C R Y Y AF+ TP + +FR
Sbjct: 231 VLAWCPNPPPGFDARFSCRERRYKYFFTNPAFSPTPGSIGFQNRAQNGNGPRAEFREGWL 290
Query: 147 QFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFD--CEQPFVKDGLELITLKIK 204
++ K +EG+H+F NF LD ++ I +F+ + ++ + +
Sbjct: 291 DIEAMREAAKHFEGSHDFRNFCK----LD--TNKQIDNFERIIHHSISQSIPQVYSFNLH 344
Query: 205 GQSFMLHQIRKMVGVAMAIARGFTSKDLI 233
G +F+ HQ+R MV + + +G S ++
Sbjct: 345 GSAFLWHQVRHMVAILFLVGQGLESPSIV 373
>gi|170017912|ref|YP_001728831.1| tRNA pseudouridine synthase A [Leuconostoc citreum KM20]
gi|414596266|ref|ZP_11445842.1| tRNA pseudouridine synthase A [Leuconostoc citreum LBAE E16]
gi|421876113|ref|ZP_16307673.1| tRNA pseudouridine synthase A [Leuconostoc citreum LBAE C10]
gi|421878492|ref|ZP_16309972.1| tRNA pseudouridine synthase A [Leuconostoc citreum LBAE C11]
gi|238688937|sp|B1MVY3.1|TRUA_LEUCK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|169804769|gb|ACA83387.1| tRNA pseudouridine synthase A [Leuconostoc citreum KM20]
gi|372558148|emb|CCF23793.1| tRNA pseudouridine synthase A [Leuconostoc citreum LBAE C10]
gi|390447619|emb|CCF26092.1| tRNA pseudouridine synthase A [Leuconostoc citreum LBAE C11]
gi|390483199|emb|CCF27903.1| tRNA pseudouridine synthase A [Leuconostoc citreum LBAE E16]
Length = 260
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 121/265 (45%), Gaps = 26/265 (9%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ AY G +FG Q + + +T++G++ +A V + + I+
Sbjct: 7 IVAYDGSNFFGFQVQTK-----SGVEVQRTVQGELNKA------VNQMAKQPVTPIKVVG 55
Query: 64 AARTDKGVSALKQIVSLKLPEEAN----KEAINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A+RTD GV A Q+V LP + N + +N LP I I ++ +V+ F+++ + +A
Sbjct: 56 ASRTDTGVHAFGQVVHFDLPFDINPVGVSKGLNTLLPRDILIKAVTKVSDDFHARFSTHA 115
Query: 120 RTYSYTCPTYAFATP--QDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPS 177
+ Y Y T AF P + F D + +Q L G H+F +F + S
Sbjct: 116 KRYFYRVSTTAFTDPFKRHYTGHFHWHLDT-SRIQEALPDLIGEHDFASFAASGNQT-AS 173
Query: 178 CSRYIMSFD-CEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKT 236
R I S E+P D EL+ + +G +F+ +QIR MVGV + I G I++
Sbjct: 174 TVRTITSAQLIEKP---DEQELVFV-FEGNAFLYNQIRIMVGVLLEIGNGRREIHDIQRL 229
Query: 237 FGLDQFDLP--MAPGLGLLLEQVHY 259
+ + AP GL L+++ Y
Sbjct: 230 IAVKDREQARFTAPASGLYLDEIDY 254
>gi|66807627|ref|XP_637536.1| hypothetical protein DDB_G0286567 [Dictyostelium discoideum AX4]
gi|60465972|gb|EAL64039.1| hypothetical protein DDB_G0286567 [Dictyostelium discoideum AX4]
Length = 615
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 93/185 (50%), Gaps = 34/185 (18%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
MA+ FAY+G Y+G S Y F + F IE I ++L + G + ++ + I+
Sbjct: 150 MALCFAYNGSKYYG--SSYSFDIRFP------AIENLIEKSLIRNGHIALENIGNLKRIK 201
Query: 61 FQRAARTDKGVSALKQIVS--LKLPEEANKEA------------INEHLPEQIRILSIKR 106
R++RTDKGV ++ ++S L + +E + A IN +LP IR++S +
Sbjct: 202 LSRSSRTDKGVHSVSTVISAFLLIDKETERLAQFGTPPQYFIDNINRYLPSDIRLISATK 261
Query: 107 VTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHN 166
++ F ++ +R Y+Y P KD ++ D+ N ++L + GT +FHN
Sbjct: 262 PSRTFRARPASKSRVYNYLVPM------DHLKD---ISIDRMN---SILSNFIGTSSFHN 309
Query: 167 FTSKR 171
+T +R
Sbjct: 310 YTYQR 314
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 66/128 (51%), Gaps = 12/128 (9%)
Query: 175 DPSCSRYIMSFDCEQPFVK-DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLI 233
+P R IM+F E+ V +G + + G SF+++QIRKM+G +++ +G+ ++ +
Sbjct: 391 NPVNVRTIMNFYVEKETVLFEGKQWYRFVVVGDSFLMYQIRKMMGFFLSVVKGYQNEIGL 450
Query: 234 EKTFGLDQFDL--PMAPGLGLLLEQVHYDL------YNQKYGQDGMHESL--HFHEVDKE 283
+ + F + P++P L L V++ +++ + ++ L H H+++ E
Sbjct: 451 QLSLK-SPFSICSPISPPFPLFLYDVNFPREKILLPVSRQIQNEFLNSKLMPHLHKIENE 509
Query: 284 VNEFRHKF 291
N+F F
Sbjct: 510 TNQFSEFF 517
>gi|419776017|ref|ZP_14301940.1| tRNA pseudouridine(38-40) synthase [Streptococcus intermedius SK54]
gi|383846225|gb|EID83624.1| tRNA pseudouridine(38-40) synthase [Streptococcus intermedius SK54]
Length = 249
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 111/252 (44%), Gaps = 31/252 (12%)
Query: 22 FLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLK 81
F F R ++++ +I + L K N + + A RTD GV AL+Q++
Sbjct: 15 FAGFQRQPHERSVQEEIEKTLIK--------INGGKQVVIHGAGRTDSGVHALEQVIHFD 66
Query: 82 LPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDT 137
LP++ ++E A++ PE I +S++ V F+S+ +++TY + P++
Sbjct: 67 LPQKRDEEKLRFALDTQTPEDIDFISVEEVDDKFHSRYWKHSKTYEFIVD---IGRPKNP 123
Query: 138 KDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLD---PSCSRYIMSFDCEQP 190
T P ++ + + EGTH+F FT+ ++ + +R + FD +
Sbjct: 124 MMRHYATHYPYPLDLKLMEKAIVKLEGTHDFTGFTASGTSVENKVRTITRARLEFDENRN 183
Query: 191 FVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDL--PMAP 248
F + G F+ QIR MVG + I G + I++ L P A
Sbjct: 184 F-------LIFTFSGNGFLYKQIRNMVGTLLKIGNGRMPVEQIDRILIEQDRHLAGPTAA 236
Query: 249 GLGLLLEQVHYD 260
GL L+++ Y+
Sbjct: 237 PNGLYLKEIRYE 248
>gi|374337298|ref|YP_005093999.1| tRNA pseudouridine synthase A [Streptococcus macedonicus ACA-DC
198]
gi|372283399|emb|CCF01576.1| tRNA pseudouridine synthase A [Streptococcus macedonicus ACA-DC
198]
Length = 249
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 92/228 (40%), Gaps = 29/228 (12%)
Query: 49 TEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSI 104
T N+ ++ A RTD GV A Q+V LP+ + E ++ PE I ++ +
Sbjct: 34 TLQKLNSGNPVKVHGAGRTDSGVHAYGQVVHFDLPQARDVEKLRFGLDTQSPEDIDVVKV 93
Query: 105 KRVTKGFNSKNNCNARTYSYTCPT----------YAFATPQDTKDDFRLTPDQFNFLQAL 154
++V+ F+++ N +++TY + YA P P +Q
Sbjct: 94 EQVSDEFHARYNKHSKTYEFLVDAGRPKNPMMRHYAMHYPY---------PLDLISMQEA 144
Query: 155 LKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIR 214
+K GTH+F FT+ S + + + D G F+ Q+R
Sbjct: 145 IKDLVGTHDFTGFTAS----GTSVENKVRTITRATVAIDDKTGFFVFTFSGNGFLYKQVR 200
Query: 215 KMVGVAMAIARGFTSKDLIEKTFGLDQFDL--PMAPGLGLLLEQVHYD 260
MVG + I G I+ DL P A G GL L++V+YD
Sbjct: 201 NMVGTLLKIGNGRMPVSQIKTVLESKNRDLAGPTAAGNGLYLKEVNYD 248
>gi|333373218|ref|ZP_08465134.1| tRNA pseudouridine synthase A [Desmospora sp. 8437]
gi|332970797|gb|EGK09777.1| tRNA pseudouridine synthase A [Desmospora sp. 8437]
Length = 258
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 116/276 (42%), Gaps = 41/276 (14%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ + AY G + G Q R G +T++G + E L + T + I
Sbjct: 4 IKLTVAYDGTDFSGFQ----------RQPGKRTVQGTLEETLTRV---------TGETIS 44
Query: 61 FQRAARTDKGVSALKQIV----SLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
A RTD GV AL Q++ S+ +P E +N LP + + K V + F+++ +
Sbjct: 45 VTGAGRTDAGVHALGQVIHFETSVPIPTERWVRLLNASLPRDLLVTQAKEVPREFHARYD 104
Query: 117 CNARTYSY---TCPTY-AFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRK 172
+ Y Y TCP F T L+ D+ +Q + GTH+F +F++ R
Sbjct: 105 ACWKHYRYTLDTCPIPDLFRRRYQTHYPHPLSRDR---MQRAARHLTGTHDFTSFSAARA 161
Query: 173 PLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDL 232
+ R + CE V G ++++++ G F+ H +R + G + I G D
Sbjct: 162 QVK---DRRRSLYHCEVKEVNPG--VLSIEVVGDGFLYHMVRILTGTLVEIGAGKIPPDE 216
Query: 233 IEKTFGLDQFDLPMA----PGLGLLLEQVHYDLYNQ 264
I L D A P GL++ +V Y + +
Sbjct: 217 IRGI--LKAKDRSAAGKTFPPEGLVMVEVGYTPWER 250
>gi|340755327|ref|ZP_08692017.1| tRNA pseudouridine synthase A [Fusobacterium sp. D12]
gi|421500261|ref|ZP_15947272.1| tRNA pseudouridine(38-40) synthase [Fusobacterium necrophorum
subsp. funduliforme Fnf 1007]
gi|313687154|gb|EFS23989.1| tRNA pseudouridine synthase A [Fusobacterium sp. D12]
gi|402268675|gb|EJU18041.1| tRNA pseudouridine(38-40) synthase [Fusobacterium necrophorum
subsp. funduliforme Fnf 1007]
Length = 242
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 117/246 (47%), Gaps = 26/246 (10%)
Query: 22 FLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQI---- 77
F+ F R +T++G+I ++LF + I + RTD+GV A++Q+
Sbjct: 15 FMGFQRQPNQRTVQGEIEKSLFHI---------LREKIDLTSSGRTDRGVHAIQQVSNFF 65
Query: 78 VSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATP--Q 135
++ +P + A++ +LPE I +L ++ V F+++ + R+Y Y C T+ P
Sbjct: 66 TAVNIPSDRLFYALSRNLPEDILLLQVEEVDSEFHARFSAKTRSYRY-CITWK-KNPFEH 123
Query: 136 DTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDG 195
K + + FL+ +L+ + G HNF NF + + R I S E+ V++G
Sbjct: 124 RYKAYVKEKIESTEFLK-ILQVFIGRHNFQNFRLQDSSF-ANPMREIYSISVEE--VENG 179
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLP--MAPGLGLL 253
+ + I +F+ QIR M+G A+ + G D I + + + P +A GL
Sbjct: 180 M---NIDIVANAFLKSQIRIMIGTALQVYFGKVEGDRITRMLEELETEFPKYLADSSGLY 236
Query: 254 LEQVHY 259
L ++ Y
Sbjct: 237 LYRIEY 242
>gi|296004937|ref|XP_002808812.1| pseudouridylate synthase, putative [Plasmodium falciparum 3D7]
gi|225632204|emb|CAX64089.1| pseudouridylate synthase, putative [Plasmodium falciparum 3D7]
Length = 556
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 91/178 (51%), Gaps = 8/178 (4%)
Query: 143 LTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLK 202
L ++ N + Y G HNFH FT +K +D + R+I FD + D +++K
Sbjct: 372 LNEEELNTFFDIFNNYVGYHNFHCFT--KKKIDQTTYRFIKYFDVSTVKLFD-YHFLSVK 428
Query: 203 IKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMA--PGLGLLLEQVHYD 260
I GQSF++HQIRKM+ +A+ R TS + I + +P+ P GL+L +++
Sbjct: 429 ILGQSFLMHQIRKMITLAVETYRKATSINSIYYCLNTKNY-IPITLFPSDGLMLICPYFN 487
Query: 261 LYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF 318
YN+K + ++F E + ++ EF+ I +++ ++ + WL+ + H F
Sbjct: 488 AYNEKVCKQPHTLPIYFEETE-DIMEFKKNKIGKCIIE-KMKQNVWKEWLQRINKHPF 543
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 91 INEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQ 135
+N+HLP I+ I +VTK F+++ C+ R Y Y P Y + Q
Sbjct: 223 LNDHLPCDIKCFKIYKVTKSFDARKFCSFRFYEYLFPVYVLSEVQ 267
>gi|260495597|ref|ZP_05815722.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_33]
gi|260196939|gb|EEW94461.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_33]
Length = 245
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 115/271 (42%), Gaps = 43/271 (15%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ + F Y G Y+G Q R T++G+I + L T + I
Sbjct: 6 IKIEFRYDGSRYYGFQ----------RQPNKITVQGEIEKIL---------RIVTKEEIN 46
Query: 61 FQRAARTDKGVSALKQI----VSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
A RTD+GV A Q+ S +P E K + LP I ILS++ V K FN+++N
Sbjct: 47 LISAGRTDRGVHANHQVSNFYTSSTIPIEKYKYLLTRALPNDIDILSVEEVDKNFNARHN 106
Query: 117 CNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNF--LQALLKQYEGTHNFHNFTSKRKPL 174
R Y Y P + + ++ ++ + L+ + + G H+F NF L
Sbjct: 107 AKMREYVYIISWE--KNPFEAR-YYKFVKEKIDVRKLEKIFSDFVGVHDFKNFR-----L 158
Query: 175 DPSCSRYIMS--FDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDL 232
+ S+ + + E + G I + IKG +F+ Q+R MVG A+ I G ++
Sbjct: 159 NDCVSKVTIRKIYQIEVKYF--GESKIKIYIKGSAFLKSQVRIMVGTALEIYYGRLPENH 216
Query: 233 IEKTFGLDQFDLPMAPGL----GLLLEQVHY 259
I L+ F L GL L +++Y
Sbjct: 217 IR--LMLNDFTREYKKNLVEAEGLYLNKINY 245
>gi|410476973|ref|YP_006743732.1| tRNA-pseudouridine synthase I [Streptococcus pneumoniae gamPNI0373]
gi|444387096|ref|ZP_21185122.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PCS125219]
gi|444389302|ref|ZP_21187219.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PCS70012]
gi|444393635|ref|ZP_21191271.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PCS81218]
gi|444394589|ref|ZP_21192140.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0002]
gi|444398045|ref|ZP_21195528.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0006]
gi|444398888|ref|ZP_21196363.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0007]
gi|444402597|ref|ZP_21199756.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0008]
gi|444405386|ref|ZP_21202291.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0009]
gi|444407663|ref|ZP_21204330.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0010]
gi|444418829|ref|ZP_21214780.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0360]
gi|444419855|ref|ZP_21215690.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0427]
gi|406369918|gb|AFS43608.1| tRNA-pseudouridine synthase I [Streptococcus pneumoniae gamPNI0373]
gi|444254306|gb|ELU60752.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PCS125219]
gi|444257902|gb|ELU64235.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PCS70012]
gi|444258241|gb|ELU64568.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PCS81218]
gi|444259831|gb|ELU66140.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0002]
gi|444260702|gb|ELU67010.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0006]
gi|444266183|gb|ELU72151.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0008]
gi|444269624|gb|ELU75428.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0007]
gi|444271259|gb|ELU77010.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0010]
gi|444273832|gb|ELU79493.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0009]
gi|444280050|gb|ELU85427.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0360]
gi|444286041|gb|ELU91047.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0427]
Length = 249
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 106/249 (42%), Gaps = 25/249 (10%)
Query: 22 FLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLK 81
F F R ++++ +I + L + N Q I A RTD GV AL Q++
Sbjct: 15 FTGFQRQPHARSVQEEIEKTLTR--------LNKGQAITVHGAGRTDSGVHALGQVIHFD 66
Query: 82 LPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDT 137
LP + ++E A++ PE I ++SI+ V F+ + +++TY +T P++
Sbjct: 67 LPYQMDEEKLRFALDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFTVDR---GRPKNP 123
Query: 138 KDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVK 193
T P +Q +K+ EGTH+F FT+ S + + V
Sbjct: 124 MRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTAS----GTSVEDKVRTITEASLIVD 179
Query: 194 DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD--QFDLPMAPGLG 251
+ + +T G F+ QIR MVG + I + I+ Q P A G
Sbjct: 180 ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPNG 239
Query: 252 LLLEQVHYD 260
L L+++ Y+
Sbjct: 240 LYLKEIRYE 248
>gi|15901439|ref|NP_346043.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae TIGR4]
gi|111656856|ref|ZP_01407696.1| hypothetical protein SpneT_02001886 [Streptococcus pneumoniae
TIGR4]
gi|149013277|ref|ZP_01834035.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP19-BS75]
gi|168486863|ref|ZP_02711371.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CDC1087-00]
gi|225859353|ref|YP_002740863.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 70585]
gi|303253960|ref|ZP_07340080.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae BS455]
gi|303258528|ref|ZP_07344508.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP-BS293]
gi|303262617|ref|ZP_07348557.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP14-BS292]
gi|303263556|ref|ZP_07349478.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae BS397]
gi|303267576|ref|ZP_07353421.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae BS457]
gi|303269928|ref|ZP_07355667.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae BS458]
gi|387626815|ref|YP_006062991.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae INV104]
gi|387759720|ref|YP_006066698.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae INV200]
gi|418112939|ref|ZP_12749939.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA41538]
gi|418130756|ref|ZP_12767639.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA07643]
gi|418139930|ref|ZP_12776755.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA13338]
gi|418167200|ref|ZP_12803855.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA17971]
gi|418180961|ref|ZP_12817530.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA41688]
gi|418185339|ref|ZP_12821880.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47283]
gi|418187590|ref|ZP_12824113.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47360]
gi|418200765|ref|ZP_12837208.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47976]
gi|418230383|ref|ZP_12856982.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae EU-NP01]
gi|419478247|ref|ZP_14018071.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA18068]
gi|419510861|ref|ZP_14050502.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae NP141]
gi|419515115|ref|ZP_14054740.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae
England14-9]
gi|419524064|ref|ZP_14063639.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA13723]
gi|419530531|ref|ZP_14070058.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA40028]
gi|421213529|ref|ZP_15670484.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2070108]
gi|421215705|ref|ZP_15672626.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2070109]
gi|421247864|ref|ZP_15704344.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2082170]
gi|421268763|ref|ZP_15719632.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SPAR95]
gi|421271021|ref|ZP_15721875.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SPAR48]
gi|421296440|ref|ZP_15747149.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA58581]
gi|444382854|ref|ZP_21181053.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PCS8106]
gi|444385720|ref|ZP_21183791.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PCS8203]
gi|444414193|ref|ZP_21210485.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0199]
gi|25453312|sp|Q97PL0.1|TRUA_STRPN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|254764867|sp|C1C8I7.1|TRUA_STRP7 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|14973090|gb|AAK75683.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae TIGR4]
gi|147762942|gb|EDK69888.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP19-BS75]
gi|183570198|gb|EDT90726.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CDC1087-00]
gi|225721425|gb|ACO17279.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 70585]
gi|301794601|emb|CBW37047.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae INV104]
gi|301802309|emb|CBW35063.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae INV200]
gi|302599048|gb|EFL66074.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae BS455]
gi|302636173|gb|EFL66668.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP14-BS292]
gi|302640029|gb|EFL70484.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP-BS293]
gi|302640531|gb|EFL70939.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae BS458]
gi|302642899|gb|EFL73201.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae BS457]
gi|302646594|gb|EFL76819.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae BS397]
gi|353783301|gb|EHD63730.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA41538]
gi|353802080|gb|EHD82380.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA07643]
gi|353829192|gb|EHE09326.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA17971]
gi|353843033|gb|EHE23078.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA41688]
gi|353848623|gb|EHE28635.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47283]
gi|353849575|gb|EHE29580.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47360]
gi|353864306|gb|EHE44224.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47976]
gi|353885264|gb|EHE65053.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae EU-NP01]
gi|353904709|gb|EHE80159.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA13338]
gi|379556472|gb|EHZ21527.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA13723]
gi|379565683|gb|EHZ30675.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA18068]
gi|379573439|gb|EHZ38394.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA40028]
gi|379631464|gb|EHZ96041.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae NP141]
gi|379635664|gb|EIA00223.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae
England14-9]
gi|395579283|gb|EJG39787.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2070108]
gi|395579912|gb|EJG40407.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2070109]
gi|395613143|gb|EJG73174.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2082170]
gi|395867235|gb|EJG78359.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SPAR48]
gi|395869017|gb|EJG80133.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SPAR95]
gi|395895313|gb|EJH06288.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA58581]
gi|444249398|gb|ELU55889.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PCS8203]
gi|444251223|gb|ELU57695.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PCS8106]
gi|444282845|gb|ELU88077.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0199]
Length = 249
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 106/249 (42%), Gaps = 25/249 (10%)
Query: 22 FLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLK 81
F F R ++++ +I + L + N Q I A RTD GV AL Q++
Sbjct: 15 FAGFQRQPHARSVQEEIEKTLTR--------LNKGQAITVHGAGRTDSGVHALGQVIHFD 66
Query: 82 LPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDT 137
LP + ++E A++ PE I ++SI+ V F+ + +++TY +T P++
Sbjct: 67 LPYQMDEEKLRFALDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFTVDR---GRPKNP 123
Query: 138 KDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVK 193
T P +Q +K+ EGTH+F FT+ S + + V
Sbjct: 124 MRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTAS----GTSVEDKVRTITEASLIVD 179
Query: 194 DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD--QFDLPMAPGLG 251
+ + +T G F+ QIR MVG + I + I+ Q P A G
Sbjct: 180 ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPNG 239
Query: 252 LLLEQVHYD 260
L L+++ Y+
Sbjct: 240 LYLKEIRYE 248
>gi|422933756|ref|ZP_16966531.1| tRNA pseudouridine synthase A [Fusobacterium nucleatum subsp.
animalis ATCC 51191]
gi|339891337|gb|EGQ80330.1| tRNA pseudouridine synthase A [Fusobacterium nucleatum subsp.
animalis ATCC 51191]
Length = 245
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 113/269 (42%), Gaps = 39/269 (14%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ + F Y G Y+G Q R T++G+I + L T + I
Sbjct: 6 IKIEFRYDGSRYYGFQ----------RQPNKITVQGEIEKIL---------RIVTKEEIN 46
Query: 61 FQRAARTDKGVSALKQI----VSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
A RTD+GV A Q+ S +P E K + LP I ILS++ V + FN+++N
Sbjct: 47 LISAGRTDRGVHAYHQVSNFYTSSNIPIEKYKYLLTRALPNDIDILSVEEVDENFNARHN 106
Query: 117 CNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNF--LQALLKQYEGTHNFHNFTSKRKPL 174
R Y Y P + + + D+ + L+ + + G H+F NF L
Sbjct: 107 AKMREYIYIIS--WIKNPFEAR-YCKFVKDKIDVRKLEKIFSDFVGVHDFKNFR-----L 158
Query: 175 DPSCSRYIMS--FDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDL 232
+ S+ + + E + G I + IKG +F+ Q+R MVG A+ I G ++
Sbjct: 159 NDCVSKVTIREIYQIEVKYF--GESKIKIYIKGSAFLKSQVRIMVGTALEIYYGRLPENH 216
Query: 233 IEKTFG--LDQFDLPMAPGLGLLLEQVHY 259
I ++ + GL L +++Y
Sbjct: 217 IRLMLNDFTREYKKNLVEAEGLYLNKINY 245
>gi|383785096|ref|YP_005469666.1| pseudouridylate synthase [Leptospirillum ferrooxidans C2-3]
gi|383084009|dbj|BAM07536.1| putative pseudouridylate synthase [Leptospirillum ferrooxidans
C2-3]
Length = 257
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 121/278 (43%), Gaps = 47/278 (16%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
MA + +Y G + G Q R ++I+G I EAL K P NI
Sbjct: 1 MAFITSYDGREFHGWQ----------RQGSDQSIQGTIEEALHKLT-------GMPLNIT 43
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK--------EAINEHLPEQIRILSIKRVTKGFN 112
+ RTD GVSA Q+ L +P N+ + +N LP++IRILS + F+
Sbjct: 44 --GSGRTDAGVSAHGQVFHLDIPIRGNRPWTPESLLKGVNHFLPQRIRILSATHTAQTFH 101
Query: 113 SKNNCNARTYSY---TCPTYAFATPQDTK-DDFRLTPDQFNFLQALLKQYEGTHNFHNFT 168
++++ + Y Y P +P D P + L++ + G H+F +FT
Sbjct: 102 ARHDVERKIYRYRLRIVPQKQVRSPLDNPFTGVFFAPVDLSLLKSSSLLFLGNHDFTHFT 161
Query: 169 SKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFT 228
K K L P R I E +DG + + I G+ F+ IR ++G + +A G
Sbjct: 162 VK-KSLPPKTQRTIDHIFWE----RDGADY-QVWITGKGFLHMMIRFIIGTIVEVANGKR 215
Query: 229 SKDLIEKTFGLDQFDLPM-------APGLGLLLEQVHY 259
+ + +EK L Q D P+ AP GL L +V Y
Sbjct: 216 TLEELEK---LLQSDSPVPVKCLRPAPPEGLSLIRVLY 250
>gi|255710543|ref|XP_002551555.1| KLTH0A02222p [Lachancea thermotolerans]
gi|238932932|emb|CAR21113.1| KLTH0A02222p [Lachancea thermotolerans CBS 6340]
Length = 443
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 104/253 (41%), Gaps = 49/253 (19%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A FAY G Y GL I + T+EG I+EA+ V PQ+
Sbjct: 89 VAFKFAYLGWNYNGLA-------IQKEPTPLPTVEGTILEAMNACKLVPS---MVPQDYN 138
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKE----------------AINEHLPEQIRILSI 104
F R RTDKGVSA+ Q++SL + +E +N+ LP+ IRI ++
Sbjct: 139 FSRCGRTDKGVSAMNQVISLHVRSNLTREEQQDEENDGREIDYIHILNQLLPDDIRISAV 198
Query: 105 K-RVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHN 163
R F+++ +C R Y Y F ++ + YEG H+
Sbjct: 199 CLRPPTNFDARFSCQYRHYRYL---------------FHKDGLDIKKMEEAARMYEGEHD 243
Query: 164 FHNFTSKRKPLDPS--CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAM 221
F NF LD S + Y + + + ++ L + G +F+ HQ+R M+
Sbjct: 244 FRNFCK----LDGSKQINNYKRNIE-RSRIISLSEDIYCLDLIGSAFLWHQVRCMMANLF 298
Query: 222 AIARGFTSKDLIE 234
I +G L++
Sbjct: 299 LIGQGLEDTTLLK 311
>gi|239825725|ref|YP_002948349.1| tRNA pseudouridine synthase A [Geobacillus sp. WCH70]
gi|259550397|sp|C5D3U9.1|TRUA_GEOSW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|239806018|gb|ACS23083.1| tRNA pseudouridine synthase A [Geobacillus sp. WCH70]
Length = 248
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 112/272 (41%), Gaps = 49/272 (18%)
Query: 5 FAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRA 64
+Y G +FG Q + G +T++G++ L + + + I+ +
Sbjct: 9 LSYDGTHFFGYQIQ----------PGKRTVQGELERVL--------EQMHKGKAIRVTAS 50
Query: 65 ARTDKGVSALKQIVS----LKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNAR 120
RTD GV A Q++ L L + K+A+N LP+ I I ++ F+++ + A+
Sbjct: 51 GRTDAGVHAYGQVIHFDTFLSLSPDQWKKALNAQLPDDIVIKDVQEADPSFHARFSAKAK 110
Query: 121 TYSYTC----------PTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSK 170
Y Y Y + P P ++ L+ EGTH+F +F S
Sbjct: 111 EYRYKVRIAQERDVFLRNYCYHYP---------YPLDMEAMRHALRLIEGTHDFTSFCSA 161
Query: 171 RKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSK 230
+ +D R + + D LE + G F+ + +R +VG + + +G S
Sbjct: 162 KTDVD---DRVRTIYKADMAMHDDLLEFCFI---GNGFLYNMVRIIVGTILEVGQGKRSI 215
Query: 231 DLIEKTFGLD--QFDLPMAPGLGLLLEQVHYD 260
D I F QF AP GL L +V+YD
Sbjct: 216 DSISHAFEAKDRQFAGKTAPPQGLYLWKVYYD 247
>gi|312866252|ref|ZP_07726471.1| tRNA pseudouridine synthase A [Streptococcus downei F0415]
gi|311098225|gb|EFQ56450.1| tRNA pseudouridine synthase A [Streptococcus downei F0415]
Length = 248
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 100/222 (45%), Gaps = 17/222 (7%)
Query: 49 TEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSI 104
T + N+ ++ A RTD GV A Q++ LP+ ++E ++ PE I ++S+
Sbjct: 34 TLERLNSGNPVKVHGAGRTDSGVHAYGQVIHFDLPQTRDEEKLRFGLDTQSPEDIDVVSV 93
Query: 105 KRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLT----PDQFNFLQALLKQYEG 160
++V + F+++ N +++TY + T P++ T P +Q + G
Sbjct: 94 EQVPEVFHARYNPHSKTYEFLVDT---GRPKNPMMRAYATHFPYPVDLGAMQEAIADLLG 150
Query: 161 THNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVA 220
TH+F FT+ ++ R I E+ K G + T G F+ Q+R MVG
Sbjct: 151 THDFTGFTASGTSVENKV-RTISQAKVERD-PKTGFLVFTF--SGNGFLYKQVRNMVGTL 206
Query: 221 MAIARGFTSKDLIEKTFGLDQFDL--PMAPGLGLLLEQVHYD 260
+ I G I+ +L P A G GL L+++ YD
Sbjct: 207 LKIGNGRMPVSQIKTILAAKDRNLAGPTAAGNGLYLKEITYD 248
>gi|290984657|ref|XP_002675043.1| predicted protein [Naegleria gruberi]
gi|284088637|gb|EFC42299.1| predicted protein [Naegleria gruberi]
Length = 430
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 107/253 (42%), Gaps = 41/253 (16%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G Y GL SK L TIE + EAL + + N +
Sbjct: 70 IALKIAYLGFNYQGL-SKQL--------HTPNTIEHHLFEALKTLKLIEHED-----NCE 115
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK----EAINEHLPEQIRILSIKRVTKGFNSKNN 116
F + RTDKGVSAL Q+VS K IN LP+ IR+L+ V+K F+++
Sbjct: 116 FTKCGRTDKGVSALGQVVSFNCRYNPKKNDYVRLINSLLPDDIRVLAWCPVSKDFDARFG 175
Query: 117 CNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDP 176
C RTY Y + Q+ ++ + G H+F NF + +
Sbjct: 176 CLQRTYKY------YFIRQNL---------NIEKMKQAAAHFVGEHDFRNFCKINEEV-T 219
Query: 177 SCSRYIMSFDC-------EQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTS 229
+ R I+S + +Q + E+ + + G SF+ HQ+R M + I G
Sbjct: 220 NFRRRILSMEIIKSDLLHQQHGNDEYFEIYEIVVCGTSFLWHQVRCMTAILFLIGEGKEE 279
Query: 230 KDLIEKTFGLDQF 242
+I + ++++
Sbjct: 280 PSVIPELLDIEKY 292
>gi|145354770|ref|XP_001421649.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581887|gb|ABO99942.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 556
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 28/188 (14%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTP--QN 58
+A++ AY G GY G + T++ + +ALF G + ++ + Q
Sbjct: 91 VAIVLAYVGQGYKGNTHN-------AQAPRGTTVDDVVEDALFAWGGILMPNYRSRGLQR 143
Query: 59 IQFQRAARTDKGVSALKQIVSLKL---PEEANKEA--------INEHLPEQIRILSIKRV 107
+++ R++RTDKGVS+L +VSL+ PE K+ I +HLPE + ++
Sbjct: 144 LKWSRSSRTDKGVSSLCTVVSLRAEIDPEVWTKDVEARETAREITKHLPEDVECFAVYNT 203
Query: 108 TKGFNSKNNCNARTYSYTCPTYAFATPQ---DTKDDFRLTPDQFNFLQALLKQYEGTHNF 164
K F ++ C RTY Y P + D D RL L + G H F
Sbjct: 204 PKSFQARRECIMRTYEYLLPARVLDLERGVLDASDAERL-----ELFSKALAAFVGAHPF 258
Query: 165 HNFTSKRK 172
HN+T +++
Sbjct: 259 HNYTKRKQ 266
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 198 LITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMAPGLGLLLEQ 256
I + ++G+SFML+QIRKM+ A+A++ G + + + + +P+AP L L
Sbjct: 388 FIRVSVRGESFMLYQIRKMIASAVAVSLGHCPLEFLPASLSRPCRAAMPLAPASTLYLYD 447
Query: 257 VHY 259
V +
Sbjct: 448 VEF 450
>gi|46579324|ref|YP_010132.1| tRNA pseudouridine synthase A [Desulfovibrio vulgaris str.
Hildenborough]
gi|387152707|ref|YP_005701643.1| tRNA pseudouridine synthase A [Desulfovibrio vulgaris RCH1]
gi|51316681|sp|Q72DL8.1|TRUA_DESVH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|46448738|gb|AAS95391.1| tRNA pseudouridine synthase A [Desulfovibrio vulgaris str.
Hildenborough]
gi|311233151|gb|ADP86005.1| tRNA pseudouridine synthase A [Desulfovibrio vulgaris RCH1]
Length = 297
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 103/253 (40%), Gaps = 42/253 (16%)
Query: 57 QNIQFQRAARTDKGVSALKQIVSLKLPEEA----NKEAINEHLPEQIRILSIKRVTKGFN 112
+ ++ A RTD GV A Q+ + +P+ ++AIN LP+ I IL ++R F+
Sbjct: 46 EQVRLHAAGRTDAGVHADGQVAHVDIPDHKLGVDWQKAINAQLPDDICILDVRRAADDFH 105
Query: 113 SKNNCNARTYSYTCP-TYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTS-- 169
++ + + Y+Y T F P+ + P + + GTH+F F +
Sbjct: 106 ARFDALGKRYTYRLWLTRRFIPPKLHGQVWATGPLDVYAMDRAARHLAGTHDFAAFQNQG 165
Query: 170 -------------KRKPLDP-------SCSRYIMSFDCE------------QPFVKDGLE 197
+R P +CS S+ C P GLE
Sbjct: 166 TDVTSTVRTVHAIRRCPSGTLPAGALLTCSEPYTSWRCTGTHPDQPPATAGHPLAGIGLE 225
Query: 198 LITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFG-LDQFDLP-MAPGLGLLLE 255
L+ +G F+ +R M+G+ +A+ RG + D + LD+ P AP GL L
Sbjct: 226 LV-WSFEGDGFLKQMVRNMMGLLVAVGRGALAADDVPGIMATLDRSRAPATAPACGLTLS 284
Query: 256 QVHYDLYNQKYGQ 268
+V+Y + Y +
Sbjct: 285 EVYYPPCDYPYAR 297
>gi|70952835|ref|XP_745558.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56525920|emb|CAH80907.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 507
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 69/125 (55%), Gaps = 6/125 (4%)
Query: 143 LTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLK 202
LT D+ N L + Y G HNFH FT + +D + RYI FD + D I+++
Sbjct: 349 LTDDELNNLFEIFSNYRGYHNFHCFT--KNNIDTTTFRYIKYFDVSTVKLYDH-NFISIR 405
Query: 203 IKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMA--PGLGLLLEQVHYD 260
I GQSF++HQIRKM+ +A+ R T K+ I + + +P+ P GL+L +++
Sbjct: 406 ILGQSFLMHQIRKMITLAVETFRNATPKNSIYYSLNTKSY-IPILLFPPDGLMLVCPYFN 464
Query: 261 LYNQK 265
YN+K
Sbjct: 465 SYNEK 469
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 91 INEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQ 135
+N +LP I+ I +VTK F+++ C+ R Y Y PTY + Q
Sbjct: 209 LNSNLPNDIKCFDIYKVTKSFDARKFCSFRLYEYLFPTYVLSPVQ 253
>gi|423071227|ref|ZP_17060002.1| tRNA pseudouridine synthase A [Streptococcus intermedius F0413]
gi|355364589|gb|EHG12321.1| tRNA pseudouridine synthase A [Streptococcus intermedius F0413]
Length = 276
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 110/252 (43%), Gaps = 31/252 (12%)
Query: 22 FLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLK 81
F F R ++++ +I + L K N + + A RTD GV AL Q++
Sbjct: 42 FAGFQRQPHERSVQEEIEKTLIK--------INNGEQVVIHGAGRTDSGVHALGQVIHFD 93
Query: 82 LPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDT 137
LP++ ++E A++ PE I +S++ V F+S+ +++TY + P++
Sbjct: 94 LPQKRDEEKLRFALDTQTPEDIDFISVEEVDDKFHSRYRKHSKTYEFIVD---IGRPKNP 150
Query: 138 KDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLD---PSCSRYIMSFDCEQP 190
T P ++ + + EGTH+F FT+ ++ + +R + FD +
Sbjct: 151 MMRHYATHYPYPFDLKLMEKAIVKLEGTHDFTGFTASGTSVENKVRTITRARLEFDENRN 210
Query: 191 FVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDL--PMAP 248
F + G F+ QIR MVG + I G + I++ L P A
Sbjct: 211 F-------LIFTFSGNGFLYKQIRNMVGTLLKIGNGRMPVEQIDRILIEQDRHLAGPTAA 263
Query: 249 GLGLLLEQVHYD 260
GL L+++ Y+
Sbjct: 264 PNGLYLKEIRYE 275
>gi|428671151|gb|EKX72069.1| tRNA pseudouridine synthase A, putative [Babesia equi]
Length = 264
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 96/234 (41%), Gaps = 66/234 (28%)
Query: 33 TIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVS--------LKLPE 84
T+EG + +AL K + + + +++RAARTDKGV AL S L LP+
Sbjct: 35 TVEGRLFDALDKVNMLKD-----LVSSRYERAARTDKGVHALHNYCSFFVDPGFVLSLPD 89
Query: 85 EANK------------------------------EAINEHLPEQIRILSIKRVTKGFNSK 114
++ IN+HLP+ IR+ SI V F+++
Sbjct: 90 HLHRFYEFLKPSLVKFETDEERNLFRQTRISGMTRPINKHLPKYIRVNSIAIVPPNFSAR 149
Query: 115 NNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNF--TSKRK 172
+C R Y Y + P++ ++ + + G HNF F T KR
Sbjct: 150 GDCTYRIYKY------YFQPENM---------DIYLMREACQYFVGHHNFTQFCKTDKRN 194
Query: 173 PLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARG 226
P DP+ + Y + + + IKG SF+ HQ+R M+ V + +G
Sbjct: 195 PKDPNKTIYFFGIEKYNDLLHAAV------IKGSSFLWHQVRCMMAVLFLVGKG 242
>gi|148693449|gb|EDL25396.1| pseudouridine synthase 3, isoform CRA_b [Mus musculus]
Length = 322
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 111/274 (40%), Gaps = 64/274 (23%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K V + Q
Sbjct: 72 VALKIAYLGWGYQGFASQ---------ENTSNTIEEKLFEALTKTRLV-----ESRQTSN 117
Query: 61 FQRAARTDKGVSALKQIVSLKL---------PEEAN--------------KEAINEHLPE 97
+ R RTDKGVSA Q++SL L E++N +N LP
Sbjct: 118 YHRCGRTDKGVSAFGQVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPA 177
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IR+L+ V F+++ +C RTY Y P + D + + ++
Sbjct: 178 DIRVLAWAPVEPSFSARFSCLERTYRYFFP----------RADLDIAT-----MNYAAQK 222
Query: 158 YEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV----------KDGLELITLKIKGQS 207
Y GTH+F N + + + + C Q + ++ +L ++ GQ+
Sbjct: 223 YVGTHDFRNLC--KMDVANGVINFQRTILCAQVQLVAQSPGEERRQEPFQLCQFEVIGQA 280
Query: 208 FMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQ 241
F+ HQ+R M+ + I +G ++I++ + +
Sbjct: 281 FLYHQVRCMMAILFLIGQGMEKPEIIDELLNIQK 314
>gi|269122416|ref|YP_003310593.1| tRNA pseudouridine synthase A [Sebaldella termitidis ATCC 33386]
gi|268616294|gb|ACZ10662.1| tRNA pseudouridine synthase A [Sebaldella termitidis ATCC 33386]
Length = 244
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 125/274 (45%), Gaps = 48/274 (17%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ +++ Y G + G Q R KT++G I E V ++ FN + +
Sbjct: 4 IKIVYEYDGSKFSGFQ----------RQLNKKTVQGSIEE-------VIKNYFN--EEVN 44
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKEAI----NEHLPEQIRILSIKRVTKGFNSKNN 116
+ RTDKGV AL Q+ + + + + + I N L +IR+ K F+++ +
Sbjct: 45 LLSSGRTDKGVHALGQVSNFFMEKSISPDIIKGILNRALSGKIRVTDAKEADSDFHARFS 104
Query: 117 CNARTYSYTCPTYAFATPQDTKD----DFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRK 172
RTY Y TP ++ D ++ P++ LQ +++ + G HNF +F K K
Sbjct: 105 AKTRTYLYIMKLKDEITPFESSYVSALDGKIIPEK---LQKIMEPFIGRHNFDSFRKKDK 161
Query: 173 PLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDL 232
+ + R I + C + + + ++I+G+SF+ IR M+G A+A+ + D
Sbjct: 162 D-NKNPEREINNIRCYEEDKR-----LFIEIEGKSFLKTMIRIMIGSALAVYFEKRNPDY 215
Query: 233 IEKTFGLDQFDLP-------MAPGLGLLLEQVHY 259
I D+ D P +AP GL L +V+Y
Sbjct: 216 I-----CDKLDNPDSDGEKILAPSEGLYLYKVNY 244
>gi|440493351|gb|ELQ75836.1| Pseudouridylate synthase, partial [Trachipleistophora hominis]
Length = 212
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 101/237 (42%), Gaps = 35/237 (14%)
Query: 101 ILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEG 160
+ I +V K FN KN + RTY Y P + A T L ++L Y G
Sbjct: 1 VYDIIKVPKSFNPKNRTDHRTYHYLLPQH-IARLDSTA------------LSSILALYTG 47
Query: 161 THNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVG-V 219
T N+HNFT + S R+I + E+ +G +KI GQSFM+HQIRKM+G V
Sbjct: 48 TRNYHNFTQQSNTRGKS--RHITNIRVER--AHNGW--YEIKITGQSFMMHQIRKMIGFV 101
Query: 220 AMAIARG-----FTSKDLIEKTFGL----DQFDLPMAPGLGLLLEQVHYDLYNQKYGQDG 270
+ I G + + I FG ++P AP L L+ + YN +Y
Sbjct: 102 LLVINWGGEDGAVPAMERIRALFGCAFSERVLNVPKAPAHALFLDAPVFAGYNGRYEN-- 159
Query: 271 MHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSFETRAAKAAL 327
H L E +K R + I ++ TE + W E + H +E K L
Sbjct: 160 -HRDLVVDEAEKAA--VRERMIYKEIM-TERCIRMFREWQECVEAHMYEYGYLKEVL 212
>gi|392958512|ref|ZP_10324021.1| tRNA pseudouridine synthase A [Bacillus macauensis ZFHKF-1]
gi|391875413|gb|EIT84024.1| tRNA pseudouridine synthase A [Bacillus macauensis ZFHKF-1]
Length = 245
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 17/210 (8%)
Query: 59 IQFQRAARTDKGVSALKQIV----SLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSK 114
++ + RTD GV A+ Q++ +L L EA K+A+N LP I I ++RV F+++
Sbjct: 44 VRIAASGRTDAGVHAIGQVIHWDSALTLASEAWKKALNAMLPHDIHIEKVERVNDDFHAR 103
Query: 115 NNCNARTYSYTCPTYAFATPQDTKDDFRL---TPDQFNFLQALLKQYEGTHNFHNFTSKR 171
+TY Y + + P F P ++ +++ GTH+F +F+S R
Sbjct: 104 YGAVKKTYHYHL--HIGSEPNVFNRHFAYHFPYPLALAPMREAMERLCGTHDFTSFSSAR 161
Query: 172 KPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKD 231
++ R I S++ ++ G ELI K+ G F+ + +R M G + + +G S
Sbjct: 162 STVEDKV-RTIYSYEVQE----RGQELI-FKVTGSGFLYNMVRIMTGTLLDVGQGRISPA 215
Query: 232 LIEKTFGLDQFDLP--MAPGLGLLLEQVHY 259
I++ + AP GL L +V Y
Sbjct: 216 AIDEMLLAKNREAAGKTAPAHGLYLYEVQY 245
>gi|373486059|ref|ZP_09576737.1| tRNA-pseudouridine synthase I [Holophaga foetida DSM 6591]
gi|372012497|gb|EHP13067.1| tRNA-pseudouridine synthase I [Holophaga foetida DSM 6591]
Length = 282
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 106/248 (42%), Gaps = 40/248 (16%)
Query: 29 QGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLPEEANK 88
QG++T+ G + L + G + + + RTD GV A Q+ L L A +
Sbjct: 42 QGVRTVAGTLERVLHQGGL---------RVLNLTGSGRTDGGVHAAGQVAHLHLAAPAPR 92
Query: 89 EA-----INEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCP--TYAFATPQDTKDDF 141
A +E LP I I I F+++++ RTY Y AFA P +
Sbjct: 93 PAELRRIFDEGLPADIAIREIVPCPASFHARHDATFRTYVYQIALRRSAFAKPYVW---W 149
Query: 142 RLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDP--SCSRYIMSFDCEQPFVKDGLELI 199
P + LQ +EG H+F + L+P S ++ S C ++G +LI
Sbjct: 150 VKAPLSLDKLQQAWSSFEGVHDFSAYAD----LEPGESPKGHVRSCQC----AREG-DLI 200
Query: 200 TLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQ--------FDLPMAPGLG 251
L+I F+ Q+R+MVG A+ A G + + + L+Q + AP G
Sbjct: 201 LLRITAGHFLRRQVRRMVGAAVQCALGREKLEQLRQD--LEQPGPEATLYWSEKAAPSSG 258
Query: 252 LLLEQVHY 259
L LE+V Y
Sbjct: 259 LFLERVGY 266
>gi|421243519|ref|ZP_15700033.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2081074]
gi|395606739|gb|EJG66841.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2081074]
Length = 249
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 106/249 (42%), Gaps = 25/249 (10%)
Query: 22 FLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLK 81
F F R ++++ +I + L + N Q I A RTD GV AL Q++
Sbjct: 15 FAGFQRQPHSRSVQEEIEKTLTR--------LNKGQAITVHGAGRTDSGVHALGQVIHFD 66
Query: 82 LPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDT 137
LP + ++E A++ PE I ++SI+ V F+ + +++TY +T P++
Sbjct: 67 LPYQMDEEKLRFALDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFTVDR---GRPKNP 123
Query: 138 KDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVK 193
T P +Q +K+ EGTH+F FT+ S + + V
Sbjct: 124 MRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTAS----GTSVEDKVRTITEASLIVD 179
Query: 194 DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD--QFDLPMAPGLG 251
+ + +T G F+ QIR MVG + I + I+ Q P A G
Sbjct: 180 ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPNG 239
Query: 252 LLLEQVHYD 260
L L+++ Y+
Sbjct: 240 LYLKEIRYE 248
>gi|12847644|dbj|BAB27651.1| unnamed protein product [Mus musculus]
Length = 316
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 111/274 (40%), Gaps = 64/274 (23%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ TIE + EAL K V + Q
Sbjct: 66 VALKIAYLGWGYQGFASQ---------ENTSNTIEEKLFEALTKTRLV-----ESRQTSN 111
Query: 61 FQRAARTDKGVSALKQIVSLKL---------PEEAN--------------KEAINEHLPE 97
+ R RTDKGVSA Q++SL L E++N +N LP
Sbjct: 112 YHRCGRTDKGVSAFGQVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPA 171
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IR+L+ V F+++ +C RTY Y P + D + + ++
Sbjct: 172 DIRVLAWAPVEPSFSARFSCLERTYRYFFP----------RADLDIAT-----MNYAAQK 216
Query: 158 YEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV----------KDGLELITLKIKGQS 207
Y GTH+F N + + + + C Q + ++ +L ++ GQ+
Sbjct: 217 YVGTHDFRNLC--KMDVANGVINFQRTILCAQVQLVAQSPGEERRQEPFQLCQFEVIGQA 274
Query: 208 FMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQ 241
F+ HQ+R M+ + I +G ++I++ + +
Sbjct: 275 FLYHQVRCMMAILFLIGQGMEKPEIIDELLNIQK 308
>gi|410989912|ref|XP_004001197.1| PREDICTED: tRNA pseudouridine synthase-like 1 [Felis catus]
Length = 307
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 120/275 (43%), Gaps = 31/275 (11%)
Query: 15 LQSKYLFFLIFCRNQ--GMKTIEGDIMEALFKAGFVTEDS--FNTPQNIQFQRAARTDKG 70
++++YL + + + G+ I G A+ ++ E + N+ ++F ++RTD G
Sbjct: 8 VRARYLVYFQYLGTEFNGVAAIRGS-QRAIGVQNYLEEAAKRLNSVVPVKFTISSRTDAG 66
Query: 71 VSALKQIVSLKLPEEANK---------EAINEHLPE-QIRILSIKRVTKGFNSKNNCNAR 120
V AL L + + + EA+N HL IR+L RV F++++ +R
Sbjct: 67 VHALSNAAHLDVQRRSGQPPFSPEVLAEALNAHLRHPAIRVLQAFRVPIDFHARHAATSR 126
Query: 121 TYSYTCPTYAFATPQDTKDD------FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
TY Y T Q + + R +Q + GTH+F F S P+
Sbjct: 127 TYLYRLATGCHRPDQLSVFERNRCWALRAGCLDVEAMQEAAQHLLGTHDFSAFQSAGSPV 186
Query: 175 DPSCS---RYIMSFDCEQPFV---KDGLELITLKIKGQSFMLHQIRKMVGVAMAIARG-- 226
S R +S D PFV ++ L+ L+ + QSF+ Q+R+M V +A+ G
Sbjct: 187 VSSVRTLRRASVSPDLGSPFVLPQENRLQFWNLEFESQSFLYRQVRRMTAVLVAVGLGAL 246
Query: 227 --FTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHY 259
K ++E L + +AP GL L+ V Y
Sbjct: 247 MPAQVKVILESRDPLGRHQTRVAPAHGLFLKSVQY 281
>gi|225011098|ref|ZP_03701561.1| tRNA pseudouridine synthase A [Flavobacteria bacterium MS024-3C]
gi|225004732|gb|EEG42691.1| tRNA pseudouridine synthase A [Flavobacteria bacterium MS024-3C]
Length = 268
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 125/276 (45%), Gaps = 46/276 (16%)
Query: 6 AYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAA 65
+Y G Y G Q + G+KTIE + + + FV ++ ++ + A
Sbjct: 13 SYLGFRYSGWQ----------KQPGVKTIESMLTKTI---SFVLGET----RSFKILGAG 55
Query: 66 RTDKGVSALKQIVSLKLPEEANK------EAINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
RTD VS++ L + E K + N +LP IR+ SI V + FN ++
Sbjct: 56 RTDAKVSSIHGAFELFIEHEPLKNLDALMDLFNLNLPADIRVESITAVEEKFNIIHSAKE 115
Query: 120 RTYSYT----CPTYAFATP--QDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKP 173
+TY Y + F P + +D +T +Q K +EGTH+F NFT+++
Sbjct: 116 KTYCYLFSFGSKAHPFCAPIMANYPEDLNIT-----LMQEAAKLFEGTHDFKNFTARKDK 170
Query: 174 LDPSCSRYIMSFDCEQP-------FVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARG 226
+ R I S + ++ F +D L+++G+ F+ +QIR M+G + + R
Sbjct: 171 KNSQTIRTIASCELKKNKAISASFFPEDSY---VLEVRGKGFLRYQIRLMMGALICLGRN 227
Query: 227 FTSKDLIEKTFG--LDQFDLPMAPGLGLLLEQVHYD 260
+ I++ LD F +A G GL L+++ +D
Sbjct: 228 EIDLEGIKRLLNSDLDDFIPYVAAGSGLHLKELLFD 263
>gi|317495541|ref|ZP_07953909.1| tRNA pseudouridine synthase A [Gemella morbillorum M424]
gi|316914355|gb|EFV35833.1| tRNA pseudouridine synthase A [Gemella morbillorum M424]
Length = 265
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 118/278 (42%), Gaps = 51/278 (18%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ ++ Y G GY G Q + T++ +I +AL K ++I+
Sbjct: 3 VVLLCRYDGSGYHGFQIQ----------PNNNTVQEEIEKALKKI---------NKKDIR 43
Query: 61 FQRAARTDKGVSALKQIV----SLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ RTD GV A Q++ L +P EA K+A+N +LP IRI + + F+ + N
Sbjct: 44 VYMSGRTDSGVHAYGQVLHFDTELNIPNEAWKKALNANLPADIRIFGVTTSNEDFHVRYN 103
Query: 117 CNARTYSYTCPTYAFATPQDTKDDFRLT-----PDQFNF--LQALLKQYEGTHNFHNFTS 169
+TY Y Q+ D F L FNF Q L + G H+F +F S
Sbjct: 104 STRKTYHYK-----LYIGQNV-DPFLLNYVGQHKYNFNFEKAQKALNYFIGEHDFSSFCS 157
Query: 170 KRKPLDPSCSR---YIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARG 226
K ++ + M +D P +I + G F+ + +R ++G +A G
Sbjct: 158 KNSSVEDKIREIYYFNMYYDKTNP------RVINFDVCGNGFLYNMVRIIIGTIQDVAAG 211
Query: 227 FTSKDLIEKTFGLD----QFDLPMAPGLGLLLEQVHYD 260
+ +++ LD ++ P A GL L++V Y+
Sbjct: 212 KYGAEYVKEI--LDKKERKYAGPKADAAGLYLKEVIYN 247
>gi|448315519|ref|ZP_21505167.1| tRNA pseudouridine synthase A [Natronococcus jeotgali DSM 18795]
gi|445611692|gb|ELY65439.1| tRNA pseudouridine synthase A [Natronococcus jeotgali DSM 18795]
Length = 289
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 110/268 (41%), Gaps = 34/268 (12%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G GY G Q + + T+E D+ +AL G V E + P +
Sbjct: 5 AYRIAYDGSGYRGFQRQP--------QPDVPTVEDDLFDALRSHG-VLEPGADKPTG--Y 53
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSAL Q V+ + P+ A N LP +R ++ F++ ++ + R
Sbjct: 54 AAAGRTDAGVSALAQTVAFEAPDWLAPRAFNGELPADVRAWAVADAPADFHATHHASRRE 113
Query: 122 YSY------TCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
Y+Y + A A ++ R+ D+F +A G+H+FHN T + +
Sbjct: 114 YAYHLYAPPARRSAASAAETGSRTATRVADDRF---RAACDALSGSHDFHNLTPDDRNTE 170
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
S + D + + + + F +R++V +A A+ G S +E+
Sbjct: 171 RSPTLEATRDD----------DYLVVTVTADGFARELVRRLVSLARAVGAGERSLADLER 220
Query: 236 TFGLDQF----DLPMAPGLGLLLEQVHY 259
+ + AP L+L V Y
Sbjct: 221 ALAPEPLPGREGIAPAPPEPLVLAGVDY 248
>gi|385300994|gb|EIF45229.1| putative trna pseudouridine synthase [Dekkera bruxellensis
AWRI1499]
Length = 443
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/316 (24%), Positives = 130/316 (41%), Gaps = 51/316 (16%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ F+Y G Y GL + L T+E I++AL + V + P +
Sbjct: 87 IALKFSYLGWDYQGLALQGL-------PTDRPTVEEVIIKALQQVRLVQSAN---PADFL 136
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKE----------------AINEHLPEQIRILSI 104
F R RTD+GVSA+ Q++SL++ KE +N LP IR +I
Sbjct: 137 FSRCGRTDRGVSAMNQVISLRVRSRLTKEQLKDPANDNLELDYIKMLNHVLPADIRFHAI 196
Query: 105 -KRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHN 163
R KGF+++ +C R Y Y F + ++ + + G H+
Sbjct: 197 CVRPPKGFDARFSCQWRQYKYI---------------FNSKGLDIDRMRKAAQMFVGQHD 241
Query: 164 FHNF--TSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAM 221
F NF K L + +R + S E + G + L KG +F+ HQ+R MV V +
Sbjct: 242 FRNFCKVDGSKQLK-NFTREVYSTAIESLEQEPGFSVFDL--KGSAFLWHQVRYMVAVLL 298
Query: 222 AIARGFTSKDLIEKTFGLDQFDL----PMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHF 277
I + +++ ++ + +A + L+L YD K+ + +
Sbjct: 299 TIGQKLEEPTIVKDLLNINMYPCRPAYKLAHDIPLILYDCGYDPQTVKWTAGPSRKYVSQ 358
Query: 278 HEVDKEVNEFRHKFIL 293
+D N ++ K I+
Sbjct: 359 LALDGLTNNYKVKSIV 374
>gi|329767334|ref|ZP_08258859.1| tRNA pseudouridine synthase A [Gemella haemolysans M341]
gi|328836023|gb|EGF85714.1| tRNA pseudouridine synthase A [Gemella haemolysans M341]
Length = 265
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 119/274 (43%), Gaps = 43/274 (15%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ Y G Y G Q + TI+ +I ++L K ++++
Sbjct: 3 IALLCRYDGSNYHGFQIQ----------PNNNTIQEEIEKSLKKI---------NKKDVR 43
Query: 61 FQRAARTDKGVSALKQIV----SLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ RTD GV A Q++ L +P+ A +A+N +P+ IRI+ V++ F+ + N
Sbjct: 44 LYMSGRTDSGVHAYGQVLHFDTDLNIPDVAWVKALNATIPKDIRIVGATTVSEDFHVRYN 103
Query: 117 CNARTYSYTC----PTYAFATPQDTKDDFRLTPDQFNF--LQALLKQYEGTHNFHNFTSK 170
+TY Y F K F FNF Q LK + G H+F +F SK
Sbjct: 104 STQKTYYYKLYIGREIDPFLLNYVGKHSF-----DFNFEKAQESLKYFIGEHDFSSFCSK 158
Query: 171 RKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSK 230
++ R I S + + ++ +I G F+ + +R ++G +A G
Sbjct: 159 NSSVEDKV-RTIYSLTMGKDPINPN--IVNFEITGNGFLYNMVRIIIGTIQNVAAGKYEA 215
Query: 231 DLIEKTFGLD----QFDLPMAPGLGLLLEQVHYD 260
D I++ LD QF P A GL L++V YD
Sbjct: 216 DYIKEI--LDKKERQFAGPKADAAGLYLKEVVYD 247
>gi|268324810|emb|CBH38398.1| tRNA pseudouridine synthase A [uncultured archaeon]
Length = 275
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 119/292 (40%), Gaps = 51/292 (17%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ Y G Y G Q + ++T+EG++ +AL + G + ED +
Sbjct: 8 VALKIGYLGTNYHGFQIQ--------PQAELQTVEGELFKALKRLG-ILEDR----KTAN 54
Query: 61 FQRAARTDKGVSALKQIVSL-KLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
+ A RTDKGV AL Q+VS L + IN LP I L+I + GFN++
Sbjct: 55 YSYAGRTDKGVHALAQVVSFDTLNQNMTPRMINTMLPNDIWALAIAKPHAGFNARKEAIR 114
Query: 120 RTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCS 179
R Y Y F Q T+ D D L G H+F NF+ + S
Sbjct: 115 REYRY------FLFLQ-TELDISRMRDASELLI-------GAHDFSNFSQRDGLEGKSLI 160
Query: 180 RYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGL 239
+ I + VK L I + I F+ +R++V + G +K I+
Sbjct: 161 KEIKQVNI----VKSDL-FIIIDIAASGFLRKMVREIVSALSMVGSGKRAKSWIQ----- 210
Query: 240 DQFDLPM------APGLGLLLEQVHY-------DLYNQKYGQDGMHESLHFH 278
D DL + AP GL+L+ V Y D Y ++ + + L FH
Sbjct: 211 DLLDLKIKEQIEPAPAFGLVLKDVSYHELEFVVDEYAKRRITARLKKDLFFH 262
>gi|82595787|ref|XP_725993.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23481212|gb|EAA17558.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 1510
Score = 73.6 bits (179), Expect = 2e-10, Method: Composition-based stats.
Identities = 53/161 (32%), Positives = 88/161 (54%), Gaps = 7/161 (4%)
Query: 133 TPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV 192
T ++ K+D LT D+ N L + Y G HNFH FT + +D + RYI FD +
Sbjct: 1344 TIKEEKND--LTDDELNSLFEIFSNYRGYHNFHCFT--KNNIDTTTYRYIKYFDISTVKL 1399
Query: 193 KDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQF-DLPMAPGLG 251
D I+++I GQSF++HQIRKM+ + + I R TSK+ I + + + + P G
Sbjct: 1400 YDH-NFISIRILGQSFLMHQIRKMITLTVEIFRNATSKNSIYYSLNTKNYIPILLFPPDG 1458
Query: 252 LLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFI 292
L+L +++ YN+K + F+E ++E+ +F+ + I
Sbjct: 1459 LMLICPYFNSYNEKVCNPPDTPQICFNE-NEEILKFKSEQI 1498
Score = 40.4 bits (93), Expect = 1.5, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 91 INEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQ 135
+N +LP I+ I +VTK F+++ C+ R Y Y PTY + Q
Sbjct: 1222 LNSNLPSDIKCFDIYKVTKSFDARKFCSFRLYEYLFPTYVLSPVQ 1266
>gi|341581737|ref|YP_004762229.1| tRNA pseudouridine synthase A [Thermococcus sp. 4557]
gi|340809395|gb|AEK72552.1| tRNA pseudouridine synthase A [Thermococcus sp. 4557]
Length = 267
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 114/262 (43%), Gaps = 42/262 (16%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A+ AY G ++G Q R ++T+EG+++ AL K G + + ++ F
Sbjct: 4 ALRIAYDGTAFYGFQ----------RQPDVRTVEGELIRALSKLGIIRD-----AESSNF 48
Query: 62 QRAARTDKGVSALKQIVSLKL---PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ A+RTD+GVSA+ +V+ + P+ E +N HL + +L + V F+ +
Sbjct: 49 KGASRTDRGVSAIFNVVAFDVASRPDLVRAEVLNHHL-RDLWVLGVAEVPDDFHPRFQAR 107
Query: 119 ARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSC 178
++TY Y F + +D ++ + G H+F F+ DP
Sbjct: 108 SKTYRYYLVDEGF----NERD-----------MRECAALFVGEHDFSAFSRLEPGRDP-- 150
Query: 179 SRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTF- 237
R ++ D + + G +I +I+G+SF+ R++V G +E
Sbjct: 151 IRELLRVDVIR---RQGYYII--EIEGKSFLWEMARRIVNAVRLCGLGLMESREVEGMLE 205
Query: 238 GLDQFDLPMAPGLGLLLEQVHY 259
G +P AP GL+L + Y
Sbjct: 206 GEYNKKVPPAPPEGLILWHMEY 227
>gi|392429225|ref|YP_006470236.1| tRNA pseudouridine synthase A [Streptococcus intermedius JTH08]
gi|391758371|dbj|BAM23988.1| tRNA pseudouridine synthase A [Streptococcus intermedius JTH08]
Length = 259
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 111/252 (44%), Gaps = 31/252 (12%)
Query: 22 FLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLK 81
F F R ++++ +I + L K N + + A RTD GV AL+Q++
Sbjct: 25 FAGFQRQPHERSVQEEIEKTLIK--------INGGKQVVIHGAGRTDSGVHALEQVIHFD 76
Query: 82 LPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDT 137
LP++ ++E A++ PE I +S++ V F+S+ +++TY + P++
Sbjct: 77 LPQKRDEEKLRFALDTQTPEDIDFISVEEVDDKFHSRYWKHSKTYEFIVD---IGRPKNP 133
Query: 138 KDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLD---PSCSRYIMSFDCEQP 190
T P ++ + + EGTH+F FT+ ++ + +R + FD +
Sbjct: 134 MMRHYATHYPYPLDLKLMEKAIVKLEGTHDFTGFTASGTSVENKVRTITRARLEFDENRN 193
Query: 191 FVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDL--PMAP 248
F + G F+ QIR MVG + I G + I++ L P A
Sbjct: 194 F-------LIFTFSGNGFLYKQIRNMVGTLLKIGNGRMPVEQIDRILIEQDRHLAGPTAA 246
Query: 249 GLGLLLEQVHYD 260
GL L+++ Y+
Sbjct: 247 PNGLYLKEIRYE 258
>gi|303275814|ref|XP_003057201.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461553|gb|EEH58846.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 281
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 115/289 (39%), Gaps = 55/289 (19%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMK----TIEGDIMEALFKAGFVTEDSFNTP 56
+A+ AY+G Y G S+ N + TIEG + AL + + +D+ T
Sbjct: 18 IALHVAYAGWDYHGFASQ--------GNDAAEARSPTIEGALFAALKRTRLIADDA--TW 67
Query: 57 QNIQFQRAARTDKGVSALKQIVSLKLPEEANK-------------------EAINEHLPE 97
++ + R RTD GVSA+ Q+VSL+ + +N LP+
Sbjct: 68 TDVDYTRCGRTDAGVSAMGQLVSLRARSRGTRYTPPSPPPPAKDADELDYPSILNRALPD 127
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IR+ V + F+++ +C R Y Y F T D D D ++
Sbjct: 128 DIRVTGWCYVDEAFSARFDCEWRHYKY------FFTLHDGGLDLEKMRDA-------ARR 174
Query: 158 YEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMV 217
EG H+F NF + +R I+ L + +KG +F+ HQ+R +
Sbjct: 175 LEGEHDFRNFCKMDVKNVHNHARRILESA-SSSASGAPPRLCYISVKGTAFLWHQVRCVA 233
Query: 218 GVAMAIARGFTSKDLI------EKTFGLDQFDLPMAPGLGLLLEQVHYD 260
V + G +I EKT Q++ MAP LLL +D
Sbjct: 234 AVLFLVGLGKEPPSVIDDLLDLEKTTRKPQYE--MAPEEPLLLWASGFD 280
>gi|441671685|ref|XP_003279774.2| PREDICTED: LOW QUALITY PROTEIN: tRNA pseudouridine synthase-like 1,
partial [Nomascus leucogenys]
Length = 280
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 105/241 (43%), Gaps = 38/241 (15%)
Query: 51 DSFNTPQNIQFQRAARTDKGVSALKQIVSLKL---------PEEANKEAINEHLPE-QIR 100
+ N+ + ++F ++RTD GV AL L + P E EA+N HL IR
Sbjct: 27 ERLNSVEPVRFTISSRTDAGVHALSNAAHLDVQRRSGRPPFPPEVLTEALNTHLRHPAIR 86
Query: 101 ILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDD---------FRLTPDQFNF- 150
+L RV F++++ +RTY Y AT + +D+ + L D +
Sbjct: 87 VLRAFRVPNDFHARHAATSRTY-----LYRLATGCNRRDELPVFERNLCWALPADCLDVV 141
Query: 151 -LQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE----QPFVKD---GLELITLK 202
+Q + GTH+F F S P+ PS R + P V L +L+
Sbjct: 142 AMQEAAQHLLGTHDFSAFQSTGSPV-PSPVRTLRRVSVSPGQASPLVTQESRKLRFWSLE 200
Query: 203 IKGQSFMLHQIRKMVGVAMAIARGFTS----KDLIEKTFGLDQFDLPMAPGLGLLLEQVH 258
+ QSF+ Q+R+M V +A+ G + K ++E L + +AP GL L+ V
Sbjct: 201 FESQSFLYRQVRRMTAVLVAVGLGALAPAQVKTILESQDPLGKHQTRVAPAHGLFLKSVL 260
Query: 259 Y 259
Y
Sbjct: 261 Y 261
>gi|421227783|ref|ZP_15684485.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2072047]
gi|395594067|gb|EJG54307.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2072047]
Length = 249
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 17/218 (7%)
Query: 53 FNTPQNIQFQRAARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVT 108
N Q I A RTD GV AL Q++ LP + ++E A++ PE I ++SI+ V
Sbjct: 38 LNKGQAITVHGAGRTDSGVHALGQVIHFDLPYQMDEEKLRFALDTQSPEDIDVISIELVA 97
Query: 109 KGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLT----PDQFNFLQALLKQYEGTHNF 164
F+ + +++TY +T P++ T P +Q +K+ EGTH+F
Sbjct: 98 DDFHCRYAKHSKTYEFTVDR---GRPKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDF 154
Query: 165 HNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIA 224
FT+ S + + V + + +T G F+ QIR MVG + I
Sbjct: 155 TGFTAS----GTSVEDKVRTITEASLIVDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIG 210
Query: 225 RGFTSKDLIEKTFGLD--QFDLPMAPGLGLLLEQVHYD 260
+ I+ Q P A GL L+++ Y+
Sbjct: 211 NNRMPVEQIDLILEKKDRQLAGPTAAPNGLYLKEIRYE 248
>gi|410671117|ref|YP_006923488.1| tRNA pseudouridine synthase A [Methanolobus psychrophilus R15]
gi|409170245|gb|AFV24120.1| tRNA pseudouridine synthase A [Methanolobus psychrophilus R15]
Length = 273
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 124/298 (41%), Gaps = 53/298 (17%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G G+ G Q + + TIEG+I AL + + + P++
Sbjct: 3 VALKIAYVGTGFHGSQIQ----------PNVATIEGEIFRALTELEIIQD-----PRSAN 47
Query: 61 FQRAARTDKGVSALKQIVSLKLPEE--ANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F A RTD GV A + +++ + A IN LP I + + + F+ +
Sbjct: 48 FTSAGRTDAGVHARELVIAFDTDKIHLAIPRVINSKLPTAIWAWAHAEIPEDFDPRRAAI 107
Query: 119 ARTYSYTCPTYAFATPQDTKDDFRLTPDQFNF--LQALLKQYEGTHNFHNFTSKRKPLDP 176
AR Y Y ++ +Q++ +++ + GTH+F NF +K +
Sbjct: 108 ARKYRYI-----------------MSGEQYDISRIRSASRILAGTHDFSNFCTKEG--EK 148
Query: 177 SCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKT 236
S R I D ++ L + I+ SF+ + +RK+V + G + +++
Sbjct: 149 STVRTIEKVD-----IRVSGTLTKIDIQANSFLWNMVRKIVTALTMVGSGARDEAWLQQM 203
Query: 237 FGLDQFD--LPMAPGLGLLLEQVHY--------DLYNQKYGQDGMHESLHFHEVDKEV 284
+ ++ L AP GL L ++ Y D Y+ + + HE + H V EV
Sbjct: 204 LEPEIYEEGLESAPAYGLTLMEIIYPQPIEWCEDAYSIRKANENFHEYMIRHRVMAEV 261
>gi|395841018|ref|XP_003793346.1| PREDICTED: tRNA pseudouridine synthase-like 1 [Otolemur garnettii]
Length = 302
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 100/236 (42%), Gaps = 27/236 (11%)
Query: 51 DSFNTPQNIQFQRAARTDKGVSALKQIVSLKL---------PEEANKEAINEHLPE-QIR 100
+ N+ ++F ++RTD GV AL L + P E +A+N HL IR
Sbjct: 49 ERLNSVVPVKFTISSRTDAGVHALCNTAHLDIQRRSGRPPFPPEVLAQALNTHLKHPAIR 108
Query: 101 ILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQ----DTKDDFRLTPDQFNF--LQAL 154
+L RV F+++ +RTY Y T + Q + + L PD + ++
Sbjct: 109 VLQAFRVPSDFHARYAATSRTYLYRLATGCLQSEQLPVFERSLCWALRPDYLDVDAMREA 168
Query: 155 LKQYEGTHNFHNFTSKRKPLDPSCS---RYIMSFDCEQPFV----KDGLELITLKIKGQS 207
+ GTH+F F S P S R +S P+V L L+ + QS
Sbjct: 169 AQHLLGTHDFSAFQSAGSPATSSVRTLHRVSVSLGPASPYVLPQESRRLRFWNLEFESQS 228
Query: 208 FMLHQIRKMVGVAMAIARGFT----SKDLIEKTFGLDQFDLPMAPGLGLLLEQVHY 259
F+ Q+R+M V +A+ G K ++E L + +AP GL L+ V Y
Sbjct: 229 FLYRQVRRMTAVLVAVGLGVLLPAQVKMILESRDPLGKHQAHVAPAHGLFLKSVLY 284
>gi|367007832|ref|XP_003688645.1| hypothetical protein TPHA_0P00530 [Tetrapisispora phaffii CBS 4417]
gi|357526955|emb|CCE66211.1| hypothetical protein TPHA_0P00530 [Tetrapisispora phaffii CBS 4417]
Length = 422
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 113/255 (44%), Gaps = 51/255 (20%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ FAY G Y GL I + T+EG I++A+ K + S N P + +
Sbjct: 66 IALKFAYLGWNYNGLA-------IQKEPTALPTVEGVIVDAMNKCKLIP--SIN-PSDFK 115
Query: 61 FQRAARTDKGVSALKQIVSLKL-----PE-EANKE----------AINEHLPEQIRILSI 104
F R RTDKGVSA+ Q++SL + PE + N E +N+ LP+ IRI ++
Sbjct: 116 FSRCGRTDKGVSAMNQVISLNVRSNLTPEQQMNSEFDSKEIQYINILNQLLPDDIRISAV 175
Query: 105 K-RVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHN 163
R GF+++ +C R Y Y KD ++ ++ ++G H+
Sbjct: 176 CLRPPTGFDARFSCQYRHYKYLF----------KKDGLNISA-----METAASYFKGEHD 220
Query: 164 FHNFTSKRKPLDPSCSRYIMSFD---CEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVA 220
F NF LD S+ I +F ++ E + G +F+ HQ+R M +
Sbjct: 221 FRNFCK----LDG--SKQITNFKRTMMSSQILQVNEEFYCFDLIGSAFLWHQVRCMTAIL 274
Query: 221 MAIARGFTSKDLIEK 235
+ + +++ +
Sbjct: 275 FLVGQNLEVPEIVSQ 289
>gi|300173999|ref|YP_003773165.1| tRNA pseudouridine synthase A [Leuconostoc gasicomitatum LMG 18811]
gi|299888378|emb|CBL92346.1| tRNA pseudouridine synthase A [Leuconostoc gasicomitatum LMG 18811]
Length = 255
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 122/272 (44%), Gaps = 38/272 (13%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRN--QGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
+ +Y G +FG Q + +N + +T++G++ +A V + + N I+
Sbjct: 7 IVSYDGSDFFGFQVQ-------TKNGVERQRTVQGELNKA------VNQMAKNPTPAIKV 53
Query: 62 QRAARTDKGVSALKQIVSLKLPEEAN----KEAINEHLPEQIRILSIKRVTKGFNSKNNC 117
A+RTD GV A Q+V LP + N ++ +N LP+ I I S+ +V F+++ N
Sbjct: 54 VGASRTDTGVHAFGQVVHFDLPFDINVIGVRKGLNTLLPKDIIIQSVDQVANDFHARFNT 113
Query: 118 NARTYSYTCPTYAFATPQDTKDDF-RLTPDQFNF------LQALLKQYEGTHNFHNFTSK 170
+A+ Y Y T QD D F R F + ++ L G H+F +F +
Sbjct: 114 HAKRYVYRVST------QDFTDPFKRFYTGHFQWQLDVERIKIALPDLLGEHDFASFAAS 167
Query: 171 RKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSK 230
+ + + + D EL+ +G +F+ +QIR MVGV + I G
Sbjct: 168 G---NQTITTIRTITRADLKVNNDEQELV-FTFEGNAFLYNQIRIMVGVLLEIGNGRRDV 223
Query: 231 DLIEKTFGLDQFDLP--MAPGLGLLLEQVHYD 260
I + + + AP GL L++++YD
Sbjct: 224 HDIIRLIAVKDREQARFTAPASGLYLDEIYYD 255
>gi|237752928|ref|ZP_04583408.1| tRNA pseudouridine synthase A [Helicobacter winghamensis ATCC
BAA-430]
gi|229375195|gb|EEO25286.1| tRNA pseudouridine synthase A [Helicobacter winghamensis ATCC
BAA-430]
Length = 249
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 122/269 (45%), Gaps = 39/269 (14%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+AM AY+G +FG QS+ ++++ +++E +FK+ V +
Sbjct: 12 VAMRIAYNGGAFFGFQSQ----------SNVQSV-ANVLEDVFKSVGVFS---------K 51
Query: 61 FQRAARTDKGVSALKQIVSLKLPE-----EANKEAINEHLPEQIRILSIKRVTKGFNSKN 115
+ RTDKGV + Q++SL++P E K +N L + I I V F+++
Sbjct: 52 IAASGRTDKGVHSSAQVISLEIPYFWKNLENLKVCLNAKLAPNLFIKHIWEVGDDFHARF 111
Query: 116 NCNARTYSYTCPTY--AFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKP 173
+ R Y Y + F TP + + P N ++ LK GTHNF F K+
Sbjct: 112 SATRRGYCYVLSKHFSPFLTPFSLHYNLK-NP---NLIKQALKLLVGTHNFGAF-KKQGS 166
Query: 174 LDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLI 233
+ S R I D +++ L G F+ Q+R MVG + I +G + + +
Sbjct: 167 GEKSSVRSIFRAD-----LREFKGFWILSFWGNGFLRSQVRLMVGFLLEIDKGNLTLEAL 221
Query: 234 EKTF-GLDQFDLPMAPGLGLLLEQVHYDL 261
E G ++ +P+AP GL L +V ++L
Sbjct: 222 EAQLNGEMRYRIPIAPN-GLYLSRVDFNL 249
>gi|261403437|ref|YP_003247661.1| tRNA pseudouridine synthase A [Methanocaldococcus vulcanius M7]
gi|261370430|gb|ACX73179.1| tRNA pseudouridine synthase A [Methanocaldococcus vulcanius M7]
Length = 259
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 87/201 (43%), Gaps = 28/201 (13%)
Query: 64 AARTDKGVSALKQIVSLKLPEEANKEAINEHLP-EQIRILSIKRVTKGFNSKNNCNARTY 122
RTDKGVSAL + ++L +E + IN L E I +L + + K R Y
Sbjct: 46 GGRTDKGVSALGNFIVVELKKEPSPSYINAKLKNEGIWVLGYREIEK----IPEVRYRHY 101
Query: 123 SYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYI 182
Y P + + LT GTH+FHN + K + D S R I
Sbjct: 102 RYILPNMGYDVEAIKRGASILT---------------GTHSFHNLSKKDRTKDRSPIRTI 146
Query: 183 MSFDC-EQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQ 241
D E F ITL I G+SF+ + +RKMVG + RG + IEK D
Sbjct: 147 FKIDVSENEF------YITLDIFGKSFLWNMVRKMVGALDLVGRGERPVNWIEKLLREDH 200
Query: 242 FD-LPMAPGLGLLLEQVHYDL 261
+ +P P GL+L + + D+
Sbjct: 201 KEGVPTFPPDGLILVEANVDV 221
>gi|148986314|ref|ZP_01819186.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP3-BS71]
gi|387757834|ref|YP_006064813.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae OXC141]
gi|418232599|ref|ZP_12859185.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA07228]
gi|418237055|ref|ZP_12863621.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA19690]
gi|419480445|ref|ZP_14020250.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA19101]
gi|419500146|ref|ZP_14039840.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47597]
gi|147921782|gb|EDK72913.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP3-BS71]
gi|301800423|emb|CBW33056.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae OXC141]
gi|353885912|gb|EHE65696.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA07228]
gi|353891493|gb|EHE71247.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA19690]
gi|379570399|gb|EHZ35363.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA19101]
gi|379599454|gb|EHZ64237.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47597]
gi|429316458|emb|CCP36159.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SPN034156]
gi|429319801|emb|CCP33111.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SPN034183]
gi|429321617|emb|CCP35085.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SPN994039]
gi|429323438|emb|CCP31126.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SPN994038]
Length = 249
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 106/249 (42%), Gaps = 25/249 (10%)
Query: 22 FLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLK 81
F F R ++++ +I + L + N Q I A RTD GV AL Q++
Sbjct: 15 FAGFQRQPHARSVQEEIEKTLTR--------LNKGQVITVHGAGRTDSGVHALGQVIHFD 66
Query: 82 LPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDT 137
LP + ++E A++ PE I ++SI+ V F+ + +++TY +T P++
Sbjct: 67 LPYQMDEEKLRFALDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFTVDR---GRPKNP 123
Query: 138 KDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVK 193
T P +Q +K+ EGTH+F FT+ S + + V
Sbjct: 124 MRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTAS----GTSVEDKVRTITEASLIVD 179
Query: 194 DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD--QFDLPMAPGLG 251
+ + +T G F+ QIR MVG + I + I+ Q P A G
Sbjct: 180 ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPNG 239
Query: 252 LLLEQVHYD 260
L L+++ Y+
Sbjct: 240 LYLKEIRYE 248
>gi|320548017|ref|ZP_08042298.1| tRNA pseudouridine synthase A [Streptococcus equinus ATCC 9812]
gi|320447363|gb|EFW88125.1| tRNA pseudouridine synthase A [Streptococcus equinus ATCC 9812]
Length = 249
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 95/225 (42%), Gaps = 23/225 (10%)
Query: 49 TEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSI 104
T N+ ++ A RTD GV A Q+V LP+ + E ++ PE I ++ +
Sbjct: 34 TLQKLNSGTPVKVHGAGRTDSGVHAYGQVVHFDLPQARDVEKLRFGLDTQSPEDIDVVKV 93
Query: 105 KRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLT----PDQFNFLQALLKQYEG 160
+ V+ F+S+ N +++TY + P++ T P +Q +K G
Sbjct: 94 ELVSDDFHSRYNKHSKTYEFLVDA---GRPKNPMMRHYATHYPYPLDLALMQEAIKDLVG 150
Query: 161 THNFHNFTSKRKPLDP---SCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMV 217
TH+F FT+ ++ + +R + D + F G F+ Q+R MV
Sbjct: 151 THDFTGFTASGTSVENKVRTITRATVDIDEKTGF-------FVFTFSGNGFLYKQVRNMV 203
Query: 218 GVAMAIARGFTSKDLIEKTFGLDQFDL--PMAPGLGLLLEQVHYD 260
G + I G I+ DL P A G GL L+++ YD
Sbjct: 204 GTLLKIGNGRMPVSQIKTVLESKNRDLAGPTAAGNGLYLKEIIYD 248
>gi|355571506|ref|ZP_09042758.1| tRNA pseudouridine synthase A [Methanolinea tarda NOBI-1]
gi|354825894|gb|EHF10116.1| tRNA pseudouridine synthase A [Methanolinea tarda NOBI-1]
Length = 289
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 102/237 (43%), Gaps = 36/237 (15%)
Query: 28 NQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQI--VSLKLPEE 85
G +T+EG+ + A + F P+ +FQ A RTD+GV A Q+ +S P+
Sbjct: 32 QSGARTVEGEFIAACLRLSL-----FPDPRAGRFQAAGRTDRGVHARGQVFCISTPFPDR 86
Query: 86 ANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTP 145
A + HLP + + + RV GF+ ++ RTY Y + D + P
Sbjct: 87 AIN-LLRYHLPADLWVTGVARVAPGFHPRHGAIHRTYRYFF----------GERDLDVQP 135
Query: 146 DQFNFLQALLKQYEGTHNFHNFTSK--RKPLDPSCSRYIMSFDCEQPFVKDGLELITLKI 203
+ + +EGT +F F R P+ R ++S + F + G ++ ++
Sbjct: 136 -----MDRAARAFEGTFDFSLFARPDGRDPV-----RTVLS---ARVFEESG--IVVFEV 180
Query: 204 KGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMAPGLGLLLEQVHY 259
+ +SF+ H +R M + G + L+ D + L AP GL+L V Y
Sbjct: 181 RAESFLWHMVRYMASALRLVGTGEADEKLVSSRLSGDPRGRLSPAPPGGLVLWDVSY 237
>gi|319945640|ref|ZP_08019892.1| tRNA pseudouridine synthase A [Streptococcus australis ATCC 700641]
gi|417919104|ref|ZP_12562645.1| tRNA pseudouridine synthase A [Streptococcus australis ATCC 700641]
gi|319748239|gb|EFW00481.1| tRNA pseudouridine synthase A [Streptococcus australis ATCC 700641]
gi|342834691|gb|EGU68955.1| tRNA pseudouridine synthase A [Streptococcus australis ATCC 700641]
Length = 248
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 109/251 (43%), Gaps = 27/251 (10%)
Query: 21 FFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSL 80
F F R ++++ +I + L + N + A RTD GV AL Q++
Sbjct: 14 LFAGFQRQPHARSVQEEIEKTLMR--------LNQGNPVTIHGAGRTDAGVHALGQVIHF 65
Query: 81 KLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQD 136
LP+ ++E A++ PE I + +++V F+S+ +++TY + + P++
Sbjct: 66 DLPQPRDEEKLRFALDTQTPEDIDFIRVEQVPDDFHSRYQKHSKTYEFIV---DYGRPKN 122
Query: 137 TKDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV 192
T P +QA +++ EGTH+F FT+ ++ R I E V
Sbjct: 123 PMMRHYATHYPYPLDVAKMQAAIQKLEGTHDFTGFTASGTSVEDKV-RTI----TEARLV 177
Query: 193 KDG-LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDL--PMAPG 249
+D + G F+ QIR MVG + I G D I+ +L P A
Sbjct: 178 EDAEHHRLVFTFSGNGFLYKQIRNMVGTLLKIGNGRMPVDQIDLILEKKDRNLAGPTAAP 237
Query: 250 LGLLLEQVHYD 260
GL L+++ Y+
Sbjct: 238 NGLYLKEIRYE 248
>gi|379724643|ref|YP_005316774.1| tRNA pseudouridine synthase A [Paenibacillus mucilaginosus 3016]
gi|378573315|gb|AFC33625.1| tRNA pseudouridine synthase A [Paenibacillus mucilaginosus 3016]
Length = 258
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 118/276 (42%), Gaps = 31/276 (11%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+AM +Y G Y G Q++ + T++ ++ +A+ F T + ++
Sbjct: 4 IAMKVSYDGTAYHGFQTQ----------PELVTVQDELEQAIL---------FLTGEKVK 44
Query: 61 FQRAARTDKGVSALKQIVSL----KLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ RTD GV A Q+++L ++P + A+N LP+ I + + V F+++ +
Sbjct: 45 LTSSGRTDAGVHAKGQVINLQTEARIPVDRWCHAMNSRLPDDIVVWHAEEVPAEFHARRS 104
Query: 117 CNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNF--LQALLKQYEGTHNFHNFTSKRKPL 174
+TY YT F P + +F P + + ++ L G H+F ++ S R
Sbjct: 105 AKRKTYRYTIRCGRFMDPFKRRFEFH-HPGKLDVESMRMGLLHLIGEHDFTSYCSTRTA- 162
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKI--KGQSFMLHQIRKMVGVAMAIARGFTSKDL 232
S R I E V L+ + I G F+ + +R +VG M + G S +
Sbjct: 163 SVSHVRTIYDAYIECEPVDQELQSYAMHIFVTGNGFLYNMVRIIVGTLMEVGEGKRSSNA 222
Query: 233 IEKTFGLDQFDL--PMAPGLGLLLEQVHYDLYNQKY 266
I + P A GL+L +V YD +KY
Sbjct: 223 IGEILAARNRSKAGPTAMAHGLMLWEVFYDKEAKKY 258
>gi|337751700|ref|YP_004645862.1| tRNA pseudouridine synthase A [Paenibacillus mucilaginosus KNP414]
gi|336302889|gb|AEI45992.1| tRNA pseudouridine synthase A [Paenibacillus mucilaginosus KNP414]
Length = 258
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 118/276 (42%), Gaps = 31/276 (11%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+AM +Y G Y G Q++ + T++ ++ +A+ F T + ++
Sbjct: 4 IAMKVSYDGTAYHGFQTQ----------PELVTVQDELEQAIL---------FLTGEKVK 44
Query: 61 FQRAARTDKGVSALKQIVSL----KLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ RTD GV A Q+++L ++P + A+N LP+ I + + V F+++ +
Sbjct: 45 LTSSGRTDAGVHAKGQVINLQTEARIPVDRWCHAMNSRLPDDIVVWHAEEVPAEFHARRS 104
Query: 117 CNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNF--LQALLKQYEGTHNFHNFTSKRKPL 174
+TY YT F P + +F P + + ++ L G H+F ++ S R
Sbjct: 105 AKRKTYRYTIRCGRFMDPFKRRFEFH-HPGKLDVESMRKGLLHLIGEHDFTSYCSTRTA- 162
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKI--KGQSFMLHQIRKMVGVAMAIARGFTSKDL 232
S R I E V L+ + I G F+ + +R +VG M + G S +
Sbjct: 163 SVSHVRTIYDAYIECEPVDQELQSYAMHIFVTGNGFLYNMVRIIVGTLMEVGEGKRSSNA 222
Query: 233 IEKTFGLDQFDL--PMAPGLGLLLEQVHYDLYNQKY 266
I + P A GL+L +V YD +KY
Sbjct: 223 IGEILAARNRSKAGPTAMAHGLMLWEVFYDKEAKKY 258
>gi|386727392|ref|YP_006193718.1| tRNA pseudouridine synthase A [Paenibacillus mucilaginosus K02]
gi|384094517|gb|AFH65953.1| tRNA pseudouridine synthase A [Paenibacillus mucilaginosus K02]
Length = 258
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 119/275 (43%), Gaps = 29/275 (10%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+AM +Y G Y G Q++ + T++ ++ +A+ F T + ++
Sbjct: 4 IAMKVSYDGTAYHGFQTQ----------PELVTVQDELEQAIL---------FLTGEKVK 44
Query: 61 FQRAARTDKGVSALKQIVSL----KLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ RTD GV A Q+++L ++P + A+N LP+ I + + V F+++ +
Sbjct: 45 LTSSGRTDAGVHAKGQVINLQTEARIPVDRWCHAMNSRLPDDIVVWHAEEVPAEFHARRS 104
Query: 117 CNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNF--LQALLKQYEGTHNFHNFTSKR-KP 173
+TY YT F P + +F P + + ++ L G H+F ++ S R
Sbjct: 105 AKRKTYRYTIRCGRFMDPFKRRFEFH-HPGKLDVESMRMGLLHLIGEHDFTSYCSTRTAS 163
Query: 174 LDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLI 233
+ + Y +CE + + + + G F+ + +R +VG M + G S + I
Sbjct: 164 VSHVRTIYDAYIECEPVDQELQSYAMHIYVTGNGFLYNMVRIIVGTLMEVGEGKRSSNAI 223
Query: 234 EKTFGLDQFDL--PMAPGLGLLLEQVHYDLYNQKY 266
+ P A GL+L +V YD +KY
Sbjct: 224 GEILAARNRSKAGPTAMAHGLMLWEVFYDKEAKKY 258
>gi|426240431|ref|XP_004014106.1| PREDICTED: tRNA pseudouridine synthase-like 1, partial [Ovis aries]
Length = 271
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 117/270 (43%), Gaps = 30/270 (11%)
Query: 25 FCRNQGMKTIEGDIMEALFKAGFVTE--DSFNTPQNIQFQRAARTDKGVSALKQIVSLKL 82
F G+ + G + A+ ++ E + N+ ++F ++RTD GV AL L +
Sbjct: 3 FPARSGVAAVRG-VQRAVGVQNYLEEAAERLNSVVPVKFTVSSRTDAGVHALSNAAHLDI 61
Query: 83 PEEAN---------KEAINEHLPE-QIRILSIKRVTKGFNSKNNCNARTYSYT----CPT 128
++ EA+N HL IR+L RV F++++ +RTY Y CP
Sbjct: 62 QRRSDLPPFSPEVLTEALNTHLKHPAIRVLQAFRVPSHFHARHAAISRTYLYRLATGCPR 121
Query: 129 YAFATPQDTKDDFRLTPDQFNF--LQALLKQYEGTHNFHNFTSKRKPLDP---SCSRYIM 183
+ + L D + +Q + GTH+F F S P + R +
Sbjct: 122 PDRVPVFERNRCWALQADCLDVAAMQEAAQHLLGTHDFSAFQSAGSPASSPVRTLRRASV 181
Query: 184 SFDCEQPFV----KDGLELITLKIKGQSFMLHQIRKMVGVAMAIARG----FTSKDLIEK 235
S D PFV L+ +L+ + QSF+ Q+R+M V +A+ G K ++E
Sbjct: 182 SPDPASPFVLPEESRRLQFWSLEFESQSFLYKQVRRMTAVLVAVGLGALMPAQVKAILES 241
Query: 236 TFGLDQFDLPMAPGLGLLLEQVHYDLYNQK 265
L + +AP GL L+ V Y+ +++
Sbjct: 242 QDPLGKHQSRVAPAHGLFLKSVLYEGLDER 271
>gi|419781142|ref|ZP_14306974.1| tRNA pseudouridine(38-40) synthase [Streptococcus oralis SK100]
gi|383184534|gb|EIC77048.1| tRNA pseudouridine(38-40) synthase [Streptococcus oralis SK100]
Length = 249
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 112/267 (41%), Gaps = 35/267 (13%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G G+ G Q R ++++ +I + L + N Q I
Sbjct: 7 IISYDGYGFAGFQ----------RQPHARSVQEEIEKTLTR--------LNKGQAITVHG 48
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV AL Q++ LP + ++E A++ PE I ++SI+ V F+ + ++
Sbjct: 49 AGRTDSGVHALGQVIHFDLPYQMDEEKLRFALDTQSPEDIDVISIEIVADDFHCRYAKHS 108
Query: 120 RTYSYTCPTYAFATPQDTKDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+TY + P++ T P +Q +K+ EGTH+F FT+ ++
Sbjct: 109 KTYEFIVDR---GRPKNPMRRHYATHFPYPLDVERMQMAIKKLEGTHDFTGFTASGTSVE 165
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
R I V + + +T G F+ QIR MVG + I + I+
Sbjct: 166 DKV-RTITEASLS---VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDL 221
Query: 236 TFGLD--QFDLPMAPGLGLLLEQVHYD 260
Q P A GL L+++ Y+
Sbjct: 222 ILEKKDRQLAGPTAAPNGLYLKEIRYE 248
>gi|68490066|ref|XP_711154.1| likely tRNA pseudouridine synthase [Candida albicans SC5314]
gi|68490103|ref|XP_711136.1| likely tRNA pseudouridine synthase [Candida albicans SC5314]
gi|46432414|gb|EAK91897.1| likely tRNA pseudouridine synthase [Candida albicans SC5314]
gi|46432433|gb|EAK91915.1| likely tRNA pseudouridine synthase [Candida albicans SC5314]
Length = 489
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 111/268 (41%), Gaps = 54/268 (20%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A FAY G Y GL + + T+E ++AL K + E + ++
Sbjct: 132 VAFKFAYLGWNYNGLALQ-------LEPTPLPTVEEVFLKALAKVKLIKE----PIEEVK 180
Query: 61 FQRAARTDKGVSALKQIVSLK------LPEEANKE----------AINEHLPEQIRILSI 104
F R RTDKGVSA+ Q++S+ L ++N E +N +LP I++ SI
Sbjct: 181 FSRCGRTDKGVSAMNQVISINVRSNITLENQSNPEFDDLEIDYISVLNANLPSDIKVHSI 240
Query: 105 -KRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHN 163
R F+++ +C +R Y Y FR + K Y+G H+
Sbjct: 241 CLRPPPDFDARFSCLSRHYRYI---------------FRKQDLDIELMNQGAKLYQGIHD 285
Query: 164 FHNFTSKRKPLDPSCSRYIMSFDCE---QPFVKDGLELITLKIKGQSFMLHQIRKMVGVA 220
F NF LD S+ I +F E + + +KG +F+ HQ+R MV +
Sbjct: 286 FRNFCK----LDG--SKQITNFVREIYQSQIIHLHQDYYCFDLKGSAFLWHQVRCMVAIL 339
Query: 221 MAIARGFTSKDLIEKTFGLDQFDLPMAP 248
I + S +I ++F P P
Sbjct: 340 FTIGQSLESPSIITDLMDTNKF--PTKP 365
>gi|348551560|ref|XP_003461598.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Cavia
porcellus]
Length = 476
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/299 (25%), Positives = 125/299 (41%), Gaps = 54/299 (18%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQ--GMKTIEGDIMEALFKAGFVTE--DSFNTP 56
M + A +G G +YL + + G + G A+ ++ E + N+
Sbjct: 172 MGPLLAAAGEGLV----RYLVYFQYVGTNFNGAAAVRG-AQRAVGVQNYLEEAAEQLNSV 226
Query: 57 QNIQFQRAARTDKGVSALKQIVSLKLPEEANK---------EAINEHLPEQ-IRILSIKR 106
+ I+F ++RTD GV AL + + + +A+N HL IR+L R
Sbjct: 227 KPIRFTLSSRTDAGVHALSNAAHVDIQRSQGRPPFSPEILAQALNTHLRHPAIRVLQAFR 286
Query: 107 VTKGFNSKNNCNARTYSY------TC----PTY----AFATPQDTKDDFRLTPDQFNFLQ 152
V F+++ +RTY Y TC P + +A P D D +Q
Sbjct: 287 VPSDFHARYAATSRTYLYRLVTGCTCQNHLPVFERNLCWALPADCLD--------VAAMQ 338
Query: 153 ALLKQYEGTHNFHNFTSKRKPLDPSCSRYI----MSFDCEQPFV----KDGLELITLKIK 204
+ GTH+F F S P PS R + +S PFV L+ TL+ +
Sbjct: 339 EAAQHLLGTHDFSAFQSAGSP-TPSSVRTLRHISVSPGLASPFVLSQESRRLQFWTLEFE 397
Query: 205 GQSFMLHQIRKMVGVAMAIA----RGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHY 259
QSF+ Q+R+M V +A+ + K+++E L ++ +AP GL L+ V Y
Sbjct: 398 SQSFLYRQVRRMTAVLVAVGLRALKPVHVKEILESRDPLGKYQARVAPARGLFLKSVIY 456
>gi|116617361|ref|YP_817732.1| tRNA pseudouridine synthase A [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|339481338|ref|ZP_08656997.1| tRNA pseudouridine synthase A [Leuconostoc pseudomesenteroides KCTC
3652]
gi|122272438|sp|Q03ZL3.1|TRUA_LEUMM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|116096208|gb|ABJ61359.1| Pseudouridylate synthase [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
Length = 255
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 119/267 (44%), Gaps = 28/267 (10%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRN--QGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
+ AY G +FG Q + +N + ++T++G++ + + K + N I+
Sbjct: 7 VIAYDGAEFFGFQLQ-------TKNGVESVRTVQGELNKVINKM------AKNPSPQIKV 53
Query: 62 QRAARTDKGVSALKQIVSLKLP----EEANKEAINEHLPEQIRILSIKRVTKGFNSKNNC 117
A+RTD GV A Q+V LP E ++ +N LP + + ++ V+ F+++ N
Sbjct: 54 VGASRTDTGVHAFGQVVHFDLPFNIDPEGVRKGMNTLLPFDVVVNHVEHVSDDFHARFNT 113
Query: 118 NARTYSYTCPTYAFATPQDTK--DDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+++ Y Y T + P K F D N ++A L G H+F +F +
Sbjct: 114 HSKRYIYRVSTTDYKDPFKRKYTGHFHWKLD-INRIKAALPDLLGEHDFASFAASGNET- 171
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
+ R I D ++ K I +G +F+ +QIR MVGV + I G I +
Sbjct: 172 ATTIRLITRADVDE---KPEEHEIVFTFEGNAFLYNQIRIMVGVLLEIGTGKRPVHDIVR 228
Query: 236 TFGLDQFDLP--MAPGLGLLLEQVHYD 260
+ + AP GL L+++ Y+
Sbjct: 229 LIEVKDREQARYTAPASGLYLDEIDYN 255
>gi|419442952|ref|ZP_13982979.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA13224]
gi|379551652|gb|EHZ16746.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA13224]
Length = 249
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 105/249 (42%), Gaps = 25/249 (10%)
Query: 22 FLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLK 81
F F R ++++ +I + L + N Q I A RTD GV AL Q++
Sbjct: 15 FAGFQRQPHARSVQEEIEKTLTR--------LNKGQAITVHGAGRTDSGVHALGQVIHFD 66
Query: 82 LPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDT 137
LP + ++E A++ PE I ++SI+ V F+ + +++TY +T P++
Sbjct: 67 LPYQMDEEKLRFALDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFTVDR---GRPKNP 123
Query: 138 KDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVK 193
T P +Q +K+ EGTH+F FT+ S + + V
Sbjct: 124 MRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTAS----GTSVEDKVRTITEASLIVD 179
Query: 194 DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD--QFDLPMAPGLG 251
+ + +T G F+ QIR MVG + I + I Q P A G
Sbjct: 180 ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIALILEKKDRQLAGPTAAPNG 239
Query: 252 LLLEQVHYD 260
L L+++ Y+
Sbjct: 240 LYLKEIRYE 248
>gi|335029188|ref|ZP_08522700.1| tRNA pseudouridine synthase A [Streptococcus infantis SK1076]
gi|334269589|gb|EGL88006.1| tRNA pseudouridine synthase A [Streptococcus infantis SK1076]
Length = 249
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 112/267 (41%), Gaps = 35/267 (13%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G + G Q R ++++ +I + L K N Q I
Sbjct: 7 IISYDGYAFAGFQ----------RQPHARSVQEEIEKTLAK--------LNKGQAITIHG 48
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV AL Q++ LP + ++E A++ PE I ++SI+ V F+ + ++
Sbjct: 49 AGRTDSGVHALGQVIHFDLPYQMDEEKLRFALDTQSPEDIDVISIEIVADDFHCRYAKHS 108
Query: 120 RTYSYTC----PTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+TY + P T + L ++ +Q +K+ EGTH+F FT+
Sbjct: 109 KTYEFIVDRGRPKNPMRRHYATHYPYSLDVER---MQLAVKKLEGTHDFTGFTAS----G 161
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
S + + V + + +T G F+ QIR MVG + I S + I+
Sbjct: 162 TSVENKVRTITEASLRVDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMSIEQIDL 221
Query: 236 TFGLD--QFDLPMAPGLGLLLEQVHYD 260
Q P A GL L+++ Y+
Sbjct: 222 ILEKKDRQLAGPTAAPNGLYLKEIRYE 248
>gi|241895121|ref|ZP_04782417.1| pseudouridylate synthase [Weissella paramesenteroides ATCC 33313]
gi|241871617|gb|EER75368.1| pseudouridylate synthase [Weissella paramesenteroides ATCC 33313]
Length = 249
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 121/269 (44%), Gaps = 43/269 (15%)
Query: 6 AYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAA 65
AY G +FG Q + +T++ + ME + V + + N ++I+ Q +
Sbjct: 9 AYDGTDFFGWQVQ----------PNKRTVQAE-MELV-----VNKMAKNPAEHIRVQGSG 52
Query: 66 RTDKGVSALKQIVSLKLP----EEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
RTD V A Q+ LP +A ++ ++ LP I I +++V+ F+++ N + +T
Sbjct: 53 RTDARVHAKGQVAHFDLPFDIPADAVRKGLSTMLPYDIGIKKVEKVSDDFHAQFNAHNKT 112
Query: 122 YSYTCPTYAFATPQDTKDDF------RLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
Y Y T + P K ++ RL P+ +Q + Y G H++ +F +
Sbjct: 113 YFYRFSTSEYIDP--FKRNYTGHWHRRLNPE---LMQQAIGDYVGEHDWLSFVASGYQ-Q 166
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
+ R + S + +VK E I + G F+ +QIR MVGV + I G D I++
Sbjct: 167 KTTVRTVYS---AKMWVKPEEEEIWFEFSGNGFLYNQIRIMVGVLLEIGNGVRPVDDIKR 223
Query: 236 TFGLD-----QFDLPMAPGLGLLLEQVHY 259
F + QF AP GL L V Y
Sbjct: 224 LFEVKDRQQAQF---TAPAQGLYLMDVKY 249
>gi|448584856|ref|ZP_21647599.1| tRNA pseudouridine synthase A [Haloferax gibbonsii ATCC 33959]
gi|445727710|gb|ELZ79320.1| tRNA pseudouridine synthase A [Haloferax gibbonsii ATCC 33959]
Length = 297
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 99/262 (37%), Gaps = 41/262 (15%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G Y G Q R + T+E + +A G +D T +
Sbjct: 3 AFRVAYDGRPYHGFQ----------RQPDVPTVEDALFDACRALGVCDDDEEPT----DY 48
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD GVSAL Q V+ + P+ A+N LP +R + F++++ R
Sbjct: 49 AAAGRTDAGVSALAQTVAFECPDWCTPRALNSELPGTVRAWAAADAPDDFHARHRPTRRE 108
Query: 122 YSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRY 181
Y Y P D + + G H+FHN T P
Sbjct: 109 Y-----VYDLHAPSDGF--------DDDRARDAFDACRGEHDFHNLT-------PDAHGT 148
Query: 182 IMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQ 241
+ + D + +DG + + ++++ F +R++V + A+ G ++ G D
Sbjct: 149 VRAIDGD--LTRDG-DFLLVRVESGGFARELVRRLVSLVRAVGSGAAPPSKVDDVLGPDH 205
Query: 242 F----DLPMAPGLGLLLEQVHY 259
+P AP LLL V Y
Sbjct: 206 LAGPEGVPAAPPTPLLLTAVDY 227
>gi|426327418|ref|XP_004024515.1| PREDICTED: tRNA pseudouridine synthase-like 1, partial [Gorilla
gorilla gorilla]
Length = 265
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 101/245 (41%), Gaps = 45/245 (18%)
Query: 51 DSFNTPQNIQFQRAARTDKGVSALKQIVSLKL---------PEEANKEAINEHLPE-QIR 100
+ N+ + ++F ++RTD GV AL L + P E EA+N HL IR
Sbjct: 11 ERLNSVEPVRFTISSRTDAGVHALSNAAHLDVQRRSGRPPFPPEVLAEALNTHLRHPAIR 70
Query: 101 ILSIKRVTKGFNSKNNCNARTYSYTCPT--------------YAFATPQDTKDDFRLTPD 146
+L RV F++++ +RTY Y T +A P D D
Sbjct: 71 VLRAFRVPSDFHARHAATSRTYLYRLATGCHRRDELPVFERNLCWALPADCLD------- 123
Query: 147 QFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE----QPFV----KDGLEL 198
+Q + GTH+F F S P+ PS R + P V L+
Sbjct: 124 -VVAMQEAAQHLLGTHDFSAFQSAGSPV-PSPVRTLRRVSVSPGQASPLVTPEESRKLQF 181
Query: 199 ITLKIKGQSFMLHQIRKMVGVAMAIARGFTS----KDLIEKTFGLDQFDLPMAPGLGLLL 254
L+ + QSF+ Q+R+M V +A+ G + K ++E L + +AP GL L
Sbjct: 182 CNLEFESQSFLYRQVRRMTAVLVAVGLGTLAPAQVKTILESQDPLGKHQTRVAPAHGLFL 241
Query: 255 EQVHY 259
+ V Y
Sbjct: 242 KSVLY 246
>gi|57234742|ref|YP_181248.1| tRNA pseudouridine synthase A [Dehalococcoides ethenogenes 195]
gi|57225190|gb|AAW40247.1| tRNA pseudouridine synthase A [Dehalococcoides ethenogenes 195]
Length = 248
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 113/269 (42%), Gaps = 37/269 (13%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
M ++ Y G Y G Q +++G TI+G++ A+ K T + +
Sbjct: 1 MLLVIEYEGTRYSGFQ---------VQDKG-ATIQGELETAIRKL---------TSEQTR 41
Query: 61 FQRAARTDKGVSALKQIVSL----KLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ RTD GV A Q+VS L + K +N +LP I + + V + F+ +
Sbjct: 42 VSGSGRTDAGVHAAYQVVSYLSESSLGLDKIKGGLNFYLPPDIAVKEVHFVAESFDVRRR 101
Query: 117 CNARTYSYTCPTYAFATP----QDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRK 172
+R YSY +P Q + ++L ++ K EG H+F F S
Sbjct: 102 AISREYSYQILNSKTRSPLARLQAWQVPYKL---DIKLMEQAFKMLEGEHDFIAFASS-- 156
Query: 173 PLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDL 232
L P + + + + +++ + + I+ SF+ HQ+R +G + + RG S
Sbjct: 157 -LGPEIKKTVRRVNWTRLGIRE--DRLIFNIEANSFLTHQVRNTIGTLVELGRGTMSMSE 213
Query: 233 IEKTFGLDQFDL--PMAPGLGLLLEQVHY 259
E F L P AP GL L +V+Y
Sbjct: 214 FEALFEAKTPGLAGPAAPACGLSLVRVNY 242
>gi|227871757|ref|ZP_03990163.1| tRNA-pseudouridine synthase I [Oribacterium sinus F0268]
gi|227842397|gb|EEJ52621.1| tRNA-pseudouridine synthase I [Oribacterium sinus F0268]
Length = 265
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 117/270 (43%), Gaps = 35/270 (12%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ + AY G Y G Q + +G+ TI G + E L + F P ++
Sbjct: 12 IVLKLAYEGTSYHGFQ----------KQEGLSTIAGTVEEQL-------RNLF--PWKME 52
Query: 61 -FQRAARTDKGVSALKQIVSL----KLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKN 115
F A+RTD+GV AL ++S K+ E A+N +LPE IR++ V + F+ +
Sbjct: 53 NFIGASRTDQGVHALGNLLSFDTEGKVSGEQILRALNSYLPEDIRVMEAYSVQQDFHPRF 112
Query: 116 NCNARTYSYTCPTYAFATPQDTKDDFRLT-PDQFNFLQALLKQYEGTHNFHNFTS-KRKP 173
+ + Y Y+ P + + T P + ++ +G H+F +F + K +
Sbjct: 113 TPHRKAYRYSICRSKVENPLRRRTAYHYTFPLDCGKISEGMELLKGEHDFRSFANPKAQS 172
Query: 174 L--DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKD 231
L S R I F E+ +G + + ++G F+ H IR + G + + RG S
Sbjct: 173 LLQGGSSVREIYRFSMEE----EG-DYLHFSVEGNGFLYHMIRILAGTLLELGRGRISLS 227
Query: 232 LIEKTFGLDQFDL--PMAPGLGLLLEQVHY 259
+E+ L P AP GL L + Y
Sbjct: 228 QLEEILEKKDRTLAGPTAPAKGLCLMNLDY 257
>gi|322377359|ref|ZP_08051850.1| tRNA pseudouridine synthase A [Streptococcus sp. M334]
gi|321281559|gb|EFX58568.1| tRNA pseudouridine synthase A [Streptococcus sp. M334]
Length = 249
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 108/249 (43%), Gaps = 25/249 (10%)
Query: 22 FLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLK 81
F F R ++++ +I + L + N Q I A RTD GV AL Q++
Sbjct: 15 FAGFQRQPHARSVQEEIEKTLTR--------LNKGQAITVHGAGRTDSGVHALGQVLHFD 66
Query: 82 LPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDT 137
LP + ++E A++ PE I ++SI+ V F+ + +++TY + P++
Sbjct: 67 LPYQMDEEKLRFALDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDR---GRPKNP 123
Query: 138 KDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVK 193
+ T P +Q +K+ EGTH+F FT+ ++ R I + V
Sbjct: 124 MSRYYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKV-RTITEASLK---VD 179
Query: 194 DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD--QFDLPMAPGLG 251
+ + +T G F+ QIR MVG + I + I+ Q P A G
Sbjct: 180 ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPNG 239
Query: 252 LLLEQVHYD 260
L L+++ Y+
Sbjct: 240 LYLKEIRYE 248
>gi|210618029|ref|ZP_03291864.1| hypothetical protein CLONEX_04097 [Clostridium nexile DSM 1787]
gi|210149022|gb|EEA80031.1| hypothetical protein CLONEX_04097 [Clostridium nexile DSM 1787]
Length = 245
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 120/273 (43%), Gaps = 44/273 (16%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ + AY G Y G Q + G+ T+E + +AL K T ++IQ
Sbjct: 4 IKLTIAYDGTNYCGWQ---------VQPNGI-TVEEVVNKALKKL---------TGEDIQ 44
Query: 61 FQRAARTDKGVSALKQIVSL----KLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
A+RTD GV AL + +P E A+N+ LPE I I+ + V + F+ +
Sbjct: 45 VIGASRTDSGVHALGNVAVFDTHTTIPPERISYALNQRLPEDIVIVKSEEVAEDFHPRYC 104
Query: 117 CNARTYSYTCPTYAFATPQDTKDDFRLTPD-QFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
++TY Y P ++ ++ D ++ G H+F +F + R ++
Sbjct: 105 DCSKTYEYHILNMRIPIPTKRLTNYFVSYDLDVEKMRKAAGYLIGEHDFVSFCNVRTDVE 164
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGF----TSKD 231
+ E +KDG E IT++I G F+ + +R +VG + + RGF K+
Sbjct: 165 DTVRTV-----TELEILKDGEE-ITIRISGNGFLYNMVRIIVGTLIRVGRGFYEPEKVKE 218
Query: 232 LIE----KTFGLDQFDLPMAPGLGLLLEQVHYD 260
++E K G+ AP GL+L ++ Y+
Sbjct: 219 ILEAKDRKAAGV------TAPPHGLILAEIRYE 245
>gi|320582058|gb|EFW96276.1| Non-essential tRNA:pseudouridine synthase [Ogataea parapolymorpha
DL-1]
Length = 404
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 117/291 (40%), Gaps = 67/291 (23%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ F+Y G Y GL + + T+E I++AL K + P +
Sbjct: 60 IALKFSYLGWNYHGLAYQN-------DTSNIPTVELFILKALEKTKLIRNLD---PTDCD 109
Query: 61 FQRAARTDKGVSALKQIVSLKL------PEEANK----------EAINEHLPEQIRILSI 104
F R RTDKGVSA+ Q++SL + E AN + +N+ LPE IRI SI
Sbjct: 110 FSRCGRTDKGVSAMNQVISLVVRSNLTQDEMANPLNDVKELDYVKILNKVLPEDIRIHSI 169
Query: 105 K-RVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHN 163
R +GF+++ +C +R Y Y F +Q + G +
Sbjct: 170 CLRPPEGFDARFSCLSRHYKYF---------------FEQANLNIEKMQQAASYFVGEQD 214
Query: 164 FHNFTS----------KRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQI 213
F NF KRK + S R K G + ++G +F+ HQ+
Sbjct: 215 FRNFCKVDGSKQIVNYKRKIISSSIER-----------TKFGHKTYVFSLRGSAFLWHQV 263
Query: 214 RKMVGVAMAIARGFTSKDLIEKTFGLDQF----DLPMAPGLGLLLEQVHYD 260
R M+ + + + +++ K + F + +A L L+L +D
Sbjct: 264 RSMMSILFLVGQELEEPEIVRKLLDVKLFPGRPNYTIASPLPLVLYDCEFD 314
>gi|448734702|ref|ZP_21716923.1| tRNA pseudouridine synthase A [Halococcus salifodinae DSM 8989]
gi|445799611|gb|EMA49985.1| tRNA pseudouridine synthase A [Halococcus salifodinae DSM 8989]
Length = 275
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 100/262 (38%), Gaps = 42/262 (16%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G Y+G Q R + T+E + L + + + P +
Sbjct: 10 AFRVAYDGQPYYGFQ----------RQPDVPTVEDAVFNGLRELDVLDAAADKPPA---Y 56
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD+GVSA+ Q V+ + PE A+N LP IR + F++ ++ ART
Sbjct: 57 AAAGRTDRGVSAVAQTVAFECPEWLTPAALNGELPATIRAWASAEAPAEFHATHDATART 116
Query: 122 YSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRY 181
Y TY P D R L G H+ HN T LD S +
Sbjct: 117 Y-----TYHLHAPAADVDRAREA----------LSVLAGEHDLHNLT-----LDDSGTVR 156
Query: 182 IMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQ 241
+ +P ++ E + ++++ F +R++V + +A G I +
Sbjct: 157 TL-----EPAIEPDGEFLVIELRAGGFSRQLVRRIVALVRDVATGAAPLSKIGRVLSPTP 211
Query: 242 FDLP----MAPGLGLLLEQVHY 259
P AP L+L V Y
Sbjct: 212 LSGPEGVGPAPAAPLVLTDVSY 233
>gi|341882334|gb|EGT38269.1| hypothetical protein CAEBREN_00927 [Caenorhabditis brenneri]
Length = 413
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 101/244 (41%), Gaps = 54/244 (22%)
Query: 33 TIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKL---------- 82
T+E +M+AL K + + +N +F R RTDKGVSA KQ ++ +
Sbjct: 67 TVEKHLMDALLKTKMI-----ESWENCEFSRCGRTDKGVSAFKQTAAVVVRSTCPQDPDV 121
Query: 83 ------PEEANK------------EAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSY 124
PE+ + +N LP+ IR+ + V + FN++ +CN RTY Y
Sbjct: 122 FWDESTPEDVKNNYKSKPEELPYVKMLNGLLPKTIRVFAWAPVKREFNARFDCNRRTYKY 181
Query: 125 TCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTS---KRKPLDPSCSRY 181
+ FA K D L ++ +LL G H++ NF K L + R
Sbjct: 182 S-----FA-----KADLDL--EKMREAASLLI---GEHDYINFCQMDLNEKRLTQATVRK 226
Query: 182 IMSFDCEQPFVKDG---LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFG 238
I EQ G ++ L + G F+ H IR +V V I RG L+ +
Sbjct: 227 IYEVKVEQVSTHPGNDIYSMVELTVSGSGFLWHMIRYIVTVLQEIGRGNEQPTLVSELLD 286
Query: 239 LDQF 242
++
Sbjct: 287 TQKY 290
>gi|15903494|ref|NP_359044.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae R6]
gi|116516785|ref|YP_816881.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae D39]
gi|148988650|ref|ZP_01820083.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP6-BS73]
gi|149004327|ref|ZP_01829087.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP14-BS69]
gi|169833383|ref|YP_001694996.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae
Hungary19A-6]
gi|182684548|ref|YP_001836295.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CGSP14]
gi|221232354|ref|YP_002511507.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae ATCC
700669]
gi|225855038|ref|YP_002736550.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae JJA]
gi|237649225|ref|ZP_04523477.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CCRI 1974]
gi|237822076|ref|ZP_04597921.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CCRI
1974M2]
gi|307127806|ref|YP_003879837.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 670-6B]
gi|415700074|ref|ZP_11457788.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 459-5]
gi|415750000|ref|ZP_11477944.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SV35]
gi|415752816|ref|ZP_11479798.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SV36]
gi|417677324|ref|ZP_12326731.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA17545]
gi|417696757|ref|ZP_12345935.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47368]
gi|418074430|ref|ZP_12711683.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA11184]
gi|418076826|ref|ZP_12714059.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47502]
gi|418079036|ref|ZP_12716258.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 4027-06]
gi|418081228|ref|ZP_12718438.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 6735-05]
gi|418087286|ref|ZP_12724455.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47033]
gi|418089962|ref|ZP_12727116.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA43265]
gi|418092201|ref|ZP_12729341.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA44452]
gi|418098928|ref|ZP_12736025.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 6901-05]
gi|418105708|ref|ZP_12742764.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA44500]
gi|418108023|ref|ZP_12745060.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA41410]
gi|418110548|ref|ZP_12747569.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA49447]
gi|418117281|ref|ZP_12754250.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 6963-05]
gi|418121667|ref|ZP_12758610.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA44194]
gi|418123934|ref|ZP_12760865.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA44378]
gi|418128478|ref|ZP_12765371.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae NP170]
gi|418133044|ref|ZP_12769915.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA11304]
gi|418134748|ref|ZP_12771605.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA11426]
gi|418137671|ref|ZP_12774509.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA11663]
gi|418144559|ref|ZP_12781354.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA13494]
gi|418155581|ref|ZP_12792308.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA16242]
gi|418157885|ref|ZP_12794601.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA16833]
gi|418169595|ref|ZP_12806237.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA19077]
gi|418173995|ref|ZP_12810607.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA41277]
gi|418178656|ref|ZP_12815239.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA41565]
gi|418183137|ref|ZP_12819695.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA43380]
gi|418189838|ref|ZP_12826350.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47373]
gi|418202820|ref|ZP_12839249.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA52306]
gi|418217048|ref|ZP_12843728.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae
Netherlands15B-37]
gi|418221623|ref|ZP_12848276.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47751]
gi|418225978|ref|ZP_12852606.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae NP112]
gi|419423509|ref|ZP_13963722.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA43264]
gi|419431985|ref|ZP_13972118.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae EU-NP05]
gi|419433884|ref|ZP_13974002.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA40183]
gi|419440790|ref|ZP_13980835.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA40410]
gi|419455961|ref|ZP_13995918.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae EU-NP04]
gi|419458197|ref|ZP_13998139.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA02254]
gi|419460404|ref|ZP_14000332.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA02270]
gi|419464984|ref|ZP_14004875.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA04175]
gi|419467208|ref|ZP_14007089.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA05248]
gi|419469409|ref|ZP_14009277.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA06083]
gi|419471498|ref|ZP_14011357.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA07914]
gi|419473665|ref|ZP_14013514.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA13430]
gi|419482649|ref|ZP_14022436.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA40563]
gi|419489211|ref|ZP_14028960.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA44386]
gi|419493723|ref|ZP_14033448.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47210]
gi|419497972|ref|ZP_14037679.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47522]
gi|419512990|ref|ZP_14052622.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA05578]
gi|419517196|ref|ZP_14056812.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA02506]
gi|421211483|ref|ZP_15668465.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2070035]
gi|421232315|ref|ZP_15688956.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2080076]
gi|421236701|ref|ZP_15693298.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2071004]
gi|421266601|ref|ZP_15717481.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SPAR27]
gi|421273149|ref|ZP_15723990.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SPAR55]
gi|421281595|ref|ZP_15732392.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA04672]
gi|421283735|ref|ZP_15734521.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA04216]
gi|421286010|ref|ZP_15736786.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA60190]
gi|421299061|ref|ZP_15749748.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA60080]
gi|421307806|ref|ZP_15758448.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA60132]
gi|421310007|ref|ZP_15760632.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA62681]
gi|38258775|sp|Q8CWQ1.1|TRUA_STRR6 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|122278273|sp|Q04JF7.1|TRUA_STRP2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|238688376|sp|B1ID11.1|TRUA_STRPI RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|238691180|sp|B2IRB1.1|TRUA_STRPS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|254764868|sp|B8ZM12.1|TRUA_STRPJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|254764870|sp|C1CFH9.1|TRUA_STRZJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|15459107|gb|AAL00255.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae R6]
gi|116077361|gb|ABJ55081.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae D39]
gi|147757704|gb|EDK64720.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP14-BS69]
gi|147925851|gb|EDK76926.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP6-BS73]
gi|168995885|gb|ACA36497.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae
Hungary19A-6]
gi|182629882|gb|ACB90830.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CGSP14]
gi|220674815|emb|CAR69389.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae ATCC
700669]
gi|225723432|gb|ACO19285.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae JJA]
gi|306484868|gb|ADM91737.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 670-6B]
gi|332072765|gb|EGI83246.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA17545]
gi|332200155|gb|EGJ14228.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47368]
gi|353746563|gb|EHD27223.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 4027-06]
gi|353746966|gb|EHD27624.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47502]
gi|353748499|gb|EHD29151.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA11184]
gi|353751967|gb|EHD32598.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 6735-05]
gi|353758302|gb|EHD38894.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47033]
gi|353761153|gb|EHD41725.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA43265]
gi|353762901|gb|EHD43458.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA44452]
gi|353768910|gb|EHD49432.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 6901-05]
gi|353775884|gb|EHD56363.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA44500]
gi|353778300|gb|EHD58768.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA41410]
gi|353781945|gb|EHD62385.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA49447]
gi|353787962|gb|EHD68360.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 6963-05]
gi|353792503|gb|EHD72875.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA44194]
gi|353795754|gb|EHD76100.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA44378]
gi|353798977|gb|EHD79300.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae NP170]
gi|353804927|gb|EHD85205.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA11304]
gi|353807025|gb|EHD87297.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA13494]
gi|353819830|gb|EHE00019.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA16242]
gi|353824333|gb|EHE04507.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA16833]
gi|353834186|gb|EHE14291.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA19077]
gi|353837951|gb|EHE18032.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA41277]
gi|353842715|gb|EHE22761.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA41565]
gi|353848120|gb|EHE28137.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA43380]
gi|353853565|gb|EHE33546.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47373]
gi|353867377|gb|EHE47272.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA52306]
gi|353870321|gb|EHE50194.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae
Netherlands15B-37]
gi|353874933|gb|EHE54787.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47751]
gi|353881175|gb|EHE60989.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae NP112]
gi|353900626|gb|EHE76177.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA11663]
gi|353901985|gb|EHE77515.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA11426]
gi|379529861|gb|EHY95102.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA02254]
gi|379530540|gb|EHY95779.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA02270]
gi|379536584|gb|EHZ01770.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA04175]
gi|379542955|gb|EHZ08107.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA05248]
gi|379544213|gb|EHZ09358.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA06083]
gi|379546214|gb|EHZ11353.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA07914]
gi|379550829|gb|EHZ15925.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA13430]
gi|379576885|gb|EHZ41809.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA40183]
gi|379577860|gb|EHZ42777.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA40410]
gi|379579241|gb|EHZ44148.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA40563]
gi|379586081|gb|EHZ50935.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA43264]
gi|379586753|gb|EHZ51603.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA44386]
gi|379592296|gb|EHZ57112.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47210]
gi|379598805|gb|EHZ63590.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47522]
gi|379627937|gb|EHZ92543.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae EU-NP04]
gi|379629066|gb|EHZ93667.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae EU-NP05]
gi|379634155|gb|EHZ98720.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA05578]
gi|379639269|gb|EIA03813.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA02506]
gi|381308463|gb|EIC49306.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SV36]
gi|381314770|gb|EIC55536.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 459-5]
gi|381318294|gb|EIC59019.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SV35]
gi|395572591|gb|EJG33186.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2070035]
gi|395594818|gb|EJG55053.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2080076]
gi|395601464|gb|EJG61611.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2071004]
gi|395866669|gb|EJG77797.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SPAR27]
gi|395874352|gb|EJG85438.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SPAR55]
gi|395880421|gb|EJG91473.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA04216]
gi|395880860|gb|EJG91911.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA04672]
gi|395885997|gb|EJG97018.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA60190]
gi|395900532|gb|EJH11470.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA60080]
gi|395907191|gb|EJH18085.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA60132]
gi|395909622|gb|EJH20497.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA62681]
Length = 249
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 105/249 (42%), Gaps = 25/249 (10%)
Query: 22 FLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLK 81
F F R ++++ +I + L + N Q I A RTD GV AL Q++
Sbjct: 15 FAGFQRQSHARSVQEEIEKTLTR--------LNKGQTITVHGAGRTDSGVHALGQVIHFD 66
Query: 82 LPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDT 137
LP + ++E A++ PE I ++SI+ V F+ + +++TY + P++
Sbjct: 67 LPYQMDEEKLRFALDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDR---GRPKNP 123
Query: 138 KDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVK 193
T P +Q +K+ EGTH+F FT+ S + + V
Sbjct: 124 MRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTAS----GTSVEDKVRTITEASLIVD 179
Query: 194 DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD--QFDLPMAPGLG 251
+ + +T G F+ QIR MVG + I + I+ Q P A G
Sbjct: 180 ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPNG 239
Query: 252 LLLEQVHYD 260
L L+++ Y+
Sbjct: 240 LYLKEIRYE 248
>gi|148683104|gb|EDL15051.1| mCG23338, isoform CRA_b [Mus musculus]
Length = 284
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 104/236 (44%), Gaps = 29/236 (12%)
Query: 53 FNTPQNIQFQRAARTDKGVSALKQIVSLKL----------PEEANKEAINEHLPE-QIRI 101
N+ ++F ++RTD GV AL L + PE K A+N HL IR+
Sbjct: 16 LNSVDPVRFTISSRTDAGVHALSNAAHLDIQRRPGQSPFSPEVVAK-ALNTHLKHPAIRV 74
Query: 102 LSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQ----DTKDDFRLTPDQFNF--LQALL 155
L RV F++++ +RTY Y T Q + + L + + +Q
Sbjct: 75 LKAFRVPNDFHARHAATSRTYQYRLATGCSWPNQLPVFEQNVCWALQTEYLDMAAMQEAA 134
Query: 156 KQYEGTHNFHNFTSKRKPLDPSCS---RYIMSFDCEQPFV----KDGLELITLKIKGQSF 208
+ GTH+F F S P+ + R +S PFV L+ TL+ + QSF
Sbjct: 135 QHLLGTHDFSAFQSAGSPVTNTVRTLRRVSVSPGPASPFVLPEGSRRLQFWTLEFESQSF 194
Query: 209 MLHQIRKMVGVAMAIARGFTS----KDLIEKTFGLDQFDLPMAPGLGLLLEQVHYD 260
+ Q+R+M V +A+ G + K ++E L ++ +AP GL L+ V YD
Sbjct: 195 LYRQVRRMTAVLVAVGLGILAPTQVKVILESQDPLGKYQARVAPARGLFLKSVLYD 250
>gi|23503259|ref|NP_699170.1| tRNA pseudouridine synthase-like 1 [Homo sapiens]
gi|52783232|sp|Q8N0Z8.1|PUSL1_HUMAN RecName: Full=tRNA pseudouridine synthase-like 1; AltName:
Full=tRNA pseudouridylate synthase-like 1; AltName:
Full=tRNA-uridine isomerase-like 1
gi|21706547|gb|AAH34304.1| Pseudouridylate synthase-like 1 [Homo sapiens]
gi|22761287|dbj|BAC11527.1| unnamed protein product [Homo sapiens]
gi|119576649|gb|EAW56245.1| pseudouridylate synthase-like 1 [Homo sapiens]
Length = 303
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 120/282 (42%), Gaps = 44/282 (15%)
Query: 15 LQSKYLFFLIFCRN--QGMKTIEGDIMEALFKAGFVTE--DSFNTPQNIQFQRAARTDKG 70
++++YL + + G+ + G A+ ++ E + N+ + ++F ++RTD G
Sbjct: 10 VRARYLVYFQYVGTDFNGVAAVRG-TQRAVGVQNYLEEAAERLNSVEPVRFTISSRTDAG 68
Query: 71 VSALKQIVSLKL---------PEEANKEAINEHLPE-QIRILSIKRVTKGFNSKNNCNAR 120
V AL L + P E EA+N HL IR+L RV F++++ +R
Sbjct: 69 VHALSNAAHLDVQRRSGRPPFPPEVLAEALNTHLRHPAIRVLRAFRVPSDFHARHAATSR 128
Query: 121 TYSYTCPTYAFATPQDTKDD---------FRLTPDQFNF--LQALLKQYEGTHNFHNFTS 169
TY Y AT +D+ + L D + +Q + GTH+F F S
Sbjct: 129 TY-----LYRLATGCHRRDELPVFERNLCWTLPADCLDMVAMQEAAQHLLGTHDFSAFQS 183
Query: 170 KRKPLDPSCSRYIMSFDCE----QPFV----KDGLELITLKIKGQSFMLHQIRKMVGVAM 221
P+ PS R + P V L L+ + QSF+ Q+R+M V +
Sbjct: 184 AGSPV-PSPVRTLRRVSVSPGQASPLVTPEESRKLRFWNLEFESQSFLYRQVRRMTAVLV 242
Query: 222 AIARGFTS----KDLIEKTFGLDQFDLPMAPGLGLLLEQVHY 259
A+ G + K ++E L + +AP GL L+ V Y
Sbjct: 243 AVGLGALAPAQVKTILESQDPLGKHQTRVAPAHGLFLKSVLY 284
>gi|317154696|ref|YP_004122744.1| tRNA pseudouridine synthase A [Desulfovibrio aespoeensis Aspo-2]
gi|316944947|gb|ADU63998.1| tRNA pseudouridine synthase A [Desulfovibrio aespoeensis Aspo-2]
Length = 258
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 109/267 (40%), Gaps = 36/267 (13%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
+ AY G + G Q + R+ +T++G I AL + +P ++
Sbjct: 6 LTLAYDGTDFSGWQLQ-------ARD---RTVQGVIETAL-------TEIMGSP--VRLH 46
Query: 63 RAARTDKGVSALKQI-------VSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKN 115
A RTD GV AL Q + +P + A+N LPE +R+L+ +RV F+++
Sbjct: 47 GAGRTDAGVHALGQTAHFDCQDIRASIPWQC---ALNARLPEDVRVLACRRVADDFHARY 103
Query: 116 NCNARTYSYT-CPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
A+TY YT T F PQ + + P F ++A + G H+F +F + P+
Sbjct: 104 QAQAKTYEYTLWHTREFCLPQRRRFAWNCGPLDFTAMEAAARLLTGEHDFASFQNTGTPV 163
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+ P + + + F+ +R +VG A RG + D
Sbjct: 164 RSTIRTVTAISRHPGPTPHESV----WRFTANGFLKQMVRNLVGCLAACGRGRLAPDEAG 219
Query: 235 KT-FGLDQFDLP-MAPGLGLLLEQVHY 259
+ D+ P AP GL L V Y
Sbjct: 220 RILLAADRALAPATAPPQGLTLISVAY 246
>gi|354547215|emb|CCE43949.1| hypothetical protein CPAR2_501740 [Candida parapsilosis]
Length = 440
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 112/268 (41%), Gaps = 54/268 (20%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ FAY G Y GL ++ + T+E I++ L K + E ++
Sbjct: 84 VALRFAYLGWNYNGLAYQF-------EPTPLPTVEETILKTLSKIKLIPEPI----DQVE 132
Query: 61 FQRAARTDKGVSALKQIVSLKL-----PEEANKEA-----------INEHLPEQIRILSI 104
F R RTDKGVSA+ Q++S+KL PEE IN +LP I++ SI
Sbjct: 133 FSRCGRTDKGVSAMNQVISIKLRSNLTPEEQQSSTNDDREIDYLTIINANLPSDIKVHSI 192
Query: 105 K-RVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHN 163
F+++ +C R Y Y F+ + + + + Y+G H+
Sbjct: 193 CLHPPADFDARFSCKNRHYRYL---------------FKSSNLDIDAMNKAAEYYQGQHD 237
Query: 164 FHNFTSKRKPLDPSCSRYIMSFD---CEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVA 220
F NF LD S+ I +F+ + +L + G +F+ HQ+R MV +
Sbjct: 238 FRNFCK----LD--GSKQITNFERFIYSSKIIHLEDDLYCFDLVGTAFLWHQVRCMVAIL 291
Query: 221 MAIARGFTSKDLIEKTFGLDQFDLPMAP 248
+ + +++ + ++ P P
Sbjct: 292 FLVGQHLEKPEIVTDLMDITKY--PTKP 317
>gi|339498019|ref|ZP_08658995.1| tRNA pseudouridine synthase A [Leuconostoc pseudomesenteroides KCTC
3652]
Length = 256
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 120/268 (44%), Gaps = 30/268 (11%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRN--QGMKTIEGDIMEALFKAGFVTEDSFNTPQN-IQ 60
+ AY G +FG Q + +N + +T++G++ + V PQ I+
Sbjct: 7 IVAYDGTDFFGFQLQ-------TKNGVESARTVQGELNK-------VVNQMAKKPQPPIK 52
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEAN----KEAINEHLPEQIRILSIKRVTKGFNSKNN 116
A+RTD GV A Q+V P + ++ +N LP + + S+ RV+ F+++ N
Sbjct: 53 VVGASRTDTGVHAFGQVVHFDFPYDIASDNFRKGLNTLLPRDVLVKSVTRVSDDFHARFN 112
Query: 117 CNARTYSYTCPTYAFATP--QDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
+A+ Y Y T + P + F D + +++ L + G H+F +F +
Sbjct: 113 THAKRYIYRISTLDYTDPFKRHYTGHFHWHLD-VDRMKSALPDFIGEHDFASFAASGNET 171
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+ R I + + + L L+ +G +F+ +QIR MVGV + I G I+
Sbjct: 172 ATTVRR-ITRVELTEKAEEHELVLV---FEGNAFLYNQIRIMVGVLLEIGTGRRPVHDIQ 227
Query: 235 KTFGLDQFDLP--MAPGLGLLLEQVHYD 260
+ + + AP GL L+++ Y+
Sbjct: 228 RLIAVKDREQARFTAPASGLYLDEISYN 255
>gi|255540533|ref|XP_002511331.1| pseudouridylate synthase, putative [Ricinus communis]
gi|223550446|gb|EEF51933.1| pseudouridylate synthase, putative [Ricinus communis]
Length = 178
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 63/121 (52%), Gaps = 20/121 (16%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ FAY GVGY G+Q +N G KTIEG++ EALF V E P+
Sbjct: 33 IAIFFAYCGVGYQGMQ----------KNPGTKTIEGELEEALFHFDAVPEQDRGCPKRYD 82
Query: 61 FQRAARTDKGVSALKQIVSLKL----PEEANKEAINEHLPEQIRILSIKRVT-KGFNSKN 115
+ ARTDKGVSA+ Q++S + P + +N LP IRI KRVT G K
Sbjct: 83 W---ARTDKGVSAVGQVISGRFHIDPPGLVGR--LNSILPSHIRIFGYKRVTASGLGVKE 137
Query: 116 N 116
N
Sbjct: 138 N 138
>gi|336233687|ref|YP_004586303.1| tRNA pseudouridine synthase A [Geobacillus thermoglucosidasius
C56-YS93]
gi|335360542|gb|AEH46222.1| tRNA pseudouridine synthase A [Geobacillus thermoglucosidasius
C56-YS93]
Length = 248
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 113/272 (41%), Gaps = 49/272 (18%)
Query: 5 FAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRA 64
+Y G +FG Q + G +T++G++ +AL + + + I+ +
Sbjct: 9 LSYDGTHFFGYQIQ----------PGKRTVQGELEQAL--------EQIHKGKAIRVTAS 50
Query: 65 ARTDKGVSALKQIVS----LKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNAR 120
RTD GV A Q++ L L E K+A+N LP+ I I + F+++ + A+
Sbjct: 51 GRTDAGVHAYGQVIHFDTFLSLSPEQWKKALNALLPDDIVIKDAQEAAPSFHARFSATAK 110
Query: 121 TYSYTCPT----------YAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSK 170
Y Y Y + P P + L+ EGTH+F +F S
Sbjct: 111 EYRYKVRIAQERDVFLRHYCYHYPY---------PLDMEAMGRALRLIEGTHDFTSFCSA 161
Query: 171 RKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSK 230
+ +D R I D V+D +L+ G F+ + +R +VG + + +G S
Sbjct: 162 KTDVDDRV-RTIYKADMT---VRD--DLLEFCFIGNGFLYNMVRIIVGTILEVGQGKRSV 215
Query: 231 DLIEKTFGLD--QFDLPMAPGLGLLLEQVHYD 260
D I +F AP GL L +V+YD
Sbjct: 216 DSISSALAAKDRRFAGKTAPPQGLYLWKVYYD 247
>gi|163816114|ref|ZP_02207482.1| hypothetical protein COPEUT_02298 [Coprococcus eutactus ATCC 27759]
gi|158448534|gb|EDP25529.1| tRNA pseudouridine synthase A [Coprococcus eutactus ATCC 27759]
Length = 271
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 115/288 (39%), Gaps = 56/288 (19%)
Query: 5 FAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFK---------AGFVTED---- 51
F+Y G Y G +SK T+EG I L K A E+
Sbjct: 8 FSYDGTRYHGWESK----------TNADTVEGRIEAVLSKMVDGDNGKTADVCRENMSAD 57
Query: 52 --SFNTPQNIQFQRAARTDKGVSALKQIVSLKL-----PEEANKEAINEHLPEQIRILSI 104
TP + A RTD GV A + S +L P+E K+ +N +LP I L +
Sbjct: 58 IRDTKTPAKVDIHGAGRTDAGVHARAMVASGRLNTNRTPDEI-KDYLNRYLPADICALDV 116
Query: 105 KRVTKGFNSKNNCNARTYSYTC----------PTYAFATPQDTKDDFRLTPDQFNFLQAL 154
F+++ N + Y YT Y + PQ + D ++L
Sbjct: 117 TVAGDRFHARLNATGKIYEYTLYVGLEKPVFDRNYVWCVPQGSVLDVDAMKKAASYLV-- 174
Query: 155 LKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIR 214
G H+F +F K + S R I +D E VK+G + + ++ G F+ + +R
Sbjct: 175 -----GKHDFRSFCGNNK-MKKSTVRTI--YDVE--IVKEG-DYVRMRFHGNGFLQNMVR 223
Query: 215 KMVGVAMAIARG-FTSKDLIEKTFGLD-QFDLPMAPGLGLLLEQVHYD 260
+ G + I G ++ + E G+D Q P AP GL L +V YD
Sbjct: 224 ILTGTLVEIGYGHMDAEHMPEIIVGMDRQLAGPTAPPHGLCLLKVEYD 271
>gi|341879449|gb|EGT35384.1| hypothetical protein CAEBREN_20868 [Caenorhabditis brenneri]
Length = 413
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 96/228 (42%), Gaps = 54/228 (23%)
Query: 33 TIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKL---------- 82
T+E +M+AL K + + +N +F R RTDKGVSA KQ ++ +
Sbjct: 67 TVEKHLMDALLKTKMI-----ESWENCEFSRCGRTDKGVSAFKQTAAVVVRSTCPQDPDV 121
Query: 83 ------PEEANK------------EAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSY 124
PE+ + +N LP+ IR+ + V + FN++ +CN RTY Y
Sbjct: 122 FWDESTPEDVKNNYKSKPEELPYVKMLNGLLPKTIRVFAWAPVKREFNARFDCNRRTYKY 181
Query: 125 TCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTS---KRKPLDPSCSRY 181
+ FA K D L ++ +LL G H++ NF K L + R
Sbjct: 182 S-----FA-----KADLDL--EKMREAASLLI---GEHDYINFCQMDLNEKRLTQTTVRK 226
Query: 182 IMSFDCEQPFVKDG---LELITLKIKGQSFMLHQIRKMVGVAMAIARG 226
I EQ G ++ L + G F+ H IR +V V I RG
Sbjct: 227 IYEVKVEQVSTHPGNDIYSMVELTVSGSGFLWHMIRYIVTVLQEIGRG 274
>gi|312150754|gb|ADQ31889.1| pseudouridylate synthase-like 1 [synthetic construct]
Length = 303
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 120/282 (42%), Gaps = 44/282 (15%)
Query: 15 LQSKYLFFLIFCRN--QGMKTIEGDIMEALFKAGFVTE--DSFNTPQNIQFQRAARTDKG 70
++++YL + + G+ + G A+ ++ E + N+ + ++F ++RTD G
Sbjct: 10 VRARYLVYFQYVGTDFNGVAAVRG-TQRAVGVQNYLEEAAERLNSVEPVRFTISSRTDAG 68
Query: 71 VSALKQIVSLKL---------PEEANKEAINEHLPE-QIRILSIKRVTKGFNSKNNCNAR 120
V AL L + P E EA+N HL IR+L RV F++++ +R
Sbjct: 69 VHALSNAAHLDVQRRSGRPPFPPEVLAEALNTHLRHPAIRVLRAFRVPSDFHARHAATSR 128
Query: 121 TYSYTCPTYAFATPQDTKDD---------FRLTPDQFNF--LQALLKQYEGTHNFHNFTS 169
TY Y AT +D+ + L D + +Q + GTH+F F S
Sbjct: 129 TY-----LYRLATGCHRRDELPVFERNLCWTLPADCLDMVAMQEAAQHLLGTHDFSAFQS 183
Query: 170 KRKPLDPSCSRYIMSFDCE----QPFV----KDGLELITLKIKGQSFMLHQIRKMVGVAM 221
P+ PS R + P V L L+ + QSF+ Q+R+M V +
Sbjct: 184 AGSPV-PSPVRTLRRVSVSPGQASPLVTPEESRKLRFWNLEFESQSFLYRQVRRMTAVLV 242
Query: 222 AIARGFTS----KDLIEKTFGLDQFDLPMAPGLGLLLEQVHY 259
A+ G + K ++E L + +AP GL L+ V Y
Sbjct: 243 AVGLGALAPAQVKTILESQDPLGKHQTRVAPAHGLFLKSVLY 284
>gi|147919589|ref|YP_686671.1| tRNA pseudouridine synthase A [Methanocella arvoryzae MRE50]
gi|121687867|sp|Q0W2P8.1|TRUA_UNCMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|110622067|emb|CAJ37345.1| tRNA pseudouridine synthase [Methanocella arvoryzae MRE50]
Length = 266
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 123/300 (41%), Gaps = 54/300 (18%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A+ AY G ++G Q++ G+ T+E ++ +AL +AG + +
Sbjct: 4 ALKIAYVGTNFYGSQAQ----------PGLPTVESELRKALEEAGAIK-------LGTKI 46
Query: 62 QRAARTDKGVSALKQIVSLKL--PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV AL Q+V+ + P+ IN LP+ + + V F+ + + +
Sbjct: 47 AMAGRTDAGVHALGQVVAFEQADPKLTAPRIINSKLPKDLWAYARAEVPDDFDPRRHATS 106
Query: 120 RTYSYTCPTYAFATPQDTKDDFRLTPDQF-NFLQALLKQYEGTHNFHNFTSKRKPLDPSC 178
R Y Y YA PD L+ ++ GTH+F NF+S
Sbjct: 107 REYRYIL--YA--------------PDVIERRLKECSSRFLGTHDFTNFSSV------EA 144
Query: 179 SRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFG 238
+Y + K G + + I+ SF+ + +RK+V + IEK F
Sbjct: 145 GKYPVRTVTRLDIAKRG-DFYIIDIEADSFLWNMVRKIVTALRLVGENKRPDGWIEKMFD 203
Query: 239 LDQFD--LPMAPGLGLLLEQVHY-------DLYNQKYGQDGMHESLHFHEVDKEV-NEFR 288
+ + P APG GL L +V+Y D Y ++ M S +H E+ EF+
Sbjct: 204 PEYREGIPPAAPG-GLYLSRVNYDGIAFEEDEYARQRAYQRMLNSFEWHHTIAEIYKEFK 262
>gi|255654196|ref|ZP_05399605.1| tRNA pseudouridine synthase 1 [Clostridium difficile QCD-23m63]
gi|296449765|ref|ZP_06891534.1| tRNA-pseudouridine synthase I [Clostridium difficile NAP08]
gi|296877828|ref|ZP_06901851.1| tRNA-pseudouridine synthase I [Clostridium difficile NAP07]
gi|296261363|gb|EFH08189.1| tRNA-pseudouridine synthase I [Clostridium difficile NAP08]
gi|296431170|gb|EFH16994.1| tRNA-pseudouridine synthase I [Clostridium difficile NAP07]
Length = 243
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 105/232 (45%), Gaps = 21/232 (9%)
Query: 34 IEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLPEEANKEAI-- 91
I+G I A++ T + + + RTD GV A+ QI + K + E+I
Sbjct: 27 IQGTIERAIYDI---------TKEKVSLIGSGRTDSGVHAIGQIANFKTNSSISIESIPM 77
Query: 92 --NEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPD-QF 148
N LP+ I ++ V F+S+ + +TY Y F P ++ +++ + F
Sbjct: 78 ALNAKLPKDISVIDACEVNDDFHSRYSAKGKTYKYLVYNSKFRNPILSEISYQVKYELDF 137
Query: 149 NFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSF 208
+ + + K GTH+F F S + + R I D + KD +LIT +I G F
Sbjct: 138 DKMCSEAKLLLGTHDFKGFMSSGSSVKDTV-RTIYDIDIIR---KD--DLITFEISGNGF 191
Query: 209 MLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLP-MAPGLGLLLEQVHY 259
+ + +R +VG + I RG ++ ++ + AP GL L++VHY
Sbjct: 192 LYNMVRIIVGTLVDIGRGRINEPFLDIIQSKTRSRCGHTAPAQGLFLKKVHY 243
>gi|148997657|ref|ZP_01825221.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP11-BS70]
gi|168575203|ref|ZP_02721166.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae MLV-016]
gi|194397044|ref|YP_002038227.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae G54]
gi|307068239|ref|YP_003877205.1| pseudouridylate synthase [Streptococcus pneumoniae AP200]
gi|417698994|ref|ZP_12348165.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA41317]
gi|418148975|ref|ZP_12785737.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA13856]
gi|419453753|ref|ZP_13993723.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae EU-NP03]
gi|419491511|ref|ZP_14031249.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47179]
gi|419504350|ref|ZP_14044018.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47760]
gi|419506495|ref|ZP_14046156.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA49194]
gi|419532811|ref|ZP_14072326.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47794]
gi|421275324|ref|ZP_15726153.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA52612]
gi|421314488|ref|ZP_15765075.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47562]
gi|238690845|sp|B5E6N8.1|TRUA_STRP4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|147756156|gb|EDK63198.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP11-BS70]
gi|183578806|gb|EDT99334.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae MLV-016]
gi|194356711|gb|ACF55159.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae G54]
gi|306409776|gb|ADM85203.1| Pseudouridylate synthase [Streptococcus pneumoniae AP200]
gi|332199640|gb|EGJ13715.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA41317]
gi|353811311|gb|EHD91553.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA13856]
gi|379592873|gb|EHZ57688.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47179]
gi|379605331|gb|EHZ70082.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47794]
gi|379605738|gb|EHZ70488.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47760]
gi|379608409|gb|EHZ73155.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA49194]
gi|379625823|gb|EHZ90449.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae EU-NP03]
gi|395873288|gb|EJG84380.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA52612]
gi|395913173|gb|EJH24026.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47562]
Length = 249
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 105/249 (42%), Gaps = 25/249 (10%)
Query: 22 FLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLK 81
F F R ++++ +I + L + N Q I A RTD GV AL Q++
Sbjct: 15 FAGFQRQSHARSVQEEIEKTLTR--------LNKGQTITVHGAGRTDSGVHALGQVIHFD 66
Query: 82 LPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDT 137
LP + ++E A++ PE I ++SI+ V F+ + +++TY + P++
Sbjct: 67 LPYQMDEEKLRFALDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFILDR---GRPKNP 123
Query: 138 KDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVK 193
T P +Q +K+ EGTH+F FT+ S + + V
Sbjct: 124 MRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTAS----GTSVEDKVRTITEASLIVD 179
Query: 194 DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD--QFDLPMAPGLG 251
+ + +T G F+ QIR MVG + I + I+ Q P A G
Sbjct: 180 ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPNG 239
Query: 252 LLLEQVHYD 260
L L+++ Y+
Sbjct: 240 LYLKEIRYE 248
>gi|358338575|dbj|GAA57020.1| tRNA pseudouridine synthase 3, partial [Clonorchis sinensis]
Length = 368
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 112/284 (39%), Gaps = 75/284 (26%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A FAY G Y GL + N G+ T+ +M+A KA + ED +
Sbjct: 6 VAFQFAYLGWNYSGLAIQ---------NFGV-TVMQKLMDAFEKARLI-EDRISC----D 50
Query: 61 FQRAARTDKGVSALKQIVSLKLPE---------EANKEAINEH----------------- 94
F RTDKGVSAL Q+VSL + + + AINE
Sbjct: 51 FTVCGRTDKGVSALGQVVSLVVRSALVSGLGIVDDSGTAINERPSIPDVELDYVFLLNKL 110
Query: 95 LPEQIRILSIKRVTKGFNSKNN-----------CNARTYSYTCPTYAFATPQDTKDDFRL 143
LP IRIL+ V F+++ + C R+Y+Y P
Sbjct: 111 LPPDIRILAWSPVGADFSARYSVFFFYNCLRFTCCQRSYTYFIPCSGL------------ 158
Query: 144 TPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDC------EQPFVKDGLE 197
+ K+ EGTH+F NF S L+ ++ D + + D
Sbjct: 159 ---DITMMAEAAKRLEGTHDFRNFCSIN--LEHELPVFVRRIDSVLVRLEDTSVMCDPTT 213
Query: 198 LITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQ 241
+ + I G F+ HQ+R +V + + I RG+ S LI+ +++
Sbjct: 214 MCEISITGSGFLYHQVRCIVALLVTIGRGYESPSLIDDLLDIEK 257
>gi|317126894|ref|YP_004093176.1| tRNA pseudouridine synthase A [Bacillus cellulosilyticus DSM 2522]
gi|315471842|gb|ADU28445.1| tRNA pseudouridine synthase A [Bacillus cellulosilyticus DSM 2522]
Length = 260
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 119/271 (43%), Gaps = 45/271 (16%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ Y G Y G Q + KTI+ ++ +AL A DS+N
Sbjct: 7 IVTYDGTKYSGYQVQV----------DKKTIQAELEKAL--AKIHKADSWNVVS------ 48
Query: 64 AARTDKGVSALKQIV----SLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
+ RTD GV +L Q + SL +PEE +A N LP+ I++ ++ V F+++ +
Sbjct: 49 SGRTDTGVHSLGQTIHFDTSLSIPEERWPQAFNRLLPDDIQVRDLQYVHHDFHARFDSVG 108
Query: 120 RTYSYTCPTYAFATPQDTKDDFRLT-----PDQFNF---LQALLKQYEGTHNFHNFTSKR 171
+ Y Y T KD F+ P ++ L+A + EGTH+F +F+S R
Sbjct: 109 KKYVYKVNT------AREKDIFKRNFVYHHPYVLSYEKMLEAAM-HLEGTHDFTSFSSPR 161
Query: 172 KPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKD 231
+ R I + + E K+G E T G F+ +R + G + + +G +
Sbjct: 162 TDVIDKV-RTIYAIELE----KNGDEW-TFTYIGNGFLYQMVRVLTGTLLHVGKGKIRPE 215
Query: 232 LIEKTF-GLDQ-FDLPMAPGLGLLLEQVHYD 260
I + F G D+ P PG GL L V+YD
Sbjct: 216 EIPEIFEGKDRSLAGPSIPGTGLYLTNVYYD 246
>gi|223935594|ref|ZP_03627510.1| tRNA pseudouridine synthase A [bacterium Ellin514]
gi|223895602|gb|EEF62047.1| tRNA pseudouridine synthase A [bacterium Ellin514]
Length = 270
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 101/217 (46%), Gaps = 21/217 (9%)
Query: 56 PQNIQFQRAARTDKGVSALKQIVSLKLPE-------EANKEAINEHLPEQIRILSIKRVT 108
P + ++RTD GV A+ + +++P+ E AIN HLPE IR++S ++V
Sbjct: 42 PSVGRIHSSSRTDTGVHAIGMVAHMEIPKAEFRMTSEKLALAINAHLPEDIRVMSAQKVA 101
Query: 109 KGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNF--LQALLKQYEGTHNFHN 166
F+++ + + Y Y P + +++ P + + +++ K + G H+F +
Sbjct: 102 ADFHARFDAAGKQYRYFVWNQTAMNPLLREQAWQV-PKELDLKAMRSAAKLFPGKHDFRS 160
Query: 167 FTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARG 226
F + R S R + D +K L+T I+G F+ R +VG + + +G
Sbjct: 161 FAASRNYEVESTVRTLARCD-----IKKSGSLLTFIIEGDGFLYKMCRGIVGTLVQVGQG 215
Query: 227 FTSKDLIEKTFGLDQFDLPM----APGLGLLLEQVHY 259
+ I+K L+ D + AP GL+L +V Y
Sbjct: 216 KIAAADIKKI--LETRDRRVAGMTAPAHGLVLWKVFY 250
>gi|418977407|ref|ZP_13525226.1| tRNA pseudouridine synthase A [Streptococcus mitis SK575]
gi|383349924|gb|EID27838.1| tRNA pseudouridine synthase A [Streptococcus mitis SK575]
Length = 249
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 106/249 (42%), Gaps = 25/249 (10%)
Query: 22 FLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLK 81
F F R ++++ +I + L + N Q I A RTD GV AL Q++
Sbjct: 15 FAGFQRQPHARSVQEEIEKTLTR--------LNKGQGITVHGAGRTDSGVHALGQVIHFD 66
Query: 82 LPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDT 137
LP + N+E A++ E I ++SI+ V+ F+ + +++TY + P+D
Sbjct: 67 LPYQMNEEKLRFALDTQSSEDIDVISIELVSDDFHCRYAKHSKTYEFIVDR---GRPKDP 123
Query: 138 KDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVK 193
T P +Q +K+ EGTH+F FT+ ++ R I V
Sbjct: 124 MRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKV-RTITEASLR---VD 179
Query: 194 DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD--QFDLPMAPGLG 251
+ + +T G F+ QIR MVG + I + I+ Q P A G
Sbjct: 180 ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPNG 239
Query: 252 LLLEQVHYD 260
L L+++ Y+
Sbjct: 240 LYLKEIRYE 248
>gi|421238940|ref|ZP_15695504.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2071247]
gi|421245450|ref|ZP_15701948.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2081685]
gi|395600583|gb|EJG60738.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2071247]
gi|395607977|gb|EJG68073.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2081685]
Length = 249
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 105/249 (42%), Gaps = 25/249 (10%)
Query: 22 FLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLK 81
F F R ++++ +I + L + N Q I A RTD GV AL Q++
Sbjct: 15 FAGFQRQSHARSVQEEIEKTLTR--------LNKGQTITVHGAGRTDSGVHALGQVIHFD 66
Query: 82 LPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDT 137
LP + ++E A++ PE I ++SI+ V F+ + +++TY + P++
Sbjct: 67 LPYQMDEEKLRFALDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFILDR---GRPKNP 123
Query: 138 KDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVK 193
T P +Q +K+ EGTH+F FT+ S + + V
Sbjct: 124 MRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTAS----GTSVEDKVRTITEASLIVD 179
Query: 194 DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDL--PMAPGLG 251
+ + +T G F+ QIR MVG + I + I+ L P A G
Sbjct: 180 ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRKLAGPTAAPNG 239
Query: 252 LLLEQVHYD 260
L L+++ Y+
Sbjct: 240 LYLKEIRYE 248
>gi|340356749|ref|ZP_08679390.1| tRNA pseudouridine synthase A [Sporosarcina newyorkensis 2681]
gi|339620087|gb|EGQ24658.1| tRNA pseudouridine synthase A [Sporosarcina newyorkensis 2681]
Length = 245
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 115/269 (42%), Gaps = 37/269 (13%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
M AY G + G QS+ M+T++ +I +AL K + ++
Sbjct: 4 MKATIAYDGTNFAGYQSQ----------PNMRTVQSEIDKALVK--------LHKDSSVY 45
Query: 61 FQRAARTDKGVSALKQIVSLKLP---EEANKEAINEHLPEQIRILSIKRVTKGFNSKNNC 117
+ RTD GV AL Q++ P + K A+N LP+ +R++ ++ F+++
Sbjct: 46 SVASGRTDAGVHALGQVIHFDTPLDLADRWKMALNVLLPKDVRVIGVEEAAVDFHARYGA 105
Query: 118 NARTYSYTCPTYAFATPQDTKDDF---RLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
+TY Y +P + R PD ++ + GTH+F +F S K
Sbjct: 106 TGKTYVYRWSYSEVQSPFERNFAVHLGRWNPD-VERMREGAQHLIGTHDFTSFCSA-KTA 163
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+ R I E + G L+ L+++G F+ + +R + GV +A+ G+ + +
Sbjct: 164 TTNKVRTIRKLSLE----RQGDHLV-LEVEGDGFLYNMVRTIAGVLLAVGIGWDEPEDVR 218
Query: 235 KTFGLDQFDLPM----APGLGLLLEQVHY 259
K D D M AP GL L +V Y
Sbjct: 219 KI--RDAKDRKMAGKTAPAHGLYLMEVTY 245
>gi|227431309|ref|ZP_03913362.1| pseudouridylate synthase [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
gi|227352902|gb|EEJ43075.1| pseudouridylate synthase [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
Length = 255
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 119/267 (44%), Gaps = 28/267 (10%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRN--QGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
+ AY G +FG Q + +N + ++T++G++ + + K + N I+
Sbjct: 7 VIAYDGAEFFGFQLQ-------TKNGVESVRTVQGELNKVINKM------AKNPSPQIKV 53
Query: 62 QRAARTDKGVSALKQIVSLKLP----EEANKEAINEHLPEQIRILSIKRVTKGFNSKNNC 117
A+RTD GV A Q++ LP E ++ +N LP + + ++ V+ F+++ N
Sbjct: 54 VGASRTDTGVHAFGQVIHFDLPFNIDPEGVRKGMNTLLPFDVVVNHVEHVSDDFHARFNT 113
Query: 118 NARTYSYTCPTYAFATPQDTK--DDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+++ Y Y T + P K F D N ++A L G H+F +F +
Sbjct: 114 HSKRYIYRVSTTDYKDPFKRKYTGHFHWKLD-INRIKAALPDLLGEHDFASFAASGNET- 171
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
+ R I D ++ K I +G +F+ +QIR MVGV + I G I +
Sbjct: 172 ATTIRLITRADVDE---KPEEHEIVFTFEGNAFLYNQIRIMVGVLLEIGTGKRPVHDIVR 228
Query: 236 TFGLDQFDLP--MAPGLGLLLEQVHYD 260
+ + AP GL L+++ Y+
Sbjct: 229 LIEVKDREQARYTAPASGLYLDEIDYN 255
>gi|429766946|ref|ZP_19299177.1| tRNA pseudouridine synthase A, partial [Clostridium celatum DSM
1785]
gi|429182374|gb|EKY23480.1| tRNA pseudouridine synthase A, partial [Clostridium celatum DSM
1785]
Length = 262
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 115/268 (42%), Gaps = 31/268 (11%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ M Y G Y G Q + + + Q + TI+G I L K T + IQ
Sbjct: 17 IRMTIQYDGSRYKGWQKQNI------KGQSVSTIQGKIENVLSKM---------TGEEIQ 61
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEAN----KEAINEHLPEQIRILSIKRVTKGFNSKNN 116
RTD GV A K + K + +NE LP+ I + S++ + F+S+ N
Sbjct: 62 VIGCGRTDTGVHADKYTANFKTNSNKTLSDMSKYLNEFLPDDIVVTSLREASDRFHSRLN 121
Query: 117 CNARTYSYTCPTYAFATPQDTKDDFRLTPD-QFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
++TY YT FA K + + ++ K GTH+F +F+ + +
Sbjct: 122 VISKTYVYTIDNNKFANVFLKKYAYHVEGKLDIEKMKEASKLLIGTHDFRSFSGVKAKHN 181
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARG----FTSKD 231
S R I + + + +I ++ G F+L+ +R + G + +A+G K+
Sbjct: 182 KSTIRTINYIN-----IYEDNNIIKIEYNGNGFLLNMVRILSGTLIKVAKGEIDIIDIKN 236
Query: 232 LIEKTFGLDQFDLPMAPGLGLLLEQVHY 259
L+E D + AP GL +++VHY
Sbjct: 237 LLEAKSRSDIAE--KAPAKGLCMKEVHY 262
>gi|380027544|ref|XP_003697482.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Apis florea]
Length = 400
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 114/298 (38%), Gaps = 58/298 (19%)
Query: 33 TIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLPEEANKE--- 89
TIE + EAL K+ + + + + R RTDKGVS+ Q++SL + + N E
Sbjct: 97 TIEEHLFEALIKSCCIE-----SRETSNYHRCGRTDKGVSSFSQVISLDIRSKLNPEDQY 151
Query: 90 ----------AINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKD 139
+N LP IR ++ V F+++ NC RTY Y P
Sbjct: 152 KLEDELPYCKMLNRLLPSNIRCIAWCPVPNDFSARFNCKFRTYKYFFPRGNL-------- 203
Query: 140 DFRLTPDQFNFLQALLKQYEGTHNFHNFTSK----------RKPLDPSCSRYIMSFDCEQ 189
+ + +K G H+F N RK ++ Y Q
Sbjct: 204 -------NIDAMDKAVKYIIGEHDFRNICKMDVANGVTNYIRKVINAEVCMY------RQ 250
Query: 190 PFVK-DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAP 248
F G ++ L I Q+F+ HQIR ++GV I G +++ K LD + P P
Sbjct: 251 DFRNISGYDMCQLIITSQAFLWHQIRCLMGVLFLIGEGKEEAEIMLKL--LDIENCPKKP 308
Query: 249 GLGLL------LEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
L L YD +D + ++ + D +N R I L++ E
Sbjct: 309 QYNLAHEIPLNLWYCEYDAKEWYIHKDELFNTIKLLQKDWTLNTVRSVMIENMLLELE 366
>gi|448498802|ref|ZP_21611014.1| tRNA pseudouridine synthase A [Halorubrum coriense DSM 10284]
gi|445698168|gb|ELZ50218.1| tRNA pseudouridine synthase A [Halorubrum coriense DSM 10284]
Length = 313
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 78/191 (40%), Gaps = 45/191 (23%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ- 60
A AY G Y G Q R T+ ++ AL G V DS + P +
Sbjct: 14 AFRVAYDGRAYAGFQ----------RQPHAHTVADALLGALADHGLV--DSGDGPTHATP 61
Query: 61 --FQRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ A RTD GVSA+ Q V+ + P A N HLP +R + V GF++ ++
Sbjct: 62 PGYAAAGRTDAGVSAVSQTVAFEAPTWLTPRAFNGHLPGSVRAWAAADVASGFHATHDAV 121
Query: 119 ARTYSYTCPTYA--------------------FATPQDTKDDFRLTPDQFNFLQALLKQY 158
RTY Y YA P++ DD R L+A L ++
Sbjct: 122 RRTYRYHL--YAPDVREDDAPAAGADAATDAARRDPENAIDDER--------LRAALARF 171
Query: 159 EGTHNFHNFTS 169
+G H+FHN T+
Sbjct: 172 DGEHDFHNLTT 182
>gi|418115125|ref|ZP_12752111.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 5787-06]
gi|419495783|ref|ZP_14035500.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47461]
gi|421207042|ref|ZP_15664094.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2090008]
gi|421230217|ref|ZP_15686881.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2061376]
gi|421292485|ref|ZP_15743219.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA56348]
gi|421302931|ref|ZP_15753595.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA17484]
gi|421312419|ref|ZP_15763021.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA58981]
gi|353785209|gb|EHD65628.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 5787-06]
gi|379593869|gb|EHZ58680.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47461]
gi|395574378|gb|EJG34956.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2090008]
gi|395593743|gb|EJG53985.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2061376]
gi|395891792|gb|EJH02786.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA56348]
gi|395901553|gb|EJH12489.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA17484]
gi|395909273|gb|EJH20149.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA58981]
Length = 249
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 105/249 (42%), Gaps = 25/249 (10%)
Query: 22 FLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLK 81
F F R ++++ +I + L + N Q I A RTD GV AL Q++
Sbjct: 15 FAGFQRQSHARSVQEEIEKTLTR--------LNKGQAITVHGAGRTDSGVHALGQVIHFD 66
Query: 82 LPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDT 137
LP + ++E A++ PE I ++SI+ V F+ + +++TY + P++
Sbjct: 67 LPYQIDEEKLRFALDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDR---GRPKNP 123
Query: 138 KDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVK 193
T P +Q +K+ EGTH+F FT+ S + + V
Sbjct: 124 MRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTAS----GTSVEDKVRTITEASLIVD 179
Query: 194 DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD--QFDLPMAPGLG 251
+ + +T G F+ QIR MVG + I + I+ Q P A G
Sbjct: 180 ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPNG 239
Query: 252 LLLEQVHYD 260
L L+++ Y+
Sbjct: 240 LYLKEIRYE 248
>gi|381191091|ref|ZP_09898603.1| tRNA pseudouridine synthase A [Thermus sp. RL]
gi|386359864|ref|YP_006058109.1| pseudouridylate synthase I [Thermus thermophilus JL-18]
gi|380451180|gb|EIA38792.1| tRNA pseudouridine synthase A [Thermus sp. RL]
gi|383508891|gb|AFH38323.1| pseudouridylate synthase I [Thermus thermophilus JL-18]
Length = 253
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 111/266 (41%), Gaps = 30/266 (11%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ ++ Y G + GLQ + +G++T++G++ AL G + P+ +
Sbjct: 4 LLLLCEYDGTLFAGLQRQ---------GRGLRTVQGELERALPGIGAL-------PKAVA 47
Query: 61 FQRAARTDKGVSALKQI----VSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
A RTD GV AL V +P E EA+N LPE +++++ + V F+++ +
Sbjct: 48 ---AGRTDAGVHALAMPFHVDVESAIPVEKVPEALNRLLPEDLKVVAAREVAPDFHARKD 104
Query: 117 CNARTYSYTCPTYAFATPQDTKDDFRL-TPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
R Y Y +P + P ++ L G HNF F R+
Sbjct: 105 ALWRAYRYRILVRPHPSPLLRHRALWVRRPLDLEAMEKALSLLPGRHNFLGFA--REETR 162
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
P R ++ + + GLE + L +G SF+ Q+R MVG + + G + +E
Sbjct: 163 PG-ERELLEAQLQVTEGEAGLE-VRLYFRGTSFLRGQVRGMVGTLLEVGLGKRPPESLEA 220
Query: 236 TFGLDQFDL--PMAPGLGLLLEQVHY 259
L P AP GL + Y
Sbjct: 221 ILKTADRRLAGPTAPAHGLYFVEAAY 246
>gi|338733687|ref|YP_004672160.1| tRNA pseudouridine synthase A 2 [Simkania negevensis Z]
gi|336483070|emb|CCB89669.1| tRNA pseudouridine synthase A 2 [Simkania negevensis Z]
Length = 247
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 110/271 (40%), Gaps = 41/271 (15%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ ++ +Y G Y G Q+ N G+ +IEG + E L K Q +Q
Sbjct: 5 IKLILSYDGSAYLGWQAS---------NVGV-SIEGTLKEVLEKI---------LQQEVQ 45
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNN 116
Q A+RTD GV A Q+V+ L + N E ++N+ LP+ IR+ ++ F+
Sbjct: 46 LQAASRTDAGVHAEAQVVNFFLEKPRNLEHLHKSLNQLLPKDIRVAIVEEAPDDFHPTLK 105
Query: 117 CNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNF------LQALLKQYEGTHNFHNFTSK 170
+ Y Y P D RL + F ++ K + G H+F F +
Sbjct: 106 SKGKEYHYRLTRSHVQLPFD-----RLFAWHYPFSLDLAKMETATKFFIGKHDFQAFGNA 160
Query: 171 RKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSK 230
P R + D + E + +I G +F+ +R +VG + I G S
Sbjct: 161 ADPKPKDTIRTLYRLD-----IISSEEELRFEIHGNNFLYKMVRNLVGTLVYIGAGKLSL 215
Query: 231 DLIEKTFGLDQFDLP--MAPGLGLLLEQVHY 259
+ EK L AP GLLL++V Y
Sbjct: 216 EEAEKLIASKDRTLAGMTAPAHGLLLKKVFY 246
>gi|149021302|ref|ZP_01835548.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP23-BS72]
gi|168491513|ref|ZP_02715656.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CDC0288-04]
gi|225861429|ref|YP_002742938.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae
Taiwan19F-14]
gi|298229625|ref|ZP_06963306.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae str. Canada
MDR_19F]
gi|298254115|ref|ZP_06977701.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae str. Canada
MDR_19A]
gi|298503335|ref|YP_003725275.1| tRNA-pseudouridine synthase I [Streptococcus pneumoniae
TCH8431/19A]
gi|387788652|ref|YP_006253720.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae ST556]
gi|417313075|ref|ZP_12099787.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA04375]
gi|417687042|ref|ZP_12336316.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA41301]
gi|418083400|ref|ZP_12720597.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA44288]
gi|418085589|ref|ZP_12722768.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47281]
gi|418094386|ref|ZP_12731513.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA49138]
gi|418101056|ref|ZP_12738139.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 7286-06]
gi|418103298|ref|ZP_12740370.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae NP070]
gi|418119039|ref|ZP_12755996.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA18523]
gi|418142110|ref|ZP_12778923.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA13455]
gi|418146852|ref|ZP_12783630.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA13637]
gi|418151101|ref|ZP_12787847.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA14798]
gi|418153332|ref|ZP_12790070.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA16121]
gi|418160299|ref|ZP_12796998.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA17227]
gi|418164893|ref|ZP_12801561.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA17371]
gi|418171732|ref|ZP_12808356.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA19451]
gi|418194177|ref|ZP_12830666.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47439]
gi|418196261|ref|ZP_12832737.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47688]
gi|418198424|ref|ZP_12834882.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47778]
gi|418223797|ref|ZP_12850437.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 5185-06]
gi|418228103|ref|ZP_12854720.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 3063-00]
gi|419425543|ref|ZP_13965739.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 7533-05]
gi|419427656|ref|ZP_13967837.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 5652-06]
gi|419429796|ref|ZP_13969960.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA11856]
gi|419436389|ref|ZP_13976477.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 8190-05]
gi|419438635|ref|ZP_13978703.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA13499]
gi|419445108|ref|ZP_13985123.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA19923]
gi|419447254|ref|ZP_13987259.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 7879-04]
gi|419449385|ref|ZP_13989381.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 4075-00]
gi|419451016|ref|ZP_13991002.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae EU-NP02]
gi|419475940|ref|ZP_14015776.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA14688]
gi|419487083|ref|ZP_14026845.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA44128]
gi|419502249|ref|ZP_14041933.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47628]
gi|419519311|ref|ZP_14058917.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA08825]
gi|419521526|ref|ZP_14061121.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA05245]
gi|419527934|ref|ZP_14067477.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA17719]
gi|421209377|ref|ZP_15666390.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2070005]
gi|421218232|ref|ZP_15675126.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2070335]
gi|421225439|ref|ZP_15682177.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2070768]
gi|421241073|ref|ZP_15697618.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2080913]
gi|421287869|ref|ZP_15738632.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA58771]
gi|421290164|ref|ZP_15740914.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA54354]
gi|421305556|ref|ZP_15756210.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA62331]
gi|254764872|sp|C1CSL6.1|TRUA_STRZT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|147930403|gb|EDK81387.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP23-BS72]
gi|183574268|gb|EDT94796.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CDC0288-04]
gi|225728219|gb|ACO24070.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae
Taiwan19F-14]
gi|298238930|gb|ADI70061.1| tRNA-pseudouridine synthase I [Streptococcus pneumoniae
TCH8431/19A]
gi|327389783|gb|EGE88128.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA04375]
gi|332073932|gb|EGI84410.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA41301]
gi|353754620|gb|EHD35232.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA44288]
gi|353756298|gb|EHD36899.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47281]
gi|353764882|gb|EHD45430.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA49138]
gi|353770556|gb|EHD51068.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 7286-06]
gi|353774599|gb|EHD55086.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae NP070]
gi|353790991|gb|EHD71372.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA18523]
gi|353806361|gb|EHD86635.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA13455]
gi|353812427|gb|EHD92662.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA13637]
gi|353814311|gb|EHD94537.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA14798]
gi|353816883|gb|EHD97091.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA16121]
gi|353822032|gb|EHE02208.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA17227]
gi|353828725|gb|EHE08861.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA17371]
gi|353835469|gb|EHE15563.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA19451]
gi|353857755|gb|EHE37717.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47439]
gi|353860272|gb|EHE40217.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47688]
gi|353861534|gb|EHE41469.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47778]
gi|353878595|gb|EHE58425.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 5185-06]
gi|353880498|gb|EHE60313.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 3063-00]
gi|379138394|gb|AFC95185.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae ST556]
gi|379537042|gb|EHZ02227.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA13499]
gi|379538826|gb|EHZ04006.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA05245]
gi|379549974|gb|EHZ15076.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA11856]
gi|379558722|gb|EHZ23754.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA14688]
gi|379566087|gb|EHZ31078.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA17719]
gi|379572801|gb|EHZ37758.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA19923]
gi|379585452|gb|EHZ50308.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA44128]
gi|379600462|gb|EHZ65243.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47628]
gi|379613210|gb|EHZ77923.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 8190-05]
gi|379614794|gb|EHZ79504.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 7879-04]
gi|379617849|gb|EHZ82529.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 5652-06]
gi|379619004|gb|EHZ83678.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 7533-05]
gi|379622003|gb|EHZ86639.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 4075-00]
gi|379622721|gb|EHZ87355.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae EU-NP02]
gi|379641148|gb|EIA05686.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA08825]
gi|395573473|gb|EJG34063.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2070005]
gi|395583001|gb|EJG43450.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2070335]
gi|395588926|gb|EJG49248.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2070768]
gi|395607451|gb|EJG67548.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2080913]
gi|395886432|gb|EJG97448.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA58771]
gi|395887849|gb|EJG98863.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA54354]
gi|395904514|gb|EJH15428.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA62331]
Length = 249
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 105/249 (42%), Gaps = 25/249 (10%)
Query: 22 FLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLK 81
F F R ++++ +I + L + N Q I A RTD GV AL Q++
Sbjct: 15 FAGFQRQPHARSVQEEIEKTLTR--------LNKGQTITVHGAGRTDSGVHALGQVIHFD 66
Query: 82 LPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDT 137
LP + ++E A++ PE I ++SI+ V F+ + +++TY + P++
Sbjct: 67 LPYQMDEEKLRFALDTQSPEDIDVISIELVAADFHCRYAKHSKTYEFIVDR---GRPKNP 123
Query: 138 KDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVK 193
T P +Q +K+ EGTH+F FT+ S + + V
Sbjct: 124 MRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTAS----GTSVEDKVRTITEASLIVD 179
Query: 194 DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD--QFDLPMAPGLG 251
+ + +T G F+ QIR MVG + I + I+ Q P A G
Sbjct: 180 ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPNG 239
Query: 252 LLLEQVHYD 260
L L+++ Y+
Sbjct: 240 LYLKEIRYE 248
>gi|421234500|ref|ZP_15691118.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2061617]
gi|421249828|ref|ZP_15706285.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2082239]
gi|395600354|gb|EJG60511.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2061617]
gi|395613522|gb|EJG73550.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2082239]
Length = 249
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 105/249 (42%), Gaps = 25/249 (10%)
Query: 22 FLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLK 81
F F R ++++ +I + L + N Q I A RTD GV AL Q++
Sbjct: 15 FAGFQRQPHARSVQEEIEKTLTR--------LNKGQTITVHGAGRTDSGVHALGQVIHFD 66
Query: 82 LPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDT 137
LP + ++E A++ PE I ++SI+ V F+ + +++TY + P++
Sbjct: 67 LPYQMDEEKLRFALDTQSPEDIDVISIELVAADFHCRYAKHSKTYEFIVDR---GRPKNP 123
Query: 138 KDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVK 193
T P +Q +K+ EGTH+F FT+ S + + V
Sbjct: 124 MRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTAS----GTSVEDKVRTITEASLIVD 179
Query: 194 DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD--QFDLPMAPGLG 251
+ + +T G F+ QIR MVG + I + I+ Q P A G
Sbjct: 180 ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNCMPVEQIDLILEKKDRQLAGPTAAPNG 239
Query: 252 LLLEQVHYD 260
L L+++ Y+
Sbjct: 240 LYLKEIRYE 248
>gi|297846396|ref|XP_002891079.1| hypothetical protein ARALYDRAFT_473569 [Arabidopsis lyrata subsp.
lyrata]
gi|297336921|gb|EFH67338.1| hypothetical protein ARALYDRAFT_473569 [Arabidopsis lyrata subsp.
lyrata]
Length = 443
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 115/274 (41%), Gaps = 59/274 (21%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ Y G ++G ++ Q +IE ++ +AL + + D ++
Sbjct: 92 VALKIMYFGKRFYGFSAE---------AQMEPSIESEVFKALERTRLLVGDK----KDSC 138
Query: 61 FQRAARTDKGVSALKQIVSLKL----------------------PEEANKEAINEHLPEQ 98
+ R RTDKGVS+ Q+++L L PE +N LP+
Sbjct: 139 YSRCGRTDKGVSSTGQVIALFLRSRLKSPPGDSKAQVNGKTGERPEYDYVRVLNRALPDD 198
Query: 99 IRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQY 158
IR++ F+++ +C AR Y Y F Q+ + + K++
Sbjct: 199 IRVIGWSPAPVDFHARFSCYAREYKY------FFWRQNL---------NLSAMDIAGKKF 243
Query: 159 EGTHNFHNFTSKRKPLDPSC-SRYIMSFD---CEQPFVKDGLELITLKIKGQSFMLHQIR 214
G H+F NF K + C +R + F+ C+ +G +L T ++G +F+ HQIR
Sbjct: 244 IGEHDFRNFC-KMDVANVHCYTRRVTFFEVSPCQNSH--EGDQLCTFTMRGSAFLWHQIR 300
Query: 215 KMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAP 248
MV V I +G S D+I+ LD P P
Sbjct: 301 CMVAVLFMIGQGVESVDVIDTL--LDTKKTPRKP 332
>gi|336379040|gb|EGO20196.1| hypothetical protein SERLADRAFT_363593 [Serpula lacrymans var.
lacrymans S7.9]
Length = 444
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 85/357 (23%), Positives = 141/357 (39%), Gaps = 81/357 (22%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ F YSG Y GL + + T+E + A K V D
Sbjct: 60 IAVKFCYSGWEYNGLAFQN-------GPTPLPTVEEVLFNAFAKTRLVDPD--KGLDGCG 110
Query: 61 FQRAARTDKGVSALKQIVSL----KLPEEANKEA-----------INEHLPEQIRILSIK 105
++R RTD+GVSA Q+VSL L E K+A +N LP IR+L+
Sbjct: 111 WERCGRTDRGVSAAGQVVSLWVRSALDENRLKDAETRSELRYVSILNRVLPPTIRVLAWS 170
Query: 106 RVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFH 165
++ F+++ NC +R Y Y F +PQ+ +Q + G H+F
Sbjct: 171 PISSTFSARFNCQSRHYKY------FFSPQEL---------DLGLMQQAADRLVGEHDFR 215
Query: 166 NFTSKRKPLDPSCSRYIMSFDCEQPFVKDGL---ELITLKIKGQSFMLHQIRKMVGVAMA 222
N LDP ++ I +F+ K L ++G +F+ HQ+R ++ +
Sbjct: 216 NLCK----LDP--AKQITNFNRRVLLAKISPISDHLCVFDLRGTAFLYHQVRHIMAILFL 269
Query: 223 IARGFTSKDLIEKTFG----------LDQFDLP---------MAPGLGLLLEQVHYDLYN 263
+ G ++ LD L MA GL L+L Y +
Sbjct: 270 VGTGLEHPSIVSTLLNVGKETNSPSELDNSPLEIVDRKPEYQMADGLPLMLWDCAYSDSD 329
Query: 264 QKYGQD-GMHESLHFHEVDKEVNE-------FRHKFI----LPYLVKTEITEKPMLA 308
++ D E+ HF +++ F H + +P L+K++ E+P+L+
Sbjct: 330 VQWQTDIDTGENAHFLSAAAQLHSHPPQRFPFSHTGLALSTIPVLLKSK--ERPVLS 384
>gi|307706977|ref|ZP_07643775.1| tRNA pseudouridine synthase A [Streptococcus mitis SK321]
gi|307617638|gb|EFN96807.1| tRNA pseudouridine synthase A [Streptococcus mitis SK321]
Length = 249
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 106/249 (42%), Gaps = 25/249 (10%)
Query: 22 FLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLK 81
F F R ++++ +I + L + N Q I A RTD GV AL Q++
Sbjct: 15 FAGFQRQPHARSVQEEIEKTLTR--------LNKGQAITVHGAGRTDSGVHALGQVIHFD 66
Query: 82 LPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDT 137
LP + ++E A++ PE I ++SI+ V F+ + +++TY + P++
Sbjct: 67 LPYQMDEEKLRFALDTQSPEDIDVVSIELVADDFHCRYAKHSKTYEFIVDR---GRPKNP 123
Query: 138 KDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVK 193
T P +Q +K+ EGTH+F FT+ ++ R I V
Sbjct: 124 MRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKV-RTITEASLR---VD 179
Query: 194 DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD--QFDLPMAPGLG 251
+ + +T G F+ QIR MVG + I + IE Q P A G
Sbjct: 180 ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIELILEKKDRQLAGPTAAPNG 239
Query: 252 LLLEQVHYD 260
L L+++ Y+
Sbjct: 240 LYLKEIRYE 248
>gi|383320001|ref|YP_005380842.1| tRNA pseudouridylate synthase I [Methanocella conradii HZ254]
gi|379321371|gb|AFD00324.1| tRNA pseudouridylate synthase I [Methanocella conradii HZ254]
Length = 269
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 113/263 (42%), Gaps = 45/263 (17%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A+ AY G + G Q++ G +T+EG++ + L + G + E + + F
Sbjct: 6 ALKLAYIGTDFSGSQAQ----------PGKRTVEGELKKGLIEKGIIDERT-----RVSF 50
Query: 62 QRAARTDKGVSALKQIVSLKLPEE--ANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
+ RTD GV AL Q+VS K +E IN +P+ + + + V F+ + + +
Sbjct: 51 --SGRTDAGVHALGQVVSFKALDERLVEPRIINSVMPKDLWVYASASVPDDFDPRRDATS 108
Query: 120 RTYSYTCPTYAFATPQDTKDDFRLTPDQF-NFLQALLKQYEGTHNFHNFTSKRKPLDPSC 178
RTY Y YA PD + K + GTH+F NF+S +P
Sbjct: 109 RTYRYVL--YA--------------PDVVERRIVECSKLFIGTHDFTNFSSVEPGKNP-- 150
Query: 179 SRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFG 238
R I + K G +L + ++ SF+ + +RKMV + IE+
Sbjct: 151 VRTIKNISV----TKRG-DLYIIDVEADSFLWNMVRKMVTGLRLVGSNKRPARWIEQMLR 205
Query: 239 LDQF--DLPMAPGLGLLLEQVHY 259
D++ +P A GL L +V Y
Sbjct: 206 PDEYREGIPPALAAGLYLVKVDY 228
>gi|381335836|ref|YP_005173611.1| tRNA pseudouridine synthase A [Leuconostoc mesenteroides subsp.
mesenteroides J18]
gi|356643802|gb|AET29645.1| tRNA pseudouridine synthase A [Leuconostoc mesenteroides subsp.
mesenteroides J18]
Length = 255
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 118/267 (44%), Gaps = 28/267 (10%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRN--QGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
+ AY G +FG Q + +N + ++T++G++ + + K + N I+
Sbjct: 7 VIAYDGAEFFGFQLQ-------TKNGVESVRTVQGELNKVINKM------AKNPSPQIKV 53
Query: 62 QRAARTDKGVSALKQIVSLKLP----EEANKEAINEHLPEQIRILSIKRVTKGFNSKNNC 117
A+RTD GV A Q+V LP E ++ +N LP + + ++ V+ F+++ N
Sbjct: 54 VGASRTDTGVHAFGQVVHFDLPFNIDPEGVRKGMNTLLPFDVVVNHVEHVSDDFHARFNT 113
Query: 118 NARTYSYTCPTYAFATPQDTK--DDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+++ Y Y T + P K F D N ++A L G H+F +F +
Sbjct: 114 HSKRYIYRVSTTDYKDPFKRKYTGHFHWKLD-INRIKAALPDLLGEHDFASFAASGNET- 171
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
+ R I D ++ K I +G +F+ +QIR MVGV + I G I +
Sbjct: 172 ATTIRLITRADVDE---KPEEHEIVFTFEGNAFLYNQIRIMVGVLLEIGTGKRPVHDIVR 228
Query: 236 TFGLDQFDLP--MAPGLGLLLEQVHYD 260
+ + AP GL L+ + Y+
Sbjct: 229 LIEVKDREQARYTAPASGLYLDDIDYN 255
>gi|303288620|ref|XP_003063598.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454666|gb|EEH51971.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 261
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 117/270 (43%), Gaps = 30/270 (11%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A+ AY G Y G Q + + KT++G++ +AL K ED +
Sbjct: 4 ALTLAYDGENYLGFQYQ---------PRDAKTVQGEVEKALTK--ITGEDR----DFLGI 48
Query: 62 QRAARTDKGVSALKQIVSL--KLPEE---ANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
Q + RTD GV A Q++ + P E + ++N LP +R++ R F+++ +
Sbjct: 49 QASGRTDAGVHARGQVLHFYARRPIEDLARFQRSMNGVLPRDVRVMKAIRPHPAFHARFH 108
Query: 117 CNARTYSYTCPTYAFATPQDTKDDFRL--TPDQFNFLQALLKQYEGTHNFHNFTSK--RK 172
+TY Y T P + + P L+ + + GT +F F++K K
Sbjct: 109 AVRKTYHYYLDTRLTMDPFLRRHALHVGWNPPDVEKLRRGAECFVGTRDFSAFSNKPRDK 168
Query: 173 PLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVG--VAMAIARGFTSK 230
L R I FD + DGL + L+++G FM Q+R MVG + A ++
Sbjct: 169 TLVRDPVRTIYRFDVNE-LKGDGL--LRLEVEGNGFMYKQVRNMVGAMITAATSKKMQPA 225
Query: 231 DLIEKTFGLDQFDLPM-APGLGLLLEQVHY 259
D+ G D+ PM AP GL L V Y
Sbjct: 226 DIAAMLEGKDRGVAPMGAPAHGLFLHDVVY 255
>gi|126697674|ref|YP_001086571.1| transfer RNA pseudouridine synthase A 1 [Clostridium difficile 630]
gi|254973765|ref|ZP_05270237.1| tRNA pseudouridine synthase 1 [Clostridium difficile QCD-66c26]
gi|255091155|ref|ZP_05320633.1| tRNA pseudouridine synthase 1 [Clostridium difficile CIP 107932]
gi|255099266|ref|ZP_05328243.1| tRNA pseudouridine synthase 1 [Clostridium difficile QCD-63q42]
gi|255305049|ref|ZP_05349221.1| tRNA pseudouridine synthase 1 [Clostridium difficile ATCC 43255]
gi|255312809|ref|ZP_05354392.1| tRNA pseudouridine synthase 1 [Clostridium difficile QCD-76w55]
gi|255515568|ref|ZP_05383244.1| tRNA pseudouridine synthase 1 [Clostridium difficile QCD-97b34]
gi|255648663|ref|ZP_05395565.1| tRNA pseudouridine synthase 1 [Clostridium difficile QCD-37x79]
gi|260681880|ref|YP_003213165.1| tRNA pseudouridine synthase 1 [Clostridium difficile CD196]
gi|260685478|ref|YP_003216611.1| tRNA pseudouridine synthase 1 [Clostridium difficile R20291]
gi|306518785|ref|ZP_07405132.1| tRNA pseudouridine synthase ACD [Clostridium difficile QCD-32g58]
gi|384359433|ref|YP_006197285.1| tRNA pseudouridine synthase ACD [Clostridium difficile BI1]
gi|423089471|ref|ZP_17077829.1| tRNA pseudouridine synthase A [Clostridium difficile 70-100-2010]
gi|115249111|emb|CAJ66922.1| transfer RNA pseudouridine synthase A 1 [Clostridium difficile 630]
gi|260208043|emb|CBA60248.1| tRNA pseudouridine synthase 1 [Clostridium difficile CD196]
gi|260211494|emb|CBE01638.1| tRNA pseudouridine synthase 1 [Clostridium difficile R20291]
gi|357558081|gb|EHJ39588.1| tRNA pseudouridine synthase A [Clostridium difficile 70-100-2010]
Length = 243
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 105/232 (45%), Gaps = 21/232 (9%)
Query: 34 IEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLPEEANKEAI-- 91
I+G I A++ T + + RTD GV A+ QI + K+ + E+I
Sbjct: 27 IQGTIERAIYDI---------TKEETSLIGSGRTDSGVHAIGQIANFKINSGISIESIPM 77
Query: 92 --NEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPD-QF 148
N LP+ I ++ V F+S+ + +TY Y F P ++ +++ + F
Sbjct: 78 ALNAKLPKDISVIEACEVNDDFHSRYSAKGKTYKYLVYNSKFRNPILSEISYQVKYELDF 137
Query: 149 NFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSF 208
+ + + K GTH+F F S + + R I D + KD +LIT +I G F
Sbjct: 138 DKMCSEAKSLLGTHDFKGFMSSGSSVKDTV-RTIYDIDISK---KD--DLITFEISGNGF 191
Query: 209 MLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLP-MAPGLGLLLEQVHY 259
+ + +R +VG + + RG ++ ++ + AP GL L++VHY
Sbjct: 192 LYNMVRIIVGTLVDMGRGRINEPFLDIIQSKTRSRCGHTAPAQGLFLKKVHY 243
>gi|18399149|ref|NP_564438.1| pseudouridine synthase-like protein [Arabidopsis thaliana]
gi|13430550|gb|AAK25897.1|AF360187_1 unknown protein [Arabidopsis thaliana]
gi|14532756|gb|AAK64079.1| unknown protein [Arabidopsis thaliana]
gi|332193556|gb|AEE31677.1| pseudouridine synthase-like protein [Arabidopsis thaliana]
Length = 446
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 116/274 (42%), Gaps = 59/274 (21%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ Y G ++G ++ Q +IE ++ +AL + + D ++
Sbjct: 92 VALKIMYFGKRFYGFSAE---------AQMEPSIESEVFKALERTRLLVGDK----KDSC 138
Query: 61 FQRAARTDKGVSALKQIVSLKL----------------------PEEANKEAINEHLPEQ 98
+ R RTDKGVS+ Q+++L L PE +N LP+
Sbjct: 139 YSRCGRTDKGVSSTGQVIALFLRSRLKSPPGDSKAQVNGRTGERPEYDYVRVLNRALPDD 198
Query: 99 IRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQY 158
IR++ F+++ +C AR Y Y F Q+ L +F K++
Sbjct: 199 IRVIGWSPAPIDFHARFSCYAREYKY------FFWRQN------LNLSAMDFAG---KKF 243
Query: 159 EGTHNFHNFTSKRKPLDPSC-SRYIMSFD---CEQPFVKDGLELITLKIKGQSFMLHQIR 214
G H+F NF K + C +R + F+ C+ +G +L T ++G +F+ HQIR
Sbjct: 244 IGEHDFRNFC-KMDVANVHCYTRRVTFFEVSPCQNS--HEGDQLCTFTMRGSAFLWHQIR 300
Query: 215 KMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAP 248
MV V I +G S D+I+ LD P P
Sbjct: 301 CMVAVLFMIGQGVESVDVIDTL--LDTKKTPRKP 332
>gi|423081690|ref|ZP_17070292.1| tRNA pseudouridine synthase A [Clostridium difficile 002-P50-2011]
gi|423085156|ref|ZP_17073611.1| tRNA pseudouridine synthase A [Clostridium difficile 050-P50-2011]
gi|357550268|gb|EHJ32093.1| tRNA pseudouridine synthase A [Clostridium difficile 002-P50-2011]
gi|357550488|gb|EHJ32302.1| tRNA pseudouridine synthase A [Clostridium difficile 050-P50-2011]
Length = 243
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 105/232 (45%), Gaps = 21/232 (9%)
Query: 34 IEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLPEEANKEAI-- 91
I+G I A++ T + + RTD GV A+ QI + K+ + E+I
Sbjct: 27 IQGTIERAIYDI---------TKEETNLIGSGRTDSGVHAIGQIANFKINSGISIESIPM 77
Query: 92 --NEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPD-QF 148
N LP+ I ++ V F+S+ + +TY Y F P ++ +++ + F
Sbjct: 78 ALNAKLPKDISVIEACEVNDDFHSRYSAKGKTYKYLVYNSKFRNPILSEISYQVKYELDF 137
Query: 149 NFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSF 208
+ + + K GTH+F F S + + R I D + KD +LIT +I G F
Sbjct: 138 DKMCSEAKSLLGTHDFKGFMSSGSSVKDTV-RTIYDIDISK---KD--DLITFEISGNGF 191
Query: 209 MLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLP-MAPGLGLLLEQVHY 259
+ + +R +VG + + RG ++ ++ + AP GL L++VHY
Sbjct: 192 LYNMVRIIVGTLVDMGRGRINEPFLDIIQSKTRSRCGHTAPAQGLFLKKVHY 243
>gi|294783832|ref|ZP_06749154.1| tRNA pseudouridine synthase A [Fusobacterium sp. 1_1_41FAA]
gi|294479644|gb|EFG27423.1| tRNA pseudouridine synthase A [Fusobacterium sp. 1_1_41FAA]
Length = 246
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 115/268 (42%), Gaps = 37/268 (13%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ + F Y G Y+G Q R T++G+I + L T ++I
Sbjct: 6 IKIEFRYDGSRYYGFQ----------RQPDKVTVQGEIEKIL---------KIVTKEDIN 46
Query: 61 FQRAARTDKGVSALKQI----VSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
A RTD+GV A +Q+ S +P E K + LP+ I ILS++ V K FN++++
Sbjct: 47 LISAGRTDRGVHANQQVSNFYTSSNIPVEKYKYLLTRALPKDIDILSVEEVDKNFNARHD 106
Query: 117 CNARTYSYTCPTYAFATPQDTKD-DFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
R Y Y P + + F L+ + + G H+F NF +
Sbjct: 107 AKMREYIYIISWE--KNPFEARYCKFVKNKIDVEKLKKIFSSFLGIHDFRNFRLS-DCVS 163
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
R I S D F ++ L++ I+G +F+ Q+R MVG A+ + G ++ IE
Sbjct: 164 KITIREIYSIDINY-FSENKLKIY---IRGSAFLKSQVRIMVGTALEVYYGNLPENHIE- 218
Query: 236 TFGLDQFDLPMAPGL----GLLLEQVHY 259
L+ F L GL L +++Y
Sbjct: 219 -LMLNDFSKDYKKNLVEAEGLYLNKIYY 245
>gi|403382898|ref|ZP_10924955.1| tRNA pseudouridine synthase A [Paenibacillus sp. JC66]
Length = 259
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 110/237 (46%), Gaps = 33/237 (13%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ + +Y G Y G Q + T++G++ A+F T Q+++
Sbjct: 9 IKLTVSYDGTQYSGFQIQ----------PQANTVQGELERAVFHL---------TGQSVK 49
Query: 61 FQRAARTDKGVSALKQIVSLK----LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ RTD GV A Q+V+ + +P + A+N LP+ I + + + V F+++ +
Sbjct: 50 LTSSGRTDAGVHARCQVVNFEVNSSIPIDRWCLALNSRLPKDIVVHTAEEVPMEFHARRS 109
Query: 117 CNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNF--LQALLKQYEGTHNFHNFTSKRKPL 174
++TY Y+ +A +D P + ++ LKQ EGTH+F F S+R +
Sbjct: 110 AVSKTYRYSIQRSKWANVM-YRDSRLHHPGSLSLSAMEKALKQLEGTHDFTTFCSRRAAV 168
Query: 175 DPSCSRYIMS----FDCEQPFVKDG-LELITLKIKGQSFMLHQIRKMVGVAMAIARG 226
S R I S F+ E P + DG +I + I+G F+ + +R +VG + I G
Sbjct: 169 -VSHVRTIYSTSIVFEAE-PMLGDGDAGVIHIYIQGNGFLYNMVRIIVGTLLQIGEG 223
>gi|336400024|ref|ZP_08580812.1| tRNA pseudouridine synthase A [Fusobacterium sp. 21_1A]
gi|336163221|gb|EGN66153.1| tRNA pseudouridine synthase A [Fusobacterium sp. 21_1A]
Length = 245
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 112/267 (41%), Gaps = 35/267 (13%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ + F Y G Y+G Q R T++G+I + L T + I
Sbjct: 6 IKIEFRYDGSRYYGFQ----------RQPNKITVQGEIEKIL---------RIVTKEEIN 46
Query: 61 FQRAARTDKGVSALKQI----VSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
A RTD+GV A Q+ S +P E K + LP+ I ILS++ V + FN+++N
Sbjct: 47 LISAGRTDRGVHANHQVSNFYTSSTIPIEKYKYLLTRALPKDIDILSVEEVDENFNARHN 106
Query: 117 CNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDP 176
R Y Y ++A + F L+ + + G H+F NF L+
Sbjct: 107 AKMREYIYII-SWAKNPFEARYCKFVKEKIDVRKLEKIFSDFVGVHDFKNFR-----LND 160
Query: 177 SCSRYIMS--FDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
S+ + + E + G I + IKG +F+ Q+R MVG A+ I G ++ I
Sbjct: 161 CVSKVTIRKIYQIEVKYF--GESKIKIYIKGSAFLKSQVRIMVGAALEIYYGRLPENHIR 218
Query: 235 KTFG--LDQFDLPMAPGLGLLLEQVHY 259
++ + GL L +++Y
Sbjct: 219 LMLNDFTREYKKNLVEAEGLYLNKINY 245
>gi|399516876|ref|ZP_10758457.1| tRNA pseudouridine synthase A [Leuconostoc pseudomesenteroides
4882]
gi|398648256|emb|CCJ66484.1| tRNA pseudouridine synthase A [Leuconostoc pseudomesenteroides
4882]
Length = 256
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 119/268 (44%), Gaps = 30/268 (11%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRN--QGMKTIEGDIMEALFKAGFVTEDSFNTPQN-IQ 60
+ AY G +FG Q + +N + +T++G++ + V PQ I+
Sbjct: 7 IVAYDGTDFFGFQLQ-------TKNGVESARTVQGELNK-------VVNQMAKKPQPPIK 52
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEAN----KEAINEHLPEQIRILSIKRVTKGFNSKNN 116
A+RTD GV A Q+V P + ++ +N LP I + S+ RV+ F+++ N
Sbjct: 53 VVGASRTDTGVHAFGQVVHFDFPYDIASDNFRKGLNTLLPRDILVKSVTRVSDDFHARFN 112
Query: 117 CNARTYSYTCPTYAFATP--QDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
+A+ Y Y T + P + F D + ++ L + G H+F +F +
Sbjct: 113 THAKRYIYRISTLDYTDPFKRHYTGHFHWHLD-VDRMKLALPDFLGEHDFASFAASGNET 171
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+ R I + + + L L+ +G +F+ +QIR MVGV + I G I+
Sbjct: 172 ATTVRR-ITRVELTEKAEEHELVLV---FEGNAFLYNQIRIMVGVLLEIGTGRRPVHDIQ 227
Query: 235 KTFGLDQFDLP--MAPGLGLLLEQVHYD 260
+ + + AP GL L+++ Y+
Sbjct: 228 RLIAVKDREQARFTAPASGLYLDEISYN 255
>gi|421527461|ref|ZP_15974062.1| tRNA pseudouridine synthase A [Fusobacterium nucleatum ChDC F128]
gi|402256339|gb|EJU06820.1| tRNA pseudouridine synthase A [Fusobacterium nucleatum ChDC F128]
Length = 245
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 111/274 (40%), Gaps = 49/274 (17%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ + F Y G Y+G Q R T++G+I + L T + I
Sbjct: 6 IKIEFRYDGSSYYGFQ----------RQPNKITVQGEIEKVL---------RIVTKEEIN 46
Query: 61 FQRAARTDKGVSALKQI----VSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
A RTD+GV A Q+ S +P E K + LP I ILS++ V + FN+++N
Sbjct: 47 LISAGRTDRGVHANHQVSNFYTSSNIPIEKYKYLLTRALPNDIDILSVEEVDENFNARHN 106
Query: 117 CNARTYSYTCPTYAFATPQDTKDDFRLTPDQF-------NFLQALLKQYEGTHNFHNFTS 169
R Y Y K+ F +F L+ + + G H+F NF
Sbjct: 107 AKMREYVYIISW--------EKNPFEARHCKFVKEKIVAEKLEKIFSDFIGIHDFKNFR- 157
Query: 170 KRKPLDPSCSRYIMS--FDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGF 227
L S+ + ++ E + D I + IKG +F+ Q+R MVG A+ I G
Sbjct: 158 ----LSDCVSKVTIREIYEIEVKYFGDS--KIKIYIKGSAFLKSQVRIMVGTALEIYYGR 211
Query: 228 TSKDLIEKTFG--LDQFDLPMAPGLGLLLEQVHY 259
++ I+ ++ + GL L ++ Y
Sbjct: 212 LPENRIKLMLNDFTREYKKNLVEAEGLYLNKIEY 245
>gi|448725638|ref|ZP_21708085.1| tRNA pseudouridine synthase A [Halococcus morrhuae DSM 1307]
gi|445797862|gb|EMA48300.1| tRNA pseudouridine synthase A [Halococcus morrhuae DSM 1307]
Length = 266
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 105/237 (44%), Gaps = 41/237 (17%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A AY G ++G Q R + T+EG + +AL + G + D P +
Sbjct: 3 AFRLAYDGRPFYGFQ----------RQPTVPTVEGTLFDALRELGVLDPDE-RKPSG--Y 49
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
A RTD+GVSA+ Q + L PE A+N LP IR + T F++ ++ AR
Sbjct: 50 AAAGRTDRGVSAVAQTIGLAAPEWLTPRALNGVLPGSIRAWAHAD-TGSFHATHDAVARE 108
Query: 122 YSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRY 181
Y+Y A DD R + ++++ G H+FHN T P D + R
Sbjct: 109 YTYQLHAPA-------ADDER--------ARTVMRRLAGEHDFHNLT----PDDHNTVRT 149
Query: 182 IMS-FDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTF 237
+ + + F+ ++TL+ G S L +R++V + +A G S ++++
Sbjct: 150 LAGEIERDSEFL-----IVTLRAGGFSRQL--VRRIVTLVRNVATGDASLSMVDRAL 199
>gi|258513673|ref|YP_003189895.1| tRNA pseudouridine synthase A [Desulfotomaculum acetoxidans DSM
771]
gi|257777378|gb|ACV61272.1| tRNA pseudouridine synthase A [Desulfotomaculum acetoxidans DSM
771]
Length = 250
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 115/275 (41%), Gaps = 47/275 (17%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ ++ AY G Y G Q + + + + TI+G + L S + I
Sbjct: 7 IKVILAYDGTNYHGFQIQ--------KGKRLPTIQGVLQREL---------SHLAKETIT 49
Query: 61 FQRAARTDKGVSALKQIVSL-----KLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKN 115
A RTD GV A Q+ + ++P + A+N LP IR LS + V GF+++
Sbjct: 50 VTTAGRTDSGVHARGQVFNFFTGNWQIPVDRVIYALNSVLPPDIRALSAEEVDLGFHARY 109
Query: 116 NCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNF-------LQALLKQYEGTHNFHNFT 168
+ A+TY Y +P RL Q+N+ QA+L G H+F +F
Sbjct: 110 SALAKTYCYYISRDQIVSPFT-----RLYSYQYNYPLDLDDMRQAVL-HITGEHDFKSFM 163
Query: 169 SKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFT 228
+ L S R I D + KD + + T +G F+ H +R + G + + G
Sbjct: 164 AS-GSLVKSTIRTIYQIDLIE---KDKMLIFTF--RGNGFLYHMVRIITGTLLQVGTGKI 217
Query: 229 SKDLIEKTFGLDQFDLPMA----PGLGLLLEQVHY 259
IE L + D A P LGL LE+V Y
Sbjct: 218 HYSEIETI--LKKCDRKSAGATVPALGLFLERVEY 250
>gi|385260248|ref|ZP_10038397.1| tRNA pseudouridine(38-40) synthase [Streptococcus sp. SK140]
gi|385192168|gb|EIF39578.1| tRNA pseudouridine(38-40) synthase [Streptococcus sp. SK140]
Length = 249
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 111/267 (41%), Gaps = 35/267 (13%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G + G Q R ++++ +I + L K N Q I
Sbjct: 7 IISYDGYAFAGFQ----------RQPHARSVQEEIEKTLTK--------LNKGQAITIHG 48
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV AL Q++ LP + ++E A++ PE I ++SI+ V F+ + ++
Sbjct: 49 AGRTDSGVHALGQVIHFDLPYQMDEEKLRFALDTQSPEDIDVISIEIVADDFHCRYAKHS 108
Query: 120 RTYSYTCPTYAFATPQDTKDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+TY + P++ T P +Q +K+ EGTH+F FT+ ++
Sbjct: 109 KTYEFIVDR---GRPKNPMRRHYATHYPYPLDVERMQLAVKKLEGTHDFTGFTASGTSVE 165
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
R I V + + +T G F+ QIR MVG + I + I+
Sbjct: 166 DKV-RTITEASLR---VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPIEQIDL 221
Query: 236 TFGLD--QFDLPMAPGLGLLLEQVHYD 260
Q P A GL L+++ Y+
Sbjct: 222 ILEKKDRQLAGPTAASNGLYLKEIRYE 248
>gi|430813781|emb|CCJ28906.1| unnamed protein product [Pneumocystis jirovecii]
Length = 353
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 77/308 (25%), Positives = 128/308 (41%), Gaps = 66/308 (21%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKT----IEGDIMEALFKAGFVTEDSFNTP 56
+A FAY G Y GL + QG KT +E I AL KA + +
Sbjct: 9 IAFKFAYLGWYYNGLVT-----------QGNKTQLPTVEETIFFALKKAKLIDHE----- 52
Query: 57 QNIQFQRAARTDKGVSALKQIVSL--------------KLPEEANKEAINEHLPEQIRIL 102
+N F R RTDKGV+A+ Q+++L K E + +N+ LP+ IRIL
Sbjct: 53 RNCNFSRCGRTDKGVTAIGQVMALNVRSNKPFNEDSEEKWSEIKYIDILNKLLPKTIRIL 112
Query: 103 S-IKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPD-QFNF--LQALLKQY 158
+ + F+++ +C R Y Y F+ +P+ Q N + +
Sbjct: 113 AWCSDLPSDFSARFSCQKRHYKYLF--------------FKDSPNVQLNIEKMSKAASYF 158
Query: 159 EGTHNFHNFTSKRKPLDPS-----CSRYIMSFDCEQ-PFVKDGLELITLKIKGQSFMLHQ 212
G H+F NF LD S +R I + + ++ L ++G +F+ HQ
Sbjct: 159 IGKHDFRNFCK----LDTSKQITNFTRIITRSEINKYNTAEENDSLYVFDLEGTAFLWHQ 214
Query: 213 IRKMVGVAMAIARGFTSKDLIEKTFGLDQFD----LPMAPGLGLLLEQVHYDLYNQKYGQ 268
+R M+ V + + ++I+ + +A L L+L H+ N YG+
Sbjct: 215 VRSMIAVLFLVGQDLEKPEIIKTLLDTSKTSQKPIYNIAHDLPLILYDCHFQNLNWNYGE 274
Query: 269 DGMHESLH 276
+ +SL+
Sbjct: 275 ETFSQSLY 282
>gi|412988146|emb|CCO17482.1| tRNA pseudouridine synthase A [Bathycoccus prasinos]
Length = 314
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 119/280 (42%), Gaps = 42/280 (15%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G YFG Q + + TI+ ++ L + + + +
Sbjct: 36 IVSYDGTNYFGFQKQ---------GEDKITIQSELERCLMQITCLDREL------LCLGA 80
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE-----AINEHLPEQIRILSIKRVTKGFNSKNNCN 118
A RTD GV A KQ+ E E A N L E +R++ I + F+S+ +
Sbjct: 81 AGRTDAGVHARKQVFHFYTKEPLKDELNFMRACNRLLNEDVRVMEIAKPHPMFHSRFHAI 140
Query: 119 ARTYSYTCPTYAFATPQDTKDDFRLTPDQFN--FLQALLKQYEGTHNFHNFTSKR---KP 173
+TY YT +P K + +++ L+ K + GTH+F F ++ K
Sbjct: 141 EKTYRYTIDFGLPHSPFHRKTALSVGYREYDMKLLEEACKVFVGTHDFAAFMNRSRDGKN 200
Query: 174 LDPSCSRYIMSFDC---------EQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIA 224
L+ + R I SFD + + L+ L + G F+ Q+R MVG +++A
Sbjct: 201 LERNSERTIYSFDVIRGGGEEEGGERYEDPSSSLVYLYVTGNGFLYKQVRNMVGAILSVA 260
Query: 225 RG-FTSKDL---IEKTFGLDQFDLPM-APGLGLLLEQVHY 259
G +T DL +EK D+ +PM AP GL L V Y
Sbjct: 261 GGRYTIDDLKLFMEKK---DRKLIPMAAPAKGLCLYDVKY 297
>gi|170097145|ref|XP_001879792.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645195|gb|EDR09443.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 446
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 106/252 (42%), Gaps = 40/252 (15%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ F+YSG Y GL + + T+EG + +AL KA + +++ +
Sbjct: 52 IALKFSYSGWEYGGLAFQ-------LGPTPLPTVEGVLFDALAKARLIDQEAGF--EGCG 102
Query: 61 FQRAARTDKGVSALKQIVSLKLP------EEANKEAINEHLPEQIRILSIKRVTKGFNSK 114
+++ RTD+GVSA Q+VSL E +N LP+ IR+L+ V F+++
Sbjct: 103 WEKCGRTDRGVSAAGQVVSLWATTSKPTFEHDYLSILNRLLPDTIRVLAWSPVAPKFSAR 162
Query: 115 NNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
+C R Y Y P+ + RL G H+F N L
Sbjct: 163 FSCLYRHYKYFFSPLGLDIPRMQQAALRLV---------------GDHDFRNLCK----L 203
Query: 175 DPS-----CSRYIMSFDCEQ-PFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFT 228
DP R +++ + E ++G + + G +F+ HQ+R ++ + + G
Sbjct: 204 DPQKQITIFRRKVITAEIEPLSLAENGEGVYVFNLVGTAFLYHQVRHIMAILFLVGTGLE 263
Query: 229 SKDLIEKTFGLD 240
++ ++
Sbjct: 264 PPSVVSSLLNVE 275
>gi|76637689|ref|XP_875031.1| PREDICTED: pseudouridylate synthase-like 1 [Bos taurus]
gi|297484219|ref|XP_002694181.1| PREDICTED: pseudouridylate synthase-like 1 [Bos taurus]
gi|296479092|tpg|DAA21207.1| TPA: pseudouridylate synthase-like 1 [Bos taurus]
Length = 303
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 122/282 (43%), Gaps = 32/282 (11%)
Query: 10 VGYFGLQSKYLFFLIFCRN--QGMKTIEGDIMEALFKAGFVTE--DSFNTPQNIQFQRAA 65
+G + ++YL + + G+ + G + A+ ++ E + N+ ++F ++
Sbjct: 1 MGAGSVPARYLVYFQYLGTDFNGVAAVRG-VQRAVGVQNYLEEAAERLNSVMPVKFTISS 59
Query: 66 RTDKGVSALKQIVSLKLPEEAN---------KEAINEHLPE-QIRILSIKRVTKGFNSKN 115
RTD GV AL L + ++ EA+N HL IR+L RV F++++
Sbjct: 60 RTDAGVHALSNAAHLDIQRRSDLPPFSPEVLTEALNTHLKHPAIRVLQAFRVPSHFHARH 119
Query: 116 NCNARTYSYT----CPTYAFATPQDTKDDFRLTPDQFNF--LQALLKQYEGTHNFHNFTS 169
+RTY Y CP + + L D + +Q + GTH+F F S
Sbjct: 120 AAISRTYLYRLATGCPRPDRLPVFERNRCWALQADCLDVAAMQEAAQHLLGTHDFSAFQS 179
Query: 170 KRKPLDP---SCSRYIMSFDCEQPFV----KDGLELITLKIKGQSFMLHQIRKMVGVAMA 222
P + R +S D PFV L+ +++ + QSF+ Q+R+M V +A
Sbjct: 180 AGSPASSPVRTLRRASVSPDPASPFVLPEESRQLQFWSMEFESQSFLYKQVRRMTAVLVA 239
Query: 223 IARG----FTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYD 260
+ G K ++E L + +AP GL L+ V Y+
Sbjct: 240 VGLGALMPAQVKAILESRDPLGKHQSRVAPAHGLFLKSVLYE 281
>gi|259047524|ref|ZP_05737925.1| tRNA pseudouridine synthase A [Granulicatella adiacens ATCC 49175]
gi|259035715|gb|EEW36970.1| tRNA pseudouridine synthase A [Granulicatella adiacens ATCC 49175]
Length = 249
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 122/270 (45%), Gaps = 43/270 (15%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
+ Y G Y G Q + + +I+ ++ +AL K Q I
Sbjct: 6 LTIQYDGTPYVGFQVQ----------ENGNSIQAELNKALKK--------MTKGQYIPVS 47
Query: 63 RAARTDKGVSALKQIVSLKLPE--EANK--EAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ RTD GV A Q+V + P+ EAN A+N LP IRI+S + V++ F+++ +
Sbjct: 48 GSGRTDSGVHANGQVVHIDYPKRIEANSLVRAMNSLLPTSIRIVSAEAVSEEFHARYSVT 107
Query: 119 ARTYSYTCPTYAFATP----QDTKDDFRLTPDQFN-FLQALLKQYEGTHNFHNFTSKRKP 173
+ Y Y T +P + F+ D+ N +A++ G H+F +F S +
Sbjct: 108 GKRYIYKVTTAQVQSPFLRQYELHHPFKTDVDRINKAFEAVI----GEHDFTSFCSTKSD 163
Query: 174 LDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLI 233
D S R + + + ++G ELI +G+ F+ + +R +VG A+ I G + +
Sbjct: 164 KD-SKVRVVTKAEVK----RNGDELI-FTFEGKGFLYNMVRILVGTALQIGDGLREVEEM 217
Query: 234 EKTFGLDQFDL----PMAPGLGLLLEQVHY 259
++ L+ D P AP GL L++V Y
Sbjct: 218 KQI--LEAMDRNAAGPTAPSHGLYLDEVFY 245
>gi|338733784|ref|YP_004672257.1| tRNA pseudouridine synthase A 1 [Simkania negevensis Z]
gi|336483167|emb|CCB89766.1| tRNA pseudouridine synthase A 1 [Simkania negevensis Z]
Length = 245
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 88/180 (48%), Gaps = 15/180 (8%)
Query: 64 AARTDKGVSALKQIVSLKLPEEANKEAI---NEHLPEQIRILSIKRVTKGFNSKNNCNAR 120
+ RTD GV A KQ+ + +E + N LP +IR+LSI++V F+++ + +
Sbjct: 48 SGRTDAGVHAKKQVAHFETEKELPSTFLDDANSKLPSEIRLLSIEKVEANFHARFSAVQK 107
Query: 121 TYSYTCPTYAFATPQDTKDDFRLTPDQ-FNFLQALLKQYEGTHNFHNFTSKR-KPLDPSC 178
TY Y T +P + + L + LQ LK + GTH+F +F ++R P P
Sbjct: 108 TYHYHISTAPVLSPFECRYRTHLYYEMDLENLQQALKYFIGTHDFSSFANERGTPCSPIK 167
Query: 179 SRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTS----KDLIE 234
+ + ++ +V +G L+ G F+ +R +VG + +ARG S DLIE
Sbjct: 168 TLHALN------YVPEGDGKFRLEFTGNGFLYKMVRNLVGTLVYVARGKLSLKELSDLIE 221
>gi|338730830|ref|YP_004660222.1| tRNA pseudouridine synthase A [Thermotoga thermarum DSM 5069]
gi|335365181|gb|AEH51126.1| tRNA pseudouridine synthase A [Thermotoga thermarum DSM 5069]
Length = 260
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 117/269 (43%), Gaps = 35/269 (13%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A + +Y G +FG Q + + ++T++G I +AL E F T I
Sbjct: 5 AAVISYDGNNFFGFQLQ----------KDVRTVQGVIEQAL-------ERIFKT--KISV 45
Query: 62 QRAARTDKGVSALKQIVSLK----LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNC 117
A RTD GV A+ Q+++ +P E K A+N +LP+ + + + V K FN +
Sbjct: 46 VCAGRTDTGVHAVGQVIAFDCPYDIPPENMKNALNANLPDDVYVRKVIEVPKDFNPRFCA 105
Query: 118 NARTYSYTCPTYAFATPQD-TKDDFRLTPDQF--NFLQALLKQYEGTHNFHNFTSKRKPL 174
R Y Y Y TP T+ + P + N ++ K EG H+F F +K +
Sbjct: 106 TRRIYHYFI--YNGKTPNVFTRKYYWWFPYELDVNKMREAAKYLEGEHDFKAF-AKTEGN 162
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
+ S R I ++ LI ++++G+SF+ +R +VG + + G I+
Sbjct: 163 EKSTVRTIYRIR----ILRLRKNLILIRVEGRSFLRRMVRNIVGALVKVGVGVWEPIKIK 218
Query: 235 KTFGLDQFDL--PMAPGLGLLLEQVHYDL 261
+ L AP GL L V + L
Sbjct: 219 EILESRNRSLAPATAPAHGLYLYSVEFSL 247
>gi|307705317|ref|ZP_07642179.1| tRNA pseudouridine synthase A [Streptococcus mitis SK597]
gi|307621104|gb|EFO00179.1| tRNA pseudouridine synthase A [Streptococcus mitis SK597]
Length = 249
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 108/258 (41%), Gaps = 43/258 (16%)
Query: 22 FLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLK 81
F F R ++++ +I + L + N Q I A RTD GV AL Q++
Sbjct: 15 FAGFQRQPHARSVQEEIEKTLTR--------LNKGQAITVHGAGRTDSGVHALGQVIHFD 66
Query: 82 LPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDT 137
LP + ++E A++ PE I ++SI+ V F+ + +++TY + P++
Sbjct: 67 LPYQMDEEKLRFALDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDR---GRPKNP 123
Query: 138 KDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVK 193
T P +Q +K+ EGTH+F FT+ ++ I + V
Sbjct: 124 MRRHYATHFPYPLDVERMQMAIKKLEGTHDFTGFTASGTNVEDK----IRTITEASLRVD 179
Query: 194 DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDL--------- 244
+ + +T G F+ QIR MVG + I K ++Q DL
Sbjct: 180 ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIG---------NKRMPVEQIDLILEKKDRQL 230
Query: 245 --PMAPGLGLLLEQVHYD 260
P A GL L+++ Y+
Sbjct: 231 AGPTAASNGLYLKEIRYE 248
>gi|417934521|ref|ZP_12577841.1| tRNA pseudouridine synthase A [Streptococcus mitis bv. 2 str.
F0392]
gi|340771091|gb|EGR93606.1| tRNA pseudouridine synthase A [Streptococcus mitis bv. 2 str.
F0392]
Length = 249
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 111/267 (41%), Gaps = 35/267 (13%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G + G Q R ++++ +I + L + N + I
Sbjct: 7 IISYDGYAFAGFQ----------RQPHARSVQEEIEKTLTR--------LNKGRAITVHG 48
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV AL Q++ LP + ++E A++ PE I ++SI+ V F+ + ++
Sbjct: 49 AGRTDSGVHALGQVIHFDLPYQMDEEKLRFALDTQSPEDIDVISIEIVADDFHCRYAKHS 108
Query: 120 RTYSYTCPTYAFATPQDTKDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+TY + P++ T P +QA +K+ EGTH+F FT+
Sbjct: 109 KTYEFIVDR---GRPKNPMRRHYATHFPYPLDVERMQAAIKKLEGTHDFTGFTAS----G 161
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
S + + V + + +T G F+ QIR MVG + I + I+
Sbjct: 162 TSVENKVRTITEASLSVDETGQFLTFTFSGNGFLYKQIRNMVGTMLKIGNNRMPVEQIDL 221
Query: 236 TFGLD--QFDLPMAPGLGLLLEQVHYD 260
Q P A GL L+++ Y+
Sbjct: 222 ILEKKDRQLAGPTAAPNGLYLKEIRYE 248
>gi|331085595|ref|ZP_08334679.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330407482|gb|EGG86984.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 239
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 113/264 (42%), Gaps = 33/264 (12%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
M AY G GY G Q G TI+G I L K +P ++
Sbjct: 1 MTIAYDGGGYKGWQR-------LTNEPG--TIQGTIERVLSKIE-------GSP--VKIS 42
Query: 63 RAARTDKGVSALKQIVS--LKLPE--EANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ RTD GV A Q+ LK E E ++ +N LPE IRI ++ V++ F+S+ +
Sbjct: 43 GSGRTDAGVHAKGQVAHAFLKTNEDPELLRQELNRMLPEDIRICLVESVSQSFHSRYSAV 102
Query: 119 ARTYSYTCPTYAFATPQDTKDDF-RLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPS 177
++ Y Y + A K + R + ++ GTH+F +FT + +
Sbjct: 103 SKVYEYRIDQRSRADVFTRKYCYHRPVHLDLDRMRQAADHLTGTHDFGSFTDNK---EAD 159
Query: 178 CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTF 237
R I S D +K+ E + L +G F+ H +R + G + + G + + + + F
Sbjct: 160 SVRTIFSID-----MKEENEKLVLAFRGDGFLYHMVRILAGTLLEVGEGIRTPESVLEAF 214
Query: 238 GLDQFDLP--MAPGLGLLLEQVHY 259
L +AP GL L +V+Y
Sbjct: 215 HHRDRSLTGFLAPAHGLCLREVNY 238
>gi|384438771|ref|YP_005653495.1| tRNA pseudouridine synthase A [Thermus sp. CCB_US3_UF1]
gi|359289904|gb|AEV15421.1| tRNA pseudouridine synthase A [Thermus sp. CCB_US3_UF1]
Length = 253
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 110/264 (41%), Gaps = 30/264 (11%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
++ Y G G+ GLQ + G++T++G++ AL + G + P+ +
Sbjct: 6 ILAEYDGTGFAGLQRQ---------RPGLRTVQGELEGALARIGAI-------PKAVA-- 47
Query: 63 RAARTDKGVSALKQIVSL----KLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
A RTD GV AL + ++P E EA+N LPE +++L + V + F+++ +
Sbjct: 48 -AGRTDAGVHALAMPFHVDLPGRIPTERIPEALNRLLPEDLKVLRAQEVAQDFHARKDAL 106
Query: 119 ARTYSYTCPTYAFATPQDTKDDFRLT-PDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPS 177
R Y Y +P L P ++ L G HNF F +
Sbjct: 107 WRAYRYRVLLRPHPSPLLRHRALWLRHPLDLEAMEEALPLLLGRHNFLGFAKEEV---RE 163
Query: 178 CSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTF 237
+R ++ E+ + G EL +G SF+ Q+R MVG + + G + ++
Sbjct: 164 GTRELLEARLERVEGEAGPEL-RFYFRGTSFLRGQVRGMVGTLLEVGLGKRPPESLKAIL 222
Query: 238 GLDQFDL--PMAPGLGLLLEQVHY 259
L P AP GL + Y
Sbjct: 223 ETADRRLAGPSAPAQGLYFLEAAY 246
>gi|336366370|gb|EGN94717.1| hypothetical protein SERLA73DRAFT_114183 [Serpula lacrymans var.
lacrymans S7.3]
Length = 464
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 103/247 (41%), Gaps = 44/247 (17%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ F YSG Y GL + + T+E + A K V D
Sbjct: 60 IAVKFCYSGWEYNGLAFQN-------GPTPLPTVEEVLFNAFAKTRLVDPD--KGLDGCG 110
Query: 61 FQRAARTDKGVSALKQIVSL----KLP--EEANKE-----AINEHLPEQIRILSIKRVTK 109
++R RTD+GVSA Q+VSL + P EE E +N LP IR+L+ ++
Sbjct: 111 WERCGRTDRGVSAAGQVVSLWPSMRQPSREETRSELRYVSILNRVLPPTIRVLAWSPISS 170
Query: 110 GFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTS 169
F+++ NC +R Y Y F +PQ+ +Q + G H+F N
Sbjct: 171 TFSARFNCQSRHYKY------FFSPQEL---------DLGLMQQAADRLVGEHDFRNLCK 215
Query: 170 KRKPLDPSCSRYIMSFDCEQPFVKDGL---ELITLKIKGQSFMLHQIRKMVGVAMAIARG 226
LDP ++ I +F+ K L ++G +F+ HQ+R ++ + + G
Sbjct: 216 ----LDP--AKQITNFNRRVLLAKISPISDHLCVFDLRGTAFLYHQVRHIMAILFLVGTG 269
Query: 227 FTSKDLI 233
++
Sbjct: 270 LEHPSIV 276
>gi|238923689|ref|YP_002937205.1| tRNA pseudouridine synthase A [Eubacterium rectale ATCC 33656]
gi|238875364|gb|ACR75071.1| tRNA pseudouridine synthase A [Eubacterium rectale ATCC 33656]
Length = 276
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 110/275 (40%), Gaps = 53/275 (19%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
++ AY G Y G Q + TI+G + L S + ++
Sbjct: 32 IIVAYDGTRYKGWQ---------VQKSTDDTIQGKLQHVL---------STLAGKPVEVI 73
Query: 63 RAARTDKGVSALKQIVSLKLPEEANKEAI----NEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ RTD GV A+ Q+ S +P+ +K+ I NEHLP I + I V F+++ N
Sbjct: 74 GSGRTDAGVHAVGQVASFHMPKHFSKDEIFIWLNEHLPADIAVTDISNVPDRFHARYNAV 133
Query: 119 ARTYSYTCPT------------YAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHN 166
++TY YT T Y + P DT D+ A L G H+F
Sbjct: 134 SKTYVYTIHTGIVSDVFRRKYVYDYDKPLDT--------DRMKKAAAYL---LGEHDFKA 182
Query: 167 FTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARG 226
F R + S R I S D E K G +++ + G F+ + IR + G + + G
Sbjct: 183 FCGNRH-MKKSTVRTIFSIDIE----KTGADIV-ISYTGDGFLQNMIRIITGTLIEVGDG 236
Query: 227 FTSKDLIEKTFGLDQFDLP--MAPGLGLLLEQVHY 259
+ D + + AP GL LE+V Y
Sbjct: 237 RKNPDAVMEILASKDRAQAGYTAPACGLRLERVDY 271
>gi|419817507|ref|ZP_14341665.1| tRNA pseudouridine synthase A [Streptococcus sp. GMD4S]
gi|404465842|gb|EKA11228.1| tRNA pseudouridine synthase A [Streptococcus sp. GMD4S]
Length = 249
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 110/267 (41%), Gaps = 35/267 (13%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G + G Q R ++++ +I + L + N Q I
Sbjct: 7 IISYDGYAFSGFQ----------RQPHARSVQEEIEKTLMR--------LNKGQAITVHG 48
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV AL Q++ LP + + E A++ PE I ++SIK V F+ + ++
Sbjct: 49 AGRTDSGVHALGQVIHFDLPYQMDVEKLRFALDTQSPEDIDVISIKLVADDFHCRYAKHS 108
Query: 120 RTYSYTCPTYAFATPQDTKDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+TY + P++ T P +Q +K+ EGTH+F FT+ ++
Sbjct: 109 KTYEFIVDR---GRPKNPMRRHYATHFPYPLDVERMQIAVKKLEGTHDFTGFTASGTSVE 165
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
R I V + + +T G F+ QIR MVG + I + I+
Sbjct: 166 DKV-RTITEASLS---VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDL 221
Query: 236 TFGLDQFDL--PMAPGLGLLLEQVHYD 260
L P A GL L+++ Y+
Sbjct: 222 ILEKKDRKLAGPTAAPNGLYLKEIRYE 248
>gi|392406879|ref|YP_006443487.1| pseudouridylate synthase I [Anaerobaculum mobile DSM 13181]
gi|390620015|gb|AFM21162.1| pseudouridylate synthase I [Anaerobaculum mobile DSM 13181]
Length = 261
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 114/266 (42%), Gaps = 32/266 (12%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A + +Y G + G Q R +G+ T++ + +AL S ++
Sbjct: 5 AALISYDGSAFHGFQ----------RQRGLPTVQEALEDAL---------SLLNKGMVRV 45
Query: 62 QRAARTDKGVSALKQIVSLKL----PEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNC 117
A RTD+GV AL Q+VS + +A ++A+ +LP I + + V +GF+++ +
Sbjct: 46 TGAGRTDRGVHALGQVVSFDMFWPHGPDALRKALEANLPSSIGVFEVVPVDEGFDARKSA 105
Query: 118 NARTYSYTCPTYAFATPQDTKDDFR-LTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDP 176
R Y+Y P + +R P +A L +G H+F F K L
Sbjct: 106 LWRKYAYFIWKGDCRLPHLDEHLWRNGKPWDMQKARAFLSMIKGHHDFSAFCRKAD-LPD 164
Query: 177 SCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKT 236
+ R I+ E + + +I + I G+SF+ + +R ++G +A G S +E
Sbjct: 165 NAWRTIIDAKLE-----NIVHMIKVTIIGRSFLTNMVRIIIGTMDEVAAGRRSLPEVELL 219
Query: 237 F--GLDQFDLPMAPGLGLLLEQVHYD 260
G + P P L L +V YD
Sbjct: 220 LKSGSREEAGPTVPANALFLWEVKYD 245
>gi|313245560|emb|CBY40253.1| unnamed protein product [Oikopleura dioica]
Length = 402
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 119/290 (41%), Gaps = 53/290 (18%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ F+Y G Y GLQ + G TIE I +A+ + V D T I
Sbjct: 67 IALRFSYDGTKYNGLQRSPV-------PAGKTTIEDVIFDAMLRTKVV--DDIGTADYIA 117
Query: 61 FQRAARTDKGVSALKQIVSL----KLPEEANKE-----------AINEHLPEQIRILSIK 105
RTDKGV A+ ++SL +L E+ E IN LP+ I I S
Sbjct: 118 ---GGRTDKGVHAVNNVISLFVNSRLSEDEINENVTVGERNFVAIINRQLPDDIWITSWA 174
Query: 106 RVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFH 165
+++ F+++ NC +R Y+Y + D L + ++L G H+F
Sbjct: 175 QISSDFSARFNCKSRHYNYIFDSSGL--------DVELMKEAASYLI-------GEHDFR 219
Query: 166 NFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIAR 225
NF S+ + + R + D +Q V + + IK F+ HQIR + + +
Sbjct: 220 NF-SQAQLERQNTVRVCFAADIKQ--VPNMSSMCVFSIKASGFLYHQIRLTMAILALVGN 276
Query: 226 GFTSKDLIEKTFGLDQFDLPMAPGL------GLLLEQVHYDLYNQKYGQD 269
++++ ++++ P P GL+L Y+ G+D
Sbjct: 277 KLEKSTIVKELLDVEKY--PRRPSYKYANPDGLVLIDCEYENVEWIDGED 324
>gi|336419183|ref|ZP_08599449.1| tRNA pseudouridine synthase A [Fusobacterium sp. 11_3_2]
gi|336163874|gb|EGN66788.1| tRNA pseudouridine synthase A [Fusobacterium sp. 11_3_2]
Length = 245
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 111/268 (41%), Gaps = 37/268 (13%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+ + F Y G Y+G Q R T++G+I + L T + I
Sbjct: 6 IKLEFRYDGSRYYGFQ----------RQPNKITVQGEIEKIL---------RIVTKEEIN 46
Query: 61 FQRAARTDKGVSALKQI----VSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
A RTD+GV A Q+ S +P E K + LP+ I ILS++ V + FN+++N
Sbjct: 47 LISAGRTDRGVHANHQVSNFYTSSTIPIEKYKYLLTRALPKDIDILSVEEVDENFNARHN 106
Query: 117 CNARTYSYTCPTYAFATPQDTKD-DFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
R Y Y P + + F L+ + + G H+F NF L+
Sbjct: 107 AKMREYIYIIS--WIKNPFEARYCKFVKEKIDVRKLEKIFSDFVGVHDFKNFR-----LN 159
Query: 176 PSCSRYIMS--FDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLI 233
S+ + + E + G I + IKG +F+ Q+R MVG A+ I G ++ I
Sbjct: 160 DCVSKVTIREIYQIEVKYF--GESKIKIYIKGSAFLKSQVRIMVGTALEIYYGRLPENHI 217
Query: 234 EKTFG--LDQFDLPMAPGLGLLLEQVHY 259
++ + GL L +++Y
Sbjct: 218 RLMLNDFTREYKKNLVEAEGLYLNKINY 245
>gi|260588018|ref|ZP_05853931.1| tRNA pseudouridine synthase A [Blautia hansenii DSM 20583]
gi|331082412|ref|ZP_08331538.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 6_1_63FAA]
gi|260541545|gb|EEX22114.1| tRNA pseudouridine synthase A [Blautia hansenii DSM 20583]
gi|330400898|gb|EGG80499.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 6_1_63FAA]
Length = 244
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 104/235 (44%), Gaps = 24/235 (10%)
Query: 33 TIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLPEEANKEAI- 91
TI+G I + L K TE +Q Q A RTD GV A Q+ + E + E I
Sbjct: 26 TIQGKIEDVLTKM-LGTE--------VQIQGAGRTDAGVHAKGQVANFHADCEKSCEEIC 76
Query: 92 ---NEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRL--TPD 146
NE+LPE I I + + F+S+ N + Y Y + + K L T D
Sbjct: 77 QYLNEYLPEDIEISKVSEAEERFHSRLNAKEKVYQYRIVSGIHKNVFERKYQCPLHETLD 136
Query: 147 QFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQ 206
N +Q K EGTH+F +F S +K + S R I S + + D + I + G
Sbjct: 137 -VNAMQEAAKYLEGTHDFKSFCSNKK-MKKSSVRTIYSIE-----IVDLTQEIVITYTGN 189
Query: 207 SFMLHQIRKMVGVAMAIARGFTSKDLIEKTF-GLDQFDLPM-APGLGLLLEQVHY 259
F+ + +R + G + + RG + ++ G D+ + AP GL L +V Y
Sbjct: 190 GFLYNMVRILTGTLIEVGRGRRKPEEMKGILEGCDRKEAGFTAPARGLTLLEVRY 244
>gi|164686559|ref|ZP_02210587.1| hypothetical protein CLOBAR_00126 [Clostridium bartlettii DSM
16795]
gi|164604428|gb|EDQ97893.1| tRNA pseudouridine synthase A [Clostridium bartlettii DSM 16795]
Length = 201
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 100/209 (47%), Gaps = 16/209 (7%)
Query: 59 IQFQRAARTDKGVSALKQIVSLK----LPEEANKEAINEHLPEQIRILSIKRVTKGFNSK 114
++ + RTD GV AL Q+ + K +P + +A+N LP+ I I+S + V F+++
Sbjct: 1 MKVTASGRTDAGVHALGQVANFKTESKIPADRLPDALNAKLPKDISIISCEEVDIDFHAR 60
Query: 115 NNCNARTYSYTCPTYAFATP--QDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRK 172
N +TY Y + +P +D R D + ++ K GTH+F F S
Sbjct: 61 YNACGKTYRYLIYNKPYRSPLYKDLSYHVRYDLD-LDKIRLEAKSLIGTHDFGGFMSSGS 119
Query: 173 PLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDL 232
+ + R I D ++ DG +I++++ G F+ + +R +VG + I RG ++
Sbjct: 120 SVKDTV-RTIYDVDIQE---NDG--MISIEVSGNGFLYNMVRIIVGTLVDIGRGRIKHNM 173
Query: 233 IEKTFGLDQFDLP--MAPGLGLLLEQVHY 259
E+ + AP GL L++V+Y
Sbjct: 174 -EEIINSKSRSMCGHTAPAHGLFLKKVNY 201
>gi|406587731|ref|ZP_11062569.1| tRNA pseudouridine synthase A, partial [Streptococcus sp. GMD1S]
gi|404472787|gb|EKA17201.1| tRNA pseudouridine synthase A, partial [Streptococcus sp. GMD1S]
Length = 248
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 110/267 (41%), Gaps = 35/267 (13%)
Query: 4 MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQR 63
+ +Y G + G Q R ++++ +I + L + N Q I
Sbjct: 7 IISYDGYAFSGFQ----------RQPHARSVQEEIEKTLMR--------LNKGQAITVHG 48
Query: 64 AARTDKGVSALKQIVSLKLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
A RTD GV AL Q++ LP + + E A++ PE I ++SIK V F+ + ++
Sbjct: 49 AGRTDSGVHALGQVIHFDLPYQMDVEKLRFALDTQSPEDIDVISIKLVADDFHCRYAKHS 108
Query: 120 RTYSYTCPTYAFATPQDTKDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLD 175
+TY + P++ T P +Q +K+ EGTH+F FT+ ++
Sbjct: 109 KTYEFIVDR---GRPKNPMRRHYATHFPYPLDVERMQIAVKKLEGTHDFTGFTASGTSVE 165
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
R I V + + +T G F+ QIR MVG + I + I+
Sbjct: 166 DKV-RTITEASLS---VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDL 221
Query: 236 TFGLDQFDL--PMAPGLGLLLEQVHYD 260
L P A GL L+++ Y+
Sbjct: 222 ILEKKDRKLAGPTAAPNGLYLKEIRYE 248
>gi|357239246|ref|ZP_09126581.1| tRNA pseudouridine synthase A [Streptococcus ictaluri 707-05]
gi|356751815|gb|EHI68945.1| tRNA pseudouridine synthase A [Streptococcus ictaluri 707-05]
Length = 249
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 105/248 (42%), Gaps = 21/248 (8%)
Query: 21 FFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSL 80
F F R +T++ +I + L K N+ +Q A RTD V A Q++
Sbjct: 14 LFSGFQRQSAARTVQEEIEKTLLK--------LNSGVPVQIHGAGRTDASVHAYGQVIHF 65
Query: 81 KLPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATP-- 134
L + + E A++ P+ I ++ ++ V F+S+ N +++TY + P
Sbjct: 66 DLEAQCDIEKLRFALDTQTPDDIDVVGLEEVANDFHSRYNKHSKTYEFIVDIGRPKNPMM 125
Query: 135 QDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKD 194
++ + D + ++ +K GTH+F FT+ +D + C +P
Sbjct: 126 RNYATHYPYALD-ISRIEDAIKDLVGTHDFTGFTAAGTSVDNKVRTITHASVCHEP---- 180
Query: 195 GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE--KTFGLDQFDLPMAPGLGL 252
+ + G F+ Q+R MVG + I G + ++ T Q P A G GL
Sbjct: 181 SKQFLIFTFSGNGFLYKQVRNMVGTLLKIGNGRMPIEQVKLILTSKNRQLAGPTAAGNGL 240
Query: 253 LLEQVHYD 260
L+++ Y+
Sbjct: 241 YLKEIQYE 248
>gi|417923706|ref|ZP_12567163.1| tRNA pseudouridine synthase A [Streptococcus mitis SK569]
gi|342836588|gb|EGU70799.1| tRNA pseudouridine synthase A [Streptococcus mitis SK569]
Length = 249
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 106/249 (42%), Gaps = 25/249 (10%)
Query: 22 FLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLK 81
F F R ++++ +I + L K N Q + A RTD GV AL Q++
Sbjct: 15 FAGFQRQPHARSVQEEIEKTLTK--------LNKGQAVTVHGAGRTDSGVHALGQVIHFD 66
Query: 82 LPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDT 137
LP + ++E A++ PE I ++SI+ V F+ + +++TY + P++
Sbjct: 67 LPYQMDEEKLRFALDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFVVDR---GRPKNP 123
Query: 138 KDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVK 193
T P +Q +K+ EGTH+F FT+ ++ R I V
Sbjct: 124 MRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKV-RTITEASLR---VD 179
Query: 194 DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD--QFDLPMAPGLG 251
+ + +T G F+ QIR MVG + I + I+ Q P A G
Sbjct: 180 ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPNG 239
Query: 252 LLLEQVHYD 260
L L+++ Y+
Sbjct: 240 LYLKEIRYE 248
>gi|18977290|ref|NP_578647.1| tRNA pseudouridine synthase A [Pyrococcus furiosus DSM 3638]
gi|397651422|ref|YP_006492003.1| tRNA pseudouridine synthase A [Pyrococcus furiosus COM1]
gi|24638312|sp|Q8U2C1.1|TRUA_PYRFU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|18892961|gb|AAL81042.1| putative tRNA pseudouridine synthase a [Pyrococcus furiosus DSM
3638]
gi|393189013|gb|AFN03711.1| tRNA pseudouridine synthase A [Pyrococcus furiosus COM1]
Length = 266
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 121/266 (45%), Gaps = 50/266 (18%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G + G Q R ++TIEG+I+ AL AG E+
Sbjct: 3 VALKIAYDGTKFHGFQ----------RQPNVRTIEGEILRALKDAGIEFEN--------- 43
Query: 61 FQRAARTDKGVSALKQIVSLKLPEE--ANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F+ A+RTD+GVSA +++L ++ N +N + + + I I V + F+ + N
Sbjct: 44 FKSASRTDRGVSARGNVIALSTEDDRIKNPMVLNSRMSD-VWIWGIAEVPEDFHPRFWAN 102
Query: 119 ARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSC 178
+ Y Y P+ ++ FL GTH+F F+ +D
Sbjct: 103 TKVYRYYLPSLGMNIK-------KMKECSLLFL--------GTHDFSAFSR----VDGRD 143
Query: 179 SRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFG 238
+ I S D + + K ++ ++I+G+SF+ +R++V + ++G +++ I +
Sbjct: 144 T--IRSIDRIEIWEK--CNVVVVEIEGKSFLWEMVRRIVSALVLCSQGVLAEERIVEMLN 199
Query: 239 LDQFD----LPMAPGLGLLLEQVHYD 260
+F+ +P AP GLLL + Y+
Sbjct: 200 -GKFEKSRKVPPAPPEGLLLWDIKYE 224
>gi|51246208|ref|YP_066092.1| tRNA pseudouridine synthase A [Desulfotalea psychrophila LSv54]
gi|62901427|sp|Q6AKP0.1|TRUA2_DESPS RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I 2; AltName: Full=tRNA-uridine
isomerase I 2
gi|50877245|emb|CAG37085.1| related to tRNA pseudouridine synthase A [Desulfotalea psychrophila
LSv54]
Length = 261
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 114/274 (41%), Gaps = 45/274 (16%)
Query: 5 FAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRA 64
AY G YFG Q++ + L ++ T+EG I+ AL K Q A
Sbjct: 8 IAYKGTHYFGWQAQSIDTL----HEEKPTVEGTILNALKK--------ITNYQPCTVSGA 55
Query: 65 ARTDKGVSALKQI----VSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNAR 120
+RTD GV A QI +S K+ E +N LP IRIL TK + + ++
Sbjct: 56 SRTDGGVHARGQIAKITISQKISPEHLLLGLNSLLPTDIRILECVPSTKEYQASRGSVSK 115
Query: 121 TYSYTCPTYAFATPQD--TKDDFRL-------TPDQFNFLQALLKQYEGTHNFHNFTSKR 171
Y Y Y A+P D D L PD L++ + + G H+F+NF+S+
Sbjct: 116 EYHY----YFIASPVDNVATSDIALHLPIDSIGPDDLALLRSACRLFVGRHDFYNFSSR- 170
Query: 172 KPLDPSCSRYIMSFDCE------QPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIAR 225
S + + F C+ P D + LKI G F+ + IR ++G + + R
Sbjct: 171 ----GSGTSFREIFYCDIHRANFSPLAND---MFYLKIIGDGFLKYMIRYIMGALLELVR 223
Query: 226 GFTSKDLIEKTFGLDQFD--LPMAPGLGLLLEQV 257
G D I Q D P A GL L ++
Sbjct: 224 GRIVLDDISLYLQQHQEDKLSPRAKAKGLHLIRI 257
>gi|417694487|ref|ZP_12343674.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47901]
gi|332201036|gb|EGJ15107.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47901]
Length = 249
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 105/249 (42%), Gaps = 25/249 (10%)
Query: 22 FLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLK 81
F F R ++++ +I + L + N Q I A RTD GV AL Q++
Sbjct: 15 FAGFQRQPHARSVQEEIEKTLTR--------LNKGQAITVHGAGRTDSGVHALGQVIHFD 66
Query: 82 LPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDT 137
LP + ++E A++ PE I ++SI+ V F+ + +++TY + P++
Sbjct: 67 LPYQMDEEKLRFALDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFILDR---GRPKNP 123
Query: 138 KDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVK 193
T P +Q +K+ EGTH+F FT+ S + + V
Sbjct: 124 MRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTAS----GTSVEDKVRTITEASLIVD 179
Query: 194 DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD--QFDLPMAPGLG 251
+ + +T G F+ QIR MVG + I + I+ Q P A G
Sbjct: 180 ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPNG 239
Query: 252 LLLEQVHYD 260
L L+++ Y+
Sbjct: 240 LYLKEIRYE 248
>gi|406577302|ref|ZP_11052916.1| tRNA pseudouridine synthase A [Streptococcus sp. GMD6S]
gi|404460147|gb|EKA06428.1| tRNA pseudouridine synthase A [Streptococcus sp. GMD6S]
Length = 249
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 105/249 (42%), Gaps = 25/249 (10%)
Query: 22 FLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLK 81
F F R ++++ +I + L + N Q I A RTD GV AL Q++
Sbjct: 15 FAGFQRQPHARSVQEEIEKTLMR--------LNKGQAIAVHGAGRTDSGVHALGQVIHFD 66
Query: 82 LPEEANKE----AINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDT 137
LP + ++E A++ PE I ++SI+ V F+ + +++TY + P++
Sbjct: 67 LPYQMDEEKLRFALDTQSPEDIDVISIEIVADDFHCRYAKHSKTYEFIVDR---GRPKNP 123
Query: 138 KDDFRLT----PDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVK 193
T P +Q +K+ EGTH+F FT+ S + + V
Sbjct: 124 MRRHYATHFPYPLDVERMQIAVKKLEGTHDFTGFTAS----GTSVEDKVRTITEASLTVD 179
Query: 194 DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD--QFDLPMAPGLG 251
+ + +T G F+ QIR MVG + I + I+ Q P A G
Sbjct: 180 ETGQFLTFSFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPNG 239
Query: 252 LLLEQVHYD 260
L L+++ Y+
Sbjct: 240 LYLKEIRYE 248
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,955,020,955
Number of Sequences: 23463169
Number of extensions: 248683262
Number of successful extensions: 886501
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 3902
Number of HSP's that attempted gapping in prelim test: 879304
Number of HSP's gapped (non-prelim): 5492
length of query: 375
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 231
effective length of database: 8,980,499,031
effective search space: 2074495276161
effective search space used: 2074495276161
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 78 (34.7 bits)