Your job contains 1 sequence.
>psy12402
MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ
FQRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNAR
TYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSR
YIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD
QFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE
ITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEEDEEDRGGVRHSNGTS
LAPKPTPAVEKETNR
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy12402
(375 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0038811 - symbol:CG4159 species:7227 "Drosophila m... 816 2.5e-81 1
UNIPROTKB|F1NZ90 - symbol:PUS1 "tRNA pseudouridine syntha... 791 1.1e-78 1
RGD|1311871 - symbol:Pus1 "pseudouridylate synthase 1" sp... 778 2.7e-77 1
UNIPROTKB|Q4KM92 - symbol:Pus1 "tRNA pseudouridine syntha... 778 2.7e-77 1
UNIPROTKB|G8JLB3 - symbol:PUS1 "tRNA pseudouridine syntha... 777 3.4e-77 1
UNIPROTKB|Q9Y606 - symbol:PUS1 "tRNA pseudouridine syntha... 777 3.4e-77 1
MGI|MGI:1929237 - symbol:Pus1 "pseudouridine synthase 1" ... 777 3.4e-77 1
ZFIN|ZDB-GENE-041212-26 - symbol:pus1 "pseudouridine synt... 773 9.0e-77 1
UNIPROTKB|F1RFR2 - symbol:PUS1 "tRNA pseudouridine syntha... 768 3.1e-76 1
UNIPROTKB|E1BDL3 - symbol:PUS1 "tRNA pseudouridine syntha... 767 3.9e-76 1
UNIPROTKB|F5H1S9 - symbol:PUS1 "tRNA pseudouridine syntha... 766 5.0e-76 1
UNIPROTKB|E2QW32 - symbol:PUS1 "tRNA pseudouridine syntha... 750 2.5e-74 1
UNIPROTKB|J9NVH5 - symbol:PUS1 "tRNA pseudouridine syntha... 750 2.5e-74 1
WB|WBGene00004248 - symbol:pus-1 species:6239 "Caenorhabd... 612 1.0e-59 1
TAIR|locus:2012898 - symbol:AT1G20370 species:3702 "Arabi... 329 4.0e-54 2
POMBASE|SPCC126.03 - symbol:pus1 "tRNA pseudouridine synt... 272 1.6e-47 2
DICTYBASE|DDB_G0290987 - symbol:pus1 "tRNA pseudouridylat... 273 2.7e-46 2
SGD|S000006133 - symbol:PUS1 "tRNA:pseudouridine synthase... 277 3.5e-45 2
POMBASE|SPBC887.11 - symbol:pus2 "tRNA pseudouridine synt... 289 4.9e-45 2
UNIPROTKB|G4N3B4 - symbol:MGG_07663 "tRNA pseudouridine s... 275 8.7e-44 3
ASPGD|ASPL0000001573 - symbol:AN6165 species:162425 "Emer... 288 1.2e-43 2
SGD|S000003031 - symbol:PUS2 "Mitochondrial tRNA:pseudour... 219 1.4e-34 2
TAIR|locus:2065748 - symbol:AT2G30320 species:3702 "Arabi... 229 2.0e-29 2
POMBASE|SPCC16C4.06c - symbol:SPCC16C4.06c "tRNA pseudour... 205 8.3e-28 2
TAIR|locus:2199726 - symbol:AT1G76120 species:3702 "Arabi... 289 3.7e-25 1
UNIPROTKB|F5GXL3 - symbol:PUS1 "tRNA pseudouridine syntha... 208 1.3e-16 1
DICTYBASE|DDB_G0281619 - symbol:DDB_G0281619 "tRNA pseudo... 175 1.7e-16 2
DICTYBASE|DDB_G0286567 - symbol:DDB_G0286567 species:4468... 170 2.5e-16 2
UNIPROTKB|F5GY32 - symbol:PUS1 "tRNA pseudouridine syntha... 181 1.4e-13 1
POMBASE|SPAC25B8.05 - symbol:SPAC25B8.05 "tRNA-pseudourid... 198 3.2e-13 1
UNIPROTKB|F1P3X5 - symbol:PUS3 "tRNA pseudouridine syntha... 127 2.5e-11 2
UNIPROTKB|F1S759 - symbol:LOC100739830 "tRNA pseudouridin... 177 9.7e-11 1
ZFIN|ZDB-GENE-030131-9433 - symbol:pus3 "pseudouridylate ... 136 1.6e-10 2
TIGR_CMR|DET_0504 - symbol:DET_0504 "tRNA pseudouridine s... 165 2.1e-10 1
UNIPROTKB|F1RVF1 - symbol:LOC100739830 "tRNA pseudouridin... 168 1.0e-09 1
UNIPROTKB|E2RGS6 - symbol:PUS3 "tRNA pseudouridine syntha... 167 1.3e-09 1
UNIPROTKB|Q9BZE2 - symbol:PUS3 "tRNA pseudouridine(38/39)... 166 1.7e-09 1
UNIPROTKB|E1BUI0 - symbol:PUSL1 "tRNA pseudouridine synth... 161 1.7e-09 1
WB|WBGene00006473 - symbol:tag-124 species:6239 "Caenorha... 124 3.8e-09 2
RGD|1310757 - symbol:Pus3 "pseudouridylate synthase 3" sp... 162 4.9e-09 1
MGI|MGI:3047787 - symbol:Pusl1 "pseudouridylate synthase-... 157 5.3e-09 1
UNIPROTKB|F1N5P3 - symbol:PUS3 "tRNA pseudouridine syntha... 161 6.3e-09 1
UNIPROTKB|Q3SX07 - symbol:PUS3 "tRNA pseudouridine(38/39)... 161 6.3e-09 1
MGI|MGI:1914299 - symbol:Pus3 "pseudouridine synthase 3" ... 159 1.1e-08 1
TIGR_CMR|NSE_0020 - symbol:NSE_0020 "tRNA pseudouridine s... 150 1.5e-08 1
TAIR|locus:2009021 - symbol:AT1G34150 species:3702 "Arabi... 150 9.6e-08 1
UNIPROTKB|F1RJE9 - symbol:PUSL1 "tRNA pseudouridine synth... 146 1.1e-07 1
UNIPROTKB|F1PXJ5 - symbol:PUSL1 "tRNA pseudouridine synth... 143 2.6e-07 1
UNIPROTKB|J9P592 - symbol:PUSL1 "tRNA pseudouridine synth... 142 3.4e-07 1
UNIPROTKB|A6QP68 - symbol:PUSL1 "tRNA pseudouridine synth... 141 4.6e-07 1
CGD|CAL0000624 - symbol:orf19.6297 species:5476 "Candida ... 144 5.3e-07 1
ASPGD|ASPL0000040109 - symbol:AN3170 species:162425 "Emer... 80 7.3e-07 3
UNIPROTKB|P65846 - symbol:truA "tRNA pseudouridine syntha... 112 8.6e-07 2
UNIPROTKB|Q8N0Z8 - symbol:PUSL1 "tRNA pseudouridine synth... 138 9.5e-07 1
UNIPROTKB|G4MKS9 - symbol:MGG_16154 "tRNA-pseudouridine s... 89 1.1e-06 3
RGD|1559560 - symbol:Pusl1 "pseudouridylate synthase-like... 108 1.5e-06 2
SGD|S000001895 - symbol:DEG1 "tRNA:pseudouridine synthase... 132 2.6e-06 2
TIGR_CMR|APH_0502 - symbol:APH_0502 "tRNA pseudouridine s... 131 3.3e-06 1
UNIPROTKB|F5H168 - symbol:PUS1 "tRNA pseudouridine syntha... 112 5.8e-06 1
DICTYBASE|DDB_G0288909 - symbol:pus3 "tRNA pseudouridylat... 107 7.8e-06 2
TIGR_CMR|CBU_0892 - symbol:CBU_0892 "tRNA pseudouridine s... 127 1.2e-05 1
TIGR_CMR|ECH_0622 - symbol:ECH_0622 "tRNA pseudouridine s... 124 2.1e-05 1
UNIPROTKB|F8W9U5 - symbol:PUS1 "tRNA pseudouridine syntha... 109 9.8e-05 1
TIGR_CMR|GSU_2877 - symbol:GSU_2877 "tRNA pseudouridine s... 118 0.00011 1
TAIR|locus:2077552 - symbol:AT3G06950 species:3702 "Arabi... 120 0.00012 1
UNIPROTKB|F1LXZ7 - symbol:Pusl1 "tRNA pseudouridine synth... 114 0.00022 1
UNIPROTKB|F5H1B2 - symbol:PUS1 "tRNA pseudouridine syntha... 109 0.00044 1
UNIPROTKB|J3KTG4 - symbol:PUSL1 "tRNA pseudouridine synth... 94 0.00053 1
TIGR_CMR|CHY_2276 - symbol:CHY_2276 "tRNA pseudouridine s... 112 0.00054 1
TIGR_CMR|SPO_3143 - symbol:SPO_3143 "tRNA pseudouridine s... 111 0.00082 1
>FB|FBgn0038811 [details] [associations]
symbol:CG4159 species:7227 "Drosophila melanogaster"
[GO:0004730 "pseudouridylate synthase activity" evidence=ISS]
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 EMBL:AE014297 GO:GO:0003723 GO:GO:0008033
GO:GO:0016829 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706 OMA:CDARTYF
RefSeq:NP_001163664.1 UniGene:Dm.27944 ProteinModelPortal:E1JIR1
SMR:E1JIR1 EnsemblMetazoa:FBtr0302323 GeneID:42440
KEGG:dme:Dmel_CG4159 FlyBase:FBgn0038811 PhylomeDB:E1JIR1
GenomeRNAi:42440 NextBio:828799 Bgee:E1JIR1 Uniprot:E1JIR1
Length = 442
Score = 816 (292.3 bits), Expect = 2.5e-81, P = 2.5e-81
Identities = 163/325 (50%), Positives = 222/325 (68%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
A++ +Y G Y+G+Q RN GM+TIE ++ +A+ K ++TEDSF Q F
Sbjct: 105 AILLSYCGANYYGMQ----------RNPGMQTIEEELFKAMLKHKWITEDSFEQIQISCF 154
Query: 62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
QRAARTDKGVSA +Q+ S+KLPEE + EA N LP+QIR+ ++RVTKGFN+K+ CNART
Sbjct: 155 QRAARTDKGVSAARQVCSVKLPEELDLEAFNADLPQQIRLFGVERVTKGFNAKDQCNART 214
Query: 122 YSYTCPTYAFATPQDTKDD----FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPS 177
Y+YT PT AFA ++ DD FR++P+ ++ LK YEGT NFHNFTSK+ LDPS
Sbjct: 215 YTYTLPTVAFAPFEEKVDDVHDTFRISPELLQKVKETLKLYEGTKNFHNFTSKKSFLDPS 274
Query: 178 CSRYIMSFDCEQPFVK-DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKT 236
R+IMSF +PF +E +TLK+KGQSFMLHQIRKMVG+A+AI RG T+ +E+
Sbjct: 275 SKRFIMSFTSSEPFRSPQDIEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTAATLERA 334
Query: 237 FGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYL 296
++ DLPMAPGLGL+L+ VHY+ YN +YG+DG+H L + + +V EF + I +
Sbjct: 335 LTEERLDLPMAPGLGLVLDTVHYERYNDRYGKDGIHNPLTWQAQEAQVQEFIEREIFSQI 394
Query: 297 VKTEITEKPMLAWLELLADHSFETR 321
KTE ++ ML W+ L HS++TR
Sbjct: 395 YKTEAEQRNMLDWIGTLHYHSYDTR 419
>UNIPROTKB|F1NZ90 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0005730
GO:GO:0003677 GO:GO:0045944 GO:GO:0003723 GO:GO:0005667
GO:GO:0030374 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706 OMA:CDARTYF
EMBL:AADN02034827 IPI:IPI00587879 Ensembl:ENSGALT00000003714
Uniprot:F1NZ90
Length = 405
Score = 791 (283.5 bits), Expect = 1.1e-78, P = 1.1e-78
Identities = 153/326 (46%), Positives = 224/326 (68%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 62 IVLLMAYSGKGYHGMQ----------RNLGSSQFKTIEDDLVSALVRSGCIPENHGEDMK 111
Query: 58 NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
+ FQR ARTDKGVSA QIVSLK+ + E IN HLP IRIL +KRVT GFNSKN
Sbjct: 112 KMSFQRCARTDKGVSAAGQIVSLKVRLIDDILEKINNHLPSHIRILGLKRVTGGFNSKNK 171
Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ARTY+Y PT+AFA D +++ RL+ + + +LL +Y+GTHNFHNFTS++ P
Sbjct: 172 CDARTYAYMLPTFAFAHKDHDVQEEAHRLSRETLEKVNSLLARYKGTHNFHNFTSQKGPK 231
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
DPS RYIM C +PFV++G+E +K+KGQSFM+HQIRKM+G+ +AI +G+ + +IE
Sbjct: 232 DPSARRYIMEMYCGEPFVREGIEFAVIKVKGQSFMMHQIRKMIGLVIAIVKGYAPESIIE 291
Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
+++G ++ D+P APGLGL+LE+VH++ YN+++G DG+HE L + E ++++ F+ ++I P
Sbjct: 292 RSWGEEKVDVPKAPGLGLVLERVHFEKYNRRFGNDGLHEPLEWKEEEEKIAVFKEQYIYP 351
Query: 295 YLVKTEITEKPMLAWLELLADHSFET 320
++ TE EK M++WL L+ H F +
Sbjct: 352 TIINTEREEKSMMSWLNTLSIHDFNS 377
>RGD|1311871 [details] [associations]
symbol:Pus1 "pseudouridylate synthase 1" species:10116 "Rattus
norvegicus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA;ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005667 "transcription factor complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0008152 "metabolic process" evidence=ISO]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;ISO]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=IEA;ISO] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IEA;ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 RGD:1311871 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
eggNOG:COG0101 KO:K06173 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706
CTD:80324 HOGENOM:HOG000031229 HOVERGEN:HBG000489 EMBL:AC095390
IPI:IPI00190104 RefSeq:NP_001020734.1 UniGene:Rn.11475
ProteinModelPortal:Q4KM92 STRING:Q4KM92 Ensembl:ENSRNOT00000056780
GeneID:304567 KEGG:rno:304567 UCSC:RGD:1311871 NextBio:653267
ArrayExpress:Q4KM92 Genevestigator:Q4KM92
GermOnline:ENSRNOG00000037500 Uniprot:Q4KM92
Length = 423
Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
Identities = 154/325 (47%), Positives = 221/325 (68%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G +TIE D++ AL +AG + E+ +
Sbjct: 82 IVLLMAYSGKGYHGMQ----------RNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMR 131
Query: 58 NIQFQRAARTDKGVSALKQIVSLK--LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKN 115
+ FQR ARTDKGVSA Q+VSLK L ++ + IN HLP IRIL +KRVT GFNSKN
Sbjct: 132 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDI-LDKINSHLPSHIRILGLKRVTGGFNSKN 190
Query: 116 NCNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKP 173
C+ARTY Y PT+AFA +D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P
Sbjct: 191 KCDARTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLGCYKGTHNFHNFTSQKGP 250
Query: 174 LDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLI 233
+PS RYI+ CE+PFV++GLE +K+KGQSFM+HQIRKMVG+ +AI +G+ + ++
Sbjct: 251 REPSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVL 310
Query: 234 EKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFIL 293
E+++G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V F+ ++I
Sbjct: 311 ERSWGEEKVDVPKAPGLGLVLERVHFEKYNQRFGSDGLHEPLDWAQEEGKVTAFKEQYIY 370
Query: 294 PYLVKTEITEKPMLAWLELLADHSF 318
P +V TE E+ M WL L H+F
Sbjct: 371 PTIVSTERDERSMAQWLNTLPIHNF 395
>UNIPROTKB|Q4KM92 [details] [associations]
symbol:Pus1 "tRNA pseudouridine synthase A, mitochondrial"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 RGD:1311871 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
eggNOG:COG0101 KO:K06173 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706
CTD:80324 HOGENOM:HOG000031229 HOVERGEN:HBG000489 EMBL:AC095390
IPI:IPI00190104 RefSeq:NP_001020734.1 UniGene:Rn.11475
ProteinModelPortal:Q4KM92 STRING:Q4KM92 Ensembl:ENSRNOT00000056780
GeneID:304567 KEGG:rno:304567 UCSC:RGD:1311871 NextBio:653267
ArrayExpress:Q4KM92 Genevestigator:Q4KM92
GermOnline:ENSRNOG00000037500 Uniprot:Q4KM92
Length = 423
Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
Identities = 154/325 (47%), Positives = 221/325 (68%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G +TIE D++ AL +AG + E+ +
Sbjct: 82 IVLLMAYSGKGYHGMQ----------RNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMR 131
Query: 58 NIQFQRAARTDKGVSALKQIVSLK--LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKN 115
+ FQR ARTDKGVSA Q+VSLK L ++ + IN HLP IRIL +KRVT GFNSKN
Sbjct: 132 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDI-LDKINSHLPSHIRILGLKRVTGGFNSKN 190
Query: 116 NCNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKP 173
C+ARTY Y PT+AFA +D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P
Sbjct: 191 KCDARTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLGCYKGTHNFHNFTSQKGP 250
Query: 174 LDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLI 233
+PS RYI+ CE+PFV++GLE +K+KGQSFM+HQIRKMVG+ +AI +G+ + ++
Sbjct: 251 REPSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVL 310
Query: 234 EKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFIL 293
E+++G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V F+ ++I
Sbjct: 311 ERSWGEEKVDVPKAPGLGLVLERVHFEKYNQRFGSDGLHEPLDWAQEEGKVTAFKEQYIY 370
Query: 294 PYLVKTEITEKPMLAWLELLADHSF 318
P +V TE E+ M WL L H+F
Sbjct: 371 PTIVSTERDERSMAQWLNTLPIHNF 395
>UNIPROTKB|G8JLB3 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0005730
GO:GO:0003677 GO:GO:0045944 GO:GO:0003723 GO:GO:0005667
GO:GO:0030374 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119
EMBL:AC131009 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 HGNC:HGNC:15508 ChiTaRS:PUS1
ProteinModelPortal:G8JLB3 SMR:G8JLB3 PRIDE:G8JLB3
Ensembl:ENST00000322060 Bgee:G8JLB3 Uniprot:G8JLB3
Length = 384
Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
Identities = 154/325 (47%), Positives = 220/325 (67%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 58 IVLLMAYSGKGYHGMQ----------RNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMR 107
Query: 58 NIQFQRAARTDKGVSALKQIVSLK--LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKN 115
+ FQR ARTDKGVSA Q+VSLK L ++ E IN HLP IRIL +KRVT GFNSKN
Sbjct: 108 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDI-LEKINSHLPSHIRILGLKRVTGGFNSKN 166
Query: 116 NCNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKP 173
C+ARTY Y PT+AFA +D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P
Sbjct: 167 RCDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGP 226
Query: 174 LDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLI 233
DPS RYI+ CE+PFV++GLE +++KGQSFM+HQIRKMVG+ +AI +G+ + ++
Sbjct: 227 QDPSACRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVL 286
Query: 234 EKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFIL 293
E+++G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V F+ + I
Sbjct: 287 ERSWGTEKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWAQEEGKVAAFKEEHIY 346
Query: 294 PYLVKTEITEKPMLAWLELLADHSF 318
P ++ TE E+ M WL L H+F
Sbjct: 347 PTIIGTERDERSMAQWLSTLPIHNF 371
>UNIPROTKB|Q9Y606 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase A, mitochondrial"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005667 "transcription
factor complex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0004730
"pseudouridylate synthase activity" evidence=NAS] [GO:0008033 "tRNA
processing" evidence=NAS] [GO:0005634 "nucleus" evidence=NAS]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0005739
GO:GO:0005634 GO:GO:0005730 GO:GO:0003677 GO:GO:0045944
GO:GO:0003723 GO:GO:0005667 GO:GO:0008033 GO:GO:0030374
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0004730 GO:GO:0031119
BRENDA:5.4.99.12 eggNOG:COG0101 KO:K06173 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
Orphanet:2598 EMBL:AF318369 EMBL:AK074659 EMBL:AK292242
EMBL:BC002901 EMBL:BC009505 EMBL:BC019320 EMBL:AF116238
IPI:IPI00001716 IPI:IPI00619930 RefSeq:NP_001002019.1
RefSeq:NP_001002020.1 RefSeq:NP_079491.2 UniGene:Hs.592004
ProteinModelPortal:Q9Y606 SMR:Q9Y606 STRING:Q9Y606
PhosphoSite:Q9Y606 DMDM:114152895 PaxDb:Q9Y606 PRIDE:Q9Y606
DNASU:80324 Ensembl:ENST00000376649 Ensembl:ENST00000440818
Ensembl:ENST00000443358 GeneID:80324 KEGG:hsa:80324 UCSC:uc001ujf.3
CTD:80324 GeneCards:GC12P132413 HGNC:HGNC:15508 HPA:HPA051636
MIM:600462 MIM:608109 neXtProt:NX_Q9Y606 PharmGKB:PA34047
HOGENOM:HOG000031229 HOVERGEN:HBG000489 InParanoid:Q9Y606
OMA:CDARTYF OrthoDB:EOG4QRH44 ChiTaRS:PUS1 GenomeRNAi:80324
NextBio:70847 ArrayExpress:Q9Y606 Bgee:Q9Y606 CleanEx:HS_PUS1
Genevestigator:Q9Y606 GermOnline:ENSG00000177192 Uniprot:Q9Y606
Length = 427
Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
Identities = 154/325 (47%), Positives = 220/325 (67%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 86 IVLLMAYSGKGYHGMQ----------RNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMR 135
Query: 58 NIQFQRAARTDKGVSALKQIVSLK--LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKN 115
+ FQR ARTDKGVSA Q+VSLK L ++ E IN HLP IRIL +KRVT GFNSKN
Sbjct: 136 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDI-LEKINSHLPSHIRILGLKRVTGGFNSKN 194
Query: 116 NCNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKP 173
C+ARTY Y PT+AFA +D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P
Sbjct: 195 RCDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGP 254
Query: 174 LDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLI 233
DPS RYI+ CE+PFV++GLE +++KGQSFM+HQIRKMVG+ +AI +G+ + ++
Sbjct: 255 QDPSACRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVL 314
Query: 234 EKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFIL 293
E+++G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V F+ + I
Sbjct: 315 ERSWGTEKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWAQEEGKVAAFKEEHIY 374
Query: 294 PYLVKTEITEKPMLAWLELLADHSF 318
P ++ TE E+ M WL L H+F
Sbjct: 375 PTIIGTERDERSMAQWLSTLPIHNF 399
>MGI|MGI:1929237 [details] [associations]
symbol:Pus1 "pseudouridine synthase 1" species:10090 "Mus
musculus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005667 "transcription
factor complex" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0008152 "metabolic process"
evidence=IMP] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IDA;IMP]
[GO:0016853 "isomerase activity" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IDA] [GO:0031119 "tRNA pseudouridine synthesis"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 MGI:MGI:1929237 GO:GO:0005739
GO:GO:0005730 GO:GO:0003677 GO:GO:0045944 GO:GO:0003723
GO:GO:0005667 GO:GO:0030374 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031119 BRENDA:5.4.99.12 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706 CTD:80324
HOVERGEN:HBG000489 OrthoDB:EOG4QRH44 EMBL:AF116237 EMBL:AF269250
EMBL:AB041563 EMBL:AK089258 EMBL:AK138570 EMBL:BC021446
EMBL:BC034359 IPI:IPI00123912 IPI:IPI00621502 IPI:IPI00623093
IPI:IPI00653171 RefSeq:NP_001020733.1 RefSeq:NP_062674.2
UniGene:Mm.23528 ProteinModelPortal:Q9WU56 SMR:Q9WU56 STRING:Q9WU56
PhosphoSite:Q9WU56 PRIDE:Q9WU56 DNASU:56361
Ensembl:ENSMUST00000031481 Ensembl:ENSMUST00000031483
Ensembl:ENSMUST00000112426 Ensembl:ENSMUST00000170468 GeneID:56361
KEGG:mmu:56361 UCSC:uc008yrm.1 UCSC:uc008yrn.1 UCSC:uc008yro.1
UCSC:uc008yrp.1 NextBio:312382 Bgee:Q9WU56 CleanEx:MM_PUS1
Genevestigator:Q9WU56 GermOnline:ENSMUSG00000029507 Uniprot:Q9WU56
Length = 423
Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
Identities = 154/325 (47%), Positives = 221/325 (68%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G +TIE D++ AL +AG + E+ +
Sbjct: 82 IVLLMAYSGKGYHGMQ----------RNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMR 131
Query: 58 NIQFQRAARTDKGVSALKQIVSLK--LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKN 115
+ FQR ARTDKGVSA Q+VSLK L ++ + IN HLP IRIL +KRVT GFNSKN
Sbjct: 132 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDI-LDKINSHLPSHIRILGLKRVTGGFNSKN 190
Query: 116 NCNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKP 173
C+ARTY Y PT+AFA +D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P
Sbjct: 191 KCDARTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGP 250
Query: 174 LDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLI 233
+PS RYI+ CE+PFV++GLE +K+KGQSFM+HQIRKMVG+ +AI +G+ + ++
Sbjct: 251 REPSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVL 310
Query: 234 EKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFIL 293
E+++G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V F+ ++I
Sbjct: 311 ERSWGEEKVDVPKAPGLGLVLERVHFEKYNQRFGGDGLHEPLDWTQEEGKVTAFKEQYIY 370
Query: 294 PYLVKTEITEKPMLAWLELLADHSF 318
P +V TE E+ M WL L H+F
Sbjct: 371 PTIVSTERDERSMAQWLNTLPIHNF 395
>ZFIN|ZDB-GENE-041212-26 [details] [associations]
symbol:pus1 "pseudouridine synthase 1" species:7955
"Danio rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0009451
"RNA modification" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0016853 "isomerase activity" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 ZFIN:ZDB-GENE-041212-26
GO:GO:0003723 GO:GO:0008033 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706
EMBL:CR450803 IPI:IPI00502878 Ensembl:ENSDART00000144859
Bgee:F1QWW1 Uniprot:F1QWW1
Length = 412
Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
Identities = 153/323 (47%), Positives = 216/323 (66%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ AYSG GY+G+Q RN KTIE +++ AL A + E + +
Sbjct: 78 VALLMAYSGKGYYGMQRN-------ARNSQFKTIEDELVTALVGARCIPEGHAEEMKKMS 130
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEAN-KEAINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
FQR+ARTDKGVSA+ Q+VSLK+ N E IN HLP QIR+L KRVT GFNSKNNC A
Sbjct: 131 FQRSARTDKGVSAVGQVVSLKVWMIENILEKINAHLPPQIRVLGCKRVTGGFNSKNNCYA 190
Query: 120 RTYSYTCPTYAFATPQD-TKDD--FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDP 176
RTYSY PT AF+ P+D ++D FRLT D + L Y+GTHNFHNFTS++ DP
Sbjct: 191 RTYSYMLPTVAFS-PKDYNQEDTSFRLTSDTLQTVNRLFGLYKGTHNFHNFTSQKGHRDP 249
Query: 177 SCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKT 236
S RYI C +PF++ +E + ++GQSFM+HQIRKM+G+ +A+ +G+ + +IEK+
Sbjct: 250 SAMRYITHMSCGEPFIRKDVEFAVITVRGQSFMMHQIRKMIGLVIAVVKGYVDEGVIEKS 309
Query: 237 FGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYL 296
+G ++ +P APGLGL+LE+VH+D YN+++G DG+HE+L + E ++ + +F+ K I P +
Sbjct: 310 WGEEKVGVPKAPGLGLVLERVHFDGYNKRFGGDGIHETLEWTEQEEAIADFKEKHIYPTI 369
Query: 297 VKTEITEKPMLAWLELLADHSFE 319
V TE+ EK M+ W+ L H FE
Sbjct: 370 VDTELNEKSMVNWMTSLCIHDFE 392
>UNIPROTKB|F1RFR2 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0005730 GO:GO:0003677 GO:GO:0045944
GO:GO:0003723 GO:GO:0005667 GO:GO:0030374 GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0031119 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706
OMA:CDARTYF EMBL:CU469318 Ensembl:ENSSSCT00000010680 Uniprot:F1RFR2
Length = 433
Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
Identities = 155/325 (47%), Positives = 216/325 (66%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 92 IVLLMAYSGKGYHGMQ----------RNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMR 141
Query: 58 NIQFQRAARTDKGVSALKQIVSLK--LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKN 115
+ FQR ARTDKGVSA Q+VSLK L ++ E IN HLP IRIL +KRVT GFNSKN
Sbjct: 142 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDI-LEKINSHLPSHIRILGLKRVTGGFNSKN 200
Query: 116 NCNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKP 173
C+ARTY Y PT+AFA D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P
Sbjct: 201 KCDARTYFYMLPTFAFAHKDHDVQDETYRLSTETLQRVNRLLACYKGTHNFHNFTSQKGP 260
Query: 174 LDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLI 233
+PS RYI+ CE+PFV++G+E +K+KGQSFM HQIRKMVG+ +AI +G+ + ++
Sbjct: 261 REPSARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLVVAIIKGYAPESVL 320
Query: 234 EKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFIL 293
E+++G + D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + EV F+ + I
Sbjct: 321 ERSWGEAKVDVPKAPGLGLVLERVHFEKYNQRFGHDGVHEPLDWAREEAEVMAFKEQHIY 380
Query: 294 PYLVKTEITEKPMLAWLELLADHSF 318
P ++ TE EK M WL L H+F
Sbjct: 381 PTIISTERHEKSMAQWLSTLPMHNF 405
>UNIPROTKB|E1BDL3 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9913 "Bos
taurus" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0005730 GO:GO:0003677 GO:GO:0045944
GO:GO:0003723 GO:GO:0005667 GO:GO:0030374 GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0031119 KO:K06173 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
GeneTree:ENSGT00510000047706 CTD:80324 OMA:CDARTYF
EMBL:DAAA02044957 IPI:IPI00698653 RefSeq:XP_002694500.1
RefSeq:XP_593895.2 UniGene:Bt.7818 Ensembl:ENSBTAT00000017270
GeneID:515808 KEGG:bta:515808 NextBio:20872010 Uniprot:E1BDL3
Length = 433
Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
Identities = 154/325 (47%), Positives = 215/325 (66%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 92 IVLLMAYSGKGYHGMQ----------RNVGSSKFKTIEDDLVSALVRSGCIPENHGEDMR 141
Query: 58 NIQFQRAARTDKGVSALKQIVSLK--LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKN 115
+ FQR ARTDKGVSA Q+VSLK L ++ E IN HLP IRIL +KRVT GFNSKN
Sbjct: 142 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDI-LEKINSHLPSHIRILGLKRVTGGFNSKN 200
Query: 116 NCNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKP 173
C+ARTY Y PT+AFA D++D+ +RL+ + + LL Y+GTHNFHNFTS++ P
Sbjct: 201 KCDARTYVYMLPTFAFAHKDHDSQDETYRLSAETLGRVNRLLACYKGTHNFHNFTSQKGP 260
Query: 174 LDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLI 233
+PS RYI+ CE+PFV++G+E +K+KGQSFM HQIRKMVG+ +AI +G+ + ++
Sbjct: 261 HEPSARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLVVAIVKGYAPESVL 320
Query: 234 EKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFIL 293
E+ +G + D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + EV F+ + I
Sbjct: 321 ERCWGEAKVDVPKAPGLGLVLERVHFEKYNQRFGHDGLHEPLDWAREEAEVTAFKEQHIY 380
Query: 294 PYLVKTEITEKPMLAWLELLADHSF 318
P ++ TE E+ M WL L H F
Sbjct: 381 PTIISTERQERSMAQWLSTLPMHDF 405
>UNIPROTKB|F5H1S9 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9606
"Homo sapiens" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:AC131009 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 HGNC:HGNC:15508 ChiTaRS:PUS1
IPI:IPI00795171 ProteinModelPortal:F5H1S9 SMR:F5H1S9 PRIDE:F5H1S9
Ensembl:ENST00000542167 UCSC:uc001uji.3 ArrayExpress:F5H1S9
Bgee:F5H1S9 Uniprot:F5H1S9
Length = 374
Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
Identities = 151/312 (48%), Positives = 215/312 (68%)
Query: 15 LQS-KYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKG 70
LQ+ K +F F RN G KTIE D++ AL ++G + E+ + + FQR ARTDKG
Sbjct: 36 LQNIKSVFVSFFQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTDKG 95
Query: 71 VSALKQIVSLK--LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPT 128
VSA Q+VSLK L ++ E IN HLP IRIL +KRVT GFNSKN C+ARTY Y PT
Sbjct: 96 VSAAGQVVSLKVWLIDDI-LEKINSHLPSHIRILGLKRVTGGFNSKNRCDARTYCYLLPT 154
Query: 129 YAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFD 186
+AFA +D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P DPS RYI+
Sbjct: 155 FAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQDPSACRYILEMY 214
Query: 187 CEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPM 246
CE+PFV++GLE +++KGQSFM+HQIRKMVG+ +AI +G+ + ++E+++G ++ D+P
Sbjct: 215 CEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGTEKVDVPK 274
Query: 247 APGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPM 306
APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V F+ + I P ++ TE E+ M
Sbjct: 275 APGLGLVLERVHFEKYNQRFGNDGLHEPLDWAQEEGKVAAFKEEHIYPTIIGTERDERSM 334
Query: 307 LAWLELLADHSF 318
WL L H+F
Sbjct: 335 AQWLSTLPIHNF 346
>UNIPROTKB|E2QW32 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9615
"Canis lupus familiaris" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
GeneTree:ENSGT00510000047706 OMA:CDARTYF EMBL:AAEX03014587
Ensembl:ENSCAFT00000010378 Uniprot:E2QW32
Length = 438
Score = 750 (269.1 bits), Expect = 2.5e-74, P = 2.5e-74
Identities = 152/325 (46%), Positives = 213/325 (65%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 96 IVLLMAYSGKGYHGMQ----------RNVGSSQFKTIEDDLVSALVQSGCIPENHGEDMR 145
Query: 58 NIQFQRAARTDKGVSALKQIVSLK--LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKN 115
+ FQR ARTDKGVSA Q+VSLK L ++ E IN HLP IRIL +KRVT GFNSKN
Sbjct: 146 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDI-LEKINSHLPPHIRILGLKRVTGGFNSKN 204
Query: 116 NCNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKP 173
C+ARTY Y PT+AFA D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P
Sbjct: 205 KCDARTYFYMLPTFAFAHKDHDVQDESYRLSAETLQRVNGLLACYKGTHNFHNFTSQKGP 264
Query: 174 LDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLI 233
+ S RYI+ CE+PFV++G+E +K+KGQSFM HQIRKMVG+ +AI +G+ + ++
Sbjct: 265 QEASARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLLVAIVKGYAPESVL 324
Query: 234 EKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFIL 293
E+++G + D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + V F+ + I
Sbjct: 325 ERSWGDAKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWTREEAGVTAFKEQHIY 384
Query: 294 PYLVKTEITEKPMLAWLELLADHSF 318
P ++ TE E+ M WL L H F
Sbjct: 385 PTIISTERHERSMAQWLSTLPVHDF 409
>UNIPROTKB|J9NVH5 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9615
"Canis lupus familiaris" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
GeneTree:ENSGT00510000047706 EMBL:AAEX03014587
Ensembl:ENSCAFT00000047970 Uniprot:J9NVH5
Length = 398
Score = 750 (269.1 bits), Expect = 2.5e-74, P = 2.5e-74
Identities = 152/325 (46%), Positives = 213/325 (65%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 63 IVLLMAYSGKGYHGMQ----------RNVGSSQFKTIEDDLVSALVQSGCIPENHGEDMR 112
Query: 58 NIQFQRAARTDKGVSALKQIVSLK--LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKN 115
+ FQR ARTDKGVSA Q+VSLK L ++ E IN HLP IRIL +KRVT GFNSKN
Sbjct: 113 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDI-LEKINSHLPPHIRILGLKRVTGGFNSKN 171
Query: 116 NCNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKP 173
C+ARTY Y PT+AFA D +D+ +RL+ + + LL Y+GTHNFHNFTS++ P
Sbjct: 172 KCDARTYFYMLPTFAFAHKDHDVQDESYRLSAETLQRVNGLLACYKGTHNFHNFTSQKGP 231
Query: 174 LDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLI 233
+ S RYI+ CE+PFV++G+E +K+KGQSFM HQIRKMVG+ +AI +G+ + ++
Sbjct: 232 QEASARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLLVAIVKGYAPESVL 291
Query: 234 EKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFIL 293
E+++G + D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + V F+ + I
Sbjct: 292 ERSWGDAKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWTREEAGVTAFKEQHIY 351
Query: 294 PYLVKTEITEKPMLAWLELLADHSF 318
P ++ TE E+ M WL L H F
Sbjct: 352 PTIISTERHERSMAQWLSTLPVHDF 376
>WB|WBGene00004248 [details] [associations]
symbol:pus-1 species:6239 "Caenorhabditis elegans"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:AL021572 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706
HOGENOM:HOG000031229 OMA:CDARTYF UniGene:Cel.1992 GeneID:180123
KEGG:cel:CELE_W06H3.2 UCSC:W06H3.2a CTD:180123 NextBio:908172
PIR:T26253 RefSeq:NP_507242.1 ProteinModelPortal:Q9XXN0 SMR:Q9XXN0
STRING:Q9XXN0 PRIDE:Q9XXN0 EnsemblMetazoa:W06H3.2a.1
EnsemblMetazoa:W06H3.2a.2 WormBase:W06H3.2a InParanoid:Q9XXN0
ArrayExpress:Q9XXN0 Uniprot:Q9XXN0
Length = 415
Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
Identities = 132/332 (39%), Positives = 203/332 (61%)
Query: 2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
AM+ Y G Y+G+Q + + + TIE ++EA+ AG++T P + F
Sbjct: 36 AMLLGYQGKKYYGMQLQ----------KDLPTIESKLLEAMETAGWITTAQKEKPFDFFF 85
Query: 62 QRAARTDKGVSALKQIVSLKLP-EEANKEA-----INEHLPEQIRILSIKRVTKGFNSKN 115
QRAARTD+ VSA +Q+ ++LP ++A +A +N LP IR+ ++R T F+ +
Sbjct: 86 QRAARTDRAVSAARQMCGMQLPRDDAKYQAEGAGILNNILPADIRVFGMRRTTNFFHPQK 145
Query: 116 NCNARTYSYTCPTYAFATPQD-TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
C+ RTYSYTCP++ FA P + T FRL+P+ + ++L Y GTHNF N+T+KR
Sbjct: 146 QCDHRTYSYTCPSFVFAKPTELTNSSFRLSPETLAEVNSILSIYLGTHNFFNYTAKRAYD 205
Query: 175 DPSCSRYIMSFDCEQPFV------KDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFT 228
D S +RYI+SF+C++PF+ K+ +E + + IKGQSF+LHQIRKMVG+ + + R
Sbjct: 206 DMSSNRYIISFECKEPFLFRDDFRKEDVEFVQIVIKGQSFVLHQIRKMVGMVITVIRELH 265
Query: 229 SKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESL-HFHEV-DKEVNE 286
K I+++F + D+PMAPGLGLLLE+ HYD Y++K + HE L + E+ +KE+
Sbjct: 266 LKSSIQRSFEGQRMDIPMAPGLGLLLERTHYDSYDRKNSKS--HEPLTDWGEIIEKEIER 323
Query: 287 FRHKFILPYLVKTEITEKPMLAWLELLADHSF 318
+ + I +++TE+ + ML WL L H F
Sbjct: 324 TKFELITKDMIETELLTQGMLKWLADLVHHDF 355
>TAIR|locus:2012898 [details] [associations]
symbol:AT1G20370 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS] [GO:0005829
"cytosol" evidence=IDA] [GO:0006333 "chromatin assembly or
disassembly" evidence=RCA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
EMBL:AC026234 eggNOG:COG0101 KO:K06173 OMA:IRKMISM
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 EMBL:AY035176 EMBL:AY059123 IPI:IPI00538439
PIR:E86337 RefSeq:NP_564112.1 UniGene:At.21336
ProteinModelPortal:Q9LN29 STRING:Q9LN29 PaxDb:Q9LN29 PRIDE:Q9LN29
EnsemblPlants:AT1G20370.1 GeneID:838625 KEGG:ath:AT1G20370
TAIR:At1g20370 HOGENOM:HOG000030790 InParanoid:Q9LN29
PhylomeDB:Q9LN29 ProtClustDB:CLSN2917029 ArrayExpress:Q9LN29
Genevestigator:Q9LN29 Uniprot:Q9LN29
Length = 549
Score = 329 (120.9 bits), Expect = 4.0e-54, Sum P(2) = 4.0e-54
Identities = 64/174 (36%), Positives = 105/174 (60%)
Query: 146 DQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKG 205
++FN +L Y G+HNFHNFT++ K DP+ +RYI+SF+ DG + + ++ G
Sbjct: 319 ERFN---RILSYYVGSHNFHNFTTRTKAADPAANRYILSFNANTVINLDGKDFVKCEVVG 375
Query: 206 QSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMAPGLGLLLEQVHYDLYNQ 264
QSFMLHQIRKM+G+A+AI R + + LIE +F D + ++PMAP +GL L++ + YN+
Sbjct: 376 QSFMLHQIRKMIGLAVAIMRNYAPESLIEASFKKDVRINVPMAPEVGLYLDECFFTSYNK 435
Query: 265 KYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSF 318
++ G HE + E + EF+ K++ ++ E + + WL L ++
Sbjct: 436 RF--KGSHEEVSMEEYKEVAEEFKWKYVYSHIGSAEEKDGAVAIWLHSLNQRNY 487
Score = 257 (95.5 bits), Expect = 4.0e-54, Sum P(2) = 4.0e-54
Identities = 58/132 (43%), Positives = 81/132 (61%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++FA+ GVGY G+Q +N G KTIEG++ EALF AG V + N P+N +
Sbjct: 60 VAIVFAFCGVGYQGMQ----------KNPGAKTIEGELEEALFHAGAVPDADRNKPRNYE 109
Query: 61 FQRAARTDKGVSALKQIVSLK--LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
+ R+ARTDKGVSA+ Q+VS + + E +N LP+QIR+ KRV F+SK C+
Sbjct: 110 WARSARTDKGVSAVGQVVSGRFYVDPPGFVERLNSKLPDQIRVFGYKRVAPSFSSKKFCD 169
Query: 119 ARTYSYTCPTYA 130
R Y Y P +A
Sbjct: 170 RRRYVYLIPVFA 181
>POMBASE|SPCC126.03 [details] [associations]
symbol:pus1 "tRNA pseudouridine synthase Lsp1"
species:4896 "Schizosaccharomyces pombe" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IGI;IDA] [GO:0006400 "tRNA
modification" evidence=IDA] [GO:0009982 "pseudouridine synthase
activity" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PomBase:SPCC126.03 GO:GO:0005634 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0003723 GO:GO:0006400
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 EMBL:AJ251329
PIR:T40907 RefSeq:NP_588446.1 ProteinModelPortal:O94396
STRING:O94396 EnsemblFungi:SPCC126.03.1 GeneID:2539082
KEGG:spo:SPCC126.03 eggNOG:COG0101 HOGENOM:HOG000213984 KO:K06173
OMA:IRKMISM OrthoDB:EOG48KVMJ NextBio:20800254 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
Uniprot:O94396
Length = 534
Score = 272 (100.8 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 55/180 (30%), Positives = 96/180 (53%)
Query: 140 DFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELI 199
++R++ D+ + ++ L QY G HNFHNFT + + +R I SF PF+ E I
Sbjct: 313 NYRISADRLSVIRETLNQYVGVHNFHNFTVGQAFHQKNSNRVIRSFTASDPFMIGDTEWI 372
Query: 200 TLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHY 259
+ K+ GQSFMLHQIRKM+ +A+ + R + I+ F + ++P PG GLLLE +
Sbjct: 373 SCKVHGQSFMLHQIRKMIALAILVVRTGCPVERIQDAFKKTKINIPKGPGFGLLLESPFF 432
Query: 260 DLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSFE 319
YN+ + + + F + ++++ F+H I + E ++ +L + ++ E
Sbjct: 433 KGYNEHKAPENNRDPIDFTKYEQKITAFKHAHIYDKIFLEEARKQVFHCFLSFIDSYNEE 492
Score = 255 (94.8 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 57/137 (41%), Positives = 75/137 (54%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A + Y G GY G+Q N KTIEGD+ +A KAG V+ + + P+ +
Sbjct: 46 VACLVGYCGSGYHGMQL----------NPPSKTIEGDLFDAFVKAGAVSSYNADDPKKVA 95
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK--EAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
RAARTDKGV A ++SLKL E K E +NEHLP IR+ + R FN + C
Sbjct: 96 LARAARTDKGVHAAGNVISLKLIMEDEKLIEKVNEHLPPSIRLWDVIRTINSFNPRTYCE 155
Query: 119 ARTYSYTCPTYAFATPQ 135
+R Y Y PTYAF P+
Sbjct: 156 SRIYEYMVPTYAFVPPK 172
>DICTYBASE|DDB_G0290987 [details] [associations]
symbol:pus1 "tRNA pseudouridylate synthase"
species:44689 "Dictyostelium discoideum" [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 dictyBase:DDB_G0290987
GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 EMBL:AAFI02000174 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 RefSeq:XP_635437.1 ProteinModelPortal:Q54FA0
EnsemblProtists:DDB0231224 GeneID:8627937 KEGG:ddi:DDB_G0290987
InParanoid:Q54FA0 OMA:VEMVSIN Uniprot:Q54FA0
Length = 596
Score = 273 (101.2 bits), Expect = 2.7e-46, Sum P(2) = 2.7e-46
Identities = 68/189 (35%), Positives = 102/189 (53%)
Query: 136 DTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDG 195
+T+ ++ T D + L +L Y G H FHN+TS+++ D S R I SF C +PFV +G
Sbjct: 289 NTQPPWKFTSDTLSILNKVLSFYLGNHRFHNYTSRKESNDVSVFRKIHSFVCSEPFVLEG 348
Query: 196 LELITLKIKGQSFMLHQIRKMVGVAMAIAR------------GFTS-KDLIEKTFGLDQF 242
+E++++ + G+SFMLHQIRKM+G ++ R F K I TF
Sbjct: 349 VEMVSINVVGESFMLHQIRKMIGCLISFIRKGMFEDCETRDQAFDQIKAYINSTFEHTPL 408
Query: 243 DLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEIT 302
+LPMAPG GLLL+ ++ +N+ +H L E D +V EF+ K I + E T
Sbjct: 409 NLPMAPGAGLLLDYCIFNEWNKN--NSSIHGELKI-ESD-QVEEFK-KTIYREIALLEST 463
Query: 303 EKPMLAWLE 311
+K W+E
Sbjct: 464 KKEFKNWIE 472
Score = 245 (91.3 bits), Expect = 2.7e-46, Sum P(2) = 2.7e-46
Identities = 56/154 (36%), Positives = 90/154 (58%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ YSG Y G+Q +N G+KT+E ++ ALF+ G ++ D+ Q +
Sbjct: 142 VAIILGYSGTNYAGMQ----------KNPGLKTVEEELEHALFRTGGISPDNMYYQQKVD 191
Query: 61 FQRAARTDKGVSALKQIVSLKL----PE-EANKEAINEHLPEQIRILSIKRVTKGFNSKN 115
+ R ARTDKGVSA++ +VSLK+ P+ E K A+N+ LP+ I + I RV F++KN
Sbjct: 192 WIRCARTDKGVSAIRNVVSLKMEMGPPDFEGMKIALNKELPKDITVFHIMRVNNSFHAKN 251
Query: 116 NCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFN 149
+AR+Y Y PT+ F P+ +K + + + N
Sbjct: 252 AVDARSYIYVTPTHVFE-PKFSKKNKSIVEEAAN 284
>SGD|S000006133 [details] [associations]
symbol:PUS1 "tRNA:pseudouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IPI]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;IDA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IDA]
[GO:0031120 "snRNA pseudouridine synthesis" evidence=IMP]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0016853 "isomerase activity" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 SGD:S000006133 GO:GO:0005634
GO:GO:0003723 EMBL:BK006949 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031120 GO:GO:0031119 eggNOG:COG0101 HOGENOM:HOG000213984
KO:K06173 OrthoDB:EOG48KVMJ Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 EMBL:X80673 EMBL:Z73568
PIR:S65231 RefSeq:NP_015112.1 ProteinModelPortal:Q12211
DIP:DIP-5344N IntAct:Q12211 MINT:MINT-513680 STRING:Q12211
PaxDb:Q12211 PeptideAtlas:Q12211 EnsemblFungi:YPL212C GeneID:855889
KEGG:sce:YPL212C CYGD:YPL212c GeneTree:ENSGT00510000047706
OMA:TEWISIT NextBio:980559 Genevestigator:Q12211 GermOnline:YPL212C
Uniprot:Q12211
Length = 544
Score = 277 (102.6 bits), Expect = 3.5e-45, Sum P(2) = 3.5e-45
Identities = 64/175 (36%), Positives = 98/175 (56%)
Query: 141 FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV-KDG-LEL 198
+R++ + +A QY G HNFHNFT + +PS R++ PFV D E
Sbjct: 287 YRISAAKLAKFRASTSQYLGAHNFHNFTLGKDFKEPSAIRFMKDIKVSDPFVIGDAQTEW 346
Query: 199 ITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVH 258
I++KI GQSFMLHQIRKMV +A I R + I + +G + ++P AP LGLLLE
Sbjct: 347 ISIKIHGQSFMLHQIRKMVSMATLITRCGCPVERISQAYGQQKINIPKAPALGLLLEAPV 406
Query: 259 YDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELL 313
++ YN++ Q G ++++ F + EV++F+ K I + K E+ E A+ +
Sbjct: 407 FEGYNKRLEQFG-YKAIDFSKYQDEVDKFKMKHIYDKIYKEEVDENVFNAFFSYI 460
Score = 228 (85.3 bits), Expect = 3.5e-45, Sum P(2) = 3.5e-45
Identities = 55/137 (40%), Positives = 80/137 (58%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+M Y G GY G+Q Y N TIE + +A +AG +++D+ N +
Sbjct: 77 VAVMVGYCGTGYHGMQ--Y--------NPPNPTIESALFKAFVEAGAISKDNSNDLKKNG 126
Query: 61 FQRAARTDKGVSALKQIVSLKLP-EEAN-KEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F RAARTDKGV A ++SLK+ E+ + K+ INE LPE IR+ I+RV K F+ + C+
Sbjct: 127 FMRAARTDKGVHAGGNLISLKMIIEDPDIKQKINEKLPEGIRVWDIERVNKAFDCRKMCS 186
Query: 119 ARTYSYTCPTYAFATPQ 135
+R Y Y PTY+ P+
Sbjct: 187 SRWYEYLLPTYSLIGPK 203
>POMBASE|SPBC887.11 [details] [associations]
symbol:pus2 "tRNA pseudouridine synthase Pus2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0009982 "pseudouridine synthase activity" evidence=ISO]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PomBase:SPBC887.11 GO:GO:0005634
GO:GO:0046872 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 KO:K15452
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 PIR:T40736 RefSeq:NP_596485.1
ProteinModelPortal:O94295 EnsemblFungi:SPBC887.11.1 GeneID:2541236
KEGG:spo:SPBC887.11 OrthoDB:EOG4M952K NextBio:20802348
Uniprot:O94295
Length = 451
Score = 289 (106.8 bits), Expect = 4.9e-45, Sum P(2) = 4.9e-45
Identities = 66/179 (36%), Positives = 98/179 (54%)
Query: 140 DFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELI 199
++R+ D+ LQ LLK+YEG HNFHNFT PS R+I S C PFV + E I
Sbjct: 266 NYRIKEDRLKVLQQLLKKYEGRHNFHNFTVTDDSTSPSNYRFIESVTCGTPFVYENWEWI 325
Query: 200 TLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMAPGLGLLLEQVH 258
+ IKG SFML+QIRKM+ + I R LI+K F + ++ +PG LLL+ +
Sbjct: 326 PVTIKGNSFMLNQIRKMMAHVLMIIRSCAPTGLIDKAFDPNITMNISKSPGHVLLLKDIK 385
Query: 259 YDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHS 317
+ YN DG+ E + F ++++ + K I P ++K E EK ++L + H+
Sbjct: 386 FSSYNDSV-TDGL-EKIQFDCFEEDILSLKIKTIYPDIIKLEQKEKLFFSFLSYIDQHT 442
Score = 206 (77.6 bits), Expect = 4.9e-45, Sum P(2) = 4.9e-45
Identities = 50/139 (35%), Positives = 78/139 (56%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
++ YSG GY G+Q N +KTIEGD++ L K G++ ++ + +++
Sbjct: 43 ILLGYSGYGYHGIQI----------NNPLKTIEGDVVAVLKKLGYLKTNNIDA-EHLCIA 91
Query: 63 RAARTDKGVSALKQIVSLKL----PEEAN--KEAINEHLPEQIRILSIKRVTKGFNSKNN 116
RAARTDKGV L+ ++SL L P + + K +NE L QIR+ S+ K FN + +
Sbjct: 92 RAARTDKGVHTLRNLISLNLFVDKPLDISLLKTELNEALCSQIRVWSVFPAPKYFNPRIS 151
Query: 117 CNARTYSYTCPTYAFATPQ 135
C +RTY Y P++A P+
Sbjct: 152 CESRTYEYLIPSFALLPPK 170
>UNIPROTKB|G4N3B4 [details] [associations]
symbol:MGG_07663 "tRNA pseudouridine synthase 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 EMBL:CM001233 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
RefSeq:XP_003711599.1 ProteinModelPortal:G4N3B4
EnsemblFungi:MGG_07663T0 GeneID:2683583 KEGG:mgr:MGG_07663
Uniprot:G4N3B4
Length = 720
Score = 275 (101.9 bits), Expect = 8.7e-44, Sum P(3) = 8.7e-44
Identities = 62/162 (38%), Positives = 94/162 (58%)
Query: 132 ATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPF 191
AT K +R++ ++ LQA L +Y GTHNFHN+T +K D S R+I SF
Sbjct: 487 ATYVAAKRRYRVSQERIGKLQAALDKYVGTHNFHNYTILKKFTDSSAKRHIKSFKVNPEP 546
Query: 192 VKDG-LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGL 250
++ G E ++LK+ GQSFM+HQIRKMV +A+ R D I +++ + +P APGL
Sbjct: 547 IQIGETEWVSLKVHGQSFMMHQIRKMVAMAVLTVRCGVPLDRITQSYEAKRISIPKAPGL 606
Query: 251 GLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFI 292
GLLLE+ ++ Y+ + Q E L+F + + E+ F+ I
Sbjct: 607 GLLLERPVFENYSYRAVQTLGKEPLNFDKYEDEIEAFKRAHI 648
Score = 139 (54.0 bits), Expect = 8.7e-44, Sum P(3) = 8.7e-44
Identities = 35/94 (37%), Positives = 51/94 (54%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ Y+G GY G+Q N KTIEGD+ A AG +++ + + P+ +
Sbjct: 114 VAVLIGYAGTGYKGMQI----------NHFEKTIEGDLFRAFVDAGAISKANASDPKKVS 163
Query: 61 FQRAARTDKGVSALKQIVSLKL--PEEANKEAIN 92
R ARTDKGV A ++SLKL P E + A N
Sbjct: 164 LMRCARTDKGVHAASNVISLKLIVPLEEKELAGN 197
Score = 104 (41.7 bits), Expect = 8.7e-44, Sum P(3) = 8.7e-44
Identities = 19/44 (43%), Positives = 25/44 (56%)
Query: 91 INEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATP 134
IN HLP+QIR+ I R F+ C++R Y Y PT+A P
Sbjct: 294 INSHLPDQIRVWDILRTNNSFSCYQACDSRWYEYLMPTHALIPP 337
>ASPGD|ASPL0000001573 [details] [associations]
symbol:AN6165 species:162425 "Emericella nidulans"
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=RCA] [GO:0004730 "pseudouridylate synthase activity"
evidence=RCA] [GO:0005634 "nucleus" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0031120 "snRNA pseudouridine synthesis"
evidence=IEA] [GO:0031119 "tRNA pseudouridine synthesis"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0003723 EMBL:BN001301 EMBL:AACD01000105
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101
HOGENOM:HOG000213984 KO:K06173 OMA:IRKMISM OrthoDB:EOG48KVMJ
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 RefSeq:XP_663769.1 ProteinModelPortal:Q5AZW5
STRING:Q5AZW5 EnsemblFungi:CADANIAT00006845 GeneID:2871138
KEGG:ani:AN6165.2 Uniprot:Q5AZW5
Length = 574
Score = 288 (106.4 bits), Expect = 1.2e-43, Sum P(2) = 1.2e-43
Identities = 61/162 (37%), Positives = 98/162 (60%)
Query: 140 DFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCE-QPFVKDGLEL 198
++R+ + +Q L +Y GT NF+N+T +++ DPS R+I SF +P + DG E
Sbjct: 336 EYRIPATRLARIQQALDKYVGTKNFYNYTIQKQYRDPSAKRHIKSFKLNPEPIIIDGTEW 395
Query: 199 ITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVH 258
++LK+ GQSFM+HQIRKMV +A + R I ++G + +P APGLGLLLE+
Sbjct: 396 LSLKVHGQSFMMHQIRKMVAMATMVVRCGCDPARINDSYGEFKMAIPKAPGLGLLLERPV 455
Query: 259 YDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
+D YN+K D E + F + ++E++EF+ + I + + E
Sbjct: 456 FDGYNKK-AADLKKEPIDFGKYEEEISEFKQREIYDRIFREE 496
Score = 203 (76.5 bits), Expect = 1.2e-43, Sum P(2) = 1.2e-43
Identities = 51/136 (37%), Positives = 73/136 (53%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++ YSG GY G+Q + KTIEG++ A AG +++ + P+
Sbjct: 81 VAVLIGYSGTGYKGMQL----------STTEKTIEGELFTAFVAAGAISKANAADPKKSS 130
Query: 61 FQRAARTDKGVSALKQIVSLKL-PEEAN-KEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
R ARTDKGV A IVSLKL E+ + + IN+HL QIR+ I K F+S C+
Sbjct: 131 LVRCARTDKGVHAAGNIVSLKLIVEDPDIVQKINDHLSPQIRVWGILVANKSFSSYQMCD 190
Query: 119 ARTYSYTCPTYAFATP 134
+R Y Y P++ F P
Sbjct: 191 SRIYEYLIPSHCFLPP 206
>SGD|S000003031 [details] [associations]
symbol:PUS2 "Mitochondrial tRNA:pseudouridine synthase"
species:4932 "Saccharomyces cerevisiae" [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0016853 "isomerase activity" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;IGI;IMP]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0031119 "tRNA pseudouridine synthesis"
evidence=IGI;IMP] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 SGD:S000003031 GO:GO:0005739 EMBL:BK006941
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119
RefSeq:NP_011452.4 GeneID:852817 KEGG:sce:YGL063W KO:K15452
RefSeq:NP_011456.5 GeneID:852821 KEGG:sce:YGL059W eggNOG:COG0101
HOGENOM:HOG000213984 OrthoDB:EOG48KVMJ Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
GeneTree:ENSGT00510000047706 EMBL:X80674 EMBL:Z72585 PIR:S64067
ProteinModelPortal:P53167 SMR:P53167 DIP:DIP-5022N MINT:MINT-499274
STRING:P53167 EnsemblFungi:YGL063W CYGD:YGL063w OMA:CFISSES
BioCyc:MetaCyc:MONOMER-16706 NextBio:972357 Genevestigator:P53167
GermOnline:YGL063W Uniprot:P53167
Length = 370
Score = 219 (82.2 bits), Expect = 1.4e-34, Sum P(2) = 1.4e-34
Identities = 50/133 (37%), Positives = 74/133 (55%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
M+ Y G GY+G+Q Y N KTIEG+I+ LF G ++E++ P+ F
Sbjct: 1 MLLGYCGSGYYGMQ--Y--------NPPHKTIEGEILTKLFDVGAISEENSLAPKKNSFM 50
Query: 63 RAARTDKGVSALKQIVSLKLP-EEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
AARTDKGV A+ ++SLK+ E +N LP +IR+ I+ V K FN+++ C++R
Sbjct: 51 AAARTDKGVHAMLNLLSLKITLREDTVAKLNAALPPEIRVWGIQPVNKKFNARSACDSRW 110
Query: 122 YSYTCPTYAFATP 134
Y Y P + P
Sbjct: 111 YQYLIPEFILIGP 123
Score = 210 (79.0 bits), Expect = 1.4e-34, Sum P(2) = 1.4e-34
Identities = 52/131 (39%), Positives = 75/131 (57%)
Query: 137 TKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGL 196
T + L+P + + +A +++Y GTHNFHNFT+ + DPS R+I Q G
Sbjct: 189 TLSGYCLSPSKLDAFEAAMQEYVGTHNFHNFTTGKLWGDPSAQRHIKKVVVSQ--ASPGW 246
Query: 197 ELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTF--GLDQFDLPMAPGLGLLL 254
I ++I GQSFMLHQIR+MV +A+ AR +++ F G ++ +P AP GLLL
Sbjct: 247 --ICVRIHGQSFMLHQIRRMVALAVLAARCQLPPNIVRNYFNAGPRKY-IPRAPAQGLLL 303
Query: 255 EQVHYDLYNQK 265
E +D YN K
Sbjct: 304 EGPVFDGYNTK 314
>TAIR|locus:2065748 [details] [associations]
symbol:AT2G30320 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 GO:GO:0008033 EMBL:AC002338
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101
KO:K06173 Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
IPI:IPI00537336 PIR:A84707 RefSeq:NP_180591.1 UniGene:At.38371
ProteinModelPortal:O22928 PaxDb:O22928 PRIDE:O22928
EnsemblPlants:AT2G30320.1 GeneID:817582 KEGG:ath:AT2G30320
TAIR:At2g30320 HOGENOM:HOG000070648 InParanoid:O22928 OMA:IRKMVGT
PhylomeDB:O22928 ProtClustDB:PLN03078 Genevestigator:O22928
GermOnline:AT2G30320 Uniprot:O22928
Length = 510
Score = 229 (85.7 bits), Expect = 2.0e-29, Sum P(2) = 2.0e-29
Identities = 59/177 (33%), Positives = 94/177 (53%)
Query: 10 VGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDK 69
+GY G + Y I + +KTIEG++ A++KAG + + ++ I + R++RTDK
Sbjct: 69 IGYVG--TDYRGLQIQRDDPSIKTIEGELEVAIYKAGGIRDSNYGDLHKIGWARSSRTDK 126
Query: 70 GVSALKQIVSLKL--PEEANKE---------AINEHLPEQIRILSIKRVTKGFNSKNNCN 118
GV +L +SLK+ PE A K+ I++HLPE IR+ S+ + F+ + C
Sbjct: 127 GVHSLATSISLKMEIPETAWKDDPQGTVLAKCISKHLPENIRVFSVLPSNRRFDPRRECT 186
Query: 119 ARTYSYTCPTYAFATPQD-TKD--DFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRK 172
R YSY P T D D+ +T FN +LK++EG + FHN+T + +
Sbjct: 187 LRKYSYLLPVDVLGIKNSFTSDEIDYHIT--DFN---EILKEFEGEYPFHNYTQRSR 238
Score = 156 (60.0 bits), Expect = 2.0e-29, Sum P(2) = 2.0e-29
Identities = 37/121 (30%), Positives = 65/121 (53%)
Query: 195 GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFG-LDQFDLPMAPGLGLL 253
G + + I G+SFMLHQIRKM+G A+A+ R +D+I + + LP+AP L+
Sbjct: 340 GFGFVEISIWGESFMLHQIRKMIGTAVAVKRELLPRDIIRLSLNKFTRIVLPLAPSEVLI 399
Query: 254 LEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYL-VKTEITEKPMLAWLEL 312
L +++ + + GM + EV+KE+ EF ++P + + + + P W++
Sbjct: 400 LRGNSFEV-RRLPERPGMEATGESEEVEKEIEEFYRAVMVPQVSIFLDSEKSPWKEWVDH 458
Query: 313 L 313
L
Sbjct: 459 L 459
>POMBASE|SPCC16C4.06c [details] [associations]
symbol:SPCC16C4.06c "tRNA pseudouridine synthase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006400 "tRNA modification"
evidence=ISO] [GO:0009982 "pseudouridine synthase activity"
evidence=ISO] [GO:0016829 "lyase activity" evidence=IEA]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PomBase:SPCC16C4.06c GO:GO:0005634 GO:GO:0005737 EMBL:CU329672
GO:GO:0003723 GO:GO:0006400 GO:GO:0016829 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 OMA:CFISSES PIR:T41096 RefSeq:NP_587916.1
ProteinModelPortal:O74451 EnsemblFungi:SPCC16C4.06c.1
GeneID:2539359 KEGG:spo:SPCC16C4.06c NextBio:20800524
Uniprot:O74451
Length = 413
Score = 205 (77.2 bits), Expect = 8.3e-28, Sum P(2) = 8.3e-28
Identities = 49/157 (31%), Positives = 86/157 (54%)
Query: 139 DDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFV-KDGLE 197
+ FRL+ + +FL+ + GTH FH++T+++ D S R+++ + + K +
Sbjct: 208 EPFRLSKPKLDFLKHACTMFRGTHRFHSYTTEKGFSDASSRRFLLDVRVDNLHIDKLNRQ 267
Query: 198 LITLKIKGQSFMLHQIRKMVGVAMAIAR-GFTSKDLIEKTFGLD-QFDLPMAPGLGLLLE 255
+ L GQSFM HQIRKMVG+ + + R G+ ++ L+ TF + +P AP LLL
Sbjct: 268 WVKLIFHGQSFMKHQIRKMVGILIHLTRTGWNAQVLLN-TFNNSYRIRIPRAPAEFLLLN 326
Query: 256 QVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFI 292
Q + +N+K + HE + + K +++F H F+
Sbjct: 327 QPIFQAFNKKCSRFD-HEPVEWSCAQKGIDQFAHSFL 362
Score = 167 (63.8 bits), Expect = 8.3e-28, Sum P(2) = 8.3e-28
Identities = 44/136 (32%), Positives = 69/136 (50%)
Query: 6 AYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAA 65
+Y G G+ GLQ Y N +KTI+ + +A + G V + + ++P+ I+ AA
Sbjct: 44 SYRGTGFAGLQ--Y--------NANVKTIQDTLFQAFARVGAVVQVNADSPKKIRMCSAA 93
Query: 66 RTDKGVSALKQIVSLK------LPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNA 119
RTDKGV A+ ++ LK LP N +N+ LP IR+ + R F+ C++
Sbjct: 94 RTDKGVHAIVNVLGLKVLDNQPLPHVVN--LVNDILPPCIRVWKMARTFNSFSPHTVCDS 151
Query: 120 RTYSYTCPTYAFATPQ 135
R Y Y P + TP+
Sbjct: 152 RVYEYWLPVSSLLTPR 167
>TAIR|locus:2199726 [details] [associations]
symbol:AT1G76120 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS] [GO:0006730
"one-carbon metabolic process" evidence=RCA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 EMBL:CP002684 GO:GO:0003723
GO:GO:0008033 EMBL:AC009978 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 KO:K06173 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 HOGENOM:HOG000030790
EMBL:AY086381 EMBL:AY123978 EMBL:BT000606 IPI:IPI00531649
RefSeq:NP_565126.1 UniGene:At.34703 ProteinModelPortal:Q9SGS1
EnsemblPlants:AT1G76120.1 GeneID:843944 KEGG:ath:AT1G76120
TAIR:At1g76120 InParanoid:Q9SGS1 OMA:HIGATER PhylomeDB:Q9SGS1
ProtClustDB:CLSN2689226 Genevestigator:Q9SGS1 Uniprot:Q9SGS1
Length = 463
Score = 289 (106.8 bits), Expect = 3.7e-25, P = 3.7e-25
Identities = 71/220 (32%), Positives = 110/220 (50%)
Query: 95 LPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQAL 154
L I+I ++ G S + R +C ++ K F + +
Sbjct: 212 LRSDIKIEALSSNLAGLCSVDVEVGRIQEDSCKLNTNSSETKVKSKFCYGEKEKERFSRI 271
Query: 155 LKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIR 214
L Y G++NFHNFT++ K DP+ +R I+SF DG++ I ++ G+SFMLHQIR
Sbjct: 272 LSCYVGSYNFHNFTTRTKADDPTANRQIISFTANTVINLDGIDFIKCEVLGKSFMLHQIR 331
Query: 215 KMVGVAMAIARGFTSKDLIEKTFGLD-QFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHE 273
KM+G+A+AI R S+ LI+ F D +PMAP +GL L++ + YN+ + +D HE
Sbjct: 332 KMMGLAVAIMRNCASESLIQSAFSKDVNITVPMAPEVGLYLDECFFTSYNRNF-EDS-HE 389
Query: 274 SLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELL 313
+ +E F+ K I ++ TE M WL L
Sbjct: 390 EVSMEAYKEEAEAFKLKHIYSHIGATERKYGNMALWLHSL 429
Score = 243 (90.6 bits), Expect = 7.8e-19, P = 7.8e-19
Identities = 58/132 (43%), Positives = 77/132 (58%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A++FA+ GVGY G+Q +N G KTIEG++ EALF AG V E P+
Sbjct: 24 VAIIFAFCGVGYQGMQ----------KNPGAKTIEGELEEALFHAGAVPESIRGKPKLYD 73
Query: 61 FQRAARTDKGVSALKQIVSLKLPEE--ANKEAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
F R+ARTDKGVSA+ Q+VS + + +N +LP QIRI K VT F+SK C+
Sbjct: 74 FARSARTDKGVSAVGQVVSGRFIVDPLGFVNRLNSNLPNQIRIFGYKHVTPSFSSKKFCD 133
Query: 119 ARTYSYTCPTYA 130
R Y Y P +A
Sbjct: 134 RRRYVYLLPVFA 145
>UNIPROTKB|F5GXL3 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase A, mitochondrial"
species:9606 "Homo sapiens" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020103 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:AC131009 Gene3D:3.30.70.580
PANTHER:PTHR11142 HGNC:HGNC:15508 ChiTaRS:PUS1 IPI:IPI01010630
ProteinModelPortal:F5GXL3 Ensembl:ENST00000537484
ArrayExpress:F5GXL3 Bgee:F5GXL3 Uniprot:F5GXL3
Length = 200
Score = 208 (78.3 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 56/153 (36%), Positives = 86/153 (56%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 58 IVLLMAYSGKGYHGMQ----------RNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMR 107
Query: 58 NIQFQRAARTDKG--VSALKQI-VSLKLPEEANKEAI-NEHLPEQIRILSIKRVTKGFNS 113
+ FQR ARTDK + L ++ S + + + + + + P + +KRVT GFNS
Sbjct: 108 KMSFQRCARTDKSQDLILLPRLECSGMIMAHCSLKLLGSSNPPASASRVGLKRVTGGFNS 167
Query: 114 KNNCNARTYSYTCPTYAFA-TPQDTKDD-FRLT 144
KN C+ARTY Y PT+AFA +D +D+ +RL+
Sbjct: 168 KNRCDARTYCYLLPTFAFAHKDRDVQDETYRLS 200
>DICTYBASE|DDB_G0281619 [details] [associations]
symbol:DDB_G0281619 "tRNA pseudouridine synthase"
species:44689 "Dictyostelium discoideum" [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 dictyBase:DDB_G0281619
GO:GO:0003723 EMBL:AAFI02000042 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0101 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 ProtClustDB:CLSZ2846682
RefSeq:XP_640538.1 ProteinModelPortal:Q54TQ3
EnsemblProtists:DDB0304450 GeneID:8623148 KEGG:ddi:DDB_G0281619
InParanoid:Q54TQ3 OMA:FINGHIA Uniprot:Q54TQ3
Length = 504
Score = 175 (66.7 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 50/181 (27%), Positives = 93/181 (51%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+AM+F Y G GY+GL Y + + +IE I + LF+ G + + + ++
Sbjct: 91 VAMVFGYDGTGYYGLG--YQVDIKY------PSIENLIEKVLFRCGHILPSNVGELKRLK 142
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK----------EAINEHLPEQIRILSIKRVTKG 110
+ ++RTDKGV +L ++S L + N + IN +LP IR+ S +V++
Sbjct: 143 WSHSSRTDKGVHSLATVISCFLVVDDNTFKNDINQTFIDTINNYLPSSIRLFSACKVSRS 202
Query: 111 FNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSK 170
F ++ R+Y+Y P+ + ++ ++ D+ N +L+ + G +++HNFTSK
Sbjct: 203 FQARKKGIERSYNYMVPS-------EYLNNIKI--DEMN---KILQNFIGINSYHNFTSK 250
Query: 171 R 171
R
Sbjct: 251 R 251
Score = 98 (39.6 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 36/129 (27%), Positives = 64/129 (49%)
Query: 180 RYIMSFDCEQPFVK-DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFG 238
R I SF E ++ G I G+SF+L+QIR+MVG ++I +G+++ + +E +
Sbjct: 311 RNIKSFYVENEIIEIKGKGWYKFVIIGESFILYQIRRMVGFFLSIVKGYSTVEALELSLK 370
Query: 239 LDQFDL--PMAPGLGLLLEQVHYD-------LYNQ----KYGQDGMHESL---HFHEVDK 282
F + P AP L L V +D L++ ++ Q +S F+E++
Sbjct: 371 -SPFSICVPTAPPFPLYLFNVKFDPNSNVEKLFSNPEPIQFKQFNFLQSQLIPRFNEIEF 429
Query: 283 EVNEFRHKF 291
+ N+F+ F
Sbjct: 430 QTNQFKEFF 438
>DICTYBASE|DDB_G0286567 [details] [associations]
symbol:DDB_G0286567 species:44689 "Dictyostelium
discoideum" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 dictyBase:DDB_G0286567 GO:GO:0003723 EMBL:AAFI02000089
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
RefSeq:XP_637536.1 ProteinModelPortal:Q54LM5
EnsemblProtists:DDB0187011 GeneID:8625675 KEGG:ddi:DDB_G0286567
InParanoid:Q54LM5 ProtClustDB:CLSZ2846682 Uniprot:Q54LM5
Length = 615
Score = 170 (64.9 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 53/185 (28%), Positives = 92/185 (49%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
MA+ FAY+G Y+G S Y F + F IE I ++L + G + ++ + I+
Sbjct: 150 MALCFAYNGSKYYG--SSYSFDIRF------PAIENLIEKSLIRNGHIALENIGNLKRIK 201
Query: 61 FQRAARTDKGVSALKQIVS--LKLPEEANKEA------------INEHLPEQIRILSIKR 106
R++RTDKGV ++ ++S L + +E + A IN +LP IR++S +
Sbjct: 202 LSRSSRTDKGVHSVSTVISAFLLIDKETERLAQFGTPPQYFIDNINRYLPSDIRLISATK 261
Query: 107 VTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHN 166
++ F ++ +R Y+Y P D D + D+ N ++L + GT +FHN
Sbjct: 262 PSRTFRARPASKSRVYNYL-------VPMDHLKDISI--DRMN---SILSNFIGTSSFHN 309
Query: 167 FTSKR 171
+T +R
Sbjct: 310 YTYQR 314
Score = 105 (42.0 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 31/128 (24%), Positives = 66/128 (51%)
Query: 175 DPSCSRYIMSFDCEQPFVK-DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLI 233
+P R IM+F E+ V +G + + G SF+++QIRKM+G +++ +G+ ++ +
Sbjct: 391 NPVNVRTIMNFYVEKETVLFEGKQWYRFVVVGDSFLMYQIRKMMGFFLSVVKGYQNEIGL 450
Query: 234 EKTFGLDQFDL--PMAPGLGLLLEQVHYDL------YNQKYGQDGMHESL--HFHEVDKE 283
+ + F + P++P L L V++ +++ + ++ L H H+++ E
Sbjct: 451 QLSLK-SPFSICSPISPPFPLFLYDVNFPREKILLPVSRQIQNEFLNSKLMPHLHKIENE 509
Query: 284 VNEFRHKF 291
N+F F
Sbjct: 510 TNQFSEFF 517
>UNIPROTKB|F5GY32 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 GO:GO:0005730 GO:GO:0003677
GO:GO:0045944 GO:GO:0003723 GO:GO:0005667 GO:GO:0030374
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 EMBL:AC131009
Gene3D:3.30.70.580 PANTHER:PTHR11142 HGNC:HGNC:15508 ChiTaRS:PUS1
IPI:IPI01009368 ProteinModelPortal:F5GY32 SMR:F5GY32
Ensembl:ENST00000538037 ArrayExpress:F5GY32 Bgee:F5GY32
Uniprot:F5GY32
Length = 154
Score = 181 (68.8 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 48/107 (44%), Positives = 63/107 (58%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 58 IVLLMAYSGKGYHGMQ----------RNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMR 107
Query: 58 NIQFQRAARTDKGVSALKQIVSLK--LPEEANKEAINEHLPEQIRIL 102
+ FQR ARTDKGVSA Q+VSLK L ++ E IN HLP IRIL
Sbjct: 108 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDI-LEKINSHLPSHIRIL 153
>POMBASE|SPAC25B8.05 [details] [associations]
symbol:SPAC25B8.05 "tRNA-pseudouridine synthase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0009982 "pseudouridine synthase activity"
evidence=ISO] [GO:0016829 "lyase activity" evidence=IEA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=ISO]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PomBase:SPAC25B8.05 GO:GO:0005829 GO:GO:0005634 EMBL:CU329670
GO:GO:0003723 GO:GO:0016829 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031119 KO:K01855 eggNOG:COG0101 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
HOGENOM:HOG000199032 OMA:KFSRCGR OrthoDB:EOG46T69C PIR:T50192
RefSeq:NP_594465.1 ProteinModelPortal:Q9UTB3 STRING:Q9UTB3
EnsemblFungi:SPAC25B8.05.1 GeneID:2541578 KEGG:spo:SPAC25B8.05
NextBio:20802672 Uniprot:Q9UTB3
Length = 450
Score = 198 (74.8 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 78/258 (30%), Positives = 111/258 (43%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A FAY G Y GL + + T+EG + EAL +A +T+ P +
Sbjct: 94 VAFKFAYCGWNYNGLAYQL-------EPTPLPTVEGKVFEALLRAHLITD-----PSSCS 141
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANK-----EAINEHLPEQIRILSIKRVTKGFNSKN 115
F R RTDKGVSA+ Q++SL + + + +N LP IRI +GF+++
Sbjct: 142 FSRCGRTDKGVSAMGQVISLNVRHSERRPIIYCDVLNRLLPADIRITGYAFPPEGFDARF 201
Query: 116 NCNARTYSYTCPTYAFATPQDTKD--DFRLTPDQFNFLQALLKQYEGTHNFHNFTS--KR 171
+C R Y Y F TKD L D+ N AL Y G H+F NF
Sbjct: 202 SCKQRHYKYL-----F-----TKDYPGGSLDIDRMNEAAAL---YLGEHDFRNFCKIDAS 248
Query: 172 KPLDPSCSRYIMS-FDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSK 230
K + R + S C P GL L+ G +F+ HQ+R M+ + I +
Sbjct: 249 KQITNYHRRILSSKVICIDP--STGLYAFDLQ--GTAFLWHQVRCMMAILFLIGQKLEPA 304
Query: 231 DLIEKTFGLDQFDLPMAP 248
LI LD +P P
Sbjct: 305 SLINDL--LDIKKVPTKP 320
>UNIPROTKB|F1P3X5 [details] [associations]
symbol:PUS3 "tRNA pseudouridine synthase" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071 OMA:NHAVKTH
GeneTree:ENSGT00510000047444 EMBL:AADN02042043 EMBL:AADN02042044
IPI:IPI00588906 Ensembl:ENSGALT00000001417 Uniprot:F1P3X5
Length = 379
Score = 127 (49.8 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 63/245 (25%), Positives = 104/245 (42%)
Query: 79 SLKLPEEAN-KEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDT 137
S K EE +N LP IR+L+ V F+++ +C RTY Y P D
Sbjct: 149 SSKSEEELRYTHILNRVLPPDIRVLAWAPVEPDFSARFSCLKRTYRYFFPC------ADL 202
Query: 138 KDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDP-SCSRYIMSFDCE------QP 190
D L + ++Y GTH+F N + R I+S +
Sbjct: 203 --DVAL-------MHTAAQRYVGTHDFRNLCKMDVANGVINFQRTILSAQVTWADGGAES 253
Query: 191 FVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGL 250
++D L ++ GQ+F+ HQ+R M+ + I + ++I++ LD P P
Sbjct: 254 GLRDPFRLCQFEVTGQAFLYHQVRCMMAILFLIGQRMEGPEIIDEL--LDVEKNPRKPQY 311
Query: 251 GLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFR--H--KFILPYLVKTEITEKPM 306
+ +E LY+ ++ E++ +H D+EV EF H + Y VKT++ M
Sbjct: 312 SMAVE-FPLVLYDCEF------ENIQWH-YDREVQEFNVTHLQQLWASYAVKTQVLHS-M 362
Query: 307 LAWLE 311
L L+
Sbjct: 363 LRGLD 367
Score = 98 (39.6 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 33/89 (37%), Positives = 43/89 (48%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ N TIE + EAL K V +D Q
Sbjct: 61 VALRIAYLGWGYQGFASQ--------ENTS-NTIEEKLFEALKKTRLV-DDR----QTSN 106
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKE 89
+ R RTDKGVSA Q++SL L ++E
Sbjct: 107 YHRCGRTDKGVSAFGQVISLDLRSNLSEE 135
>UNIPROTKB|F1S759 [details] [associations]
symbol:LOC100739830 "tRNA pseudouridine synthase"
species:9823 "Sus scrofa" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K01855
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 OMA:NHAVKTH GeneTree:ENSGT00510000047444
EMBL:CU928873 RefSeq:XP_003482688.1 Ensembl:ENSSSCT00000016588
GeneID:100739830 KEGG:ssc:100739830 Uniprot:F1S759
Length = 479
Score = 177 (67.4 bits), Expect = 9.7e-11, P = 9.7e-11
Identities = 94/350 (26%), Positives = 155/350 (44%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ N TIE + EAL K V Q
Sbjct: 64 VALKIAYLGWGYQGFASQ--------ENTS-NTIEEKLFEALTKTRLV-----ENRQTSN 109
Query: 61 FQRAARTDKGVSALKQIVSLKL---------PEEAN-KEAINE--------H-----LPE 97
+ R RTDKGVSA Q++SL L E+ N K+ +N+ H LP
Sbjct: 110 YHRCGRTDKGVSAFGQVISLDLRSHFLKDKDSEDINLKDEVNDATKEIRYTHILNRVLPP 169
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IR+L+ V F+++ +C RTY Y P +A D + N+ ++
Sbjct: 170 DIRVLAWAPVEPSFSARFSCLERTYRYFFP-HA---------DLDIVT--MNYAA---QK 214
Query: 158 YEGTHNFHNF---------TSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSF 208
Y GTH+F N T+ ++ + S ++S E+ ++ +L ++ GQ+F
Sbjct: 215 YVGTHDFRNLCKMDVANGVTNFQRTI-LSAQVQLLSQSLEEERWQEAFQLCQFEVVGQAF 273
Query: 209 MLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQ 268
+ HQ+R M+ V I +G ++I++ +++ P P + +E LY+ K+
Sbjct: 274 LYHQVRCMMAVLFLIGQGMEKPEVIDELLNIEKN--PQKPQYSMAVE-FPLVLYDCKF-- 328
Query: 269 DGMHESLHFHEVDKEVNEFR--H--KFILPYLVKTEITEKPMLAWLELLA 314
E++ + D+EV EF H + + VKT++ ML L+ +A
Sbjct: 329 ----ENIKWI-YDREVQEFNVTHLQQLWANHAVKTQMLYS-MLQGLDSVA 372
>ZFIN|ZDB-GENE-030131-9433 [details] [associations]
symbol:pus3 "pseudouridylate synthase 3"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 ZFIN:ZDB-GENE-030131-9433 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K01855
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 CTD:83480 HOGENOM:HOG000199032
HOVERGEN:HBG053769 OrthoDB:EOG4B2SXG EMBL:BC049516 IPI:IPI00509994
RefSeq:NP_956361.1 UniGene:Dr.79340 ProteinModelPortal:Q7ZW97
PRIDE:Q7ZW97 GeneID:337487 KEGG:dre:337487 InParanoid:Q7ZW97
NextBio:20812266 ArrayExpress:Q7ZW97 Bgee:Q7ZW97 Uniprot:Q7ZW97
Length = 460
Score = 136 (52.9 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 57/221 (25%), Positives = 97/221 (43%)
Query: 91 INEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNF 150
+N LP IRIL V GF+++ +C +RTY Y P + D L
Sbjct: 161 LNRVLPHDIRILQWAPVESGFSARFDCQSRTYRYYFP----------RGDLDL-----EL 205
Query: 151 LQALLKQYEGTHNFHNFTSKRKPLDP-SCSRYIMSFDCE-----QPFV-KDGLELITLKI 203
+ K+YEGTH+F N R I+S + P V D +L ++
Sbjct: 206 MAEAAKRYEGTHDFRNLCKMDVGNGVLQFQRTILSASVQPAQLPHPSVHNDPHQLFVFQV 265
Query: 204 KGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQ--VHYDL 261
KG + + HQ+R M+ + + I + + ++I++ LD P P + ++ V YD
Sbjct: 266 KGLALLYHQVRCMMALLLLIGQKLEAPEVIDQL--LDVEKNPRKPQYSMAVDYPLVLYDC 323
Query: 262 YNQKYG-QDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEI 301
+ + ++ + E +H +N F H+ + VKT+I
Sbjct: 324 HFEGVNWRNEIEEEIHI------LNTF-HQHWVQNAVKTQI 357
Score = 83 (34.3 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 25/73 (34%), Positives = 36/73 (49%)
Query: 10 VGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDK 69
+ Y G Q Y F + + T+E + EAL K + +D Q + R RTDK
Sbjct: 64 LAYLGWQ--YQGFAV--QENTDNTVEARLFEALLKTKLI-QDR----QTSCYHRCGRTDK 114
Query: 70 GVSALKQIVSLKL 82
GVSA Q++S+ L
Sbjct: 115 GVSAFSQVISIDL 127
>TIGR_CMR|DET_0504 [details] [associations]
symbol:DET_0504 "tRNA pseudouridine synthase A"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0016829 GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0031119 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000248673 OMA:YSINANR
RefSeq:YP_181248.1 ProteinModelPortal:Q3Z951 STRING:Q3Z951
GeneID:3230211 KEGG:det:DET0504 PATRIC:21608077
ProtClustDB:CLSK837466 BioCyc:DETH243164:GJNF-504-MONOMER
Uniprot:Q3Z951
Length = 248
Score = 165 (63.1 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 53/212 (25%), Positives = 90/212 (42%)
Query: 55 TPQNIQFQRAARTDKGVSALKQIVSL----KLPEEANKEAINEHLPEQIRILSIKRVTKG 110
T + + + RTD GV A Q+VS L + K +N +LP I + + V +
Sbjct: 36 TSEQTRVSGSGRTDAGVHAAYQVVSYLSESSLGLDKIKGGLNFYLPPDIAVKEVHFVAES 95
Query: 111 FNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPD-QFNFLQALLKQYEGTHNFHNFTS 169
F+ + +R YSY +P +++ ++ K EG H+F F S
Sbjct: 96 FDVRRRAISREYSYQILNSKTRSPLARLQAWQVPYKLDIKLMEQAFKMLEGEHDFIAFAS 155
Query: 170 KRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTS 229
L P + + + + +++ + + I+ SF+ HQ+R +G + + RG S
Sbjct: 156 S---LGPEIKKTVRRVNWTRLGIRE--DRLIFNIEANSFLTHQVRNTIGTLVELGRGTMS 210
Query: 230 KDLIEKTFGLDQFDL--PMAPGLGLLLEQVHY 259
E F L P AP GL L +V+Y
Sbjct: 211 MSEFEALFEAKTPGLAGPAAPACGLSLVRVNY 242
>UNIPROTKB|F1RVF1 [details] [associations]
symbol:LOC100739830 "tRNA pseudouridine synthase"
species:9823 "Sus scrofa" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047444 OMA:CQVISID
Ensembl:ENSSSCT00000012144 Uniprot:F1RVF1
Length = 479
Score = 168 (64.2 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 93/350 (26%), Positives = 154/350 (44%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ N TIE + EAL K V Q
Sbjct: 64 VALKIAYLGWGYQGFASQ--------ENTS-NTIEEKLFEALTKTRLV-----ENRQTSN 109
Query: 61 FQRAARTDKGVSALKQIVSLKL---------PEEAN-KEAINE--------H-----LPE 97
+ R RTDKGVSA Q++SL L E+ N K+ +N+ H LP
Sbjct: 110 YHRCGRTDKGVSAFGQVISLDLRSHFLKDKDSEDINLKDEVNDATKEIRYTHILNRVLPP 169
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQ 157
IR+L+ V F+++ +C RTY Y P +A D + N+ ++
Sbjct: 170 DIRVLAWAPVEPSFSARFSCLERTYRYFFP-HA---------DLDIVT--MNYAA---QK 214
Query: 158 YEGTHNFHNF---------TSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSF 208
Y GTH+F N T+ ++ + S ++S E+ ++ +L ++ GQ+F
Sbjct: 215 YVGTHDFRNLCKMDVANGVTNFQRTI-LSAQVQLLSQSLEEERWQEAFQLCQFEVVGQAF 273
Query: 209 MLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQ 268
+ HQ+R M+ V I +G ++I++ +++ P + +E LY+ K+
Sbjct: 274 LYHQVRCMMAVLFLIGQGMEKPEVIDELLNIEKN--PQKHQYSMAVE-FPLVLYDCKF-- 328
Query: 269 DGMHESLHFHEVDKEVNEFR--H--KFILPYLVKTEITEKPMLAWLELLA 314
E++ + D+EV EF H + + VKT++ ML L+ +A
Sbjct: 329 ----ENIKWI-YDREVQEFNVTHLQQLWANHAVKTQMLYS-MLQGLDSVA 372
>UNIPROTKB|E2RGS6 [details] [associations]
symbol:PUS3 "tRNA pseudouridine synthase" species:9615
"Canis lupus familiaris" [GO:0031119 "tRNA pseudouridine synthesis"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031119 KO:K01855 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 CTD:83480 OMA:NHAVKTH
GeneTree:ENSGT00510000047444 EMBL:AAEX03003383 RefSeq:XP_536533.1
ProteinModelPortal:E2RGS6 Ensembl:ENSCAFT00000016731 GeneID:479397
KEGG:cfa:479397 NextBio:20854586 Uniprot:E2RGS6
Length = 480
Score = 167 (63.8 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 85/312 (27%), Positives = 134/312 (42%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ N TIE + +AL K V + Q
Sbjct: 64 VALKIAYLGWGYQGFASQ--------ENTN-NTIEEKLFDALTKTRLV-----ESRQTSN 109
Query: 61 FQRAARTDKGVSALKQIVSLKL----PE-----EAN-KEAINE--------H-----LPE 97
+ R RTDKGVSA Q++SL L PE ++N K +N+ H LP
Sbjct: 110 YHRCGRTDKGVSAFGQVISLDLRSHFPEGSTSEDSNLKNEVNDVAKEIRYTHILNRVLPP 169
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPT--YAFATPQDTKDDFRLTPDQFNFLQALL 155
IR+L+ V F+++ +C RTY Y P T + T D N + +
Sbjct: 170 DIRVLAWAPVEPSFSARFSCLERTYRYFFPRADLDIITMNYAAQKYVGTHDFRNLCK--M 227
Query: 156 KQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRK 215
G NF +R L S D EQ ++ +L ++ GQ+F+ HQ+R
Sbjct: 228 DVANGVINF-----QRTVLFAQVELVGQSLDKEQ--WQEPFQLCQFEVVGQAFLYHQVRC 280
Query: 216 MVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESL 275
M+ + I +G ++I++ +++ P P + +E LY+ K+ E++
Sbjct: 281 MMAILFLIGQGMEKPEIIDELLNIEKN--PQKPQYSMAVE-FPLVLYDCKF------ENV 331
Query: 276 HFHEVDKEVNEF 287
+ D+EV EF
Sbjct: 332 KWI-YDREVQEF 342
>UNIPROTKB|Q9BZE2 [details] [associations]
symbol:PUS3 "tRNA pseudouridine(38/39) synthase"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 GO:GO:0005634 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 CTD:83480 HOGENOM:HOG000199032
HOVERGEN:HBG053769 OrthoDB:EOG4B2SXG EMBL:AF325689 EMBL:AK055702
EMBL:AK314251 EMBL:BC004822 EMBL:BC013427 IPI:IPI00306260
RefSeq:NP_112597.3 UniGene:Hs.660922 ProteinModelPortal:Q9BZE2
SMR:Q9BZE2 STRING:Q9BZE2 PhosphoSite:Q9BZE2 DMDM:126302589
PaxDb:Q9BZE2 PRIDE:Q9BZE2 DNASU:83480 Ensembl:ENST00000227474
Ensembl:ENST00000530811 GeneID:83480 KEGG:hsa:83480 UCSC:uc001qcy.2
GeneCards:GC11M125763 H-InvDB:HIX0010246 HGNC:HGNC:25461
HPA:HPA038040 neXtProt:NX_Q9BZE2 PharmGKB:PA134874048
InParanoid:Q9BZE2 OMA:NHAVKTH PhylomeDB:Q9BZE2 GenomeRNAi:83480
NextBio:72425 ArrayExpress:Q9BZE2 Bgee:Q9BZE2 CleanEx:HS_PUS3
Genevestigator:Q9BZE2 GermOnline:ENSG00000110060 Uniprot:Q9BZE2
Length = 481
Score = 166 (63.5 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 82/291 (28%), Positives = 121/291 (41%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ N TIE + EAL K V + Q
Sbjct: 65 VALRIAYMGWGYQGFASQ--------ENTN-NTIEEKLFEALTKTRLV-----ESRQTSN 110
Query: 61 FQRAARTDKGVSALKQIVSLKL----P-----------EEANKEA--------INEHLPE 97
+ R RTDKGVSA Q++SL L P EEAN A +N LP
Sbjct: 111 YHRCGRTDKGVSAFGQVISLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPP 170
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPT--YAFATPQDTKDDFRLTPDQFNFLQALL 155
IRIL+ V F+++ +C RTY Y P T + T D N + +
Sbjct: 171 DIRILAWAPVEPSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCK--M 228
Query: 156 KQYEGTHNFHN-FTSKRKPL---DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLH 211
G NF S + L P R+ ++PF +L ++ GQ+F+ H
Sbjct: 229 DVANGVINFQRTILSAQVQLVGQSPGEGRW------QEPF-----QLCQFEVTGQAFLYH 277
Query: 212 QIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE--QVHYD 260
Q+R M+ + I +G ++I++ +++ P P + +E V YD
Sbjct: 278 QVRCMMAILFLIGQGMEKPEIIDELLNIEKN--PQKPQYSMAVEFPLVLYD 326
>UNIPROTKB|E1BUI0 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase" species:9031
"Gallus gallus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 CTD:126789 OMA:WALPADC
GeneTree:ENSGT00510000048520 EMBL:AADN02040857 EMBL:AADN02040858
IPI:IPI00574950 RefSeq:XP_417580.2 UniGene:Gga.10892
Ensembl:ENSGALT00000002630 GeneID:419419 KEGG:gga:419419
NextBio:20822478 Uniprot:E1BUI0
Length = 291
Score = 161 (61.7 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 61/191 (31%), Positives = 91/191 (47%)
Query: 91 INEHL-PEQIRILSIKRVTKGFNSKNNCNARTYSYT----CPTYAFATPQDTKDDFRLTP 145
+N HL PE IRILS RVT F+++ + +RTY Y C T+ P +D P
Sbjct: 92 LNHHLKPEPIRILSAYRVTNNFHARFSALSRTYIYRLLMGC-THHSEIPVFERDLCWAPP 150
Query: 146 DQFNFLQALLKQYE---GTHNFHNFTSKRKPLD-PSCSRYIMSFDCEQP---FVKD---- 194
+ + A+ + GTH+F F S S + I+ D QP F+
Sbjct: 151 GGYLNVPAMQDAAQFLLGTHDFSTFCSLNSETPFRSPVKTILQADI-QPSSGFLSHHYEY 209
Query: 195 -GLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGL-DQFDLP---MAPG 249
GL+ LK K +SF+ Q+R+MVG +A+ +G + I++ + D P MAP
Sbjct: 210 RGLQFWELKFKSRSFLYRQVRRMVGALVAVGQGKLAPHHIKELLEMKDARAFPAFAMAPS 269
Query: 250 LGLLLEQVHYD 260
GL L+ V Y+
Sbjct: 270 SGLFLKSVEYN 280
>WB|WBGene00006473 [details] [associations]
symbol:tag-124 species:6239 "Caenorhabditis elegans"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:Z47075 RefSeq:NP_496062.3
GeneID:174509 KEGG:cel:CELE_E02H1.3 CTD:174509 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 HOGENOM:HOG000199032
OMA:NHAVKTH GeneTree:ENSGT00510000047444 PIR:T20413
ProteinModelPortal:Q09524 SMR:Q09524 STRING:Q09524
EnsemblMetazoa:E02H1.3 UCSC:E02H1.3.1 WormBase:E02H1.3
InParanoid:Q09524 NextBio:884332 Uniprot:Q09524
Length = 402
Score = 124 (48.7 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 60/233 (25%), Positives = 95/233 (40%)
Query: 91 INEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNF 150
+N LP+ IR+ + V + FN++ +CN RTY Y+ FA K D L ++
Sbjct: 136 LNGVLPKTIRVFAWAPVAQTFNARFDCNRRTYKYS-----FA-----KADLNL--EKMRQ 183
Query: 151 LQALLKQYEGTHNFHNFTS---KRKPLDPSCSRYIMSFDCEQPFV---KDGLELITLKIK 204
LL G H+F NF K L S R + EQ D ++ L +
Sbjct: 184 GAELLV---GEHDFSNFCQIDMNEKRLLQSYVRKVYEVKVEQVSTHPENDMYSMVELTVS 240
Query: 205 GQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQ 264
G F+ H IR +V + I R LI + L ++ P P L L++
Sbjct: 241 GSGFLWHMIRYIVTILQEIGRENEQPSLISQLLDLKKY--PSRPQY-TLASDTPLCLFDC 297
Query: 265 KYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHS 317
Y + + +H + + V + K Y ++ + E ML L +A+ S
Sbjct: 298 GYKSEDVEWKVHDYTLKSTVTGLQ-KTWATYQARSRMMEN-MLGELTGMAEFS 348
Score = 81 (33.6 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 21/48 (43%), Positives = 26/48 (54%)
Query: 33 TIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSL 80
T+E IM+AL K + ED F R RTDKGVSA KQ ++
Sbjct: 55 TVENHIMQALIKTHLI-EDW----TKCDFSRCGRTDKGVSAFKQTAAM 97
>RGD|1310757 [details] [associations]
symbol:Pus3 "pseudouridylate synthase 3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISO] [GO:0031119
"tRNA pseudouridine synthesis" evidence=IEA;ISO] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 RGD:1310757
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 CTD:83480 HOGENOM:HOG000199032
HOVERGEN:HBG053769 OrthoDB:EOG4B2SXG OMA:NHAVKTH
GeneTree:ENSGT00510000047444 EMBL:BC158693 EMBL:CH474007
IPI:IPI00194825 RefSeq:NP_001101604.1 UniGene:Rn.22763
STRING:B0BN58 Ensembl:ENSRNOT00000017648 GeneID:315554
KEGG:rno:315554 UCSC:RGD:1310757 NextBio:669414
Genevestigator:B0BN58 Uniprot:B0BN58
Length = 479
Score = 162 (62.1 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 85/308 (27%), Positives = 127/308 (41%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ N TIE + EAL K V + Q
Sbjct: 64 VALKIAYLGWGYQGFASQ--------ENTS-NTIEEKLFEALIKTRLV-----ESRQTSN 109
Query: 61 FQRAARTDKGVSALKQIVSLKL----P-----EEAN---------KEA-----INEHLPE 97
+ R RTDKGVSA Q++SL L P E++N KE +N LP
Sbjct: 110 YHRCGRTDKGVSAFGQVISLDLRSQFPRSRDSEDSNLKDGADDIAKEIRYAHILNRVLPA 169
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSY--TCPTYAFATPQDTKDDFRLTPDQFNFLQALL 155
IR+L+ F+++ +C RTY Y C AT + T D N + +
Sbjct: 170 DIRVLAWAPAEPSFSARFSCLERTYRYFFPCADLDIATMNYAAQKYVGTHDFRNLCK--M 227
Query: 156 KQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDG-LELITLKIKGQSFMLHQIR 214
G NF +R L S E + G +L ++ GQ+F+ HQ+R
Sbjct: 228 DVANGVTNF-----QRTILSAQVQTVAQSPGEEG---RQGPFQLCQFEVIGQAFLYHQVR 279
Query: 215 KMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE--QVHYD--LYNQKYGQDG 270
M+ + I +G ++I++ +++ P P + +E V YD N K+ D
Sbjct: 280 CMMAILFLIGQGMEKPEIIDELLNIEKN--PQKPQYSMAVEFPLVLYDCKFENTKWIYD- 336
Query: 271 MHESLHFH 278
HE F+
Sbjct: 337 -HEVHEFN 343
>MGI|MGI:3047787 [details] [associations]
symbol:Pusl1 "pseudouridylate synthase-like 1" species:10090
"Mus musculus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PIRSF:PIRSF001430 MGI:MGI:3047787 GO:GO:0003723 GO:GO:0008033
EMBL:AL670236 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
UniGene:Mm.259270 eggNOG:COG0101 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 CTD:126789
HOGENOM:HOG000248674 HOVERGEN:HBG053770 OMA:WALPADC
OrthoDB:EOG4P5K9S EMBL:AK151452 EMBL:AK160236 IPI:IPI00458175
IPI:IPI00626517 IPI:IPI00875388 RefSeq:NP_001028662.1
ProteinModelPortal:A2ADA5 SMR:A2ADA5 STRING:A2ADA5
PhosphoSite:A2ADA5 PaxDb:A2ADA5 PRIDE:A2ADA5
Ensembl:ENSMUST00000097737 GeneID:433813 KEGG:mmu:433813
UCSC:uc008wfi.1 UCSC:uc012drb.1 GeneTree:ENSGT00510000048520
InParanoid:A2ADA5 NextBio:409016 Bgee:A2ADA5 Genevestigator:A2ADA5
Uniprot:A2ADA5
Length = 291
Score = 157 (60.3 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 57/196 (29%), Positives = 90/196 (45%)
Query: 83 PEEANKEAINEHLPEQ-IRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQ----DT 137
PE K A+N HL IR+L RV F++++ +RTY Y T Q +
Sbjct: 91 PEVVAK-ALNTHLKHPAIRVLKAFRVPNDFHARHAATSRTYQYRLATGCSWPNQLPVFEQ 149
Query: 138 KDDFRLTPDQFNF--LQALLKQYEGTHNFHNFTSKRKPLDPSCS---RYIMSFDCEQPFV 192
+ L + + +Q + GTH+F F S P+ + R +S PFV
Sbjct: 150 NVCWALQTEYLDMAAMQEAAQHLLGTHDFSAFQSAGSPVTNTVRTLRRVSVSPGPASPFV 209
Query: 193 -KDG---LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTS----KDLIEKTFGLDQFDL 244
+G L+ TL+ + QSF+ Q+R+M V +A+ G + K ++E L ++
Sbjct: 210 LPEGSRRLQFWTLEFESQSFLYRQVRRMTAVLVAVGLGILAPTQVKVILESQDPLGKYQA 269
Query: 245 PMAPGLGLLLEQVHYD 260
+AP GL L+ V YD
Sbjct: 270 RVAPARGLFLKSVLYD 285
>UNIPROTKB|F1N5P3 [details] [associations]
symbol:PUS3 "tRNA pseudouridine synthase" species:9913 "Bos
taurus" [GO:0031119 "tRNA pseudouridine synthesis" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
IPI:IPI00688075 UniGene:Bt.33259 OMA:NHAVKTH
GeneTree:ENSGT00510000047444 EMBL:DAAA02063102
Ensembl:ENSBTAT00000019065 Uniprot:F1N5P3
Length = 481
Score = 161 (61.7 bits), Expect = 6.3e-09, P = 6.3e-09
Identities = 90/335 (26%), Positives = 144/335 (42%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ N TIE + EAL K V Q
Sbjct: 65 VALKIAYLGWGYQGFASQ--------ENTS-NTIEEKLFEALTKTRLV-----ENRQTSN 110
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKEAINEH--LPEQIRILSIK-RVTKGFNSKNNC 117
+ R RTDKGVSA Q++SL L K +EH L ++ ++ + R T N
Sbjct: 111 YHRCGRTDKGVSAFGQVISLDLRSHIPKGRDSEHFNLKNEVNDVATEIRYTHILNRVLPP 170
Query: 118 NARTYSY----TCPTYAFATPQDTKDDF--RLTPDQFNFLQALLKQYEGTHNFHNFTSKR 171
+ R ++ T + F+ + T F R D A K Y GTH+F N
Sbjct: 171 DIRVLAWAPVETSFSARFSCLERTYRYFFPRANLDIVTMNYAAQK-YVGTHDFRNLCKMD 229
Query: 172 KPLDP-SCSRYIMSFDCE---QPFVKDG----LELITLKIKGQSFMLHQIRKMVGVAMAI 223
+ R I+S + Q ++G +L ++ GQ+F+ HQ+R M+ V I
Sbjct: 230 VANGVINFQRTILSAQVQRVGQNLGEEGWQEPFQLCQFEVTGQAFLYHQVRCMMAVLFLI 289
Query: 224 ARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKE 283
+G ++I++ +++ P P + +E LY+ K+ E++ + D+E
Sbjct: 290 GQGMEKPEVIDELLNIEKN--PQKPQYSMAVE-FPLVLYDCKF------ENIKWI-YDRE 339
Query: 284 VNEFR--H--KFILPYLVKTEITEKPMLAWLELLA 314
V EF H + + VKT++ ML L+ +A
Sbjct: 340 VQEFNVTHLQQLWANHAVKTQMLYS-MLQGLDSVA 373
>UNIPROTKB|Q3SX07 [details] [associations]
symbol:PUS3 "tRNA pseudouridine(38/39) synthase"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0005634 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 EMBL:BC104569 IPI:IPI00688075
RefSeq:NP_001029684.1 UniGene:Bt.33259 ProteinModelPortal:Q3SX07
STRING:Q3SX07 PRIDE:Q3SX07 GeneID:515824 KEGG:bta:515824 CTD:83480
HOGENOM:HOG000199032 HOVERGEN:HBG053769 InParanoid:Q3SX07
OrthoDB:EOG4B2SXG NextBio:20872016 Uniprot:Q3SX07
Length = 481
Score = 161 (61.7 bits), Expect = 6.3e-09, P = 6.3e-09
Identities = 90/335 (26%), Positives = 144/335 (42%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ N TIE + EAL K V Q
Sbjct: 65 VALKIAYLGWGYQGFASQ--------ENTS-NTIEEKLFEALTKTRLV-----ENRQTSN 110
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKEAINEH--LPEQIRILSIK-RVTKGFNSKNNC 117
+ R RTDKGVSA Q++SL L K +EH L ++ ++ + R T N
Sbjct: 111 YHRCGRTDKGVSAFGQVISLDLRSHIPKGRDSEHFNLKNEVNDVATEIRYTHILNRVLPP 170
Query: 118 NARTYSY----TCPTYAFATPQDTKDDF--RLTPDQFNFLQALLKQYEGTHNFHNFTSKR 171
+ R ++ T + F+ + T F R D A K Y GTH+F N
Sbjct: 171 DIRVLAWAPVETSFSARFSCLERTYRYFFPRANLDIVTMNYAAQK-YVGTHDFRNLCKMD 229
Query: 172 KPLDP-SCSRYIMSFDCE---QPFVKDG----LELITLKIKGQSFMLHQIRKMVGVAMAI 223
+ R I+S + Q ++G +L ++ GQ+F+ HQ+R M+ V I
Sbjct: 230 VANGVINFQRTILSAQVQRVGQNLGEEGWQEPFQLCQFEVTGQAFLYHQVRCMMAVLFLI 289
Query: 224 ARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKE 283
+G ++I++ +++ P P + +E LY+ K+ E++ + D+E
Sbjct: 290 GQGMEKPEVIDELLNIEKN--PQKPQYSMAVE-FPLVLYDCKF------ENIKWI-YDRE 339
Query: 284 VNEFR--H--KFILPYLVKTEITEKPMLAWLELLA 314
V EF H + + VKT++ ML L+ +A
Sbjct: 340 VQEFNVTHLQQLWANHAVKTQMLYS-MLQGLDSVA 373
>MGI|MGI:1914299 [details] [associations]
symbol:Pus3 "pseudouridine synthase 3" species:10090 "Mus
musculus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IDA] [GO:0016853
"isomerase activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IDA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 MGI:MGI:1914299 GO:GO:0005634 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 UniGene:Mm.482285 GO:GO:0031119
KO:K01855 eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 CTD:83480 HOGENOM:HOG000199032
HOVERGEN:HBG053769 OrthoDB:EOG4B2SXG OMA:NHAVKTH EMBL:AF266505
EMBL:AK079095 EMBL:BC029253 IPI:IPI00331619 RefSeq:NP_075781.3
UniGene:Mm.425574 ProteinModelPortal:Q9JI38 SMR:Q9JI38
STRING:Q9JI38 PhosphoSite:Q9JI38 PRIDE:Q9JI38
Ensembl:ENSMUST00000034615 GeneID:67049 KEGG:mmu:67049
UCSC:uc009oth.2 GeneTree:ENSGT00510000047444 InParanoid:Q9JI38
BRENDA:4.2.1.70 NextBio:323424 Bgee:Q9JI38 CleanEx:MM_PUS3
Genevestigator:Q9JI38 GermOnline:ENSMUSG00000032103 Uniprot:Q9JI38
Length = 481
Score = 159 (61.0 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 85/307 (27%), Positives = 128/307 (41%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G GY G S+ N TIE + EAL K V + Q
Sbjct: 66 VALKIAYLGWGYQGFASQ--------ENTS-NTIEEKLFEALTKTRLV-----ESRQTSN 111
Query: 61 FQRAARTDKGVSALKQIVSLKL----P-----EEAN---------KEA-----INEHLPE 97
+ R RTDKGVSA Q++SL L P E++N KE +N LP
Sbjct: 112 YHRCGRTDKGVSAFGQVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPA 171
Query: 98 QIRILSIKRVTKGFNSKNNCNARTYSYTCPT--YAFATPQDTKDDFRLTPDQFNFLQALL 155
IR+L+ V F+++ +C RTY Y P AT + T D N + +
Sbjct: 172 DIRVLAWAPVEPSFSARFSCLERTYRYFFPRADLDIATMNYAAQKYVGTHDFRNLCK--M 229
Query: 156 KQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRK 215
G NF +R L S E+ ++ +L ++ GQ+F+ HQ+R
Sbjct: 230 DVANGVINF-----QRTILCAQVQLVAQSPGEERR--QEPFQLCQFEVIGQAFLYHQVRC 282
Query: 216 MVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLE--QVHYD--LYNQKYGQDGM 271
M+ + I +G ++I++ + + P P + +E V YD N K+ D
Sbjct: 283 MMAILFLIGQGMEKPEIIDELLNIQKN--PQKPQYSMAVEFPLVLYDCKFENTKWIYD-- 338
Query: 272 HESLHFH 278
HE F+
Sbjct: 339 HEVQEFN 345
>TIGR_CMR|NSE_0020 [details] [associations]
symbol:NSE_0020 "tRNA pseudouridine synthase A"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006400
"tRNA modification" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
GO:GO:0008033 EMBL:CP000237 GenomeReviews:CP000237_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000248672 OMA:RHYRYRI
RefSeq:YP_505923.1 ProteinModelPortal:Q2GF33 STRING:Q2GF33
GeneID:3932291 KEGG:nse:NSE_0020 PATRIC:22680151
ProtClustDB:CLSK2528006 BioCyc:NSEN222891:GHFU-58-MONOMER
Uniprot:Q2GF33
Length = 243
Score = 150 (57.9 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 66/220 (30%), Positives = 99/220 (45%)
Query: 52 SFNTPQNIQFQRAARTDKGVSALKQIVSLKLPEEANK-----EAINEHLPEQ-IRILSIK 105
SF + I A RTD GV AL Q+ E + A+N HL E+ I +L I+
Sbjct: 35 SFLLKEKIAVNVAGRTDAGVHALGQVFHFDARESTLQPFQIVNAVNYHLKEKLIVLLKIE 94
Query: 106 RVTKGFNSKNNCNARTYSYTCPTYAFATPQDT-KDDFRLTPDQFNFLQALLKQYE---GT 161
V + F+++ + R Y Y TP K+ P N L + +Q + G
Sbjct: 95 IVDETFDARFSAIRRHYQYKITNRK--TPLAVFKNRSWHVPQTLN-LDLIREQAQYLVGK 151
Query: 162 HNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAM 221
H+F +F S + S I + D K+G E+I +SF+ HQ+R MVG +
Sbjct: 152 HDFQSFRSSKC----GASNAIRTLD-RLEVEKNGEEMI-FHASAKSFLHHQVRIMVGTLV 205
Query: 222 AIARG--FTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHY 259
AIA G + +++ K ++ P AP GL L +V Y
Sbjct: 206 AIASGKLMSVTEILSKKNR--RYAGPTAPPCGLYLLKVDY 243
>TAIR|locus:2009021 [details] [associations]
symbol:AT1G34150 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS] [GO:0006730
"one-carbon metabolic process" evidence=RCA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 KO:K01855 eggNOG:COG0101
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000199032 EMBL:AF360187 EMBL:AY040002
IPI:IPI00521240 RefSeq:NP_564438.1 UniGene:At.19010
ProteinModelPortal:Q9C5K6 SMR:Q9C5K6 STRING:Q9C5K6 PaxDb:Q9C5K6
PRIDE:Q9C5K6 EnsemblPlants:AT1G34150.1 GeneID:840314
KEGG:ath:AT1G34150 TAIR:At1g34150 InParanoid:Q9C5K6 OMA:KFIGEHD
PhylomeDB:Q9C5K6 ProtClustDB:CLSN2688258 ArrayExpress:Q9C5K6
Genevestigator:Q9C5K6 Uniprot:Q9C5K6
Length = 446
Score = 150 (57.9 bits), Expect = 9.6e-08, P = 9.6e-08
Identities = 70/263 (26%), Positives = 112/263 (42%)
Query: 12 YFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGV 71
YFG + F+ Q +IE ++ +AL + + D ++ + R RTDKGV
Sbjct: 98 YFGKR----FYGFSAEAQMEPSIESEVFKALERTRLLVGDK----KDSCYSRCGRTDKGV 149
Query: 72 SALKQIVSLKL----------------------PEEANKEAINEHLPEQIRILSIKRVTK 109
S+ Q+++L L PE +N LP+ IR++
Sbjct: 150 SSTGQVIALFLRSRLKSPPGDSKAQVNGRTGERPEYDYVRVLNRALPDDIRVIGWSPAPI 209
Query: 110 GFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTS 169
F+++ +C AR Y Y F Q+ L +F K++ G H+F NF
Sbjct: 210 DFHARFSCYAREYKY------FFWRQN------LNLSAMDFAG---KKFIGEHDFRNFC- 253
Query: 170 KRKPLDPSC-SRYIMSFD---CEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIAR 225
K + C +R + F+ C+ +G +L T ++G +F+ HQIR MV V I +
Sbjct: 254 KMDVANVHCYTRRVTFFEVSPCQNSH--EGDQLCTFTMRGSAFLWHQIRCMVAVLFMIGQ 311
Query: 226 GFTSKDLIEKTFGLDQFDLPMAP 248
G S D+I+ LD P P
Sbjct: 312 GVESVDVIDTL--LDTKKTPRKP 332
>UNIPROTKB|F1RJE9 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase" species:9823
"Sus scrofa" [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142 OMA:WALPADC
GeneTree:ENSGT00510000048520 EMBL:FP102596
Ensembl:ENSSSCT00000003707 Uniprot:F1RJE9
Length = 302
Score = 146 (56.5 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 57/204 (27%), Positives = 92/204 (45%)
Query: 85 EANKEAINEHLPEQ-IRILSIKRVTKGFNSKNNCNARTYSYT----CPTYAFATPQDTKD 139
E EA+N HL IR+L RV F+++ +RTY Y CP + +
Sbjct: 92 EVLTEALNTHLRHPAIRVLQAFRVPSHFHARYAATSRTYLYRLATGCPRPDHLSVFERNR 151
Query: 140 DFRLTPDQFNF--LQALLKQYEGTHNFHNFTSKRKPL-DP--SCSRYIMSFDCEQPFV-- 192
+ L D + +Q + GTH+F F S P P + R +S + P V
Sbjct: 152 CWPLRADCLDVAAMQEAAQHLLGTHDFSAFQSTGSPATSPVRTLRRASVSPEPSSPLVLP 211
Query: 193 --KDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTS----KDLIEKTFGLDQFDLPM 246
GL +L+ + QSF+ Q+R+M V +A+ G + K ++E L + +
Sbjct: 212 GESRGLRFWSLEFESQSFLYRQVRRMTAVLVAVGLGALTPAQVKMILESRDPLGRHQSRV 271
Query: 247 APGLGLLLEQVHY-DLYNQKYGQD 269
AP GL L+ V Y DL +++ ++
Sbjct: 272 APAHGLFLKSVLYGDLGKRRWPKE 295
>UNIPROTKB|F1PXJ5 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase" species:9615
"Canis lupus familiaris" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PIRSF:PIRSF001430 GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 OMA:WALPADC GeneTree:ENSGT00510000048520
EMBL:AAEX03003844 Ensembl:ENSCAFT00000030633 Uniprot:F1PXJ5
Length = 303
Score = 143 (55.4 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 58/211 (27%), Positives = 89/211 (42%)
Query: 85 EANKEAINEHLPEQ-IRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQ----DTKD 139
E EA+N H+ IR+L RV F++++ +RTY Y T Q +
Sbjct: 92 EVLAEALNAHVRHPAIRVLQAFRVPSDFHARHAATSRTYLYRLVTGCHRPDQLSVFERNR 151
Query: 140 DFRLTPD--QFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCS---RYIMSFDCEQPFV-- 192
+ L D + +Q + GTH+F F S P S R +S D PFV
Sbjct: 152 CWPLRADCLDVDAMQEAAQHLLGTHDFRAFQSAGSPTTSSVRTLRRASVSPDPGSPFVLA 211
Query: 193 -KDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTS----KDLIEKTFGLDQFDLPMA 247
+ L L+ + +SF+ Q+R+M V +A+ G K ++E L + +A
Sbjct: 212 QEKRLHFWNLEFESRSFLYRQVRRMTAVLVAVGLGALRPAQVKVILESRDPLGRHQARVA 271
Query: 248 PGLGLLLEQVHYDLY--NQKYGQDGMHESLH 276
P GL L+ V Y+ N Q G+ H
Sbjct: 272 PAHGLFLKSVLYENLGGNPACVQQGLPHGSH 302
>UNIPROTKB|J9P592 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase" species:9615
"Canis lupus familiaris" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PIRSF:PIRSF001430 GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 GeneTree:ENSGT00510000048520 EMBL:AAEX03003844
Ensembl:ENSCAFT00000048781 Uniprot:J9P592
Length = 305
Score = 142 (55.0 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 54/193 (27%), Positives = 84/193 (43%)
Query: 85 EANKEAINEHLPEQ-IRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQ----DTKD 139
E EA+N H+ IR+L RV F++++ +RTY Y T Q +
Sbjct: 90 EVLAEALNAHVRHPAIRVLQAFRVPSDFHARHAATSRTYLYRLVTGCHRPDQLSVFERNR 149
Query: 140 DFRLTPD--QFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCS---RYIMSFDCEQPFV-- 192
+ L D + +Q + GTH+F F S P S R +S D PFV
Sbjct: 150 CWPLRADCLDVDAMQEAAQHLLGTHDFRAFQSAGSPTTSSVRTLRRASVSPDPGSPFVLA 209
Query: 193 -KDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTS----KDLIEKTFGLDQFDLPMA 247
+ L L+ + +SF+ Q+R+M V +A+ G K ++E L + +A
Sbjct: 210 QEKRLHFWNLEFESRSFLYRQVRRMTAVLVAVGLGALRPAQVKVILESRDPLGRHQARVA 269
Query: 248 PGLGLLLEQVHYD 260
P GL L+ V Y+
Sbjct: 270 PAHGLFLKSVLYE 282
>UNIPROTKB|A6QP68 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase" species:9913
"Bos taurus" [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 HOGENOM:HOG000248674 HOVERGEN:HBG053770
OMA:WALPADC OrthoDB:EOG4P5K9S GeneTree:ENSGT00510000048520
EMBL:DAAA02043243 EMBL:BC149176 IPI:IPI00698369 UniGene:Bt.62155
STRING:A6QP68 Ensembl:ENSBTAT00000044945 InParanoid:A6QP68
Uniprot:A6QP68
Length = 312
Score = 141 (54.7 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 55/194 (28%), Positives = 88/194 (45%)
Query: 85 EANKEAINEHLPEQ-IRILSIKRVTKGFNSKNNCNARTYSYT----CPTYAFATPQDTKD 139
E EA+N HL IR+L RV F++++ +RTY Y CP +
Sbjct: 113 EVLTEALNTHLKHPAIRVLQAFRVPSHFHARHAAISRTYLYRLATGCPRPDRLPVFERNR 172
Query: 140 DFRLTPDQFNF--LQALLKQYEGTHNFHNFTSKRKPLD-P--SCSRYIMSFDCEQPFV-- 192
+ L D + +Q + GTH+F F S P P + R +S D PFV
Sbjct: 173 CWALQADCLDVAAMQEAAQHLLGTHDFSAFQSAGSPASSPVRTLRRASVSPDPASPFVLP 232
Query: 193 KDG--LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTS----KDLIEKTFGLDQFDLPM 246
++ L+ +++ + QSF+ Q+R+M V +A+ G K ++E L + +
Sbjct: 233 EESRQLQFWSMEFESQSFLYKQVRRMTAVLVAVGLGALMPAQVKAILESRDPLGKHQSRV 292
Query: 247 APGLGLLLEQVHYD 260
AP GL L+ V Y+
Sbjct: 293 APAHGLFLKSVLYE 306
>CGD|CAL0000624 [details] [associations]
symbol:orf19.6297 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 CGD:CAL0000624 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 EMBL:AACQ01000212
EMBL:AACQ01000211 RefSeq:XP_711136.1 RefSeq:XP_711154.1
ProteinModelPortal:Q59N30 STRING:Q59N30 GeneID:3647251
GeneID:3647265 KEGG:cal:CaO19.13676 KEGG:cal:CaO19.6297
Uniprot:Q59N30
Length = 489
Score = 144 (55.7 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 65/257 (25%), Positives = 107/257 (41%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A FAY G Y GL + + T+E ++AL K + E + ++
Sbjct: 132 VAFKFAYLGWNYNGLALQL-------EPTPLPTVEEVFLKALAKVKLIKEPI----EEVK 180
Query: 61 FQRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNAR 120
F R RTDKGVSA+ Q++S+ + E N+ PE L I ++ N+ + +
Sbjct: 181 FSRCGRTDKGVSAMNQVISINVRSNITLE--NQSNPE-FDDLEIDYISV-LNANLPSDIK 236
Query: 121 TYSYTC---PTY--AFAT-PQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
+S P + F+ + + FR + K Y+G H+F NF L
Sbjct: 237 VHSICLRPPPDFDARFSCLSRHYRYIFRKQDLDIELMNQGAKLYQGIHDFRNFCK----L 292
Query: 175 DPSCSRYIMSFDCE---QPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKD 231
D S + I +F E + + +KG +F+ HQ+R MV + I + S
Sbjct: 293 DGS--KQITNFVREIYQSQIIHLHQDYYCFDLKGSAFLWHQVRCMVAILFTIGQSLESPS 350
Query: 232 LIEKTFGLDQFDLPMAP 248
+I ++F P P
Sbjct: 351 IITDLMDTNKF--PTKP 365
>ASPGD|ASPL0000040109 [details] [associations]
symbol:AN3170 species:162425 "Emericella nidulans"
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=RCA] [GO:0004730 "pseudouridylate synthase activity"
evidence=RCA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 EMBL:BN001306
GO:GO:0003723 GO:GO:0008033 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 HOGENOM:HOG000199032
EnsemblFungi:CADANIAT00009900 OMA:LWDCIFP Uniprot:C8VIE4
Length = 664
Score = 80 (33.2 bits), Expect = 7.3e-07, Sum P(3) = 7.3e-07
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 192 VKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAP 248
V G ++ ++G +F+ HQ+R MVG+ + +G S ++ + LD P P
Sbjct: 451 VPPGCQVYVFNLQGSAFLWHQVRHMVGILFLVGQGLESPSVVREL--LDVTKNPRKP 505
Score = 80 (33.2 bits), Expect = 7.3e-07, Sum P(3) = 7.3e-07
Identities = 25/88 (28%), Positives = 41/88 (46%)
Query: 91 INEHLPEQIRILS-IKRVTKGFNSKNNCNARTYSYTCPTYAFA-TPQ---------DTKD 139
+N+ LPE IR+L+ + F+++ +C R Y Y AF+ TP D
Sbjct: 306 LNKALPEDIRVLAWCPNPPEDFDARYSCRERHYKYFFTQPAFSPTPGPLGLLPRKGDAPP 365
Query: 140 DFRLTPDQFNFLQALLKQYEGTHNFHNF 167
+R + ++ K +EG H+F NF
Sbjct: 366 KYREGWLDIDAMREAAKYFEGVHDFRNF 393
Score = 72 (30.4 bits), Expect = 7.3e-07, Sum P(3) = 7.3e-07
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 51 DSFNTP-QNIQFQRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQI 99
+ FN + ++ +A RTD+GVSA Q++ LK+ K E P Q+
Sbjct: 229 EPFNISWEGCEYSKAGRTDRGVSAFGQVIGLKVRSARPKR--KEPKPAQV 276
>UNIPROTKB|P65846 [details] [associations]
symbol:truA "tRNA pseudouridine synthase A" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PIRSF:PIRSF001430 GO:GO:0040007 GO:GO:0005618 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR EMBL:BX842583
GO:GO:0003723 GO:GO:0008033 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
HOGENOM:HOG000248674 ProtClustDB:PRK00021 OMA:TPFRNVH PIR:D70565
RefSeq:NP_217972.2 RefSeq:NP_338087.1 ProteinModelPortal:P65846
SMR:P65846 EnsemblBacteria:EBMYCT00000002601
EnsemblBacteria:EBMYCT00000071399 GeneID:887590 GeneID:922954
KEGG:mtc:MT3562 KEGG:mtu:Rv3455c PATRIC:18129561
TubercuList:Rv3455c Uniprot:P65846
Length = 297
Score = 112 (44.5 bits), Expect = 8.6e-07, Sum P(2) = 8.6e-07
Identities = 46/176 (26%), Positives = 75/176 (42%)
Query: 91 INEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFAT-PQDTKDDFRLTPDQFN 149
+ LP +RIL I R GF+++ + R Y Y T + PQ + P + +
Sbjct: 113 LGRFLPADVRILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQQARY-ITAWPRELD 171
Query: 150 F--LQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQS 207
+ A + G H+F F R+ + R + D + + G L+T + +
Sbjct: 172 LDAMTAASRDLMGLHDFAAFCRHRE--GATTIRDLQRLD----WSRAGT-LVTAHVTADA 224
Query: 208 FMLHQIRKMVGVAMAIA---RGFT-SKDLIEKTFGLDQFDLPMAPGLGLLLEQVHY 259
F +R +VG +A+ R T ++L+ T G D +AP GL L QV Y
Sbjct: 225 FCWSMVRSLVGALLAVGEHRRATTWCRELLTAT-GRSS-DFAVAPAHGLTLIQVDY 278
Score = 67 (28.6 bits), Expect = 8.6e-07, Sum P(2) = 8.6e-07
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 30 GMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLPEEA 86
G +T+ GD+ AL F TP ++ + A RTD GV A Q+ + +P +A
Sbjct: 43 GQRTVAGDLDAALTTI-------FRTP--VRLRAAGRTDAGVHASGQVAHVDVPADA 90
>UNIPROTKB|Q8N0Z8 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase-like 1"
species:9606 "Homo sapiens" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723 EMBL:AL139287
EMBL:CH471183 GO:GO:0008033 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0101 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 EMBL:AK075292 EMBL:AK298218
EMBL:BC034304 IPI:IPI00166125 IPI:IPI00915388 RefSeq:NP_699170.1
UniGene:Hs.400659 ProteinModelPortal:Q8N0Z8 SMR:Q8N0Z8
STRING:Q8N0Z8 PhosphoSite:Q8N0Z8 DMDM:52783232 PRIDE:Q8N0Z8
DNASU:126789 Ensembl:ENST00000379031 GeneID:126789 KEGG:hsa:126789
UCSC:uc001aed.3 UCSC:uc010nyi.2 CTD:126789 GeneCards:GC01P001233
HGNC:HGNC:26914 HPA:HPA032057 neXtProt:NX_Q8N0Z8
PharmGKB:PA134947837 HOGENOM:HOG000248674 HOVERGEN:HBG053770
InParanoid:Q8N0Z8 OMA:WALPADC OrthoDB:EOG4P5K9S PhylomeDB:Q8N0Z8
ChiTaRS:PUSL1 GenomeRNAi:126789 NextBio:81916 Bgee:Q8N0Z8
CleanEx:HS_PUSL1 Genevestigator:Q8N0Z8 GermOnline:ENSG00000169972
Uniprot:Q8N0Z8
Length = 303
Score = 138 (53.6 bits), Expect = 9.5e-07, P = 9.5e-07
Identities = 56/196 (28%), Positives = 86/196 (43%)
Query: 83 PEEANKEAINEHLPEQ-IRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQ----DT 137
P E EA+N HL IR+L RV F++++ +RTY Y T + +
Sbjct: 90 PPEVLAEALNTHLRHPAIRVLRAFRVPSDFHARHAATSRTYLYRLATGCHRRDELPVFER 149
Query: 138 KDDFRLTPDQFNF--LQALLKQYEGTHNFHNFTSKRKPLDPSCSRYI--MSFDCEQ--PF 191
+ L D + +Q + GTH+F F S P+ PS R + +S Q P
Sbjct: 150 NLCWTLPADCLDMVAMQEAAQHLLGTHDFSAFQSAGSPV-PSPVRTLRRVSVSPGQASPL 208
Query: 192 VKDG----LELITLKIKGQSFMLHQIRKMVGVAMAIARGFTS----KDLIEKTFGLDQFD 243
V L L+ + QSF+ Q+R+M V +A+ G + K ++E L +
Sbjct: 209 VTPEESRKLRFWNLEFESQSFLYRQVRRMTAVLVAVGLGALAPAQVKTILESQDPLGKHQ 268
Query: 244 LPMAPGLGLLLEQVHY 259
+AP GL L+ V Y
Sbjct: 269 TRVAPAHGLFLKSVLY 284
Score = 112 (44.5 bits), Expect = 0.00087, P = 0.00087
Identities = 46/183 (25%), Positives = 80/183 (43%)
Query: 15 LQSKYLFFLIFCRNQ--GMKTIEGDIMEALFKAGFVTE--DSFNTPQNIQFQRAARTDKG 70
++++YL + + G+ + G A+ ++ E + N+ + ++F ++RTD G
Sbjct: 10 VRARYLVYFQYVGTDFNGVAAVRGT-QRAVGVQNYLEEAAERLNSVEPVRFTISSRTDAG 68
Query: 71 VSALKQIVSLKL---------PEEANKEAINEHLPEQ-IRILSIKRVTKGFNSKNNCNAR 120
V AL L + P E EA+N HL IR+L RV F++++ +R
Sbjct: 69 VHALSNAAHLDVQRRSGRPPFPPEVLAEALNTHLRHPAIRVLRAFRVPSDFHARHAATSR 128
Query: 121 TYSYTCPTYAFATPQ----DTKDDFRLTPDQFNF--LQALLKQYEGTHNFHNFTSKRKPL 174
TY Y T + + + L D + +Q + GTH+F F S P+
Sbjct: 129 TYLYRLATGCHRRDELPVFERNLCWTLPADCLDMVAMQEAAQHLLGTHDFSAFQSAGSPV 188
Query: 175 DPS 177
PS
Sbjct: 189 -PS 190
>UNIPROTKB|G4MKS9 [details] [associations]
symbol:MGG_16154 "tRNA-pseudouridine synthase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723 GO:GO:0008033
EMBL:CM001231 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
RefSeq:XP_003709381.1 ProteinModelPortal:G4MKS9
EnsemblFungi:MGG_16154T0 GeneID:12984466 KEGG:mgr:MGG_16154
Uniprot:G4MKS9
Length = 694
Score = 89 (36.4 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 27/93 (29%), Positives = 47/93 (50%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
+A+ AY G Y GL+ + + + IE ++ +AL K + D P +
Sbjct: 168 IALKLAYLGKNYNGLE--------YQPSGALPAIEEELWKALVKTCLIFPDPERDPSEVD 219
Query: 61 FQ-----RAARTDKGVSALKQIVSLKLPEEANK 88
F+ + RTD+GVSA Q+V+L++ ++NK
Sbjct: 220 FKVCDYSKCGRTDRGVSAFGQVVALRV--KSNK 250
Score = 74 (31.1 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 29/104 (27%), Positives = 47/104 (45%)
Query: 83 PEEANKEA-----INEHLPEQIRILS-IKRVTKGFNSKNNCNARTYSY--TCPTYA---- 130
P A+KE +N LP IR+L+ GF+++++C+ R Y Y T P ++
Sbjct: 306 PYPADKEIKYCKMLNAVLPVDIRVLAWCPNPPPGFSARHSCHERQYRYFFTQPIFSPVPA 365
Query: 131 -------FATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNF 167
+ P T D L D ++ + +EG H+F NF
Sbjct: 366 RLDGVMGYKEPGSTHKDGYLDLDA---MREAARLFEGEHDFRNF 406
Score = 67 (28.6 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 20/81 (24%), Positives = 39/81 (48%)
Query: 203 IKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQF----DLPMAPGLGLLLEQVH 258
++G +F+ HQIR M+ V + + ++ + ++++ + PMA L+L
Sbjct: 463 VRGSAFLWHQIRHMIAVLFLVGQRLEKPSIVSELLDIEKYPGKPNYPMASDAPLVL---- 518
Query: 259 YD-LYNQKYGQDGM-HESLHF 277
+D LY + DG H L +
Sbjct: 519 WDCLYGGRTLPDGSTHGELEW 539
>RGD|1559560 [details] [associations]
symbol:Pusl1 "pseudouridylate synthase-like 1" species:10116
"Rattus norvegicus" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PIRSF:PIRSF001430 RGD:1559560 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
IPI:IPI00779525 Ensembl:ENSRNOT00000055334 ArrayExpress:F1M9T7
Uniprot:F1M9T7
Length = 278
Score = 108 (43.1 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 50/185 (27%), Positives = 80/185 (43%)
Query: 54 NTPQNIQFQRAARTDKGVSALKQIVSLKL----------PEEANKEAINEHLPEQ-IRIL 102
N+ + ++F ++RTD GV AL L + PE K A+N HL IR+L
Sbjct: 17 NSVEPVRFTISSRTDAGVHALSNAAHLDIQRRPGRPPFSPEIVTK-ALNTHLKHPAIRVL 75
Query: 103 SIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQ----DTKDDFRLTPDQFNF--LQALLK 156
RV F++++ +RTY Y T Q + + L + + +Q +
Sbjct: 76 KAFRVPNDFHARHAATSRTYLYRLATGCSGPNQLPVFEQNVCWSLQTEYLDIAAMQEAAQ 135
Query: 157 QYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQ-P---FV--KDG--LELITLKIKGQSF 208
GTH+F F S P+ P R + P FV ++ L+ TL+ + QSF
Sbjct: 136 HLLGTHDFSAFQSAGSPV-PHAVRTLRRVSVSPGPASLFVLPQESRRLQFWTLEFESQSF 194
Query: 209 MLHQI 213
+ Q+
Sbjct: 195 LYRQV 199
Score = 68 (29.0 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 210 LHQIRKMVGVAMAIARGFTS----KDLIEKTFGLDQFDLPMAPGLGLLLEQVHYD 260
L Q+R+M V +A+ G + K ++E L ++ +AP GL L+ V YD
Sbjct: 218 LLQVRRMTAVLVAVGLGILAPTQVKVILESQDPLGKYQARVAPAHGLFLKSVLYD 272
>SGD|S000001895 [details] [associations]
symbol:DEG1 "tRNA:pseudouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IMP;IDA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IDA;IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0016853 "isomerase
activity" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 SGD:S000001895 GO:GO:0005634 GO:GO:0005737 EMBL:D50617
EMBL:BK006940 GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031119 KO:K01855 BRENDA:5.4.99.12 eggNOG:COG0101
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000199032
GeneTree:ENSGT00510000047444 EMBL:AY693197 PIR:S14145
RefSeq:NP_116655.1 ProteinModelPortal:P31115 SMR:P31115
DIP:DIP-5151N IntAct:P31115 MINT:MINT-531752 STRING:P31115
PaxDb:P31115 PeptideAtlas:P31115 PRIDE:P31115 EnsemblFungi:YFL001W
GeneID:850550 KEGG:sce:YFL001W CYGD:YFL001w OMA:KFSRCGR
OrthoDB:EOG46T69C NextBio:966327 Genevestigator:P31115
GermOnline:YFL001W Uniprot:P31115
Length = 442
Score = 132 (51.5 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 46/143 (32%), Positives = 71/143 (49%)
Query: 1 MAMMFAYSGVGYFGL--QSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQN 58
+A+ FAY G Y GL Q +Y + T+EG I+EA+ K V Q+
Sbjct: 94 IALRFAYLGWNYNGLAVQKEYT---------PLPTVEGTILEAMNKCKLVPSMVL---QD 141
Query: 59 IQFQRAARTDKGVSALKQIVSLKL-----------PEEANKE-----AINEHLPEQIRIL 102
+F R RTDKGVSA+ Q++SL++ P ++E +N+ LP+ IRI
Sbjct: 142 YKFSRCGRTDKGVSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRIS 201
Query: 103 SI-KRVTKGFNSKNNCNARTYSY 124
++ R F+++ +C R Y Y
Sbjct: 202 AVCLRPPPNFDARFSCVHRHYKY 224
Score = 46 (21.3 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 8/44 (18%), Positives = 22/44 (50%)
Query: 205 GQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAP 248
G +F+ HQ+R M+ + + + +++ + +++ P P
Sbjct: 287 GSAFLWHQVRCMMAILFLVGQSLEVPEIVLRLTDIEK--TPQRP 328
>TIGR_CMR|APH_0502 [details] [associations]
symbol:APH_0502 "tRNA pseudouridine synthase A"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006400 "tRNA
modification" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 RefSeq:YP_505097.1 ProteinModelPortal:Q2GKK4
STRING:Q2GKK4 GeneID:3931158 KEGG:aph:APH_0502 PATRIC:20949644
HOGENOM:HOG000248672 OMA:RHYRYRI ProtClustDB:PRK00021
BioCyc:APHA212042:GHPM-526-MONOMER Uniprot:Q2GKK4
Length = 246
Score = 131 (51.2 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 57/212 (26%), Positives = 93/212 (43%)
Query: 57 QNIQFQRAARTDKGVSALKQIV--SLKLPEE--ANKEAINEHLP-EQIRILSIKRVTKGF 111
Q++ A RTD GV A Q+V LK+ E K A+N +L E++ IL ++RV + F
Sbjct: 42 QSVIVYAAGRTDAGVHATGQVVHFDLKVSREDYVIKNALNHYLRNEKVSILQLERVDEEF 101
Query: 112 NSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNF--LQALLKQYEGTHNFHNFTS 169
+++ + R Y+Y D + + P + N ++ G H+F +F +
Sbjct: 102 HARFSAKKRHYTYKISNREAPLCIDLMRMWHV-PKRLNVENMREAASYIVGKHDFASFRA 160
Query: 170 KRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARG-FT 228
K D I + D + E I + I QSF+ Q+R VG + G +
Sbjct: 161 K----DCQSKSSIKTVDSIDIIAAE--EEININISAQSFLHKQVRITVGTFVECGMGLYP 214
Query: 229 SKDLIEKTFGLDQFDLPM-APGLGLLLEQVHY 259
++E D+ + AP GL L +V Y
Sbjct: 215 PAHVLEILEKKDRAAAGITAPAHGLYLTRVDY 246
>UNIPROTKB|F5H168 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase A, mitochondrial"
species:9606 "Homo sapiens" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020103 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:AC131009 Gene3D:3.30.70.580
PANTHER:PTHR11142 HGNC:HGNC:15508 ChiTaRS:PUS1 IPI:IPI01010216
ProteinModelPortal:F5H168 SMR:F5H168 Ensembl:ENST00000535067
ArrayExpress:F5H168 Bgee:F5H168 Uniprot:F5H168
Length = 134
Score = 112 (44.5 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 58 IVLLMAYSGKGYHGMQ----------RNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMR 107
Query: 58 NIQFQRAARTDKGVSALK 75
+ FQR ARTDK S L+
Sbjct: 108 KMSFQRCARTDKVPSPLE 125
>DICTYBASE|DDB_G0288909 [details] [associations]
symbol:pus3 "tRNA pseudouridylate synthase"
species:44689 "Dictyostelium discoideum" [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0006396 "RNA
processing" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0004730 "pseudouridylate
synthase activity" evidence=ISS] [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 dictyBase:DDB_G0288909 GO:GO:0005634 GO:GO:0005737
EMBL:AAFI02000126 GenomeReviews:CM000154_GR GO:GO:0003723
GO:GO:0006396 GO:GO:0008033 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0004730 KO:K01855 eggNOG:COG0101 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
RefSeq:XP_636482.1 ProteinModelPortal:Q54I97 STRING:Q54I97
EnsemblProtists:DDB0231223 GeneID:8626865 KEGG:ddi:DDB_G0288909
InParanoid:Q54I97 OMA:PPYEMAS Uniprot:Q54I97
Length = 491
Score = 107 (42.7 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 48/154 (31%), Positives = 70/154 (45%)
Query: 149 NFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSF 208
N ++ K Y G HN+ NF K S R I+ FD E+ V++ EL IKG +F
Sbjct: 258 NLMKEASKLYLGEHNYINFC-KIDVNVKSFMRVILQFDIEK--VENS-ELYVATIKGFAF 313
Query: 209 MLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQ 268
+ HQIR M+ V I + + LI + LD P + E V L++ Y
Sbjct: 314 LWHQIRCMMAVLFLIGQKKANISLITQL--LDTNKTITKPPYEMASE-VPLVLFDCGYDD 370
Query: 269 -DGMHESLHFHEVDKEVNEFRHKFILPYLVKTEI 301
D ++ES V ++ E YL+KTE+
Sbjct: 371 IDFIYES----SVQEKTVESMFGVYNDYLIKTEV 400
Score = 70 (29.7 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 21 FFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSL 80
FF ++ +TIE +++A K + + + + ++ RTDKGVSA Q++SL
Sbjct: 98 FFGFAAQDCSEETIENYLIKAFLKTSLIPDI-----KTANYFKSGRTDKGVSAYGQVISL 152
>TIGR_CMR|CBU_0892 [details] [associations]
symbol:CBU_0892 "tRNA pseudouridine synthase A"
species:227377 "Coxiella burnetii RSA 493" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0016829 GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0031119 KO:K06173 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
HOGENOM:HOG000248672 ProtClustDB:PRK00021 OMA:TPFRNVH
RefSeq:YP_338281.1 ProteinModelPortal:Q4AAX9 SMR:Q4AAX9
GeneID:1208785 KEGG:cbu:CBU_0892 PATRIC:17930485
BioCyc:CBUR227377:GJ7S-885-MONOMER Uniprot:Q4AAX9
Length = 261
Score = 127 (49.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 61/243 (25%), Positives = 102/243 (41%)
Query: 29 QGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLPEEANK 88
+ +KT++G++ +AL N P + A RTD GV A Q+ +
Sbjct: 22 EALKTVQGEVEKALSAVA-------NHPVFVTC--AGRTDAGVHASAQVAHFDTTAYRSD 72
Query: 89 EA----INEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKD-DFRL 143
A N +LP I IL K V + F+++ + AR Y Y + K +
Sbjct: 73 HAWVFGANSNLPHDISILWAKAVEEDFHARYSAMARRYRYIVYNHEIRPAILRKAIGWHY 132
Query: 144 TPDQFNFLQALLKQYEGTHNFHNFTS----KRKPLDPSCSRYIMSFDCEQPFVKDGLELI 199
P +QA + G H+F +F R P+ R I F E ++ ++
Sbjct: 133 RPLDEKRMQAGAQYLIGEHDFSSFQGAGCQSRTPV-----RKI--FQIEIYRIR---RMV 182
Query: 200 TLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE---KTFGLDQFDLPMAPGLGLLLEQ 256
++++ +F+LH +R + GV +AI G D + K Q + + P GL L +
Sbjct: 183 VIEVQANAFLLHMVRNIAGVLIAIGSGEKHPDWAQTVLKAKDRRQGGVTVPPN-GLYLVE 241
Query: 257 VHY 259
V+Y
Sbjct: 242 VNY 244
>TIGR_CMR|ECH_0622 [details] [associations]
symbol:ECH_0622 "tRNA pseudouridine synthase A"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006400
"tRNA modification" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000248672 ProtClustDB:PRK00021
RefSeq:YP_507432.1 ProteinModelPortal:Q2GGK1 STRING:Q2GGK1
GeneID:3927636 KEGG:ech:ECH_0622 PATRIC:20576696 OMA:YSINANR
BioCyc:ECHA205920:GJNR-624-MONOMER Uniprot:Q2GGK1
Length = 245
Score = 124 (48.7 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 54/206 (26%), Positives = 90/206 (43%)
Query: 64 AARTDKGVSALKQIVSLKLPEEAN----KEAINEHL-PEQIRILSIKRVTKGFNSKNNCN 118
A RTD GV AL Q+ L + + AIN HL P I ILS+++ F+++ +
Sbjct: 48 AGRTDAGVHALGQVAHFDLTTNLDTYVVRNAINYHLIPHAIAILSVEKTDDKFHARFSAK 107
Query: 119 ARTYSYTCPT-YAFATPQDTKDDFRLTPDQF-NFLQALLKQYEGTHNFHNFTSKR-KPLD 175
R Y Y Y+ T + P N +QA+ + +G H+F +F ++ + +
Sbjct: 108 KRHYLYKIINRYSPLTIDYNRAWLIHNPLNIENMIQAI-EYIKGNHDFSSFRARHCQSKN 166
Query: 176 PSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK 235
P I + D + + + + I + I SF+ HQ+R +VG + + S + I+
Sbjct: 167 P-----IKTID-DLKIIHNN-QSINIHISAISFLHHQVRIIVGTLVECGKNNFSPEHIKN 219
Query: 236 TFGLDQFDLP--MAPGLGLLLEQVHY 259
AP GL +V Y
Sbjct: 220 ILKAKNRSYAGMTAPPYGLYFVKVDY 245
>UNIPROTKB|F8W9U5 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase A, mitochondrial"
species:9606 "Homo sapiens" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020103 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:AC131009 Gene3D:3.30.70.580
PANTHER:PTHR11142 HGNC:HGNC:15508 ChiTaRS:PUS1 IPI:IPI01009394
ProteinModelPortal:F8W9U5 SMR:F8W9U5 Ensembl:ENST00000456665
ArrayExpress:F8W9U5 Bgee:F8W9U5 Uniprot:F8W9U5
Length = 156
Score = 109 (43.4 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 58 IVLLMAYSGKGYHGMQ----------RNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMR 107
Query: 58 NIQFQRAARTDK 69
+ FQR ARTDK
Sbjct: 108 KMSFQRCARTDK 119
>TIGR_CMR|GSU_2877 [details] [associations]
symbol:GSU_2877 "tRNA pseudouridine synthase A"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 ProtClustDB:PRK00021 HOGENOM:HOG000248673
OMA:TPFRNVH RefSeq:NP_953919.1 ProteinModelPortal:P60350
GeneID:2688667 KEGG:gsu:GSU2877 PATRIC:22028615
BioCyc:GSUL243231:GH27-2866-MONOMER Uniprot:P60350
Length = 244
Score = 118 (46.6 bits), Expect = 0.00011, P = 0.00011
Identities = 46/210 (21%), Positives = 86/210 (40%)
Query: 59 IQFQRAARTDKGVSALKQIVSL----KLPEEANKEAINEHLPEQIRILSIKRVTKGFNSK 114
++ + + RTD GV A + + +P A + +N LP I + S GFN +
Sbjct: 43 VRLRASGRTDAGVHARGMVAAFDTDRSIPLRAFSDGLNALLPPDIAVRSADEALPGFNPR 102
Query: 115 NNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNF--LQALLKQYEGTHNFHNFTSKRK 172
+ Y YT +P + + N ++ + G +F +F +
Sbjct: 103 FAATGKHYRYTIHRGERRSPLVRLQSWHVR-GALNLAAMREAARHLTGERDFASF----R 157
Query: 173 PLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARG-FTSKD 231
+ I D + + D E++T+ + G F+ + +R MVG + + RG T +
Sbjct: 158 TAGCAARTTIRRVDAVE--ISDDGEMLTVDVHGSGFLRNMVRIMVGTLVEVGRGKLTPEH 215
Query: 232 LIEKTF--GLDQFDLPMAPGLGLLLEQVHY 259
+ + G+ P AP GL L++V +
Sbjct: 216 VAQMVVCPGVVPAG-PTAPPQGLCLQKVRF 244
>TAIR|locus:2077552 [details] [associations]
symbol:AT3G06950 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS] [GO:0006730
"one-carbon metabolic process" evidence=RCA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000248673 OMA:GKSFLWE EMBL:BT029513
IPI:IPI00532571 RefSeq:NP_187351.2 UniGene:At.18751
UniGene:At.40432 ProteinModelPortal:A1A6J3 SMR:A1A6J3 STRING:A1A6J3
EnsemblPlants:AT3G06950.1 GeneID:819880 KEGG:ath:AT3G06950
TAIR:At3g06950 InParanoid:A1A6J3 PhylomeDB:A1A6J3
ProtClustDB:CLSN2690754 Genevestigator:A1A6J3 Uniprot:A1A6J3
Length = 323
Score = 120 (47.3 bits), Expect = 0.00012, P = 0.00012
Identities = 50/217 (23%), Positives = 91/217 (41%)
Query: 57 QNIQFQRAARTDKGVSALKQIVSLKLPE-----EANKEAINEHLPEQIRILSIKRVTKGF 111
+ +Q A RTD GV A Q+ P ++ A+N LP+ IR+ + F
Sbjct: 83 KELQLIGAGRTDAGVHAWGQVAHFVTPFNYTSLDSFHAALNGLLPKDIRVRELSAAVPEF 142
Query: 112 NSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPD-QFNFLQALLKQYEGTHNFHNFTSK 170
+++ + +++ Y Y F P + + ++ + G H+F F +
Sbjct: 143 HARFSASSKVYRYQIYNDTFMDPFQRHWAYHCAYKLNASKMREAANLFVGKHDFSAFANA 202
Query: 171 -RKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTS 229
R+ P + I FD ++ G L+ L+++G F+ Q+R MV + + I +
Sbjct: 203 TREDGVPDPLKTISRFDV----IQMG-SLLQLEVEGSGFLYRQVRNMVALLIQIGKEALD 257
Query: 230 KDLIEKTFG------LDQF-DLPMAPGLGLLLEQVHY 259
D++ L ++ LP +P GL L V Y
Sbjct: 258 SDIVPMILETKDRRVLAKYTSLPASPH-GLCLVSVKY 293
>UNIPROTKB|F1LXZ7 [details] [associations]
symbol:Pusl1 "tRNA pseudouridine synthase" species:10116
"Rattus norvegicus" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PIRSF:PIRSF001430 RGD:1559560 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
IPI:IPI00359178 Ensembl:ENSRNOT00000036307 ArrayExpress:F1LXZ7
Uniprot:F1LXZ7
Length = 217
Score = 114 (45.2 bits), Expect = 0.00022, P = 0.00022
Identities = 45/159 (28%), Positives = 71/159 (44%)
Query: 83 PEEANKEAINEHLPEQ-IRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQ----DT 137
PE K A+N HL IR+L RV F++++ +RTY Y T Q +
Sbjct: 25 PEIVTK-ALNTHLKHPAIRVLKAFRVPNDFHARHAATSRTYLYRLATGCSGPNQLPVFEQ 83
Query: 138 KDDFRLTPDQFNF--LQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQ-P---F 191
+ L + + +Q + GTH+F F S P+ P R + P F
Sbjct: 84 NVCWSLQTEYLDIAAMQEAAQHLLGTHDFSAFQSAGSPV-PHAVRTLRRVSVSPGPASLF 142
Query: 192 V--KDG--LELITLKIKGQSFMLHQIRKMVGVAMAIARG 226
V ++ L+ TL+ + QSF+ Q+R+M V +A+ G
Sbjct: 143 VLPQESRRLQFWTLEFESQSFLYRQVRRMTAVLVAVGLG 181
>UNIPROTKB|F5H1B2 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase A, mitochondrial"
species:9606 "Homo sapiens" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020103 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:AC131009 Gene3D:3.30.70.580
PANTHER:PTHR11142 HGNC:HGNC:15508 ChiTaRS:PUS1 IPI:IPI01009817
ProteinModelPortal:F5H1B2 SMR:F5H1B2 Ensembl:ENST00000544213
ArrayExpress:F5H1B2 Bgee:F5H1B2 Uniprot:F5H1B2
Length = 184
Score = 109 (43.4 bits), Expect = 0.00044, P = 0.00044
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
+ ++ AYSG GY G+Q RN G KTIE D++ AL ++G + E+ +
Sbjct: 86 IVLLMAYSGKGYHGMQ----------RNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMR 135
Query: 58 NIQFQRAARTDK 69
+ FQR ARTDK
Sbjct: 136 KMSFQRCARTDK 147
>UNIPROTKB|J3KTG4 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase" species:9606
"Homo sapiens" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723
EMBL:AL139287 GO:GO:0008033 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.30.70.660 PANTHER:PTHR11142
HGNC:HGNC:26914 ChiTaRS:PUSL1 Ensembl:ENST00000467712
Uniprot:J3KTG4
Length = 126
Score = 94 (38.1 bits), Expect = 0.00053, P = 0.00053
Identities = 36/121 (29%), Positives = 55/121 (45%)
Query: 151 LQALLKQYEGTHNFHNFTSKRKPLDPSCSRYI--MSFDCEQ--PFVKDG----LELITLK 202
+Q + GTH+F F S P+ PS R + +S Q P V L L+
Sbjct: 4 MQEAAQHLLGTHDFSAFQSAGSPV-PSPVRTLRRVSVSPGQASPLVTPEESRKLRFWNLE 62
Query: 203 IKGQSFMLHQIRKMVGVAMAIARGFTS----KDLIEKTFGLDQFDLPMAPGLGLLLEQVH 258
+ QSF+ Q+R+M V +A+ G + K ++E L + +AP GL L+ V
Sbjct: 63 FESQSFLYRQVRRMTAVLVAVGLGALAPAQVKTILESQDPLGKHQTRVAPAHGLFLKSVL 122
Query: 259 Y 259
Y
Sbjct: 123 Y 123
>TIGR_CMR|CHY_2276 [details] [associations]
symbol:CHY_2276 "tRNA pseudouridine synthase A"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006400 "tRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PIRSF:PIRSF001430 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119
eggNOG:COG0101 KO:K06173 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 HOGENOM:HOG000248673
OMA:TPFRNVH RefSeq:YP_361085.1 STRING:Q3A9U9 GeneID:3728226
KEGG:chy:CHY_2276 PATRIC:21277623
BioCyc:CHYD246194:GJCN-2275-MONOMER Uniprot:Q3A9U9
Length = 246
Score = 112 (44.5 bits), Expect = 0.00054, P = 0.00054
Identities = 68/264 (25%), Positives = 107/264 (40%)
Query: 3 MMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQ 62
+ AY G + G Q + +N +TI+G + E L K P ++
Sbjct: 9 LTIAYDGTNFAGFQKQ--------KNTP-QTIQGILEEKLHKI-------LKEP--VKVI 50
Query: 63 RAARTDKGVSALKQIVSLKLPEEA--NK--EAINEHLPEQIRILSIKRVTKGFNSKNNCN 118
A RTD GV AL Q+V+ P +A +K E +N LP IR+L + V F+++ +
Sbjct: 51 GAGRTDAGVHALGQVVNFSAPWKAPVDKIPEILNNTLPTAIRVLEAEIVPDDFHARYSAR 110
Query: 119 ARTYSYTCPTYAFATPQDTKDDFRLTP--DQFNFLQALLKQYEGTHNFHNFTSKRKPLDP 176
+ Y Y Y +P + + L D+ +AL + GTH+F F +
Sbjct: 111 KKEYRYYL-YYGPPSPFYERYAWALPQKLDREKVAKAL-EYLIGTHDFSGFGAAG----- 163
Query: 177 SCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIA-RGFTSKDLIEK 235
S + + E + +DG L SF+ R + G + I G +
Sbjct: 164 SSGKNPIKTMFEASYREDGF-LGYFTFVADSFLYKMARILTGTLVEIGLNGHPERVREIL 222
Query: 236 TFGLDQFDLPMAPGLGLLLEQVHY 259
T G + AP GL L +V Y
Sbjct: 223 TTGNKKLAGKTAPAHGLFLVKVFY 246
>TIGR_CMR|SPO_3143 [details] [associations]
symbol:SPO_3143 "tRNA pseudouridine synthase A"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006400 "tRNA
modification" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000248672 OMA:RHYRYRI
ProtClustDB:PRK00021 RefSeq:YP_168346.1 ProteinModelPortal:Q5LNR0
GeneID:3193303 KEGG:sil:SPO3143 PATRIC:23379731 Uniprot:Q5LNR0
Length = 262
Score = 111 (44.1 bits), Expect = 0.00082, P = 0.00082
Identities = 61/258 (23%), Positives = 108/258 (41%)
Query: 13 FGLQSKYLF--FLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKG 70
+ L+ +YL F + R + + +++G I AL + E P I A RTD G
Sbjct: 4 YALKVEYLGTPFAGWQRQKDLPSVQGAIETALARL----EPG---PHTIA--AAGRTDAG 54
Query: 71 VSALKQIVSLKLPEEAN----KEAINEHL-PEQIRILSIKRVTKGFNSKNNCNARTYSYT 125
V L Q+ L + + EA+N HL P+ + I + RV + ++++ + R Y +
Sbjct: 55 VHGLGQVAHCDLTRDWDPFRLSEALNYHLKPQPVAITAAARVAEDWHARFSATERQYLFR 114
Query: 126 CPTYAFATPQDTKDDFRLTPD-QFNFLQALLKQYEGTHNFHNFTSKR-KPLDPSCSRYIM 183
D +++ +QA G H+F F S + P + +
Sbjct: 115 LLMRRAPATHDAGLVWQVGHRLDARAMQAAADLLLGRHDFTTFRSSICQAASPVKTLDEL 174
Query: 184 SFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARG-FTSKDLIEKTFGLDQF 242
+ + F G E I ++ +SF+ +Q+R VG + G + +D+ D+
Sbjct: 175 RVEAVESF--SGPE-IRFHVRARSFLHNQVRSFVGTLERVGAGAWAPEDVRSALEARDRA 231
Query: 243 DL-PMAPGLGLLLEQVHY 259
P+ P GL L +V Y
Sbjct: 232 ACGPVCPPQGLYLARVGY 249
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.136 0.403 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 375 345 0.00097 116 3 11 22 0.37 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 70
No. of states in DFA: 608 (65 KB)
Total size of DFA: 231 KB (2126 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 27.09u 0.08s 27.17t Elapsed: 00:00:09
Total cpu time: 27.11u 0.08s 27.19t Elapsed: 00:00:09
Start: Thu Aug 15 14:26:31 2013 End: Thu Aug 15 14:26:40 2013